lowQualScore : 1111111111111111111111 11111111111 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 2222222222222222222222 22 66666666666 4 1 4 1 44444 1 1 22222 1 33 6666666666666666666666 11 444 1 1 1 55 11 1 1 5555 999999999999999 444 1 77777777 33333333333 1 444444 4 1 777777777777 4 4 44 4 6666 2 33 44 222 2 222222 6666666666666666 1 111 4 1 2 1 1 2222222222 4444444 1 22 66666666 11 333 444444444444 333 11 1 33333333 2222222 111 2 1111111 22 1111 44444444444444444444444444444444444444444444444444444444 1 3333 33 22222222 7777777777777 22 2
lowQualScore : 7 6 5 6 6 2222222222222222222222 33 6 6 88888888888 0 6 6 5 0 5 99999 7 7 99999 6 6 5 00 6 6 7777777777777777777777 22 6 888 6 7 7 6 6 5 6 6 55 22 5 5 2222 888888888888888 6 6 777 6 6 6 5 55555555 33333333333 7 888888 0 6 5 6 666666666666 6 6 6 0 6 6 6 0 6 66 6 0 6 6 6 0000 0 00 66 6 3 888 6 2 7 77 888888 6666666666666666 0 777 0 0 0 5 5 1 0000000000 8888888 7 6 44 77777777 6 6 7 33 6 8 333 8 222222222222 3 1 000 6 66 8 3 77777777 4 1 2 8888888 6 6 6 333 8 3 1 8888888 11 5 4444 77777777777777777777777777777777777777777777777777777777 2 8 2222 55 77777777 1 0 4444444444444 11 3
lowQualScore : . . . . . ...................... .. . . ........... . . . . . . ..... . . ..... . . . .. . . ...................... .. . ... . . . . . . . . .. .. . . .... ............... . . ... . . . . ........ ........... . ...... . . . . ............ . . . . . . . . . .. . . . . . .... . .. .. . . ... . . . .. ...... ................ . ... . . . . . . .......... ....... . . .. ........ . . . .. . . ... . ............ . . ... . .. . . ........ . . . ....... . . . ... . . . ....... .. . .... ........................................................ . . .... .. ........ . . ............. .. .
lowQualScore : 0 0 0 0 0 0000000000000000000000 00 0 0 00000000000 0 0 0 5 0 0 00000 0 0 00000 0 0 0 00 0 0 0000000000000000000000 00 0 000 0 0 0 0 0 0 0 0 00 00 0 0 0000 000000000000000 0 0 000 0 0 0 0 00000000 00000000000 0 000000 0 0 0 0 000000000000 0 0 0 0 0 0 0 0 0 00 0 0 0 0 0 0000 0 00 00 0 7 333 0 5 8 88 888888 2222222222222222 0 555 0 0 0 0 0 0 0000000000 7777777 3 7 00 77777777 7 7 0 88 0 0 444 0 999999999999 3 0 000 7 88 3 3 77777777 8 0 2 3333333 7 7 7 444 0 0 9 6666666 44 7 6666 77777777777777777777777777777777777777777777777777777777 3 3 0000 77 33333333 0 7 0000000000000 00 3
consensus : NNNNNNNNNNNNNTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTAGTATATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATNNAATATATGGNTAATATTGAGCACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAANTTAAANATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAG-AAAGTCCAAACTGCTCGTGTG-ATTGCCAGAGGATTCGTA-T--ANTTTCTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATATTT-ACTCAGTTATCCT----ATTATTGATTGTCACTTA-NNTT-ATGGGGAGATGAAAC-CAAACNTGGATGATATAAACCANCTA-TNTNT-TTTC-TCT-GTTCAAAAG-TNTATCGGA-GATTCTGGTAGATTTAC-------TG--TAT-GA-T--ACCTCC-----A-CA---TATTNT--ATT--AATCA---AAT-ACC--------GTGTA-TACCTATTTTTCTATCTAATGTAACTACG-AATTATCATGTCTAC---TTGTAATTAGTATA--GTATGTTGACAGTTGT-TTTA
Reference ( gi|1 ) : GTTCAAAGTACTATGTAATCGAACACAGAAAGTTATGTATAAGTA---------TACTA-----TCTCTTTGTAGAACCA-CAGATGCAGCGTGTACCACAGGG-TCAGTTCTTGGCCCTTTGTT-TTTTTGATCTATGTGCA-AACGTAGCTGAAAATATGATATCATTATGTAGACTGTTTGCAGATGAGCATTCATTACAATGTAC--CATCTAATTTATGCA-AATATTGAATACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACTTCATT-TCAGCAATGTCCATTAGAATTCTTGACATCTCACAAGCATTTAGGATTAGTT-TTAGTCGCGATCTTAGTTGG-TTGAATACATTACAGTCTAACA---AAAAAGGCTTATCAAAGATTAG-TCTTCTGAAAAATATAAATACAT--ATCATTTGTAGAAATA---CCTTATCAAAAATGTAT-ACACATTTATTAG-CCATTGCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCAC-CGATTCACCTATACTTAGAGACAGGATTGGGAGCCACTTTCAGAAAAGA-AAGAGTGGCAAAG-TAAATACAATGTTTAAAGTTTCAATGATTTAGTTCCAGATTATCTTAAAGATAATATTTCCCTCTCAACTGAAAGTTATGCATCAAATACATACAGAAATAGAGAGGATGTATACCCTCCTAAAGTTAGACTAAATATTTAAGAAATCTTTGTTCCTACTAATTTAAATGGAATAATATAATTTACAATAAGAAATAAGCCTCTTAAGTAACTT-AAAAATAATATAAGGAAATCCAC--CAAAACCCC-ACCTTATTTCTCGCACGACAGATAGAAAGTTAATAATAATTCACACAAAACTTAGGCAACAATTGCATCTTAAATTATGATT------TATTTA----------------GAA-GAAA---TAT-ATAG-AA-GTCAAAAATGTTCGTGTGGATTATCAGAGGATTCGT--T--ACTTCCTTCTTTCAATGTTACAAATTAAATAGATGCCAGAAGTGAATTATT--AAGAAATCCTTT-AC-T-TTT-ACTCAGATACCCT----ATTATCGATTGTCATTTA-TGTT-ATGGGAGGATGAATC-CAAA-ATGAACGATGTAAATCAACTA-TATAT-TTTC-TCT-GTTCAAAAG-TATATCGGAGGATTCTGGTAGATTTAC-------TG--TAT-GA-T--ACCTAC-----A-CATC-TATCTT--ATT--AATCA---AAT-ACCCATCA-A-GTGTA-TACTTATTTTTCTTTCTAAT-TAACTACACAATTATCATGTCTAC--ATTATGATTA-TATA--GTA---TGACAAGTGTGTTTA
gi|4 : TGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTA-----TCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATATAATATA-GAT-AATATTGAGCACATTT
gi|5 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaaagtatcaacgaaggaaaattttgttgcataggatttttgctatctatatatctaaagcgtttgacagagtttggcatagataatccattttcaaactaaagatttacggtatttgtgatttacttgagtggctTGAAATCAAACAGAGAGAGTTATGCATAAACAATC------TACTAGTATATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTT-GTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAAC--T-TCAAATATATAGATAATATTGAGCACATTTtga
gi|8 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaagtatcaacgaagaaaattttgttgcataggatttttgctatctatatatctaaagcgttttgacagagtttggcatagataatcattttcaacctaagattacggtatttgtgatctgagctAACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGT
gi|12 : ATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGT
gi|2 : actcataTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAAGTTAAATATACTTCACACAAAACTCAGGCA-CAATTGCATCTTAAATTATGATT------TATCTA----------------GAA-GAAA---TATCATAG-AAAGTCCAAACTGTTCGTGTGTATTATCAGAGGATTCGT--TTCACTT-CTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-AC-T-TTTCACTCAGATA-CCT----ATTATCGATTGTCATTTATTGTT-ATGGGGAGATGAATC-CAAACATG-ACGATGTAAATCAGCTA-ATTGT-TTCC-TCT-GTTCAAAAG-TATATCGGA-GATTGTAGTAGATTTAC-------TG--TAT-GACT--ACCT-C-----A-CATCATATTAT--ATT--AATC-----TT-A-CCATCACATGTGTATTACTTAGTTTTCTTTCTAATGTAACTACA-AATTATCATGTCTACTTATTGTAATTAGTATA---TAT--TGACAGTTGT-TTTA
gi|3 : tC-ACCTTATTTTTGTCATGG-AAATAGAAAACTAAACATAATTCACACCAAACTCAGG-AACAATTGCATCTTGAATTATGATTTACATGTATTTA----------------GAA-AAAA---TATCATAGAAA-GTCCAAACTGCTCG--------------GGATTCGTA-T--CATTTCGTCTTTCAATGTACCAAATATAATA-ATGCCAGAA-T-AATT-TTAAAAGAAATATTTT-ACAT-TTT-ATTCATTTA-CCT----ATTGTTGATTGTCGTTTA-CTTTGATGGGGAGATGAATC-TAAACATG-ATGATATAAATCAACTA-TTCTT-TTCC-TCT-GTTCAAAAT-T-TATCAGA-GATTTTGGTAGATTTAC-------TG--TAT-GA-CTAACCGAC-----ATCATG-TA--TT--AT-----TCA---AATGACC-----------TT-TAC--ATTTTTCTATCTAATGTAACTATGAAATTATCATGTCTAC--CTTATAGTAA-T-TA--GTATATTAACAGTTGT-TTTAt
gi|6 : ATGGAAACTTAACA-TCATTCACACAAAAGTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTAAATGTAGAAAGAGCCGGGA-GAAAGAGTATTATTG-AAAGTCCTAACTGCTCCTGTGAATTGCCAGAGGACTCGTATC--ATTTTCTTCTCT--GTGTAACAAA--------------GAAGTGTATTATG--AAAAAATATTTT-ACAT-TTT-ACTCA-----TTT----ATTATTGGTTGTCACTCACTTTT-ATGGGTAAATGAAAC-TAAACATGA------CAAACCAAC-A-TAT-T-TTTCATCT-GTTTAAAAG-TGTTTCAGA-GATTCTGGTATATTTACTGGTACATG--TAT-GA-T--TCCt
gi|15 : ttgtcAGGCA-CAATTGCATCT-------TGGTT------TATTCA----------------GAATAAAA---TATCAGAG-AA-Gc
gi|9 : TTGTT--CAGAAGTCTTTTTAC-AATTC-ACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAAC-TTCGATGATATTA-CCATCTA--ATTTCTTTC-TCT-GTTCAAAAGTTTTATCAGA-GATTCTCGTTGATCTAC-------TGAACAT-CA-T--GACTCC-----A------TGTTTT--AT-----TCA---AAT-gtccaatctg
gi|7 : GAAGTCTTTT-AC-AATTC-ACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAAC-TTCGATGATATTAACCATCTAATTTCT-TTTC-TCT-GTTCAAAAG-TTTATCAGA-GATTCTCGTTGATCTAC-------TGAACAT-CA-T--GACTCC-----A------TGTTTT--AT-----TCA---AAT-gatctttggtttgaacgtattttattgtatgtaattat
gi|10 : CT----TTTATTGATTATCACTTA-C-TT-A------GACGACAC-TTAG-TGGGATGGTATAAACCAAC----ATAT-TTTC-CCTTGTTCAAATG--ATAATG--AGAT--------ATTTAC-------TGT-TAT-GACT--ACCTACATGTAA-CAAC--ATGCTGGATTCAAATCATTTGAT-AC---------ATGTA-TATCTATTTTTCTATCT------ATTAC----TTATCATA----------GTGATTAGTATACTGTATGTTGACAGTTGTGCTgatctttggtttgaacgtattttattgtatgtaatatatacaaatggattagacaac
gi|16 : tccgttttATATCGGAG-ATTCTGGTAGATTTAC-------TG--TATAGA-C--ACCTCA-----A-CA----ATCAT--ATT--Aa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AACATATTTTATTGTATATGTAATATATATAAACGGATTAGAAACAAGATCATACAGCTTACGCATTCTTATAAACTAATAGCACACAATTGTCATTGAAAA
Unaligned ( gi|13 ): TTTTATTGTACATGTATATAATATACTCAAAGGATTAGAAACAAGTTCGTACAACTTACTGCATT
Unaligned ( gi|14 ): CAATGTAACTATAAATTATCATGTCTTCTTACAGTAATTAGTATATATTGACAGTTATATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 66666666 1 111 11111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11 1 22 222 1 11 222 4444 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 333 2 1 1 1 11 1 11 222222 5555555555555555 111 2222222 11111 111 1 11 333 11 2222 1 1 11 1111111 11 1 44444444444 11111 111 77777777777 1 22 333333333 333333
lowQualScore : 7 44444444 7 7 3 6 7 7 7 7 888 77777 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 5 4 4 3 88 2 2 5 3 77 3 4 111 4 5 2 66 3 88 111 2222 4 5 2 5 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 4 555 0 5 5 5 2 88 6 0 3 1 00 8 22 333333 3333333333333333 8 444 3 3 3 9999999 44444 2 2 000 0 2 2 3 11 6 444 0 22 3 4444 777 1 2 33 1 1 1 1 00 1 1 5 1 1 5 1 0 6666666 33 5 5 5 11111111111 77 0 1 44444 111 33333333333 8888 2 99 2 2 1 3 22 0 1 333333333 0 333333 55 8
lowQualScore : . ........ . . . . . . . . ... ..... ..................................................................................................................... . . . . . .. . . . . .. . . ... . . . .. . .. ... .... . . . . . .................................................................................. . . ... . . . . . .. . . . . .. . .. ...... ................ . ... . . . ....... ..... . . ... . . . . .. . ... . .. . .... ... . . .. . . . . .. . . . . . . . . ....... .. . . . ........... .. . . ..... ... ........... .... . .. . . . . .. . . ......... . ...... .. .
lowQualScore : 3 77777777 3 3 3 7 3 3 3 3 777 77777 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 0 0 0 00 5 5 0 0 55 0 0 000 0 0 5 55 0 00 000 5555 0 5 5 5 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 000 0 0 0 5 5 55 7 7 3 0 88 0 22 000000 0000000000000000 0 000 2 8 2 5555555 88888 5 5 222 0 5 5 8 00 7 555 7 33 0 3333 777 4 1 00 0 4 7 0 77 0 0 7 0 1 0 4 5 2222222 88 0 0 0 44444444444 99 9 0 00000 777 88888888888 3333 0 22 2 5 4 0 33 8 0 888888888 8 222222 44 0
consensus : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TA---T-TCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATTTA------TTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTAT-NNTTTCTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACAT-TTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGAG-ATTCTGGTAGATTTAC-------TG--T-AT-GACTACCTC-CA--------CA--TGTTNTATT--AATCA---AATGACC-TCG---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTACA-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
Reference ( family-7924 ) : NNNNNNNNNNNNNTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTAGTATATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATNNAATATATGGNTAATATTGAGCACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAANTTAAANATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATTTA------TTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTGCCAGAGGATTCGTAT-ANTTTCTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATATTTACTCAGTTATCCT----ATTATTGATTGTCACTTA-NNTT-ATGGGGAGATGAAACCAAACNTGGATGATATAAACCANCT-ATNTNTTTTCTCTGTTCAAAAG-TNTATCGGAG-ATTCTGGTAGATTTAC-------TG--T-AT-GA-TACCTC-CA--------CA--TATTNTATT--AATCA---AAT-ACC-------GTGTA-TACCTATTT--TTCTATCTAATGTAACTACG-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATGTTGACAGTTGT-TTTA
gi|1 : TGTAATCGAACACAGAAAGTTATGTATAA-----------GTA-TACTATCTCTT--TGTAGAACCA-CAGATGCAGCGTGTACCACAGGG-TCAGTTCTTGGCCCTTTGTT-TTTTTGATCTATGTGCA-AACGTAGCTGAAAATATGATATCATTATGTAGACTGTTTGCAGATGAGCATTCATTACAATGTAC--CATCTAATTTATGCA-AATATTGAATACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACTTCATT-TCAGCAATGTCCATTAGAATTCTTGACATCTCACAAGCATTTAGGATTAGTT-TTAGTCGCGATCTTAGTTGG-TTGAATACATTACAGTCTAACA---AAAAAGGCTTATCAAAGATTAG-TCTTCTGAAAAATATAAATACAT--ATCATTTGTAGAAATA---CCTTATCAAAAATGTAT-ACACATTTATTAG-CCATTGCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCAC-CGATTCACCTATACTTAGAGACAGGATTGGGAGCCACTTTCAGAAAAGA-AAGAGTGGCAAAG-TAAATACAATGT
gi|1 : gttcaaagtactaTTAAGTAACTT-AAAAATAATATAAGGAAATCCAC--CAAAACCCC-ACCTTATTTCTCGCACGACAGATAGAAAGTTAATAATAATTCACACAAAACTTAGGCAACAATTGCATCTTAAATTATGATTTA------TTTA----------------GAA-GAAA---TAT-ATAGAA-GTCAAAAATGTTCGTGTGGA-TTATCAGAGGATTCGT-T-ACTTCCTTCTTTCAATGTTACAAATTAAATAGATGCCAGAAGTGAATTATT--AAGAAATCCTTT-AC-T-TTTACTCAGATACCCT----ATTATCGATTGTCATTTA-TGTT-ATGGGAGGATGAATCCAAA-ATGAACGATGTAAATCAACT-ATATATTTTCTCTGTTCAAAAG-TATATCGGAGGATTCTGGTAGATTTAC-------TG--T-AT-GA-TACCTA-CA--------CATCTATCTTATT--AATCA---AAT-ACCCATCAA-GTGTA-TACTTATTT--TTCTTTCTAAT-TAACTACACAATTATCATGTCTACA--TT---ATGATTA-TA--TA--GTA---TGACAAGTGTGTTTAttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcttaagtaacttaaaaataatataaggaaatccaccaaaaccccaccttatttctcgcacgacagatagaaagttaataataattcacacaaaacttaggcaacaattgcatcttaaattatgatttatttagaagaaatatatagaagtcaaaaatgttcgtgtggattatcagaggattcgttacttccttctttcaatgttacaaattaaatagatgccagaagtgaattattaagaaatcctttacttttactcagataccctattatcgattgtcatttatgttatgggaggatgaatccaaaatgaacgatgtaaatcaactatatattttctctgttcaaaagtatatcggaggattctggtagatttactgtatgatacctacacatctatcttattaatcaaatacccatcaagtgtatacttatttttctttctaattaactacacaattatcatgtctacattatgattatatagtatgacaagtgtgttta
gi|10 : gttcaaagtactatgtaatcgaacacagaaagttatgtataagtatactatctctttgtagaaccacagatgcagcgtgtaccacagggtcagttcttggccctttgtttttttgatctatgtgcaaacgtagctgaaaatatgatatcattatgtagactgtttgcagatgagcattcattacaatgtaccatctaatttatgcaaatattgaatacatttgaatcacgatttaagtatattagacagatatggtcattcaaatggctacttaaatttaatccctctaaaactaaagcatatttttcacactaaggctaaatgtatgctgtctacccaaacttcatttcagcaatgtccattagaattcttgacatctcacaagcatttaggattagttttagtcgcgatcttagttggttgaatacattacagtctaacaaaaaaggcttatcaaagattagtcttctgaaaaatataaatacatatcatttgtagaaataccttatcaaaaatgtatacacatttattagccattgcttgaatacgcttcagttgtttgggatgggtgtgccaatacaattatggaactagaaaagttcaattgtatgcagcgagaattactacaggattactatatatcatcaccgattcacctatacttagagacaggattgggagccactttcagaaaagaaagagtggcaaagtaaatacaatgtttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcTCCGTTTTCTT-----TTATTGATTATCACTTA-CTT--------AGACGACACTTAGTG-GGATGGTATAAACCAAC--ATATTTTCCCT-TGTTCAAATG-ATAAT--GAG-AT--------ATTTAC-------TG--TTAT-GACTACCTA-CATGTAACAACA--TGCTGGATTCAAATCATTTGAT-AC--------ATGTA-TATCTATTT--TTCTATCT------ATTAC----TTATCATA-------------GTGATTAGTA--TACTGTATGTTGACAGTTGT-
gi|12 : ATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTgcta
gi|14 : actcataAATGTAACTATA-AATTATCATGTCTTC---TTACAGTAATTAGTA-------TATATTGACAGTTAT-ATTA
gi|15 : cAGGCA-CAATTGCATCT-------TGGTTTA------TTCA----------------GAATAAAA---TATCAGAGAAGGTCCAATCTG
gi|16 : TATCGGAG-ATTCTGGTAGATTTAC-------TG--T-ATAGA-CACCTC-AA--------CA---ATCATATT--A
gi|2 : aTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAAGTTAAATATACTTCACACAAAACTCAGGCA-CAATTGCATCTTAAATTATGATTTA------TCTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGTTCGTGTGTA-TTATCAGAGGATTCGTTT-CACTTCTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-AC-TTTTCACTCAGATA-CCT----ATTATCGATTGTCATTTATTGTT-ATGGGGAGATGAATCCAAACAT-GACGATGTAAATCAGCT-AATTGTTTCCTCTGTTCAAAAG-TATATCGGAG-ATTGTAGTAGATTTAC-------TG--T-AT-GACTACCTCACAT-------CA--TATTATATT--AATC-----TT-ACCATCACATGTGTATTACTTAGTT--TTCTTTCTAATGTAACTACA-AATTATCATGTCTACTTATT---GTAATTAGTA-------TATATTGACAGTTGT-TTTAt
gi|3 : tCACCTTATTTTTGTCATGG-AAATAGAAAACTAAACATAATTCACACCAAACTCAGGAA-CAATTGCATCTTGAATTATGATTTACATGTATTTA----------------GAA-AAAA---TATCATAGAAAGTCCAAACTGCTCG---------------GGATTCGTAT-CATTTCGTCTTTCAATGTACCAAATATAATA-ATGCCAGAA-T-AATT-TTAAAAGAAATATTTT-ACAT-TTTATTCATTTA-CCT----ATTGTTGATTGTCGTTTA-CTTTGATGGGGAGATGAATCTAAACAT-GATGATATAAATCAACT-ATTCTTTTCCTCTGTTCAAAA--TTTATCAGAG-ATTTTGGTAGATTTAC-------TG--T-AT-GACTAAC-C-GA--------CA--TCATGTATT--ATTCA---AATGACC-------TT----TAC--ATTT--TTCTATCTAATGTAACTATGAAATTATCATGTCTAC---CT----TA--TAGTAATTA--GTATATTAACAGTTGT-TTTAt
gi|4 : TGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTA-----TCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATATAATATA--GATAATATTGAGCACATTTt
gi|5 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaaagtatcaacgaaggaaaattttgttgcataggatttttgctatctatatatctaaagcgtttgacagagtttggcatagataatccattttcaaactaaagatttacggtatttgtgatttacttgagtggctTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTA------TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTT-GTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCA---AATATATAGATAATATTGAGCACATTTtga
gi|6 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaagtatcaacgaagaaaattttgttgcataggatttttgctatctatatatctaaagcgttttgacagagtttggcatagataatcattttcaacctaagattacggtatttgtgatctgagctATGGAAACTTAA-CATCATTCACACAAAAGTCAGGCA-CAATTGCATCTTGAATTATGATTTA------TTTAAATGTAGAAAGAGCCGGGA-GAAAGAGTATTATTGAAAGTCCTAACTGCTCCTGTG-AATTGCCAGAGGACTCGTATCATTTTCTTCTCT--GTGTAACAAA--------------GAAGTGTATTATG--AAAAAATATTTT-ACAT-TTTACTCA-TT----T----ATTATTGGTTGTCACTCA-CTTTTATGGGTAAATGAAACTAAACATG------ACAAACCAAC--ATATTTTTCATCTGTTTAAAAG-TGTTTCAGAG-ATTCTGGTATATTTACTGGTACATG--T-AT-GA-TTCC
gi|7 : ttgtcGAAGTCTTTT-ACA-ATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATATTAACCATCTAATTTCTTTTCTCTGTTCAAAAG-TTTATCAGAG-ATTCTCGTTGATCTAC-------TGAAC-AT-CA-TGACTC-----------CA--TGTTTTAT-----TCA---AATGATCTTTG---GTTTG-AACGTATTTTATTGTATGTAATATA--TACA-AATc
gi|8 : AACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTggattagacaac
gi|9 : TTGTT--CAGAAGTCTTTTTACA-ATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATAT-TACCATCT-AATTTCTTTCTCTGTTCAAAAGTTTTATCAGAG-ATTCTCGTTGATCTAC-------TGAAC-AT-CA-TGACTC-----------CA--TGTTTTAT-----TCA---AATGATCTTTG---GTTTG-AACGTATTT--TATTGT---ATGTAATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACATATTTTATTGTATATGTAATATATATAAACGGATTAGAAACAAGATCATACAGCTTACGCATTCTTATAAACTAATAGCACACAATTGTCATTGAAAA
Unaligned ( gi|13 ): TTTTATTGTACATGTATATAATATACTCAAAGGATTAGAAACAAGTTCGTACAACTTACTGCATT
Alignments
lowQualScore : 33333333 1 33 11 1 11 1 11 222 1 11 222 2222 1 1 1 222 1 1 1 1 11 1 11 222222 5555555555555555 111 222 1 111 1 11 11 2222 111 1 1 2222222 44444444444444 11111 444444444444 111 333333333 333333
lowQualScore : 0 7 88888888 7 3 6 7 7 7 7 44 11 7 1 5 1 1 1 66 1 1 5 1 88 1 1 111 1 5 1 22 1 88 111 4444 1 5 1 5 1 5 1 111 5 5 5 5 1 88 6 3 0 00 8 22 333333 3333333333333333 8 444 3 3 3 777 11 9 22 0 2 1 000 0 2 2 3 11 6 3 0 22 3 4444 1 666 1 1 1 0 1 2 1 0 5 5 1 0 5 1 1 5 1 0 6666666 5 5 77777777777777 77 0 1 44444 2 666666666666 2 6 7 99 1 2 1 3 222 0 1 333333333 0 333333 0 8
lowQualScore : . . ........ . . . . . . . .. .. . . . . . . .. . . . . .. . . ... . . . .. . .. ... .... . . . . . . . ... . . . . . .. . . . .. . .. ...... ................ . ... . . . ... .. . .. . . . ... . . . . .. . . . .. . .... . ... . . . . . . . . . . . . . . . . . . ....... . . .............. .. . . ..... . ............ . . . .. . . . . ... . . ......... . ...... . .
lowQualScore : 7 3 77777777 3 3 7 3 3 3 3 00 00 3 0 5 0 0 0 55 0 0 0 0 55 0 0 000 0 0 0 00 0 00 000 0000 0 5 0 5 0 0 0 000 5 0 0 5 0 55 7 3 2 00 0 22 000000 0000000000000000 0 000 2 8 2 000 55 8 00 0 5 0 222 0 5 5 8 00 7 5 7 33 0 3333 4 333 4 0 6 6 4 7 7 6 0 7 0 3 7 9 1 0 4 5 0000000 7 0 77777777777777 99 4 0 00000 5 333333333333 5 7 5 22 0 5 4 0 555 8 0 888888888 8 222222 8 0
consensus : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TA-TCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACTA-TNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----T-AT-GACTACCTC-CA--------CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
Reference ( family-7924 ) : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATTCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATNNTTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACTA-TNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----T-AT-GACTACCTC-CA--------CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
gi|1 : TGTAATCGAACACAGAAAGTTATGTATAAGTA---TACTA-------TCTCTTTGTAGAACCA-CAGATGCAGCGTGTACCACAGGG-TCAGTTCTTGGCCCTTTGTT-TTTTTGATCTATGTGCA-AACGTAGCTGAAAATATGATATCATTATGTAGACTGTTTGCAGATGAGCATTCATTACAATGTAC--CATCTAATTTATGCA-AATATTGAATACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACTTCATT-TCAGCAATGTCCATTAGAATTCTTGACATCTCACAAGCATTTAGGATTAGTT-TTAGTCGCGATCTTAGTTGG-TTGAATACATTACAGTCTAACA---AAAAAGGCTTATCAAAGATTAG-TCTTCTGAAAAATATAAATACAT--ATCATTTGTAGAAATA---CCTTATCAAAAATGTAT-ACACATTTATTAG-CCATTGCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCAC-CGATTCACCTATACTTAGAGACAGGATTGGGAGCCACTTTCAGAAAAGA-AAGAGTGGCAAAG-TAAATACAATGT
gi|1 : gttcaaagtactaTTAAGTAACTT-AAAAATAATATAAGGAAATCCAC--CAAAACCCC-ACCTTATTTCTCGCACGACAGATAGAAAGTTAATAATAATTCACACAAAACTTAGGCAACAATTGCATCTTAAATTATGATT------TATTTA----------------GAA-GAAA---TAT-ATAGAA-GTCAAAAATGTTCGTGTGGA-TTATCAGAGGATTCGT-TACTTC-CTTCTTTCAATGTTACAAATTAAATAGATGCCAGAAGTGAATTATT--AAGAAATCCTTT-AC-TTTTACTCAGATACCCT----ATTATCGATTGTCATTTA-TGTT-ATGGGAGGATGAATCCAAA-ATGAACGATGTAAATCAACTA-TATATTTTCTCTGTTCAAAAG-TATATCGGAGGATTCTGGTAGATTTACTG-----T-AT-GA-TACCTA-CA--------CATCTATCTTATT--AATCAAAT-A-CCCATCAA---GTGTA-TACTTATTT--TTCTTTCTAAT-TAACTAC-ACAATTATCATGTCTACA--TT---ATGATTA-TA--TA--GTA---TGACAAGTGTGTTTAttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcttaagtaacttaaaaataatataaggaaatccaccaaaaccccaccttatttctcgcacgacagatagaaagttaataataattcacacaaaacttaggcaacaattgcatcttaaattatgatttatttagaagaaatatatagaagtcaaaaatgttcgtgtggattatcagaggattcgttacttccttctttcaatgttacaaattaaatagatgccagaagtgaattattaagaaatcctttacttttactcagataccctattatcgattgtcatttatgttatgggaggatgaatccaaaatgaacgatgtaaatcaactatatattttctctgttcaaaagtatatcggaggattctggtagatttactgtatgatacctacacatctatcttattaatcaaatacccatcaagtgtatacttatttttctttctaattaactacacaattatcatgtctacattatgattatatagtatgacaagtgtgttta
gi|10 : gttcaaagtactatgtaatcgaacacagaaagttatgtataagtatactatctctttgtagaaccacagatgcagcgtgtaccacagggtcagttcttggccctttgtttttttgatctatgtgcaaacgtagctgaaaatatgatatcattatgtagactgtttgcagatgagcattcattacaatgtaccatctaatttatgcaaatattgaatacatttgaatcacgatttaagtatattagacagatatggtcattcaaatggctacttaaatttaatccctctaaaactaaagcatatttttcacactaaggctaaatgtatgctgtctacccaaacttcatttcagcaatgtccattagaattcttgacatctcacaagcatttaggattagttttagtcgcgatcttagttggttgaatacattacagtctaacaaaaaaggcttatcaaagattagtcttctgaaaaatataaatacatatcatttgtagaaataccttatcaaaaatgtatacacatttattagccattgcttgaatacgcttcagttgtttgggatgggtgtgccaatacaattatggaactagaaaagttcaattgtatgcagcgagaattactacaggattactatatatcatcaccgattcacctatacttagagacaggattgggagccactttcagaaaagaaagagtggcaaagtaaatacaatgtttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcTCCGTTTTCTT-----TTATTGATTATCACTTA-C-TT-A------GACGACACTTAGTG-GGATGGTATAAACCAAC-A-TATTTTCCCT-TGTTCAAATG-ATAAT--GA-GAT--------ATTTACTG-----TTAT-GACTACCTA-CATGTAACAACA--TGCTGGATTCAAATCATTTGA-----TA-C---ATGTA-TATCTATTT--TTCTATCT------ATTAC-----TTATCATA-------------GTGATTAGTA--TACTGTATGTTGACAGTTGT-
gi|12 : ATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTgcta
gi|14 : actcataAATGTAACTAT-A-AATTATCATGTCTTC---TTACAGTAATTAGTA-------TATATTGACAGTTAT-ATTA
gi|15 : cAGGCA-CAATTGCATCT-------TGGTT------TATTCA----------------GAATAAAA---TATCAGAGAAGGTCCAATCTG
gi|16 : TATCGGA-GATTCTGGTAGATTTACTG-----T-ATAGAC-ACCTC-AA--------CA---ATCATATT--A
gi|2 : aTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAAGTTAAATATACTTCACACAAAACTCAGGCA-CAATTGCATCTTAAATTATGATT------TATCTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGTTCGTGTGTA-TTATCAGAGGATTCGTTTCACTT-CTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACTTTTCACTCAGATA-CCT----ATTATCGATTGTCATTTATTGTT-ATGGGGAGATGAATCCAAACAT-GACGATGTAAATCAGCTA-ATTGTTTCCTCTGTTCAAAAG-TATATCGGA-GATTGTAGTAGATTTACTG-----T-AT-GACTACCTCACAT-------CA--TATTATATT--AATC---TTA-CCA-TC-ACATGTGTATTACTTAGTT--TTCTTTCTAATGTAACTAC-A-AATTATCATGTCTACTTATT---GTAATTAGTA-------TATATTGACAGTTGT-TTTAt
gi|3 : tCACCTTATTTTTGTCATGG-AAATAGAAAACTAAACATAATTCACACCAAACTCAGGAA-CAATTGCATCTTGAATTATGATTTACATGTATTTA----------------GAA-AAAA---TATCATAGAAAGTCCAAACTGCTCG---------------GGATTCGTATCATTT-CGTCTTTCAATGTACCAAATATAATA-ATGCCAGAA-T-AATT-TTAAAAGAAATATTTT-ACATTTTATTCATTTA-CCT----ATTGTTGATTGTCGTTTA-CTTTGATGGGGAGATGAATCTAAACAT-GATGATATAAATCAACTA-TTCTTTTCCTCTGTTCAAAA--TTTATCAGA-GATTTTGGTAGATTTACTG-----T-AT-GACTAAC-C-GA--------CA--TCATGTATT--ATTCAAATGA-CC--TT-----------TAC--ATTT--TTCTATCTAATGTAACTATGA-AATTATCATGTCTAC---CT----TA--TAGTAATTA--GTATATTAACAGTTGT-TTTAt
gi|4 : TGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTA-TCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATATAATATA--GATAATATTGAGCACATTTt
gi|5 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaaagtatcaacgaaggaaaattttgttgcataggatttttgctatctatatatctaaagcgtttgacagagtttggcatagataatccattttcaaactaaagatttacggtatttgtgatttacttgagtggctTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TAT-CTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTT-GTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCA---AATATATAGATAATATTGAGCACATTTtga
gi|6 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaagtatcaacgaagaaaattttgttgcataggatttttgctatctatatatctaaagcgttttgacagagtttggcatagataatcattttcaacctaagattacggtatttgtgatctgagctATGGAAACTTAA-CATCATTCACACAAAAGTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTAAATGTAGAAAGAGCCGGGA-GAAAGAGTATTATTGAAAGTCCTAACTGCTCCTGTG-AATTGCCAGAGGACTCGTATCATTTTCTTCTCT--GTGTAACAAA--------------GAAGTGTATTATG--AAAAAATATTTT-ACATTTTACTCA-TT----T----ATTATTGGTTGTCACTCA-CTTTTATGGGTAAATGAAACTAAACATG------ACAAACCAAC-A-TATTTTTCATCTGTTTAAAAG-TGTTTCAGA-GATTCTGGTATATTTACTG-----
gi|7 : ttgtcGAAGTCTTTT-ACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATATTAACCATCTAATTTCTTTTCTCTGTTCAAAAG-TTTATCAGA-GATTCTCGTTGATCTACTGAACATC-AT-GACT-C--------------CA--TGTTTTAT-----TCAAATGATCT--TT-G---GTTTG-AACGTATTTTATTGTATGTAATATA--TAC-A-AATgtacatgtatgattccc
gi|8 : AACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTggattagacaac
gi|9 : TTGTT--CAGAAGTCTTTTTACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATAT-TACCATCTA-ATTTCTTTCTCTGTTCAAAAGTTTTATCAGA-GATTCTCGTTGATCTACTGAACATC-AT-GACT-C--------------CA--TGTTTTAT-----TCAAATGATCT--TT-G---GTTTG-AACGTATTT--TATTGT---ATGTAATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACATATTTTATTGTATATGTAATATATATAAACGGATTAGAAACAAGATCATACAGCTTACGCATTCTTATAAACTAATAGCACACAATTGTCATTGAAAA
Unaligned ( gi|13 ): TTTTATTGTACATGTATATAATATACTCAAAGGATTAGAAACAAGTTCGTACAACTTACTGCATT
Alignments
lowQualScore : 1111 1 33 11 1 11 1 11 222 1 11 222 2222 1 1 1 222 1 1 1 1 11 1 11 222222 5555555555555555 111 222 1 111 1 11 11 2222 111 1 1 11 33333 444444444444444 11111 444444444444 111 333333333 333333
lowQualScore : 0 7 8888 7 3 6 7 7 7 7 44 11 7 1 5 1 1 1 66 1 1 5 1 88 1 1 111 1 5 1 22 1 88 111 4444 1 5 1 5 1 5 1 111 5 5 5 5 1 88 6 3 0 00 8 22 333333 3333333333333333 8 444 3 3 3 777 11 9 0 2 1 000 0 2 2 3 11 6 3 0 22 3 4444 1 666 1 1 1 0 1 2 1 0 00 1 0 5 1 1 5 1 0 00000 5 5 777777777777777 77 0 1 44444 2 666666666666 2 6 7 99 1 2 1 3 222 0 1 333333333 0 333333 0 8
lowQualScore : . . .... . . . . . . . .. .. . . . . . . .. . . . . .. . . ... . . . .. . .. ... .... . . . . . . . ... . . . . . .. . . . .. . .. ...... ................ . ... . . . ... .. . . . . ... . . . . .. . . . .. . .... . ... . . . . . . . . .. . . . . . . . . ..... . . ............... .. . . ..... . ............ . . . .. . . . . ... . . ......... . ...... . .
lowQualScore : 7 3 0000 3 3 7 3 3 3 3 00 00 3 0 5 0 0 0 55 0 0 0 0 55 0 0 000 0 0 0 00 0 00 000 0000 0 5 0 5 0 0 0 000 5 0 0 5 0 55 7 3 2 00 0 22 000000 0000000000000000 0 000 2 8 2 000 55 8 0 5 0 222 0 5 5 8 00 7 5 7 33 0 3333 4 333 4 0 6 6 4 7 7 6 77 0 3 7 9 1 0 4 5 00000 7 0 777777777777777 99 4 0 00000 5 333333333333 5 7 5 22 0 5 4 0 555 8 0 888888888 8 222222 8 0
consensus : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----TAT-GACTACCT--------C-NA-CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
Reference ( family-7924 ) : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----TAT-GACTACCT--------C-CA-CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
gi|1 : TGTAATCGAACACAGAAAGTTATGTATAAGTA---TACTA------TCTCTTTGTAGAACCA-CAGATGCAGCGTGTACCACAGGG-TCAGTTCTTGGCCCTTTGTT-TTTTTGATCTATGTGCA-AACGTAGCTGAAAATATGATATCATTATGTAGACTGTTTGCAGATGAGCATTCATTACAATGTAC--CATCTAATTTATGCA-AATATTGAATACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACTTCATT-TCAGCAATGTCCATTAGAATTCTTGACATCTCACAAGCATTTAGGATTAGTT-TTAGTCGCGATCTTAGTTGG-TTGAATACATTACAGTCTAACA---AAAAAGGCTTATCAAAGATTAG-TCTTCTGAAAAATATAAATACAT--ATCATTTGTAGAAATA---CCTTATCAAAAATGTAT-ACACATTTATTAG-CCATTGCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCAC-CGATTCACCTATACTTAGAGACAGGATTGGGAGCCACTTTCAGAAAAGA-AAGAGTGGCAAAG-TAAATACAATGT
gi|1 : gttcaaagtactaTTAAGTAACTT-AAAAATAATATAAGGAAATCCAC--CAAAACCCC-ACCTTATTTCTCGCACGACAGATAGAAAGTTAATAATAATTCACACAAAACTTAGGCAACAATTGCATCTTAAATTATGATT------TATTTA----------------GAA-GAAA---TAT-ATAGAA-GTCAAAAATGTTCGTGTGGA-TTATCAGAGGATTCGT-TACTTC-CTTCTTTCAATGTTACAAATTAAATAGATGCCAGAAGTGAATTATT--AAGAAATCCTTT-AC-TTTTACTCAGATACCCT----ATTATCGATTGTCATTTA-TGTT-ATGGGAGGATGAATCCAAA-ATGAACGATGTAAATCAACT-ATATATTTTCTCTGTTCAAAAG-TATATCGGAGGATTCTGGTAGATTTACTG-----TAT-GA-TACCT--------A-CA-CATCTATCTTATT--AATCAAAT-A-CCCATCAA---GTGTA-TACTTATTT--TTCTTTCTAAT-TAACTAC-ACAATTATCATGTCTACA--TT---ATGATTA-TA--TA--GTA---TGACAAGTGTGTTTAttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcttaagtaacttaaaaataatataaggaaatccaccaaaaccccaccttatttctcgcacgacagatagaaagttaataataattcacacaaaacttaggcaacaattgcatcttaaattatgatttatttagaagaaatatatagaagtcaaaaatgttcgtgtggattatcagaggattcgttacttccttctttcaatgttacaaattaaatagatgccagaagtgaattattaagaaatcctttacttttactcagataccctattatcgattgtcatttatgttatgggaggatgaatccaaaatgaacgatgtaaatcaactatatattttctctgttcaaaagtatatcggaggattctggtagatttactgtatgatacctacacatctatcttattaatcaaatacccatcaagtgtatacttatttttctttctaattaactacacaattatcatgtctacattatgattatatagtatgacaagtgtgttta
gi|10 : gttcaaagtactatgtaatcgaacacagaaagttatgtataagtatactatctctttgtagaaccacagatgcagcgtgtaccacagggtcagttcttggccctttgtttttttgatctatgtgcaaacgtagctgaaaatatgatatcattatgtagactgtttgcagatgagcattcattacaatgtaccatctaatttatgcaaatattgaatacatttgaatcacgatttaagtatattagacagatatggtcattcaaatggctacttaaatttaatccctctaaaactaaagcatatttttcacactaaggctaaatgtatgctgtctacccaaacttcatttcagcaatgtccattagaattcttgacatctcacaagcatttaggattagttttagtcgcgatcttagttggttgaatacattacagtctaacaaaaaaggcttatcaaagattagtcttctgaaaaatataaatacatatcatttgtagaaataccttatcaaaaatgtatacacatttattagccattgcttgaatacgcttcagttgtttgggatgggtgtgccaatacaattatggaactagaaaagttcaattgtatgcagcgagaattactacaggattactatatatcatcaccgattcacctatacttagagacaggattgggagccactttcagaaaagaaagagtggcaaagtaaatacaatgtttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcTCCGTTTTCTT-----TTATTGATTATCACTTA-C-TT-------AGACGACACTTAGTG-GGATGGTATAAACCAAC--ATATTTTCCCT-TGTTCAAATG-ATAAT--GA-GAT--------ATTTACTGT----TAT-GACTACCTACATGTAAC-AA-CA--TGCTGGATTCAAATCATTTGA-----TA-C---ATGTA-TATCTATTT--TTCTATCT------ATTAC-----TTATCATA-------------GTGATTAGTA--TACTGTATGTTGACAGTTGT-
gi|12 : ATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTgcta
gi|14 : actcataAATGTAACTAT-A-AATTATCATGTCTTC---TTACAGTAATTAGTA-------TATATTGACAGTTAT-ATTA
gi|15 : cAGGCA-CAATTGCATCT-------TGGTT------TATTCA----------------GAATAAAA---TATCAGAGAAGGTCCAATCTG
gi|16 : TATCGGA-GATTCTGGTAGATTTACTG-----TATAGAC-ACCT--------C-AA-CA---ATCATATT--A
gi|2 : aTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAAGTTAAATATACTTCACACAAAACTCAGGCA-CAATTGCATCTTAAATTATGATT------TATCTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGTTCGTGTGTA-TTATCAGAGGATTCGTTTCACTT-CTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACTTTTCACTCAGATA-CCT----ATTATCGATTGTCATTTATTGTT-ATGGGGAGATGAATCCAAACAT-GACGATGTAAATCAGCT-AATTGTTTCCTCTGTTCAAAAG-TATATCGGA-GATTGTAGTAGATTTACTG-----TAT-GACTACCT--------CACATCA--TATTATATT--AATC---TTA-CCA-TC-ACATGTGTATTACTTAGTT--TTCTTTCTAATGTAACTAC-A-AATTATCATGTCTACTTATT---GTAATTAGTA-------TATATTGACAGTTGT-TTTAt
gi|3 : tCACCTTATTTTTGTCATGG-AAATAGAAAACTAAACATAATTCACACCAAACTCAGGAA-CAATTGCATCTTGAATTATGATTTACATGTATTTA----------------GAA-AAAA---TATCATAGAAAGTCCAAACTGCTCG---------------GGATTCGTATCATTT-CGTCTTTCAATGTACCAAATATAATA-ATGCCAGAA-T-AATT-TTAAAAGAAATATTTT-ACATTTTATTCATTTA-CCT----ATTGTTGATTGTCGTTTA-CTTTGATGGGGAGATGAATCTAAACAT-GATGATATAAATCAACT-ATTCTTTTCCTCTGTTCAAAA--TTTATCAGA-GATTTTGGTAGATTTACTG-----TAT-GACTAAC---------C-GA-CA--TCATGTATT--ATTCAAATGA-CC--TT-----------TAC--ATTT--TTCTATCTAATGTAACTATGA-AATTATCATGTCTAC---CT----TA--TAGTAATTA--GTATATTAACAGTTGT-TTTAt
gi|4 : TGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATATAATATA--GATAATATTGAGCACATTTt
gi|5 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaaagtatcaacgaaggaaaattttgttgcataggatttttgctatctatatatctaaagcgtttgacagagtttggcatagataatccattttcaaactaaagatttacggtatttgtgatttacttgagtggctTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTC-TTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCA---AATATATAGATAATATTGAGCACATTTtga
gi|6 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaagtatcaacgaagaaaattttgttgcataggatttttgctatctatatatctaaagcgttttgacagagtttggcatagataatcattttcaacctaagattacggtatttgtgatctgagctATGGAAACTTAA-CATCATTCACACAAAAGTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTAAATGTAGAAAGAGCCGGGA-GAAAGAGTATTATTGAAAGTCCTAACTGCTCCTGTG-AATTGCCAGAGGACTCGTATCATTTTCTTCTCT--GTGTAACAAA--------------GAAGTGTATTATG--AAAAAATATTTT-ACATTTTACTCA-TT----T----ATTATTGGTTGTCACTCA-CTTTTATGGGTAAATGAAACTAAACATG------ACAAACCAAC--ATATTTTTCATCTGTTTAAAAG-TGTTTCAGA-GATTCTGGTATATTTACTG-----
gi|7 : ttgtcGAAGTCTTTT-ACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATATTAACCATCTAATTTCTTTTCTCTGTTCAAAAG-TTTATCAGA-GATTCTCGTTGATCTACTGAACATCAT-GACT-C---------------CA--TGTTTTAT-----TCAAATGATCT--TT-G---GTTTG-AACGTATTTTATTGTATGTAATATA--TAC-A-AATgtacatgtatgattccc
gi|8 : AACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTggattagacaac
gi|9 : TTGTT--CAGAAGTCTTTTTACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATAT-TACCATCT-AATTTCTTTCTCTGTTCAAAAGTTTTATCAGA-GATTCTCGTTGATCTACTGAACATCAT-GACT-C---------------CA--TGTTTTAT-----TCAAATGATCT--TT-G---GTTTG-AACGTATTT--TATTGT---ATGTAATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACATATTTTATTGTATATGTAATATATATAAACGGATTAGAAACAAGATCATACAGCTTACGCATTCTTATAAACTAATAGCACACAATTGTCATTGAAAA
Unaligned ( gi|13 ): TTTTATTGTACATGTATATAATATACTCAAAGGATTAGAAACAAGTTCGTACAACTTACTGCATT
Alignments
lowQualScore : 1111 1 33 11 1 11 1 11 222 1 11 222 2222 1 1 1 222 1 1 1 1 11 1 11 222222 5555555555555555 111 222 1 111 1 11 11 2222 111 1 1 11 33333 444444444444444 11111 444444444444 111 333333333 333333
lowQualScore : 0 7 8888 7 3 6 7 7 7 7 44 11 7 1 5 1 1 1 66 1 1 5 1 88 1 1 111 1 5 1 22 1 88 111 4444 1 5 1 5 1 5 1 111 5 5 5 5 1 88 6 3 0 00 8 22 333333 3333333333333333 8 444 3 3 3 777 11 9 0 2 1 000 0 2 2 3 11 6 3 0 22 3 4444 1 666 1 1 1 0 1 2 1 0 00 1 0 5 1 1 5 1 0 00000 5 5 444444444444444 77 0 1 44444 2 666666666666 2 6 7 99 1 2 1 3 222 0 1 333333333 0 333333 0 8
lowQualScore : . . .... . . . . . . . .. .. . . . . . . .. . . . . .. . . ... . . . .. . .. ... .... . . . . . . . ... . . . . . .. . . . .. . .. ...... ................ . ... . . . ... .. . . . . ... . . . . .. . . . .. . .... . ... . . . . . . . . .. . . . . . . . . ..... . . ............... .. . . ..... . ............ . . . .. . . . . ... . . ......... . ...... . .
lowQualScore : 7 3 0000 3 3 7 3 3 3 3 00 00 3 0 5 0 0 0 55 0 0 0 0 55 0 0 000 0 0 0 00 0 00 000 0000 0 5 0 5 0 0 0 000 5 0 0 5 0 55 7 3 2 00 0 22 000000 0000000000000000 0 000 2 8 2 000 55 8 0 5 0 222 0 5 5 8 00 7 5 7 33 0 3333 4 333 4 0 6 6 4 7 7 6 77 0 3 7 9 1 0 4 5 00000 7 0 999999999999999 99 4 0 00000 5 333333333333 5 7 5 22 0 5 4 0 555 8 0 888888888 8 222222 8 0
consensus : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----TAT-GACTACCT--------C-NA-CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
Reference ( family-7924 ) : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----TAT-GACTACCT--------C-NA-CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
gi|1 : TGTAATCGAACACAGAAAGTTATGTATAAGTA---TACTA------TCTCTTTGTAGAACCA-CAGATGCAGCGTGTACCACAGGG-TCAGTTCTTGGCCCTTTGTT-TTTTTGATCTATGTGCA-AACGTAGCTGAAAATATGATATCATTATGTAGACTGTTTGCAGATGAGCATTCATTACAATGTAC--CATCTAATTTATGCA-AATATTGAATACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACTTCATT-TCAGCAATGTCCATTAGAATTCTTGACATCTCACAAGCATTTAGGATTAGTT-TTAGTCGCGATCTTAGTTGG-TTGAATACATTACAGTCTAACA---AAAAAGGCTTATCAAAGATTAG-TCTTCTGAAAAATATAAATACAT--ATCATTTGTAGAAATA---CCTTATCAAAAATGTAT-ACACATTTATTAG-CCATTGCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCAC-CGATTCACCTATACTTAGAGACAGGATTGGGAGCCACTTTCAGAAAAGA-AAGAGTGGCAAAG-TAAATACAATGT
gi|1 : gttcaaagtactaTTAAGTAACTT-AAAAATAATATAAGGAAATCCAC--CAAAACCCC-ACCTTATTTCTCGCACGACAGATAGAAAGTTAATAATAATTCACACAAAACTTAGGCAACAATTGCATCTTAAATTATGATT------TATTTA----------------GAA-GAAA---TAT-ATAGAA-GTCAAAAATGTTCGTGTGGA-TTATCAGAGGATTCGT-TACTTC-CTTCTTTCAATGTTACAAATTAAATAGATGCCAGAAGTGAATTATT--AAGAAATCCTTT-AC-TTTTACTCAGATACCCT----ATTATCGATTGTCATTTA-TGTT-ATGGGAGGATGAATCCAAA-ATGAACGATGTAAATCAACT-ATATATTTTCTCTGTTCAAAAG-TATATCGGAGGATTCTGGTAGATTTACTG-----TAT-GA-TACCT--------A-CA-CATCTATCTTATT--AATCAAAT-A-CCCATCAA---GTGTA-TACTTATTT--TTCTTTCTAAT-TAACTAC-ACAATTATCATGTCTACA--TT---ATGATTA-TA--TA--GTA---TGACAAGTGTGTTTAttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcttaagtaacttaaaaataatataaggaaatccaccaaaaccccaccttatttctcgcacgacagatagaaagttaataataattcacacaaaacttaggcaacaattgcatcttaaattatgatttatttagaagaaatatatagaagtcaaaaatgttcgtgtggattatcagaggattcgttacttccttctttcaatgttacaaattaaatagatgccagaagtgaattattaagaaatcctttacttttactcagataccctattatcgattgtcatttatgttatgggaggatgaatccaaaatgaacgatgtaaatcaactatatattttctctgttcaaaagtatatcggaggattctggtagatttactgtatgatacctacacatctatcttattaatcaaatacccatcaagtgtatacttatttttctttctaattaactacacaattatcatgtctacattatgattatatagtatgacaagtgtgttta
gi|10 : gttcaaagtactatgtaatcgaacacagaaagttatgtataagtatactatctctttgtagaaccacagatgcagcgtgtaccacagggtcagttcttggccctttgtttttttgatctatgtgcaaacgtagctgaaaatatgatatcattatgtagactgtttgcagatgagcattcattacaatgtaccatctaatttatgcaaatattgaatacatttgaatcacgatttaagtatattagacagatatggtcattcaaatggctacttaaatttaatccctctaaaactaaagcatatttttcacactaaggctaaatgtatgctgtctacccaaacttcatttcagcaatgtccattagaattcttgacatctcacaagcatttaggattagttttagtcgcgatcttagttggttgaatacattacagtctaacaaaaaaggcttatcaaagattagtcttctgaaaaatataaatacatatcatttgtagaaataccttatcaaaaatgtatacacatttattagccattgcttgaatacgcttcagttgtttgggatgggtgtgccaatacaattatggaactagaaaagttcaattgtatgcagcgagaattactacaggattactatatatcatcaccgattcacctatacttagagacaggattgggagccactttcagaaaagaaagagtggcaaagtaaatacaatgtttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcTCCGTTTTCTT-----TTATTGATTATCACTTA-C-TT-------AGACGACACTTAGTG-GGATGGTATAAACCAAC--ATATTTTCCCT-TGTTCAAATG-ATAAT--GA-GAT--------ATTTACTGT----TAT-GACTACCTACATGTAAC-AA-CA--TGCTGGATTCAAATCATTTGA-----TA-C---ATGTA-TATCTATTT--TTCTATCT------ATTAC-----TTATCATA-------------GTGATTAGTA--TACTGTATGTTGACAGTTGT-
gi|12 : ATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTgcta
gi|14 : actcataAATGTAACTAT-A-AATTATCATGTCTTC---TTACAGTAATTAGTA-------TATATTGACAGTTAT-ATTA
gi|15 : cAGGCA-CAATTGCATCT-------TGGTT------TATTCA----------------GAATAAAA---TATCAGAGAAGGTCCAATCTG
gi|16 : TATCGGA-GATTCTGGTAGATTTACTG-----TATAGAC-ACCT--------C-AA-CA---ATCATATT--A
gi|2 : aTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAAGTTAAATATACTTCACACAAAACTCAGGCA-CAATTGCATCTTAAATTATGATT------TATCTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGTTCGTGTGTA-TTATCAGAGGATTCGTTTCACTT-CTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACTTTTCACTCAGATA-CCT----ATTATCGATTGTCATTTATTGTT-ATGGGGAGATGAATCCAAACAT-GACGATGTAAATCAGCT-AATTGTTTCCTCTGTTCAAAAG-TATATCGGA-GATTGTAGTAGATTTACTG-----TAT-GACTACCT--------CACATCA--TATTATATT--AATC---TTA-CCA-TC-ACATGTGTATTACTTAGTT--TTCTTTCTAATGTAACTAC-A-AATTATCATGTCTACTTATT---GTAATTAGTA-------TATATTGACAGTTGT-TTTAt
gi|3 : tCACCTTATTTTTGTCATGG-AAATAGAAAACTAAACATAATTCACACCAAACTCAGGAA-CAATTGCATCTTGAATTATGATTTACATGTATTTA----------------GAA-AAAA---TATCATAGAAAGTCCAAACTGCTCG---------------GGATTCGTATCATTT-CGTCTTTCAATGTACCAAATATAATA-ATGCCAGAA-T-AATT-TTAAAAGAAATATTTT-ACATTTTATTCATTTA-CCT----ATTGTTGATTGTCGTTTA-CTTTGATGGGGAGATGAATCTAAACAT-GATGATATAAATCAACT-ATTCTTTTCCTCTGTTCAAAA--TTTATCAGA-GATTTTGGTAGATTTACTG-----TAT-GACTAAC---------C-GA-CA--TCATGTATT--ATTCAAATGA-CC--TT-----------TAC--ATTT--TTCTATCTAATGTAACTATGA-AATTATCATGTCTAC---CT----TA--TAGTAATTA--GTATATTAACAGTTGT-TTTAt
gi|4 : TGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATATAATATA--GATAATATTGAGCACATTTt
gi|5 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaaagtatcaacgaaggaaaattttgttgcataggatttttgctatctatatatctaaagcgtttgacagagtttggcatagataatccattttcaaactaaagatttacggtatttgtgatttacttgagtggctTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTC-TTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCA---AATATATAGATAATATTGAGCACATTTtga
gi|6 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaagtatcaacgaagaaaattttgttgcataggatttttgctatctatatatctaaagcgttttgacagagtttggcatagataatcattttcaacctaagattacggtatttgtgatctgagctATGGAAACTTAA-CATCATTCACACAAAAGTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTAAATGTAGAAAGAGCCGGGA-GAAAGAGTATTATTGAAAGTCCTAACTGCTCCTGTG-AATTGCCAGAGGACTCGTATCATTTTCTTCTCT--GTGTAACAAA--------------GAAGTGTATTATG--AAAAAATATTTT-ACATTTTACTCA-TT----T----ATTATTGGTTGTCACTCA-CTTTTATGGGTAAATGAAACTAAACATG------ACAAACCAAC--ATATTTTTCATCTGTTTAAAAG-TGTTTCAGA-GATTCTGGTATATTTACTG-----
gi|7 : ttgtcGAAGTCTTTT-ACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATATTAACCATCTAATTTCTTTTCTCTGTTCAAAAG-TTTATCAGA-GATTCTCGTTGATCTACTGAACATCAT-GACT-C---------------CA--TGTTTTAT-----TCAAATGATCT--TT-G---GTTTG-AACGTATTTTATTGTATGTAATATA--TAC-A-AATgtacatgtatgattccc
gi|8 : AACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTggattagacaac
gi|9 : TTGTT--CAGAAGTCTTTTTACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATAT-TACCATCT-AATTTCTTTCTCTGTTCAAAAGTTTTATCAGA-GATTCTCGTTGATCTACTGAACATCAT-GACT-C---------------CA--TGTTTTAT-----TCAAATGATCT--TT-G---GTTTG-AACGTATTT--TATTGT---ATGTAATTA
blockSeqs : A GTAC A . G T A T T TA TA T A A T T A GA G C C T . A T ATC T C G TG A TG TAC . A A C A T G A . . G C T C TA C . AT . TA TACATG AATGTAGAAAGAGCCG T GAG C G T TA AT T T C C TAT . G G A AA T T TT T GCAA T TTG G A T G T A TA A T T G . G AACAT A A CTACATGTAACAA . G TCAAA G CCATCACAT G T C TA A C A G GA T TTACAG TACT .
blockSeqs : A GTA A . G . A T T . . T C . AC . TG . . . . C A T AA GC A . C C TAT . G G A . . A AT C GCAA C CT T T A G C A T T . A G . A AACAT . A CTCACAT . A TAA T TCTTTG G . T . T C A G A A TTATTG ATTA .
blockSeqs : C . TG . . . . C A . . . A . . A . . . . G . . A AT C . T CT . T A C T A T T . T A . G T . A CTCAA . A TAT G TCTTTG T . G . A C A G A A CT . .
blockSeqs : . . . . . . T A . . . A A A . T AA . A A C T A T A . G A . G . . A CCGA . G . G CCTT T . G . A G A A A . G . .
blockSeqs : . A A A . T AA . A C . T T . T . T A . C . . . . . T . G TAC . . . . G . . G .
blockSeqs : . . . T C . A C . . . . T . T A . C . . . . . T . .
blockSeqs : . . . .
blockSeqCons : CTCGA********** ** TA*** CCTTCG****** A** CTG****** C*****
originalCons : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----TAT-GACTACCT--------C-NA-CA--TGTTNTATT--AATCAAATGA-CC--TC-G---GTGTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT---GTAATTAGTA--TA--GTATATTGACAGTTGT-TTTA
finalCons : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----TAT-GACTACCTCGA----------CA--TGTTNTATTA---TCAAATGACCTTCG------GTGTA-TACNTATTT--TTCTNTCTAATGTAACTACA--AATTATCATGTCTACCTG------TAATTAGTAC-----GTATATTGACAGTTGT-TTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACATATTTTATTGTATATGTAATATATATAAACGGATTAGAAACAAGATCATACAGCTTACGCATTCTTATAAACTAATAGCACACAATTGTCATTGAAAA
Unaligned ( gi|13 ): TTTTATTGTACATGTATATAATATACTCAAAGGATTAGAAACAAGTTCGTACAACTTACTGCATT
Alignments
lowQualScore : 1111 1 33 11 1 11 1 11 222 1 11 222 2222 1 1 1 222 1 1 1 1 11 1 11 222222 5555555555555555 111 222 1 111 1 11 11 2222 111 1 1 11 2222222 444444444444444 2222 3333333333333333 111 555555555 44444444
lowQualScore : 0 7 8888 7 3 6 7 7 7 7 44 11 7 1 5 1 1 1 66 1 1 5 1 88 1 1 111 1 5 1 22 1 88 111 4444 1 5 1 5 1 5 1 111 5 5 5 5 1 88 6 3 0 00 8 22 333333 3333333333333333 8 444 3 3 3 777 11 9 0 2 1 000 0 2 2 3 11 6 3 0 22 3 4444 1 666 1 1 1 0 1 2 1 0 00 1 0 5 1 1 5 1 0 6666666 5 5 777777777777777 77 0 1 7777 5 4444444444444444 7 99 1 2 1 3 222 0 1 333333333 55555555 0 8
lowQualScore : . . .... . . . . . . . .. .. . . . . . . .. . . . . .. . . ... . . . .. . .. ... .... . . . . . . . ... . . . . . .. . . . .. . .. ...... ................ . ... . . . ... .. . . . . ... . . . . .. . . . .. . .... . ... . . . . . . . . .. . . . . . . . . ....... . . ............... .. . . .... . ................ . .. . . . . ... . . ......... ........ . .
lowQualScore : 7 3 0000 3 3 7 3 3 3 3 00 00 3 0 5 0 0 0 55 0 0 0 0 55 0 0 000 0 0 0 00 0 00 000 0000 0 5 0 5 0 0 0 000 5 0 0 5 0 55 7 3 2 00 0 22 000000 0000000000000000 0 000 2 8 2 000 55 8 0 5 0 222 0 5 5 8 00 7 5 7 33 0 3333 4 333 4 0 6 6 4 7 7 6 77 0 3 7 9 1 0 4 5 0000000 7 0 444444444444444 99 4 0 0000 2 3333333333333333 5 22 0 5 4 0 555 8 0 444444444 00000000 8 0
consensus : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----T-AT-GACTACCT--------CA-A-CA--TGTTNTATT-A-TCAAATGACCTTC-G---GT----GTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---TT----GTAATTAGTA---T-GTATATTGACAGTTGT-TTTA
Reference ( family-7924 ) : NNNNNNNNNNNNNTGAAATCGAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCAT-TAATATATGGATAATATTGAGCACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACCTCANTATCAGCANTGTCCNTTAGAATTCTTGACGTNTCACAAGCATTTAGGATTAGTNATTAGTCGCGANCTTANTTGGCCTNAATACATTACAGTNTNACAATCAAAAAGGCTTATCAAAGATTNGCTCTTCTGAAAAACANAANNANATTGATCATTTGTAGAAATATACCCTTATCAAAAATGNATAACGCNTTTATTAGACCACTNCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCACGCGANTCACCTATACTTAGAGACAGGATTGGGGGCCACTCTCAGAAAGGAGAAGAGTGGCAAAGCTAAATACGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAACTTTAAAAACAATATGAGGAAACCCNCTACAAAACCCCCACCTTATTTCTGTCACGG-AAATAGAAAGTTAAACATAATTCACACAAAACTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGCTCGTGTG-A-TTATCAGAGGATTCGTATCATTT-CTTCTTTCAATGTANCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACATTTCACTCAGTTATCCT----ATTATCGATTGTCACTTA-CGTT-ATGGGGAGATGAANCTAAACATGGACGATATAAACCAACT-ATNTTTTTCCTCTGTTCAAAAG-TTTATCGGA-GATTCTGGTAGATTTACTG-----T-AT-GACTACCT--------CG-A-CA--TGTTNTATT-A-TCAAATGACCTTC-G---GT----GTA-TACNTATTT--TTCTNTCTAATGTAACTAC-A-AATTATCATGTCTAC---CT----GTAATTAGTA---C-GTATATTGACAGTTGT-TTTA
gi|1 : TGTAATCGAACACAGAAAGTTATGTATAAGTA---TACTA------TCTCTTTGTAGAACCA-CAGATGCAGCGTGTACCACAGGG-TCAGTTCTTGGCCCTTTGTT-TTTTTGATCTATGTGCA-AACGTAGCTGAAAATATGATATCATTATGTAGACTGTTTGCAGATGAGCATTCATTACAATGTAC--CATCTAATTTATGCA-AATATTGAATACATTTGAATCACGATTTAAGTATATTAGACAGATATGGTCATTCAAATGGCTACTTAAATTTAATCCCTCTAAAACTAAAGCATATTTTTCACACTAAGGCTAAATGTATGCTGTCTACCCAAACTTCATT-TCAGCAATGTCCATTAGAATTCTTGACATCTCACAAGCATTTAGGATTAGTT-TTAGTCGCGATCTTAGTTGG-TTGAATACATTACAGTCTAACA---AAAAAGGCTTATCAAAGATTAG-TCTTCTGAAAAATATAAATACAT--ATCATTTGTAGAAATA---CCTTATCAAAAATGTAT-ACACATTTATTAG-CCATTGCTTGAATACGCTTCAGTTGTTTGGGATGGGTGTGCCAATACAATTATGGAACTAGAAAAGTTCAATTGTATGCAGCGAGAATTACTACAGGATTACTATATATCATCAC-CGATTCACCTATACTTAGAGACAGGATTGGGAGCCACTTTCAGAAAAGA-AAGAGTGGCAAAG-TAAATACAATGT
gi|1 : gttcaaagtactaTTAAGTAACTT-AAAAATAATATAAGGAAATCCAC--CAAAACCCC-ACCTTATTTCTCGCACGACAGATAGAAAGTTAATAATAATTCACACAAAACTTAGGCAACAATTGCATCTTAAATTATGATT------TATTTA----------------GAA-GAAA---TAT-ATAGAA-GTCAAAAATGTTCGTGTGGA-TTATCAGAGGATTCGT-TACTTC-CTTCTTTCAATGTTACAAATTAAATAGATGCCAGAAGTGAATTATT--AAGAAATCCTTT-AC-TTTTACTCAGATACCCT----ATTATCGATTGTCATTTA-TGTT-ATGGGAGGATGAATCCAAA-ATGAACGATGTAAATCAACT-ATATATTTTCTCTGTTCAAAAG-TATATCGGAGGATTCTGGTAGATTTACTG-----T-AT-GA-TACCT--------AC-A-CATCTATCTTATTAA-TCAAATACCCATCAA---GT----GTA-TACTTATTT--TTCTTTCTAAT-TAACTAC-ACAATTATCATGTCTACA--TT----ATGATTA-TA---TAGTA---TGACAAGTGTGTTTAttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcttaagtaacttaaaaataatataaggaaatccaccaaaaccccaccttatttctcgcacgacagatagaaagttaataataattcacacaaaacttaggcaacaattgcatcttaaattatgatttatttagaagaaatatatagaagtcaaaaatgttcgtgtggattatcagaggattcgttacttccttctttcaatgttacaaattaaatagatgccagaagtgaattattaagaaatcctttacttttactcagataccctattatcgattgtcatttatgttatgggaggatgaatccaaaatgaacgatgtaaatcaactatatattttctctgttcaaaagtatatcggaggattctggtagatttactgtatgatacctacacatctatcttattaatcaaatacccatcaagtgtatacttatttttctttctaattaactacacaattatcatgtctacattatgattatatagtatgacaagtgtgttta
gi|10 : gttcaaagtactatgtaatcgaacacagaaagttatgtataagtatactatctctttgtagaaccacagatgcagcgtgtaccacagggtcagttcttggccctttgtttttttgatctatgtgcaaacgtagctgaaaatatgatatcattatgtagactgtttgcagatgagcattcattacaatgtaccatctaatttatgcaaatattgaatacatttgaatcacgatttaagtatattagacagatatggtcattcaaatggctacttaaatttaatccctctaaaactaaagcatatttttcacactaaggctaaatgtatgctgtctacccaaacttcatttcagcaatgtccattagaattcttgacatctcacaagcatttaggattagttttagtcgcgatcttagttggttgaatacattacagtctaacaaaaaaggcttatcaaagattagtcttctgaaaaatataaatacatatcatttgtagaaataccttatcaaaaatgtatacacatttattagccattgcttgaatacgcttcagttgtttgggatgggtgtgccaatacaattatggaactagaaaagttcaattgtatgcagcgagaattactacaggattactatatatcatcaccgattcacctatacttagagacaggattgggagccactttcagaaaagaaagagtggcaaagtaaatacaatgtttaaagtttcaatgatttagttccagattatcttaaagataatatttccctctcaactgaaagttatgcatcaaatacatacagaaatagagaggatgtataccctcctaaagttagactaaatatttaagaaatctttgttcctactaatttaaatggaataatataatttacaataagaaataagcctcTCCGTTTTCTT-----TTATTGATTATCACTTA-C-TT-A------GACGACACTTAGTG-GGATGGTATAAACCAAC--ATATTTTCCCT-TGTTCAAATG-ATAAT--GA-GAT--------ATTTACTG-----TTAT-GACTACCTACATGTAACA-A-CA--TGCTGGATT----CAAAT--CATTT-G---ATACATGTA-TATCTATTT--TTCTATCT------ATTAC-----TTATCATA--------------GTGATTAGTATACT-GTATGTTGACAGTTGT-
gi|12 : ATATTATCACGTGAATCAC---TATTTAAAAACAGG-TTGGGGGCCACTCTCAGAAAGGAGAAGAATGGCAAAACTAAATACGATGTgcta
gi|14 : actcataAATGTAACTAT-A-AATTATCATGTCTTC---TTACA-GTAATTAGTA------TATATTGACAGTTAT-ATTA
gi|15 : cAGGCA-CAATTGCATCT-------TGGTT------TATTCA----------------GAATAAAA---TATCAGAGAAGGTCCAATCTG
gi|16 : TATCGGA-GATTCTGGTAGATTTACTG-----T-ATAGAC-ACCT--------CA-A-CA---ATCATATT-A-T
gi|2 : aTTAAGTAACTTTAAAAACAATATGAGGAAACCCCCTACAAAACCCCCACCTCATTTCTGTCACGG-AAATAGAAAGTTAAATATACTTCACACAAAACTCAGGCA-CAATTGCATCTTAAATTATGATT------TATCTA----------------GAA-GAAA---TATCATAGAAAGTCCAAACTGTTCGTGTGTA-TTATCAGAGGATTCGTTTCACTT-CTTCTTTCAATGTACCAAATATAATA-ATGCCAGAAGTGAATTATT--AAGAAATCTTTT-ACTTTTCACTCAGATA-CCT----ATTATCGATTGTCATTTATTGTT-ATGGGGAGATGAATCCAAACAT-GACGATGTAAATCAGCT-AATTGTTTCCTCTGTTCAAAAG-TATATCGGA-GATTGTAGTAGATTTACTG-----T-AT-GACTACCT--------CACATCA--TATTATATTAA-TC---TTACCATC-ACATGT----GTATTACTTAGTT--TTCTTTCTAATGTAACTAC-A-AATTATCATGTCTACTTATT----GTAATTAGTA------TATATTGACAGTTGT-TTTA
gi|3 : tCACCTTATTTTTGTCATGG-AAATAGAAAACTAAACATAATTCACACCAAACTCAGGAA-CAATTGCATCTTGAATTATGATTTACATGTATTTA----------------GAA-AAAA---TATCATAGAAAGTCCAAACTGCTCG---------------GGATTCGTATCATTT-CGTCTTTCAATGTACCAAATATAATA-ATGCCAGAA-T-AATT-TTAAAAGAAATATTTT-ACATTTTATTCATTTA-CCT----ATTGTTGATTGTCGTTTA-CTTTGATGGGGAGATGAATCTAAACAT-GATGATATAAATCAACT-ATTCTTTTCCTCTGTTCAAAA--TTTATCAGA-GATTTTGGTAGATTTACTG-----T-AT-GACTAAC---------CG-A-CA--TCATGTATT-ATTCAAATGACCTT----------------TAC--ATTT--TTCTATCTAATGTAACTATGA-AATTATCATGTCTAC---CTTATAGTAATTA--------GTATATTAACAGTTGT-TTTAt
gi|4 : TGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTACTATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTCTTTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCATATAATATA--GATAATATTGAGCACATTTt
gi|5 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaaagtatcaacgaaggaaaattttgttgcataggatttttgctatctatatatctaaagcgtttgacagagtttggcatagataatccattttcaaactaaagatttacggtatttgtgatttacttgagtggctTGAAATCAAACAGAGAGAGTTATGCATAAACAATCTACTAGTA-TATCTTATTATAGAATCAATAAATGTTG-GTGTACCACAGGGGTCAGTCCTTGGCTC-TTGTTATTTTTTATCTATGTATATGACGTTGCAGAAAATATGATCTAAATATGTAGATTATTTCCAGATGACAACTTATTACAATAAACTTCA---AATATATAGATAATATTGAGCACATTTtga
gi|6 : tattactgtttataaaggatgaatttgccaggtcattctactgtttactagttactcgaaacttatagcattgtgaaagtatcaacgaagaaaattttgttgcataggatttttgctatctatatatctaaagcgttttgacagagtttggcatagataatcattttcaacctaagattacggtatttgtgatctgagctATGGAAACTTAA-CATCATTCACACAAAAGTCAGGCA-CAATTGCATCTTGAATTATGATT------TATTTAAATGTAGAAAGAGCCGGGA-GAAAGAGTATTATTGAAAGTCCTAACTGCTCCTGTG-AATTGCCAGAGGACTCGTATCATTTTCTTCTCT--GTGTAACAAA--------------GAAGTGTATTATG--AAAAAATATTTT-ACATTTTACTCA-TT----T----ATTATTGGTTGTCACTCA-CTTTTATGGGTAAATGAAACTAAACATG------ACAAACCAAC--ATATTTTTCATCTGTTTAAAAG-TGTTTCAGA-GATTCTGGTATATTTACTG-----
gi|7 : ttgtcGAAGTCTTTT-ACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATATTAACCATCTAATTTCTTTTCTCTGTTCAAAAG-TTTATCAGA-GATTCTCGTTGATCTACTGAACATC-AT-GACT-C---------------CA--TGTTTTAT----TCAAATGATCTTT-G---GT----TTG-AACGTATTTTATTGTATGTAATATA--TAC-A-AATgtacatgtatgattccc
gi|8 : AACCTCAATATCAGTATTGTCCTTTAGAATTTTTGACGTATTACAAACATTTAGGATTAGTGATTAGTCATGAGCTTACTTGGCCTTAATACAT--CAATATTACAATCAAAAAGACTTATCAAAAATTTGCTTTTCTAAAAAACAGAATGAAATTGATCATTTGTAGAAATATACTCTT----AAAATGAATAATGCCTTTATTAGACCACTTCTTGAATACGCTTCAGTggattagacaac
gi|9 : TTGTT--CAGAAGTCTTTTTACAATTCACTCAGTTATCATGCAAATTATTTATTGTCACTTA-AATT-ATGGGGAAATGAAACTCAACTTCGATGATAT-TACCATCT-AATTTCTTTCTCTGTTCAAAAGTTTTATCAGA-GATTCTCGTTGATCTACTGAACATC-AT-GACT-C---------------CA--TGTTTTAT----TCAAATGATCTTT-G---GT----TTG-AACGTATTT--TATTGT---ATGTAATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AACATATTTTATTGTATATGTAATATATATAAACGGATTAGAAACAAGATCATACAGCTTACGCATTCTTATAAACTAATAGCACACAATTGTCATTGAAAA
Unaligned ( gi|13 ): TTTTATTGTACATGTATATAATATACTCAAAGGATTAGAAACAAGTTCGTACAACTTACTGCATT