lowQualScore : 2222222222222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111 111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111
lowQualScore : 1 0000000000000 1 66666666666666666 55555 2222 4 1 444444 44 44 2 4 1 2 2 33 3333 2 2 222222 222 3333 1 22 1 1 11 33333 22 2 4 55555 2 3333333 1 1 2 55555 11 4 4 1 55 1 1 22 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222 2 3333333 22222222222222222222222222222222 111111111111111 1 11 111 8888888888 33333 3333 1 44 33333 88888888888888888888888888888 2 111 6666666666666666666 22222 111111 11111 1 5555555555555 3 9999999999999999999 1 3333 1 222 33333333333333333333333333333333333333333333333333333333333333333333333333 2 1 666666666666 1 222 1 2 222222 444444444444 11 2 2 55555555 2222222 1 11 1 8888888888888888 1 111 1 55 8888
lowQualScore : 6 5 2222222222222 6 4 5 4 55555555555555555 11111 1111 0 5 222222 33 33 0 0 5 0 0 55 8888 0 3 999999 333 2222 3 11 2 2 4 44 3 99999 77 0 0 99999 2 0 4444444 2 5 5 0 3 6 00000 77 0 0 5 55 5 7 11 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 666 7 2 1111111 00000000000000000000000000000000 222222222222222 7 3 33 7 666 7777777777 88888 6666 7 5 66 3 55555 0 00000000000000000000000000000 4 111 9999999999999999999 44444 1 8 222222 44444 8 3 3 4444444444444 3 3 3333333333333333333 2 5 2 7777 0 6 888 888 22222222222222222222222222222222222222222222222222222222222222222222222222 2 2 0 444444444444 3 000 0 5 2 3 1 888888 777777777777 77 0 0 2 6 3 99999999 1111111 3 88 3 4444444444444444 0 3 999 6 5 6 55 5555
lowQualScore : . . ............. . . . . ................. ..... .... . . ...... .. .. . . . . . .. .... . . ...... ... .... . .. . . . .. . ..... .. . . ..... . . ....... . . . . . . ..... .. . . . .. . . .. . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ... . . ....... ................................ ............... . . .. . ... .......... ..... .... . . .. . ..... . ............................. . ... ................... ..... . . ...... ..... . . . ............. . . ................... . . . .... . . ... ... .......................................................................... . . . ............ . ... . . . . . ...... ............ .. . . . . . ........ ....... . .. . ................ . . ... . . . .. ....
lowQualScore : 0 0 0000000000000 0 0 0 0 55555555555555555 00000 0000 0 0 000000 00 00 0 0 5 0 0 55 5555 0 0 777777 333 3333 3 77 0 0 0 77 0 00000 55 0 0 00000 5 0 5555555 5 0 0 0 0 0 00000 55 0 0 0 00 0 0 00 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 333 3 0 8888888 88888888888888888888888888888888 777777777777777 3 3 33 3 777 7777777777 00000 0000 3 0 77 2 55555 2 00000000000000000000000000000 0 888 4444444444444444444 55555 0 0 444444 66666 0 0 2 6666666666666 8 2 2222222222222222222 5 0 0 0000 0 7 333 888 88888888888888888888888888888888888888888888888888888888888888888888888888 5 0 0 222222222222 3 777 0 2 5 2 2 000000 555555555555 55 0 0 5 0 0 00000000 7777777 3 33 3 3333333333333333 7 3 777 0 0 0 00 0000
consensus : TGGGGCAAAAAGCACCCCTT-----------AAGCGGAANTTTCANTTNCTAAACATCTNNNTTGCAGTCACAG-CGA-GCTCGATTTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTGACACGAAAGACCACAATTATGTGTAAAACAGGAAAAATTTAATTTTTGTGGCCTTTTTGCCCCATGACCGAGGCAA--AAC-GCC---TAGCAA-G-TGGGGC-AAGT-GCCCACCGTAGGCGTCTTGCCCCACGATANTGGGCGATTTTGCCCCTTNTNGTTAAACATAACAAAAAGCAACTGAAACATGC-ATGAACACACCNGGTAACACGGATCCCAANGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCNAGGGAACACCAGGGCGTTTTAAGNCA-TGATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTCATGNAGACTNTACCTTTTACACATTTTCCTGTTGAANAATCTATTTGATAAACTTTGTGATGANACAAGTTTTAAANT------------------AAAAC--AAT-CGA-ACCATT--AAAATT-GATGAAAGATT-AACGAC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGA----A-TN-ATCAA-GCTTT-CAAAACACAA---TAGCA-TA---TT--AGT-GACTGCTACCTTG--AG---TCTTTTTTTTTTT-ATTTTTCTTTTTGCCA------TNAAATGATAGAT-TG-ATATATCCAACTAATT-ATTATGCTAAAAGGTCGAAANCAAAGTCCCCGNCNTCGCCT-TTCAAAATTT--GCGAAGCTCACTTGAAGGNGGG--ATTGA-G-GG------TAGA-AA-AATTGAATCCACTAAACCACGGAGCAA-GATCCA-A--AA-CCACGGAGC-ACTTA--TTC-AC--TNTA--TGATCCA--AAATCCGCGGAGCTTTTTT-AAAA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAAT-G-TTCTGAAA----GACGA---A-TACGTTTG-TT-CAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTANTT-AGTATACA-AAAAG--TCTACAAGAAAAAA--CGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGCTT-GGATAAAA-TAA-ATNGATAA-GATTTGGACGATACACA----TAGT-T-GTCTTT-CACTTTTT-T----T-TA-A-------ATTTCAGAAACCAT-ATGATATG-ACACGATGGTAGGACAATA-ATCGAT-G-CTA-TT--ATTTNTTAATTTGGATTTTATTGAA-TCTTTAAGGCATTT-TG-TAGCCATTGC--TCT-G-AATANCA-TG-CCCACCAGC--TA-TNTAC-AAATA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGCCG---GG-TACTG-TA----T---CACCCCNGCCCCACCCACNCACNAANAAAACCAAAACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTA--------------TATAGTTGAG-TTCCTT-TTTGGTCCAGGTCTTTGAAGGTACTTTTTCG-TTCGGTTTT
Reference ( gi|1 ) : TGGGGCAAAGAGCCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTATT-ACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTT-AG-TGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAAT-ATGT-TAAAACAGGAAAAATT--A-TTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAA--TAC-GCC---TAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCTTCCCCCATGATAATGGGCGATTTTGCCCTTTTTGGTTAAAC--AAC-AAAAGC-ACTGAAACATGTAATGAACACACCGGGT-ATACGGAT-C-AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAA-CCAAGAGAACAC-----CGTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACACTTTTTTC------AGAATC------------------ATAAT-TAAA----AAAAT------------------AAACC--AATGCAA-ACCATT--AAA-TT-GATGAAAGATTGAACGACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGA----A-TG-ATCAA-GCTTTACAAAAGACAGAAGGAGCA-TA---TT--AAT-GACTGCTACCTTGGAAG---TCTTTTTTTTTTTGA-----------GGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTTATT-TGTTAAGAGGTCGAAACCAAAGTCCCCACCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGGGGGATTGAAAGGGAGGTATTAAAAAAAAATTGAATCCATTCAACCACGGAGCAAAGATCCA-G--AA-CCACGGAGC-ACTTAAGTTC-AC--TGTAAGTGATCCAGAAAATCCGCGGAGCTTTTTTAAAAATGCATGTA-GTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACGA---AATATGTTTG-T--CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTATTTAGGTATACA-AAAAGGATCTACAAG-AAAAA--CAAACTCA-ATATGACATCAGTTGGGTATTTTATATACTT-GGAAACAA-TAA-ATGGATAA-GATTTAGACGATACA------TAGT-TAGTCTTTGCACTTTTT-T----T-TA---------ATTTCAGAAAGCGTAATTATATG-ACACGATGGTGAGACAATA-ATCGATTGCCTAGTT--ATGTGGTAACATGGATTTTAT--AA-TCATTTAGGCATTT-TTTTAGCCATTGCA-TCT-GTAATACCATTG-CCCACCAGC-ATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGCTG---GG-TACTGTTA----T---TACCCCCGCCCC-CCT-CCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTT-TTTAATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTTCTTTTATAGTAGAATCGTTATATCCGTGGAACTTCTGATAGAGTGAA
gi|6 : TGGGGCAAAAAGCACCCCTT-----------AAGCGGAAATTTCATTTGC--A-CATCTAGTT-GCAGTCACAG-CGA-GCTCGATTT-AGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT--AATATCACG--AACATTCGAAG-ACAGATTGACACGAAAGACCACAAT-ATG--TAAAACAGGAAAAATT--ATTTT-GTGGCCTTTTTGCCCCATGACCGAGGCAA--AAC-GCC---TAGCAAGG-TGGGGCAAAGT-GCCCACCATAGGCGTCTTGCCCCATGATAGTGGGCGA-TTTGCCCCTTGTG--TAAACATAAC-AAAAGCAACTAAAAC-----ATGAACACAC
gi|5 : agggtagccATTTTTAAT-TCTAAACAT--CTGTTGCAGTCACAG-CGA-GCTCGATTTTAG-TGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAA-TTTTGTGGCCTTTTTGCCCCATG-CCGAGGCAAAATACAGCC---TAGCAA-GATGGGCA-AAGTG--CCACCATAGGC-TCTATGCCCATGATAATGGGCGATTTGCCCCTTTTTTGT--AAC--AACAAAAAGCAACTGAAACATGC-ATGGACACAGCCGGTAACACGGATCC-AAG-TCGAAGGTTGGATCCAAT-GACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCA-TGATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAagag
gi|6 : GGGGCAA--ATC-GCCCACTATCA----TGGGGC-AAGACGCCTATGGTGGGCACTTTGCCCCACCTTGCTAGGCG-TTTTGCCatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|9 : agggtagcctggggcaaaaagcaccccttaagcggaaatttcatttgcacatctagttgcagtcacagcgagctcgatttaggtgcagattaaaggcgcatgcctaggcttcataatatcacgaacattcgaagacagattgacacgaaagaccacaatatgtaaaacaggaaaaattattttgtggcctttttgccccatgaccgaATGAACACACCGGGT-ATACGAAT-CCAACGTCCGAGGTTGGATCCAATGAAC-GCGGAGCAAAA-CCCAAGGAACAT-----CGTTTTAA-GCA-TGATTAGCTGATTGACttgtgtaaacataacaaaagcaactaaaacatgaacacacagag
gi|5 : catttATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACA--TTTTTC------ATAAT-------------------ATAAAACAAA----AAAATTAACTCTCCCCCTCAAAAAAACCCCAAT-CAA-ACCATT--AAAATT-GATGAAAGATT-AACGAC--AGTAAACAAACAAT-----------TTTTCA-TTAAAA-ACCGGAAAACA-AG-ATTAAGGCTTT
gi|2 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccT-----TATTTTTCATGTA---TCTACCTTTTACACATTTTCCTGTTGAAAAATCTATTTGATAAACTTTGTGATGAT-TAAGTTTTAAACT------------------AAAAC--AATCT----CCATT--AAAATT-GATGAAAGATT-AACGAC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCAC----ATTT-ATCAA---TT--CAAAACACA--------ATTA---TTGAAGT-GACTGCTACCTTG--AGCTTTCTTTTTTTTTTT
gi|3 : T------------------AAAAC--AAT-CG---CCATT--AAAATT-GATGAAAGATT-AACTAC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGA----A-CATAT-AA-GTT---CAAAACACAA---TAGCA-TAGTTCT--AATTGACTGCTACCTAG--AG---TTTTTTTTTC----------------GCCA------TCAAATGATAGAT-TG-ATATATCC--CTAATT-ATT-TGCTAAAAGGTCGAAAACAAAGTCTC-ACCTTTCCCT-T-CAAAATTT--GCAAAATTCA-TTGAAGGGG-----TAGACA-------ATT---------TTGAAGCCAT-AAACCACGGAGCAA-GATCCA-AGAAA-CTACGCAGC-ACTTA--TTC-ACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAAAA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAATATGTTTGTT--CAAAACAATTTAT-TTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTACT--AGTATA-A-AAAAG--TCTACACGAAAAAA--CAAAC---------------------TATT-----TGCAT-GGATAAAA-TAA-ATTGATAA-GATTTGGACAACACA------TAATATTGTCTTT-CACTTCTT-T----T-T----------ATTTCAGAAACCAT-ATGATATG-ACACGATGGTAGGAAAATATAGCGA-TG-CTA-TT--AT-T-GCAATTTAGA-TTTATTGAA-TCTCTAAGGCA--T-CATTAGCCATTGC--TCT-G-AATACCA-TG-TCCACCAGC--TA--TTAC--AATA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGGAG---GG-TACTGTAA----TGAACACCCCtttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|4 : ttaagttttaatcCAACACCAGTCCAAA-TTTGATGAAA-AT--AAC-ACACAGT-AACAATCAATGAAGTAAAC--TTTTCA-TTAAAA-ACCT-A----A-TT-ATCAA----TT-CAAAACACAA---TAGCA--A---TA--AGT-GA-TGC-ACCTTGA------TCTTTTTCTTTTT-ATTTTTCTTTTTGCCA------TAAAAT--TA-AT-T--ATATATCCAA-------ATTATGT-----AGTCGAAACCAAA-TCCCCGACGTCG----TTCAAAATTT--GCGAAGCTTACTTGAAAGCGGG--ATTAA---GGA-----TAGACAATAAATGA-TCCACTCA-CCACGGAGCAA-GATCCA-A--AAACCACGGAGCCACTTA--TTCCAC--TTTA-----TCCA---AATCCGCGGCGCTTTTT---AAATG-ATGTAAGTCTTTTCTTTCA-CA-CTCAAAATACAC-AAT-G-TT---GAA----GACGA---A-TACTTTTG-TTTCAAA-CAACTTATTTTAGAAA--GGG-ATA-CTTTAGA-TCAAC-T--TACTGTATA--TAT-CT-AAAAG--TCTACAAT-AAAA---CAAAC-CATATATGA-ATCAAT--GG-ATTTTCT-TGCTTTGGATACAAATAATATG-ATAAAGATTTA-ACGATACA------T--T-CGTTCTTTCC-CTTTTT-T----T------------ATTTCA-AAACCGTA-TGATATGGACACGATG-TGA--CAATA--TCGAT---CTA-TT--AT-TG-TAATATG-ATCTTAT--GACTC--TTAAGCGTTT-T---A--CATT-C--TCT-G-AATACCTATG-CCCCCCAGCTATA-T-----AAATA-CAC-GCAATCAA-AGTACTTAA-GGTACTGATAGCTG---A--TACT--TA----C---CCCCCCC-CCCC-CCC-CCCACAAAT-------AAACCCTTacatccattaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|2 : acaATTGAAGGGG------TAGAAAAAAATTAGATCCA-TAAACCACGGAGGTATGATCCA-A--AATCCGCGGAGC-c
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatAGATCCATA--AA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGCTTTTTTAA----------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTGA------GACGA---A-TATGTTTG-TT-CACAACAATTTATT-TAAGAAAAGGGGACACTCTTAGACTCAAA-----------TGAGTATACA-AAAG---TCTACAAG-AAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGCTT-GGATAAAA-TAA-ATGGATAA-GATTTGGACGACACG------TAGT-T-GTCTTT-CACTTTTT-TAAAATATATAT------ATTTCAGAAACCAT-ATGATATG-ATACGATTGTAGGACAAT--ATCGA------AGCTAAATTTTTTATTTTGGATTTAATG-AA-TCTTTAAGGCATTTAAGGTAGCTATTGCACTCTAAAAATAACATTGCCCCACCAGC-CTACTCTAC-GAATACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAGTGGCATT---TACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|10 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattAAAAGGGGACACTCTTAGACTCAAATGAATTCTAGT--AGTATATATAAGAG--TCTACAAGAAAAAA--CGAA-TCA-ATATGA-ATCAGT--GGTATTTTATcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|7 : GACTCAAATGAATACTAGT--AGTATATA-AAAA---TCTACAAGAAAAAA--CGAAC-CA-ATATGA-ATCACT--GGTATTTTG-AT-------AAAC---TAA-------AA-GATTTGGAC-ATACACATG--TAGT-T-GTCTTTttgc
gi|8 : TATTTTATTTGCTT-GGATAAAA-TAA-ATCGATAA-GATTTGGAC-ATACACACATGTAGC-T-GTCTTT-CACTTTTTGT----T-TAAAAATATATATTTCAGAAACCAT-ATGATATG-
gi|2 : CAATA--TCGAT-GC-TA-TT--ATTTATT----TTGAATTTATTGAA-TCTTTAAAGCATTT-T---AGCCATTGC--TCT-A-AATAACA-TG-CCTACCAGC--TA-TGGCCAAAA
gi|16 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttATCAA-AGTACCTAATG-TACTGATAGCCG---AG-TACTG-TA----T---TAaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : TGAATCA-T-TAAGATTAACAAAACCTTTTCACGCTA---------------ATAGTTAAGATTCCTTTTTTGGTCCA-GTCTTTGAAGGTACTTTTTCG-TTCGGTTTTaa
gi|12 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaTGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCC-G-TTTAGTCCAGtctg
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTT-TTT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA
Unaligned ( gi|14 ): TTTTTTTGGCCATCAATTGATAGATTGATGTATCCCTGATTAATTTTAA
Unaligned ( gi|15 ): GTAGTAGGGTAGTCTGGGGCAAAAAGCCCCCCCTTAAGCGGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 66666666666 1 111111 33333 1 1 2222 1 1 1 1 2 2 2 33 33 1 222 111 1 1 1 22222 33 1 22 33 1 44444 1 1 2 11 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22 11 22222 1 22222222 1 666666666666666666666666666666666666666666666666666666 1 111 1 222 11 11 2222 333 1 11111 1 333 2222222 555555555555555 222222 1111 222222222 2 1 11 111 222222 11 2 444444444444444444444 3333333333333333 111 1 11 4444444444444444 111 1 66666666666666666 1 1 1 1 222222 2222 1 3333 22222 1111 3333333 66666666666666666666 111 1111 111 1 33333 11 1111 1 111111 1 1 11111 3333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1 11 1 99999999999999999 1 11 1 11 2222
lowQualScore : 3 7 33333333333 1 0 4 666666 99999 3 3 4444 3 6 3 3 7 3 7 0 3 6 7 3 3 0 6 00 99 2 333 666 3 3 6 6 6 3 6 6 1 7 7 1 77777 00 7 7 7 2 2 0 1 44 88 77 2 6 77 6 22222 4 3 0 3 88 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 2 77 88 66666 2 77777777 3 6 555555555555555555555555555555555555555555555555555555 0 0 777 0 000 11 6 0 8 8 11 8 5 8 0 8 0 0 3333 000 0 77777 3 0 111 0 2 3 4444444 3 555555555555555 333333 8 1 3333 666666666 3 2 11 1 6 111 1 000000 88 3 0 3 222222222222222222222 0000000000000000 7 999 0 8 8 99 8 8 0000000000000000 777 0 99999999999999999 3 0 2 0 3 0 0 2 111111 1111 0 2 3 3 66 5 5 1111 6 33333 99 6 6 6 6 1 99 1 5 5 6 0000 6 1 9 9999999 6 6 8 44444444444444444444 8 8 8 77 999 2222 88 999 2222 3 0 0 66 11 8 00000 11 8 5555 1 8 6 8 8 8 8 777777 0 2 33 8 6 0 88888 9999999999999999 99 55 3 1 1 1 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 0 33 0 11111111111111111 0 3 44 5 88 8888
lowQualScore : . . ........... . . . ...... ..... . . .... . . . . . . . . . . . . . . . .. .. . ... ... . . . . . . . . . . . . ..... .. . . . . . . . .. .. .. . . .. . ..... . . . . .. . .......................................................................................... . . .. .. ..... . ........ . . ...................................................... . . ... . ... .. . . . . .. . . . . . . . .... ... . ..... . . ... . . . ....... . ............... ...... . . .... ......... . . .. . . ... . ...... .. . . . ..................... ................ . ... . . . .. . . ................ ... . ................. . . . . . . . . ...... .... . . . . .. . . .... . ..... .. . . . . . .. . . . . .... . . . ....... . . . .................... . . . .. ... .... .. ... .... . . . .. .. . ..... .. . .... . . . . . . . ...... . . .. . . . ..... ................ .. .. . . . . . ............................................................................................................... ... . .. . ................. . . .. . .. ....
lowQualScore : 3 0 33333333333 0 7 0 777777 33333 3 3 7777 3 7 3 3 3 3 3 7 3 7 3 3 7 7 7 77 00 3 333 777 3 3 7 0 7 3 7 0 0 3 3 0 33333 77 3 3 3 5 5 0 0 33 33 77 0 7 77 7 00000 0 3 0 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 55 55 55555 0 77777777 7 0 888888888888888888888888888888888888888888888888888888 8 8 555 0 333 00 0 8 0 0 00 0 0 0 6 0 8 8 6666 444 0 88888 2 0 222 2 5 2 8888888 2 111111111111111 000000 8 0 5555 222222222 7 0 33 0 7 333 0 777777 33 7 7 3 000000000000000000000 2222222222222222 0 222 0 0 0 00 0 0 8888888888888888 000 0 00000000000000000 2 0 0 5 2 0 0 5 555555 2222 0 0 2 2 44 0 7 3333 7 88888 22 7 7 7 7 0 22 4 0 7 7 7777 7 0 3 3333333 7 7 0 00000000000000000000 0 0 8 22 444 2222 88 888 0000 2 6 8 88 88 0 66666 00 0 4444 0 0 0 0 0 0 0 000000 0 5 55 0 0 8 44444 2222222222222222 88 55 5 0 0 0 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 88 0 00000000000000000 0 2 22 0 00 0000
consensus : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TTGCTAAACATCTAG-TTGCAGTCACAG-CGA-GCTCGATTT-AGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAAT-ATATGTAAAACAGGAAAAATT--ATTTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTTTGCCCCTTTTG-GTTAAACA--ACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGTA-TACGGATCC-AACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTCC------ANAATCTA----ATAAAC-TT------AAA-AAGTT-----------TTAAACTAAAA---CAAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-TN-ATCAAG-TTT-CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG---TCTTTTTTTTTTT-ATTTTTTTTTTT--GCCA------TNAAATGATAGAT-TG-ATATATCCAACTAATT-ATT-TGCTAAGAGGTCGAAACCAAAGTCCCCGACGTCGC-CTT-CAAAATTT--GCGAAGTTCA-TTGAA--GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTAAACCACGGAG-CAA-GATCC-A--AAA-CCACGGAG-CACTTA--TT-CAC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA--TAG-TATATA---AAAAG--TCTACAAG-AAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-AT-GAT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGA-TG-CTA-TTATTTNNTAATTTGGATTTTATTGAATCTTTAAGGCA-TTT--T-TAGCCATTG--C-TCT--G-AATACC-ATTG-CCCACCAG-C-TA-TNTAC-AAATA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-G-T-A----T---TACCCCNGCCCCACCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
Reference ( family-780 ) : TGGGGCAAAAAG-CACCCCTT-----------AAGCGGAANTTTCANTTNCTAAACATCTNNNTTGCAGTCACAG-CGA-GCTCGATTTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTGACACGAAAGACCACAATTATGTGTAAAACAGGAAAAATTTAATTTTTGTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCGTAGGCGTCT-TGCCCCACGATANTGGGCGATTTTGCCCCTTNTN-GTTAAACATAACAAAAAGCAACTGAAACATGCA-TGAACACACCNGGTAACACGGATCCCAANGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCNAGGGAACACCAGGGCGTTTTAAGNCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTCATGNAGACTNTACCTTTTACACATTTTCCTGTTGAANAATCTATTTGATAAACTTTGTGATGANACAAGTT-----------TTAAANTAAAA---CAAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-TN-ATCAAGCTTT-CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG---TCTTTTTTTTTTT-ATTTTTCTTTTT--GCCA------TNAAATGATAGAT-TG-ATATATCCAACTAATT-ATTATGCTAAAAGGTCGAAANCAAAGTCCCCGNCNTCGCCTTT-CAAAATTT--GCGAAGCTCACTTGAA--GGNGGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTAAACCACGGAG-CAA-GATCC-A--AAA-CCACGGAG-CACTTA--TT-CAC--TNTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAAT-G-TTCTGAAA----GACG----AA-TACGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTANTTAG-TATACA---AAAAG--TCTACAAG-AAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-ATNGAT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGACAATA-ATCGA-TG-CTA-TTATTTNTTAATTTGGATTTTATTGAATCTTTAAGGCA-TTT--TGTAGCCATTG--C-TCT--G-AATANC-A-TG-CCCACCAG-C-TA-TNTAC-AAATA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-G-T-A----T---CACCCCNGCCCCACCCACNCACNAANAAAACCAAAACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GC--------------TATATAGTTGAG-TTCCTTTTT-GGTCCAGGTCTTTGAAGGTACTTTTTCG-TTCGGTTTT
gi|1 : TGGGGCAAAGAG-CCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTA-TTACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTT--AGTGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAAT-ATGT-TAAAACAGGAAAAATT--ATTT--GTGGCCTTTTTGCCCCATGGCCGAGGCAATAC---GCCTAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCT-TCCCCCATGATAATGGGCGATTTTGCCCTTTTTG-GTTAAACA--ACAAAA-GCA-CTGAAACATGTAATGAACACACCGGGTA-TACGGATC--AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACC-AAGAGAACACC-----GTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACACTTTTTTC------AGAATC------ATAA---TT------AAA-------------------AAAATAAAC---CAATGCAAACCATT--AAA-TTGATGAAAGATTGAACG-ACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGAA-TG-ATCAAGCTTTACAAAAGACAGAAGGAGCATA-TT---AATGACTGCTACCTTGGAAG---TCTTTTTTTTTTTGA-------------GGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTTATT-TGTTAAGAGGTCGAAACCAAAGTCCCCACCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGGGGGATTGA--AAGGGAGGTATTAAAAA-AA-A-A--TTGAATCCATTCAACCACGGAG-CAAAGATCC-A--GAA-CCACGGAG-CACTTAAGTT-CAC--TGTAAGTGATCCAGAAAATCCGCGGAGC-TTTTTTAA------AAATGCATGTAGTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACG----AAATATGTTTGT-CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTATTTAGGTATACA---AAAAGGATCTACAAG-AAAAA-CAAACTCA-ATATGACATCAGTTGGGTATTTTATATAC-TTGGAAA-CAATAA-ATGGAT-AAGATTTAGACGATACA-------TAGTTAGTCTTTGCACTTTTT-T----T---TAA---------TTTCAGAAAGCGTAATTATAT-GACACGATGGTGAGACAATA-ATCGATTGCCTAGTTATGTGGTAACATGGATTTTAT--AATCATTTAGGCATTTT--TTTAGCCATTG--CATCT--GTAATACC-ATTG-CCCACCAG-CATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGC----TGGGTACT-GTT-A----T---TACCCCCGCCC--CCCTCCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTTTTT-AATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTT
gi|10 : AAAAGGGGACACTCTTAGACTCAAATGAATTCTAG-TAG-TATATAT--AAGAG--TCTACAAG-AAAAAACGAAT-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-cttttatagtagaatcgttatatccgtggaacttctgatagagtgaa
gi|12 : TGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCC-GTTT-AGTCCAG
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTTTTT-TGACCA
gi|14 : TTTTTTTG--GCCA------TCAATTGATAGAT-TG-ATGTATCC--CTGATT-A
gi|15 : TGGGGCAAAAAGCCCCCCCTT-----------AAGCGGAAattttaa
gi|16 : gtagtagggtagtcATCAA-AGTACCTAA-TGTACTGATAGC----CGAGTACT-G-T-A----T---TA
gi|2 : TATTTTTCATGTA---TCTACCTTTTACACATTTTCCTGTTGAAAAATCTATTTGATAAACTTTGTGATGAT-TAAGTT-----------TTAAACTAAAA---CAAT-CT--CCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCACATTT-ATCAA---TT-CAAAACACAA---T----TA-TTGA-AGTGACTGCTACCTTG--AGCTTTCTTTTTTTTTTT-TTTTTTTTTTTTTGGCCA------T-AGCTGGTAGaa
gi|2 : tCAATA--TCGA-TG-CTA-TTATTTATT---TTGAATTT-ATTGAATCTTTAAAGCA-TTT--T--AGCCATTG--C-TCT--A-AATAAC-A-TG-CCTACCAG-C-TA-TGGCC-AAAgcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttctttttttttttttttttttttATTGAAGG-----GGTA-----GA-AA-A-AAATTAGATCCA-TAAACCACGGAGGTAT-GATCC-A--AAATCCGCGGAG-Caaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatA-GATCC-AT-AAA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA---------------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTGA------GACG----AA-TATGTTTGTTCACAACAATTTATTTAAGAAAA-GGGGACACTCTTAGACTCAAATGA----------G-TATAC----AAAAG--TCTACAAGAAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-ATGGAT-AAGATTTGGACG--ACAC-G----TAGTT-GTCTTT-CACTTTTT-TAAAATATATAT--------ATTTCAGAAACCATA-TGATAT-GATACGATTGTAGGACAAT--ATCGA-AG-CTA--AATTTTTTATTTTGGA-TTTAATGAATCTTTAAGGCA-TTTAAGGTAGCTATTGCAC-TCTAAA-AATAAC-ATTGCCCCACCAGCC-TACTCTAC-GAATACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAG-T-GGCATT---TACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattTGAATCA-T-TAAGATTAACAAAACCTTTTCACGC--------------TA-ATAGTTAAGATTCCTTTTTTGGTCCAG-TCTTTGAAGGTACTTTTTCG-TTCGGTTTTcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|3 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaAAGTT-----------TTAATCTAAAA---CAAT-CG--CCATT--AAAATTGATGAAAGATT-AACT-AC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGAA-CATAT-AAG--TT-CAAAACACAA---TAGCATAGTTCTAATTGACTGCTACCTAG--AG---TTTTTTTTTC------------------GCCA------TCAAATGATAGAT-TG-ATATATCC--CTAATT-ATT-TGCTAAAAGGTCGAAAACAAAGTCTC--ACCTTTCCCTT-CAAAATTT--GCAAAATTCA-TTGAA--G------------G-----GGTA-----GA-CA-ATT--TTGAAGCCA-TAAACCACGGAG-CAA-GATCC-AAGAAA-CTACGCAG-CACTTA--TT-CACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAA-TATGTTTGTTCAAAACAATTTA-TTTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTAC-TAG-TATA-A---AAAAG--TCTACACG-AAAAAACAAAC--------------------------TATTTGC-ATGGATA-AAATAA-ATTGAT-AAGATTTGGACAACACATAA----TA-TT-GTCTTT-CACTTCTT-T----T---T----------ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGAAAATATAGCGA-TG-CTA-TTATTGC--AATTTAGA-TTTATTGAATCTCTAAGGCA-TCA--T-TAGCCATTG--C-TCT--G-AATACC-A-TG-TCCACCAG-C-TA-T-TAC--AATA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGG----AGGGTACT-G-TAA----TGAACACCCCA----CATCCAtctg
gi|4 : ttACCAGTCCAAATTTGATGAAAA--T-AACACAC--AGT-AACAATCAATGAAGT-AA-ACTTTTCA-TTAAAAA--CCTAA-TT-ATCAA---TT-CAAAACACAA---TAGCA-A-TA---AGTGA-TGC-ACCTTG--A----TCTTTTTCTTTTT-ATTTTTCTTTTT--GCCA------TAAAAT--TA-AT-T--ATATATCCAA-------ATTATG-TA----GTCGAAACCAAA-TCCCCGACGTCG---TT-CAAAATTT--GCGAAGCTTACTTGAA--AGCGGGATTAA--G-----GATA-----GACAATA-A--ATG-ATCCACT-CACCACGGAG-CAA-GATCCAA--AAA-CCACGGAGCCACTTA--TTCCAC--TTT-----ATCC---AAATCCGCGGCGC-TTTTTAAATGATGTAA---------GTCTTTTCTTTC-ACA-CTCAAAATACAC-AAT-G-TT---GAA----GACG----AA-TACTTTTGTTTCAAACAACTTATTTTAGAAA---GGGATACT-TTAGA-TCAACT---TACT-----G-TATATATCTAAAAG--TCTACAAT---AAAACAAAC-CATATATGA-ATCAAT--GG-ATTTT-CTTGCTTTGGATACAAATAATAT-GATAAAGATTT-AACGATACAT------TCGT---TCTTT-CCCTTTTT-T----T--------------ATTTCA-AAACCGTA-TGATATGGACACGAT-GT--GACAAT--ATCGA-T--CTA-TTATT--GTAATAT-GATCTTA-TGACTCTT--AAGCG-TTT--TA----CATT---C-TCT--G-AATACCTA-TG-CCCCCCAG-C-TA-TAT---AAATA-CA-CGCAATCAA-AGTACTTAA-GGTACTGATAGC----T-GATAC-----------T---TACCCCCCCCCCCCCCCCCCACAAATAAACCCttaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : acacaacATTTTTAATT-CTAAACATCTG--TTGCAGTCACAG-CGA-GCTCGATTTTAG-TGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAATTTT-GTGGCCTTTTTGCCCCATG-CCGAGGCAAAATACAGCCTAGCAA-GATGGGCA-AAGTG-CC-ACCATAGGC-TCTATGCCC-ATGATAATGGGCGATTT-GCCCCTTTTTTGT--AACA--ACAAAAAGCAACTGAAACATGCA-TGGACACAGCCGGTAACACGGATCC--AAGTCGAAGGTTGGATCCAATG-ACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAttc
gi|5 : ATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACAT-TTTTC-------ATAATATA------AAAC---------AAAAAAATTAACTCTCCCCCTCAAA--AAAACCCCAAT-CAAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGTAAACAAACAAT-----------TTTTCA-TT-AAAAACCGGAA----AACAAGATTatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|6 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccTGGGGCAAAAAG-CACCCCTT-----------AAGCGGAAATTTCATTTGC---ACATCTAG-TTGCAGTCACAG-CGA-GCTCGATTT-AGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AA-TATCACG-AA-CATTCGAAG-ACAGATTGACACGAAAGACCACAAT---ATGTAAAACAGGAAAAATT--ATTTT-GTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAAGG-TGGGGCAAAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAGTGGGCGA-TTTGCCCCTTGTG---TAAACATAAC-AAAAGCAACTAAAA----CA-TGAACACACaaggcttt
gi|7 : agggtagccGACTCAAATGAATACTAGT-AG-TATATA---AAAA---TCTACAAG-AAAAAACGAAC-CA-ATATGA-ATCACT--GGTATTTT----------GATA-AACTAA--------AAGATTTGGAC-ATACAC-ATG--TAGTT-GTCTTT-agag
gi|8 : TATTTTATTTGC-TTGGATA-AAATAA-ATCGAT-AAGATTTGGAC-ATACAC-ACATGTAGCT-GTCTTT-CACTTTTTGT----T---TAAAAATATATATTTCAGAAACCATA-TGATAT-G
gi|9 : CATTTA-TGAACACACCGGGTA-TACGAATCC-AACGTCCGAGGTTGGATCCAATGAA-CGCGGAGCAAAACCCAA-GGAACAT-----CGTTTTAAG-CAT-GATTAGCTGATTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1 66666666666 1111111 111 1 1 1 1 1 22 22 1 1 22 11 222 111 1 22 1 2 22 1 11 1 1 11 3333333 2 1 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11 22222 1 1111111 1 111111111111111111111111111111111111111111111111111111 1 111 1 222 11 11 2222 222222 11111 1 333 2222222 222 111 222222 1111 33 2 111111 2222 222222 11 1 5555555555555555555555 3333333333333333 111 1 11 4444444444444444 111 1 66666666666666666 1 1 1 2222 2222 1 3333333 111 2222222 3333333 66666666666666666666 111 222 1 111111 11 11 1111 1 111 1 1 11111 222222222222 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 11 1 5555555555555555 1 11 1 11 2222
lowQualScore : 3 33333333333 9999999 333 3 3 3 6 3 6 3 00 00 3 6 7 3 00 6 88 7 6 333 666 3 00 6 3 6 3 11 3 88 7 7 7 2 2 0 3 6 33 6 6 6 6 7777777 6 3 5 1 88 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 88 88 66666 2 5555555 1 3 888888888888888888888888888888888888888888888888888888 0 5 777 0 000 11 6 0 8 8 11 8 5 8 0 8 0 0 3333 111111 77777 3 0 111 0 2 3 4444444 2 0 222 5 444 333333 8 1 3333 00 3 0 111111 6 2222 222222 88 3 3 4444444444444444444444 0000000000000000 7 999 0 8 8 99 8 8 7777777777777777 777 0 99999999999999999 3 0 7 3 0 0 2 6 1111 1111 0 3 3 66 5 5 5555555 4 888 99 6 6 6 6 1 99 1 5 5 6 1111111 6 1 9 9999999 6 6 8 44444444444444444444 8 8 8 77 999 8 8 88 888 1 8 5 66 11 444444 11 11 8 5555 5 8 8 8 8 000 3 8 0 2 33 8 6 0 88888 88 888888888888 1 5 1 0 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 0 33 0 9999999999999999 0 3 11 5 88 3333
lowQualScore : . ........... ....... ... . . . . . . . .. .. . . . . .. . .. . . ... ... . .. . . . . .. . .. . . . . . . . . .. . . . . ....... . . . . .. . ................................................................................. . . .. .. ..... . ....... . . ...................................................... . . ... . ... .. . . . . .. . . . . . . . .... ...... ..... . . ... . . . ....... . . ... . ... ...... . . .... .. . . ...... . .... ...... .. . . ...................... ................ . ... . . . .. . . ................ ... . ................. . . . . . . . . .... .... . . . .. . . ....... . ... .. . . . . . .. . . . . ....... . . . ....... . . . .................... . . . .. ... . . .. ... . . . .. .. ...... .. .. . .... . . . . . ... . . . . .. . . . ..... .. ............ . . . . . ....................................................................................... ... . .. . ................ . . .. . .. ....
lowQualScore : 3 33333333333 7777777 000 3 3 3 7 3 7 3 77 77 3 7 3 3 77 7 33 3 7 333 777 3 00 7 3 7 7 77 3 33 3 3 3 5 5 0 3 7 33 7 7 7 7 0000000 7 3 5 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55 55 55555 0 3333333 0 3 000000000000000000000000000000000000000000000000000000 8 0 555 0 333 00 0 8 0 0 00 0 0 0 6 0 8 8 6666 666666 88888 2 0 222 2 5 2 8888888 5 8 888 6 666 000000 8 0 5555 88 5 0 000000 7 3333 000000 33 7 3 7777777777777777777777 2222222222222222 0 222 0 0 0 00 0 0 8888888888888888 000 0 00000000000000000 2 0 0 2 0 0 5 5 2222 2222 0 2 2 44 0 7 3333333 2 333 22 7 7 7 7 0 22 4 0 7 7 7777777 7 0 3 3333333 7 7 0 00000000000000000000 0 0 8 22 444 0 0 88 888 4 2 8 88 88 888888 00 00 0 4444 8 0 0 0 0 222 8 0 0 5 55 0 0 8 44444 88 000000000000 0 3 0 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 88 0 8888888888888888 0 2 22 0 00 5555
consensus : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTATT-NCTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGA-TTTGCCCCTTTTG-TTA-AAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAA-TT-------AAAAAGTT-----------TTAAACTAAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-TN-ATCAAG-TT--CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG---TCTTTTTTTTTTT-ATTTTTTTTTTC--GCCA------TNAAATGATAGAT-TG-ATATATCCA-CTAATT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-CGTCGC-T-T-CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTAAACCACGGAG-CAA-GATCC-A--AAA-CCACGGAG-CACTTA--TT-CAC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-TA-TTATTT-GTAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATGTA--------TATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
Reference ( family-780 ) : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTATT-GCTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTTTGCCCCTTTTGGTTA-AAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATCTA----ATAAACTT-------AAAAAGTT-----------TTAAACTAAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-TN-ATCAAGTTT--CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG---TCTTTTTTTTTTT-ATTTTTTTTTTT--GCCA------TNAAATGATAGAT-TG-ATATATCCAACTAATT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CGACGTCGCCT-T-CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTAAACCACGGAG-CAA-GATCC-A--AAA-CCACGGAG-CACTTA--TT-CAC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-TA-TTATTTNNTAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCNGCCCCACCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATGTA--------TATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
gi|1 : TGGGGCAAAGAG-CCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTATT-ACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTTAG-TGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAA-TATGT-TAAAACAGGAAAAATT--ATTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAATAC---GCCTAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCT-TCCCCCATGATAATGGGCGATTTTGCCCTTTTTGGTTA-AAC--AACAAAA-GCA-CTGAAACATGTAATGAACACACCGGGT-ATACGGATC-AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACC-AAGAGAACACC-----GTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACAC-TTTTTTC------AGAATC------ATAA--TT-------AAAAA-----------------AA-TAAACC---AATGCAAACCATT--AAA-TTGATGAAAGATTGAACG-ACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGAA-TG-ATCAAGCTTTACAAAAGACAGAAGGAGCATA-TT---AATGACTGCTACCTTGGAAG---TCTTTTTTTTTTTGA-------------GGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTTATTTGTTAAGAGGTCGAAACCAAAGTCCC-CACCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGG-GGGATTGA--AAGGGAGGTATTAAAAA-AA-A-A--TTGAATCCATTCAACCACGGAG-CAAAGATCC-A--GAA-CCACGGAG-CACTTAAGTT-CAC--TGTAAGTGATCCAGAAAATCCGCGGAGC-TTTTTTAA------AAATGCATGTAGTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACG----AAATATGTTTGT-CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTA-TTTAGGTATACA---AAAAGGATCTACAAGAAAA-A-CAAACTCA-ATATGACATCAGTTGGGTATTTTATATAC-TTGGAAA-CAATAA-A-T-GGAT-AAGATTTAGACGATACA-------TAGTTAGTCTTTGCACTTTTT-T----T---TAA---------TTTCAGAAAGCGTAATTATAT-GACACGATGGTGAGACAATA-ATCGATTGCCTAGTTATGTGGTAACATGGATTTTAT--AATCATTTAGGCATTT---TTTTAGCCATTG--CATCT--GTAATACCATTG-CCCACCAG-CATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGC----TGGGTACT-GTTA----TT----ACCCCCGCCCC--CCTCCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTTTTT-AATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTT
gi|10 : AAAAGGGGACACTCTTAGACTCAAATGAATTCTAGT---AGTATATAT--AAGAG--TCTACAAGAAAA-AACGAAT-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-cttttatagtagaatcgttatatccgtggaacttctgatagagtgaa
gi|12 : TGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATGTA--------TATAGTTGGG-TTCC-GTTT-AGTCCAG
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTTTTT-TGACCA
gi|14 : TTTTTTTG--GCCA------TCAATTGATAGAT-TG-ATGTATCC--CTGATTAATTT
gi|15 : TGGGGCAAAAAGCCCCCCCTT-----------AAGCGGAAtaa
gi|16 : gtagtagggtagtcATCAA-AGTACCTAA-TGTACTGATAGC----CGAGTACT-GT-A----TT----A
gi|2 : TATTTTTCATGTA---TCTACCTTTTACACATTTTC-CTGTTGAAAAATCTATTTGATAAACTTTGTGATGATTAAGTT-----------TTAAACTAAAAC---AAT-CT--CCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCACATTT-ATCAA--TT--CAAAACACAA---T----TA-TTGA-AGTGACTGCTACCTTG--AGCTTTCTTTTTTTTTTT-TTTTTTTTTTTTTGGCCA------T-AGCTGGTAGaa
gi|2 : tCAATA--TCGAT-GC-TA-TTATTT----ATTTTGAATTTATTGAATCTTTAAAGCA-TT---TT--AGCCATTG--C-TCT--A-AATAACA-TG-CCTACCAG-C-TA-TGGCCAAA-gcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttctttttttttttttttttttttATTGAAGG-----GGTA-----GA-AA-A-AAATTAGATCCA-TAAACCACGGAGGTAT-GATCC-A--AAATCCGCGGAG-Caaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatA-GATCC-AT-AAA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA---------------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTG--A----GACG----AA-TATGTTTGTTCACAACAATTTATTTAAGAAAA-GGGGACACTCTTAGACTCAAATGA------------GTATACA---AAA-G--TCTACAAGAAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-TGG-AT-AAGATTTGGACG--ACAC-G----TAGTT-GTCTTT-CACTTTTT-TAAAATATATAT--------ATTTCAGAAACCATA-TGATAT-GATACGATTGTAGGACAAT--ATCGAA-GC-TA--AATTTTTTATTTTGGA-TTTAATGAATCTTTAAGGCATTTAAGGT--AGCTATTGCAC-TCTAAA-AATAACATTGCCCCACCAGCC-TACTCTACGAA-TACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAGT-GGCATTT----ACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattTGAATCA-T-TAAGATTAACAAAACCTTTTCACGCTA---------------ATAGTTAAGATTCCTTTTTTGGTCCAG-TCTTTGAAGGTACTTTTTCG-TTCGGTTTTcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|3 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaAAGTT-----------TTAATCTAAAAC---AAT-CG--CCATT--AAAATTGATGAAAGATT-AACT-AC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGAA-CATAT-AAGTT---CAAAACACAA---TAGCATAGTTCTAATTGACTGCTACCTAG--AG---T---------------TTTTT-TTTC--GCCA------TCAAATGATAGAT-TG-ATATATCC--CTAATT-ATTTGCTAAAAGGTCGAAAACAAAGTCTCAC--CTTTCCCT-T-CAAAATTT--GCAAAATTCA-TTGAA---G------------G-----GGTA-----GA-CA-ATT--TTGAAGCCA-TAAACCACGGAG-CAA-GATCC-AAGAAA-CTACGCAG-CACTTA--TT-CACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAA-TATGTTTGTTCAAAACAATTTA-TTTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTACT---AGTATA-A---AAAAG--TCTACACGAAAA-AACAAAC--------------------------TATTTGC-ATGGATA-AAATAA-ATT-G-AT-AAGATTTGGACAACACATAA----TA-TT-GTCTTT-CACTTCTT-T----T---T----------ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGAAAATATAGCGAT-GC-TA-TTATT--GCAATTTAGA-TTTATTGAATCTCTAAGGCATCA---TT--AGCCATTG--C-TCT--G-AATACCA-TG-TCCACCAG-C-TA-T-TAC-AA-TA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGG----AGGGTACT-GT-A----ATGAACACCCCtctg
gi|4 : ttACCAGTCCAAATTTGATGAAAA--T-AACACAC--AGT-AACAATCAATGAAGT-AA-ACTTTTCA-TTAAAAA--CCTAA-TT-ATCAA--TT--CAAAACACAA---TAGCA-A-TA---AGTGA-TGC-ACCTTG--A----TCTTTTTCTTTTT-ATTTTTCTTTTT--GCCA------TAAAAT--TA-AT-T--ATATATCCA---AATT-ATGT-------AGTCGAAACCAAA-TCCC-CGACGTCG--T-T-CAAAATTT--GCGAAGCTTACTTGAA---AGCGGGATTAA--G-----GATA-----GACAATA-A--ATG-ATCCACT-CACCACGGAG-CAA-GATCCAA--AAA-CCACGGAGCCACTTA--TTCCAC--T-----TTATCC---AAATCCGCGGCGC-TTTTTAAATGATGTAA---------GTCTTTTCTTTC-ACA-CTCAAAATACAC-AAT-G-TT---GAA----GACG----AA-TACTTTTGTTTCAAACAACTTATTTTAGAAA---GGGATACT-TTAGA-TCAACT---TACT-------GTATATATCTAAAAG--TCTACAAT--AA-AACAAAC-CATATATGA-ATCAAT--GG-ATTTT-CTTGCTTTGGATACAAATAATA-T-G-ATAAAGATTT-AACGATACAT------TCGT---TCTTT-CCCTTTTT-T----T--------------ATTTCA-AAACCGTA-TGATATGGACACGAT-GT--GACAAT--ATCGAT--C-TA-TTATT--GTAATAT-GATCTTA-TGACTCTT--AAGCG-TT---TT--A--CATT---C-TCT--G-AATACCTATG-CCCCCCAG-C-TA-TAT--AAA-TA-CA-CGCAATCAA-AGTACTTAA-GGTACTGATAGC----T-GATAC----------TT----ACCCCCCCCCCCCCCCCCCACAAATAAACCCacatccattaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : acacaacATTTTTAAT-TCTAAACATCT-GTT-GCAGTCACAG-CGA-GCTCGATTTTAGTGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAATTTTGTGGCCTTTTTGCCCCAT-GCCGAGGCAAAATACAGCCTAGCAA-GATGGGCA-AAGTG--CCACCATAGGC-TCTATG-CCCATGATAATGGGCGA-TTTGCCCCTTTT--TTGTAAC--AACAAAAAGCAACTGAAACATGCA-TGGACACAGCCGGTAACACGGATCCAA-GTCGAAGGTTGGATCCAAT-GACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAttc
gi|5 : ATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACAT-TTTTC--------ATAAT-------ATAAAACA-------AAAAAATTAACTCTCCCCCTCAAA--AAAACCCCAAT-CAAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGTAAACAAACAAT-----------TTTTCA-TT-AAAAACCGGAA----AACAAGATT--atgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|6 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccTGGGGCAAAAAG-CACCCCTT-----------AAGCGGAAATTTCATTTGC---ACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT--AATATCACG--AACATTCGAAG-ACAGATTGACACGAAAGACCACA---ATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAAGG-TGGGGCAAAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAGTGGGCGA-TTTGCCCCTTGTG--TA-AACATAAC-AAAAGCAACTAAAA----CA-TGAACACACaaggcttt
gi|7 : agggtagccGACTCAAATGAATACTAGT---AGTATATA---AAAA---TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCACT--GGTATTTT----------GATA-AACTAA----------AAGATTTGGAC-ATACAC-ATG--TAGTT-GTCTTT-agag
gi|8 : TATTTTATTTGC-TTGGATA-AAATAA-A-TCG-AT-AAGATTTGGAC-ATACAC-ACATGTAGCT-GTCTTT-CACTTTTTGT----T---TAAAAATATATATTTCAGAAACCATA-TGATAT-G
gi|9 : CATTTA-TGAACACACCGGGT-ATACGAATCCAACGTCCGAGGTTGGATCCAATGAA-CGCGGAGCAAAACCCAA-GGAACA-T----CGTTTTAAG-CAT-GATTAGCTGATTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 66666666666 1 111 1 1 1 1 1 22 22 1 1 22 11 222 111 1 22 1 1 22 11 1 1 11 3333333 2 1 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11 22222 1 1111111 1 11111111111111111111111111111111111111111111111111111111111111 111 1 222 11 11 222 111111 11111 1 333 22222222 11 111 222222 1111 222 11 1 11111 222222 222 11 1 5555555555555555555555 3333333333333333 1 1 11 1 3333333333333333 11 1 66666666666666666 1 1 1 2222 2222 1 3333333 111 2222222 3333333 66666666666666666666 111 11 1 1111 1 111111 11 11 1111 1 111 1 1 11111 333333333333 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 11 1 5555555555555555 1 11 1 11 2222
lowQualScore : 3 33333333333 4 7 333 3 3 3 6 3 6 3 00 00 3 6 7 3 00 6 88 7 6 333 666 3 00 6 3 6 3 00 88 7 7 7 2 2 0 3 6 33 6 6 6 6 7777777 6 3 5 1 88 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 88 88 66666 2 5555555 1 3 00000000000000000000000000000000000000000000000000000000000000 777 0 000 11 6 0 8 8 11 8 5 8 0 8 0 0 222 8 444444 77777 3 0 111 0 2 3 88888888 0 66 777 333333 8 1 3333 555 33 0 22222 6 999999 6 333 88 3 3 4444444444444444444444 0000000000000000 3 9 3 3 0 8 99 6 8 5555555555555555 33 3 0 99999999999999999 3 0 7 3 0 0 2 6 1111 1111 0 3 3 66 5 5 5555555 4 888 99 6 6 6 6 1 99 1 5 5 6 1111111 6 1 9 9999999 6 6 8 44444444444444444444 8 8 8 77 999 8 8 11 8 0 3333 1 3 0 0 66 11 444444 11 11 8 5555 5 8 8 8 8 000 3 8 0 2 33 8 6 0 88888 8 666666666666 3 33 0 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 0 33 0 9999999999999999 0 3 11 5 88 3333
lowQualScore : . ........... . . ... . . . . . . . .. .. . . . . .. . .. . . ... ... . .. . . . . .. .. . . . . . . . . .. . . . . ....... . . . . .. . ................................................................................. . . .. .. ..... . ....... . . .............................................................. ... . ... .. . . . . .. . . . . . . . ... . ...... ..... . . ... . . . ........ . .. ... ...... . . .... ... .. . ..... . ...... . ... .. . . ...................... ................ . . . . . . .. . . ................ .. . . ................. . . . . . . . . .... .... . . . .. . . ....... . ... .. . . . . . .. . . . . ....... . . . ....... . . . .................... . . . .. ... . . .. . . .... . . . . .. .. ...... .. .. . .... . . . . . ... . . . . .. . . . ..... . ............ . .. . . ....................................................................................... ... . .. . ................ . . .. . .. ....
lowQualScore : 3 33333333333 0 3 000 3 3 3 7 3 7 3 77 77 3 7 3 3 77 7 33 3 7 333 777 3 00 7 3 7 3 77 33 3 3 3 5 5 0 3 7 33 7 7 7 7 0000000 7 3 5 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55 55 55555 0 3333333 0 3 55555555555555555555555555555555555555555555555555555555555555 555 0 333 00 0 8 0 0 00 0 0 0 6 0 8 8 444 0 222222 88888 2 0 222 2 5 2 00000000 8 55 444 000000 8 0 5555 000 88 0 77777 7 000000 7 333 33 7 3 7777777777777777777777 2222222222222222 2 0 0 2 0 0 00 0 0 8888888888888888 88 2 0 00000000000000000 2 0 0 2 0 0 5 5 2222 2222 0 2 2 44 0 7 3333333 2 333 22 7 7 7 7 0 22 4 0 7 7 7777777 7 0 3 3333333 7 7 0 00000000000000000000 0 0 8 22 444 0 0 00 0 6 2222 4 2 6 8 88 88 888888 00 00 0 4444 8 0 0 0 0 222 8 0 0 5 55 0 0 8 44444 0 000000000000 3 00 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 88 0 8888888888888888 0 2 22 0 00 5555
consensus : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTATT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-TTAT-CAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG---TCTTTTTTTTTTTNTTTTTTTTTTN--GCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
Reference ( family-780 ) : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTATTNCTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAATT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-TNAT-CAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG---TCTTTTTTTTTTTATTTTTTTTTTC--GCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTAAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
gi|1 : TGGGGCAAAGAG-CCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTATTACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTTAG-TGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAA-TATGT-TAAAACAGGAAAAATT--ATTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAATAC---GCCTAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCT-TCCCCCATGATAATGGGCGATTTTGCCCTTTTTGGTTAAAC--AACAAAA-GCA-CTGAAACATGTAATGAACACACCGGGT-ATACGGATC-AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACC-AAGAGAACACC-----GTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACAC-TTTTTTC------AGAATC------ATAA-TT--------AAAAA------AA-T------------AAACC---AATGCAAACCATT--AAA-TTGATGAAAGATTGAACG-ACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGAA-TGAT-CAAGCTTTACAAAAGACAGAAGGAGCATA-TT---AATGACTGCTACCTTGGAAG---TCTTTTTTTTTTTG----------A--GGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTT-ATTTGTTAAGAGGTCGAAACCAAAGTCCC-CA-CCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGG-GGGATTGA--AAGGGAGGTATTAAAAA-AA-A-A--TTGAATCCATTCAACCACGGAG-CAAAGATCCA--GAA-CCACGGAGC-ACTTAAGTTC-AC--TGTAAGTGATCCAGAAAATCCGCGGAGC-TTTTTTAA------AAATGCATGTAGTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACG----AAATATGTTTGT-CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTA-TTTAGGTATACA---AAAAGGATCTACAAGAAAA-A-CAAACTCA-ATATGACATCAGTTGGGTATTTTATATAC-TTGGAAA-CAATAA-A-T-GGAT-AAGATTTAGACGATACA-------TAGTTAGTCTTTGCACTTTTT-T----T---TAA---------TTTCAGAAAGCGTAATTATAT-GACACGATGGTGAGACAATA-ATCGATTGCCT--AGTTATGTGGTAACATGGATTTTAT--AATCATTTAGGCATTT---TTTTAGCCATTG--CATCT--GTAATACCATTG-CCCACCAG-CATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGC----TGGGTACT-GTTA----TT----ACCCCCGCCCC-CC-TCCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTTTTT-AATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTT
gi|10 : AAAAGGGGACACTCTTAGACTCAAATGAATTCTAGT---AGTATATAT--AAGAG--TCTACAAGAAAA-AACGAAT-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-cttttatagtagaatcgttatatccgtggaacttctgatagagtgaa
gi|12 : TGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCC-GTTT-AGTCCAG
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTTTTT-TGACCA
gi|14 : TTTTTTTG--GCCA------TCAATTGATAGAT-TG-ATGTATCC-CTGA--TTAATTT
gi|15 : TGGGGCAAAAAGCCCCCCCTT-----------AAGCGGAAtaa
gi|16 : gtagtagggtagtcATCAA-AGTACCTAA-TGTACTGATAGC----CGAGTACT-GT-A----TT----A
gi|2 : TATTTTTCATGTA---TCTACCTTTTACACATTTTC-CTGTTGAAAAATCTATTTGATAAACTTTGTGATGATTAAGTTTTAAACT------------AAAAC---AAT-CT--CCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCACATTTAT-CAA-TT---CAAAACACAA---T----TA-TTGA-AGTGACTGCTACCTTG--AGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGCCA------T-AGCTGGTAGaa
gi|2 : tCAATA--TCGAT-GC-T--A-TTATTTA-T--TTTGAATTT-ATTGAATCTTTAAAGCA-TT---TT--AGCCATTG--C-TCT--A-AATAACA-TG-CCTACCAG-C-TA-TGGCCAAA-gcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttctttttttttttttttttttttATTGAAGG-----GGTA-----GA-AA-A-AAATTAGATCCA-TAAACCACGGAGGTAT-GATCCA--AAATCCGCGGAGC-aaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatA-GATCCAT-AAA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA---------------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTG--A----GACG----AA-TATGTTTGTTCACAACAATTTATTTAAGAAAA-GGGGACACTCTTAGACTCAAATGA------------GTATACA---AAA-G--TCTACAAGAAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-TGG-AT-AAGATTTGGACG--ACAC-G----TAGTT-GTCTTT-CACTTTTT-TAAAATATATAT--------ATTTCAGAAACCATA-TGATAT-GATACGATTGTAGGACAAT--ATCGAA-GC-TAAA-TTTTTTA-T--TTTGGA-TTTAATGAATCTTTAAGGCATTTAAGGT--AGCTATTGCAC-TCTAAA-AATAACATTGCCCCACCAGCC-TACTCTACGAA-TACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAGT-GGCATTT----ACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattTGAATCA-T-TAAGATTAACAAAACCTTTTCACGCTA---------------ATAGTTAAGATTCCTTTTTTGGTCCAG-TCTTTGAAGGTACTTTTTCG-TTCGGTTTTcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|3 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaAAGTTTTAATCT------------AAAAC---AAT-CG--CCATT--AAAATTGATGAAAGATT-AACT-AC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGAA--CATATAAGTT---CAAAACACAA---TAGCATAGTTCTAATTGACTGCTACCTAG--AG------------------TTTTTTTTTC--GCCA------TCAAATGATAGAT-TG-ATATATCC-CTAA--TT-ATTTGCTAAAAGGTCGAAAACAAAGTCTCACC-T-TTCCCTT---CAAAATTT--GCAAAATTCA-TTGAA---G------------G-----GGTA-----GA-CA-ATT--TTGAAGCCA-TAAACCACGGAG-CAA-GATCCAAGAAA-CTACGCAGC-ACTTA--TTC-ACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAA-TATGTTTGTTCAAAACAATTTA-TTTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTACT---AGTATA-A---AAAAG--TCTACACGAAAA-AACAAAC--------------------------TATTTGC-ATGGATA-AAATAA-ATT-G-AT-AAGATTTGGACAACACATAA----TA-TT-GTCTTT-CACTTCTT-T----T---T----------ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGAAAATATAGCGAT-GC-T--A-TTA-TTG-CAATTTAGA-TTTATTGAATCTCTAAGGCATCA---TT--AGCCATTG--C-TCT--G-AATACCA-TG-TCCACCAG-C-TA-T-TAC-AA-TA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGG----AGGGTACT-GT-A----ATGAACACCCCtctg
gi|4 : ttACCAGTCCAAATTTGATGAAAA--T-AACACAC--AGT-AACAATCAATGAAGT-AA-ACTTTTCA-TTAAAAA--CCTAA-TTAT-CAA-TT---CAAAACACAA---TAGCA-A-TA---AGTGA-TGC-ACCTTG--A----TCTTTTTCTTTTTATTTTTCTTTTT--GCCA------TAAAAT--TA-AT-T--ATATATCCA--AA--TT-ATGTA-------GTCGAAACCAAA-TCCC-CGAC-GTCG-TT---CAAAATTT--GCGAAGCTTACTTGAA---AGCGGGATTAA--G-----GATA-----GACAATA-A--ATGA-TCCACTCA-CCACGGAG-CAA-GATCCA--AAAACCACGGAGCCACTTA--TTCCAC--TTTA-----TCCA--AA-TCCGCGGCGC-TTTTTAAATGATGTAA---------GTCTTTTCTTTCA-CA-CTCAAAATACAC-AAT-G-TT---GAA----GACG----AA-TACTTTTGTTTCAAACAACTTATTTTAGAAA---GGGATACT-TTAGA-TCAACT---TACT-------GTATATATCTAAAAG--TCTACAAT--AA-AACAAAC-CATATATGA-ATCAAT--GG-ATTTT-CTTGCTTTGGATACAAATAATA-T-G-ATAAAGATTT-AACGATACAT------TCGT---TCTTT-CCCTTTTT-T----T--------------ATTTCA-AAACCGTA-TGATATGGACACGAT-GT--GACAAT--ATCGAT--C-T--A-TTA-TTG-TAATAT-GATCTTA-TGACTCTT--AAGCG-TT---TT--A--CATT---C-TCT--G-AATACCTATG-CCCCCCAG-C-TA-TAT--AAA-TA-CA-CGCAATCAA-AGTACTTAA-GGTACTGATAGC----T-GATACT--T-A----C------CCCCCCCCCC-CCCCCCCACAAATAAACCCacatccattaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : acacaacATTTTTAATTCTAAACATCT-GTT-GCAGTCACAG-CGA-GCTCGATTTTAGTGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAATTTTGTGGCCTTTTTGCCCCAT-GCCGAGGCAAAATACAGCCTAGCAA-GATGGGCA-AAGTG--CCACCATAGGC-TCTATG-CCCATGATAATGGGCGATTT-GCCCCTTTTT-TGTAAC--AACAAAAAGCAACTGAAACATGCA-TGGACACAGCCGGTAACACGGATCCAA-GTCGAAGGTTGGATCCAAT-GACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAttc
gi|5 : ATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACAT-TTTTC--------ATAAT-------ATAAAAC--------AAAAAAATT--AACTCTCCCCCTCAAAAAAACCCCAAT-CAAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGTAAACAAACAAT-----------TTTTCA-TT-AAAAACCGGAA---AA-CAAGAT---TAAatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|6 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccTGGGGCAAAAAG-CACCCCTT-----------AAGCGGAAATTTCATT--TGCACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT--AATATCACG--AACATTCGAAG-ACAGATTGACACGAAAGACCACA---ATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAAGG-TGGGGCAAAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAGTGGGCGATTT-GCCCCTTGTG--TAAACATAAC-AAAAGCAACTAAAA----CA-TGAACACACggcttt
gi|7 : agggtagccGACTCAAATGAATACTAGT---AGTATATA---AAAA---TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCACT--GGTATTTT----------GATA-AACTAA----------AAGATTTGGAC-ATACAC-ATG--TAGTT-GTCTTT-agag
gi|8 : TATTTTATTTGC-TTGGATA-AAATAA-A-TCG-AT-AAGATTTGGAC-ATACAC-ACATGTAGCT-GTCTTT-CACTTTTTGT----T---TAAAAATATATATTTCAGAAACCATA-TGATAT-G
gi|9 : CATTTA-TGAACACACCGGGT-ATACGAATCCAACGTCCGAGGTTGGATCCAATGAA-CGCGGAGCAAAACCCAA-GGAACA-T----CGTTTTAAG-CAT-GATTAGCTGATTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 66666666666 1 22 111 1 1 1 1 1 22 22 1 1 22 11 222 111 1 22 1 1 22 11 1 1 11 3333333 2 1 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11 22222 1 1111111 1 00000000000000000000000000000000000000000000000000000000000000 111 1 222 11 11 2222 111111 11111 1 333 333333333 111 222222 1111 222 11 1 11111 222222 222 11 1 5555555555555555555555 3333333333333333 1 1 11 1 3333333333333333 11 1 66666666666666666 1 1 1 2222 2222 1 3333333 111 2222222 3333333 66666666666666666666 111 11 1 1111 1 111111 11 11 1111 1 111 1 1 11111 333333333333 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 11 1 5555555555555555 1 11 1 11 2222
lowQualScore : 3 33333333333 3 00 7 333 3 3 3 6 3 6 3 00 00 3 6 7 3 00 6 88 7 6 333 666 3 00 6 3 6 3 00 88 7 7 7 2 2 0 3 6 33 6 6 6 6 7777777 6 3 5 1 88 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 88 88 66666 2 5555555 1 3 66666666666666666666666666666666666666666666666666666666666666 777 0 000 11 6 0 8 8 11 8 5 8 0 8 0 0 0000 444444 77777 3 0 111 0 2 3 222222222 6 0 666 1 333333 8 1 3333 555 33 0 22222 6 999999 6 333 88 3 3 4444444444444444444444 0000000000000000 3 9 1 3 0 8 99 6 8 5555555555555555 33 3 0 99999999999999999 3 0 7 3 0 0 2 6 1111 1111 0 3 3 66 5 5 5555555 4 888 99 6 6 6 6 1 99 1 5 5 6 1111111 6 1 9 9999999 6 6 8 44444444444444444444 8 8 8 77 999 8 8 11 8 0 3333 1 3 0 0 66 11 444444 11 11 8 5555 5 8 8 8 8 000 3 8 0 2 33 8 6 0 88888 8 666666666666 3 33 0 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 0 33 0 9999999999999999 0 3 11 5 88 3333
lowQualScore : . ........... . .. . ... . . . . . . . .. .. . . . . .. . .. . . ... ... . .. . . . . .. .. . . . . . . . . .. . . . . ....... . . . . .. . ................................................................................. . . .. .. ..... . ....... . . .............................................................. ... . ... .. . . . . .. . . . . . . . .... ...... ..... . . ... . . . ......... . . ... . ...... . . .... ... .. . ..... . ...... . ... .. . . ...................... ................ . . . . . . .. . . ................ .. . . ................. . . . . . . . . .... .... . . . .. . . ....... . ... .. . . . . . .. . . . . ....... . . . ....... . . . .................... . . . .. ... . . .. . . .... . . . . .. .. ...... .. .. . .... . . . . . ... . . . . .. . . . ..... . ............ . .. . . ....................................................................................... ... . .. . ................ . . .. . .. ....
lowQualScore : 3 33333333333 3 00 3 000 3 3 3 7 3 7 3 77 77 3 7 3 3 77 7 33 3 7 333 777 3 00 7 3 7 3 77 33 3 3 3 5 5 0 3 7 33 7 7 7 7 0000000 7 3 5 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55 55 55555 0 3333333 0 3 88888888888888888888888888888888888888888888888888888888888888 555 0 333 00 0 8 0 0 00 0 0 0 6 0 8 8 4444 222222 88888 2 0 222 2 5 2 222222222 5 8 888 0 000000 8 0 5555 000 88 0 77777 7 000000 7 333 33 7 3 7777777777777777777777 2222222222222222 2 0 0 2 0 0 00 0 0 8888888888888888 88 2 0 00000000000000000 2 0 0 2 0 0 5 5 2222 2222 0 2 2 44 0 7 3333333 2 333 22 7 7 7 7 0 22 4 0 7 7 7777777 7 0 3 3333333 7 7 0 00000000000000000000 0 0 8 22 444 0 0 00 0 6 2222 4 2 6 8 88 88 888888 00 00 0 4444 8 0 0 0 0 222 8 0 0 5 55 0 0 8 44444 0 000000000000 3 00 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 88 0 8888888888888888 0 2 22 0 00 5555
consensus : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-T-TATCAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
Reference ( family-780 ) : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-T-TATCAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
gi|1 : TGGGGCAAAGAG-CCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTA-TTACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTTAG-TGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAA-TATGT-TAAAACAGGAAAAATT--ATTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAATAC---GCCTAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCT-TCCCCCATGATAATGGGCGATTTTGCCCTTTTTGGTTAAAC--AACAAAA-GCA-CTGAAACATGTAATGAACACACCGGGT-ATACGGATC-AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACC-AAGAGAACACC-----GTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACAC-TTTTTTC------AGAATC------ATAA-TT--------AAAAA------AA-T------------AAACC---AATGCAAACCATT--AAA-TTGATGAAAGATTGAACG-ACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGAA-T-GATCAAGCTTTACAAAAGACAGAAGGAGCATA-TT---AATGACTGCTACCTTGGAAG-----TCTTTTTTTTTTTG----------AGGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTT-ATTTGTTAAGAGGTCGAAACCAAAGTCCC-CA-CCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGG-GGGATTGA--AAGGGAGGTATTAAAAA-AA-A-A--TTGAATCCATTCAACCACGGAG-CAAAGATCCA--GAA-CCACGGAGC-ACTTAAGTTC-AC--TGTAAGTGATCCAGAAAATCCGCGGAGC-TTTTTTAA------AAATGCATGTAGTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACG----AAATATGTTTGT-CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTA-TTTAGGTATACA---AAAAGGATCTACAAGAAAA-A-CAAACTCA-ATATGACATCAGTTGGGTATTTTATATAC-TTGGAAA-CAATAA-A-T-GGAT-AAGATTTAGACGATACA-------TAGTTAGTCTTTGCACTTTTT-T----T---TAA---------TTTCAGAAAGCGTAATTATAT-GACACGATGGTGAGACAATA-ATCGATTGCCT--AGTTATGTGGTAACATGGATTTTAT--AATCATTTAGGCATTT---TTTTAGCCATTG--CATCT--GTAATACCATTG-CCCACCAG-CATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGC----TGGGTACT-GTTA----TT----ACCCCCGCCCC-CC-TCCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTTTTT-AATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTT
gi|10 : AAAAGGGGACACTCTTAGACTCAAATGAATTCTAGT---AGTATATAT--AAGAG--TCTACAAGAAAA-AACGAAT-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-cttttatagtagaatcgttatatccgtggaacttctgatagagtgaa
gi|12 : TGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCC-GTTT-AGTCCAG
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTTTTT-TGACCA
gi|14 : TTTTTTTGGCCA------TCAATTGATAGAT-TG-ATGTATCC-CTGA--TTAATTT
gi|15 : TGGGGCAAAAAGCCCCCCCTT-----------AAGCGGAAtaa
gi|16 : gtagtagggtagtcATCAA-AGTACCTAA-TGTACTGATAGC----CGAGTACT-GT-A----TT----A
gi|2 : TATTTTTCATGTA---TCTACCTTTTACACATTTTC-CTGTTGAAAAATCTATTTGATAAACTTTGTGATGATTAAGTTTTAAACT------------AAAAC---AAT-CT--CCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCACATT-TATCAA-TT---CAAAACACAA---T----TA-TTGA-AGTGACTGCTACCTTG--AGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGCCA------T-AGCTGGTAGaa
gi|2 : tCAATA--TCGAT-GC-T--A-TTATTTA-T--TTTGAATTT-ATTGAATCTTTAAAGCA-TT---TT--AGCCATTG--C-TCT--A-AATAACA-TG-CCTACCAG-C-TA-TGGCCAAA-gcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttctttttttttttttttttttttATTGAAGG-----GGTA-----GA-AA-A-AAATTAGATCCA-TAAACCACGGAGGTAT-GATCCA--AAATCCGCGGAGC-aaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatA-GATCCAT-AAA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA---------------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTG--A----GACG----AA-TATGTTTGTTCACAACAATTTATTTAAGAAAA-GGGGACACTCTTAGACTCAAATGA------------GTATACA---AAA-G--TCTACAAGAAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-TGG-AT-AAGATTTGGACG--ACAC-G----TAGTT-GTCTTT-CACTTTTT-TAAAATATATAT--------ATTTCAGAAACCATA-TGATAT-GATACGATTGTAGGACAAT--ATCGAA-GC-TAAA-TTTTTTA-T--TTTGGA-TTTAATGAATCTTTAAGGCATTTAAGGT--AGCTATTGCAC-TCTAAA-AATAACATTGCCCCACCAGCC-TACTCTACGAA-TACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAGT-GGCATTT----ACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattTGAATCA-T-TAAGATTAACAAAACCTTTTCACGCTA---------------ATAGTTAAGATTCCTTTTTTGGTCCAG-TCTTTGAAGGTACTTTTTCG-TTCGGTTTTcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|3 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaAAGTTTTAATCT------------AAAAC---AAT-CG--CCATT--AAAATTGATGAAAGATT-AACT-AC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGAA-CATAT-AAGTT---CAAAACACAA---TAGCATAGTTCTAATTGACTGCTACCTAG--AG-----T---------------TTTTTTTTCGCCA------TCAAATGATAGAT-TG-ATATATCC-CTAA--TT-ATTTGCTAAAAGGTCGAAAACAAAGTCTCACC-T-TTCCCTT---CAAAATTT--GCAAAATTCA-TTGAA---G------------G-----GGTA-----GA-CA-ATT--TTGAAGCCA-TAAACCACGGAG-CAA-GATCCAAGAAA-CTACGCAGC-ACTTA--TTC-ACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAA-TATGTTTGTTCAAAACAATTTA-TTTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTACT---AGTATA-A---AAAAG--TCTACACGAAAA-AACAAAC--------------------------TATTTGC-ATGGATA-AAATAA-ATT-G-AT-AAGATTTGGACAACACATAA----TA-TT-GTCTTT-CACTTCTT-T----T---T----------ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGAAAATATAGCGAT-GC-T--A-TTA-TTG-CAATTTAGA-TTTATTGAATCTCTAAGGCATCA---TT--AGCCATTG--C-TCT--G-AATACCA-TG-TCCACCAG-C-TA-T-TAC-AA-TA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGG----AGGGTACT-GT-A----ATGAACACCCCtctg
gi|4 : ttACCAGTCCAAATTTGATGAAAA--T-AACACAC--AGT-AACAATCAATGAAGT-AA-ACTTTTCA-TTAAAAA--CCTAA-T-TATCAA-TT---CAAAACACAA---TAGCA-A-TA---AGTGA-TGC-ACCTTG--A------TCTTTTTCTTTTTATTTTTCTTTTTGCCA------TAAAAT--TA-AT-T--ATATATCCA--AA--TT-ATGTA-------GTCGAAACCAAA-TCCC-CGAC-GTCG-TT---CAAAATTT--GCGAAGCTTACTTGAA---AGCGGGATTAA--G-----GATA-----GACAATA-A--ATGA-TCCACTCA-CCACGGAG-CAA-GATCCA--AAAACCACGGAGCCACTTA--TTCCAC--TTTA-----TCCA--AA-TCCGCGGCGC-TTTTTAAATGATGTAA---------GTCTTTTCTTTCA-CA-CTCAAAATACAC-AAT-G-TT---GAA----GACG----AA-TACTTTTGTTTCAAACAACTTATTTTAGAAA---GGGATACT-TTAGA-TCAACT---TACT-------GTATATATCTAAAAG--TCTACAAT--AA-AACAAAC-CATATATGA-ATCAAT--GG-ATTTT-CTTGCTTTGGATACAAATAATA-T-G-ATAAAGATTT-AACGATACAT------TCGT---TCTTT-CCCTTTTT-T----T--------------ATTTCA-AAACCGTA-TGATATGGACACGAT-GT--GACAAT--ATCGAT--C-T--A-TTA-TTG-TAATAT-GATCTTA-TGACTCTT--AAGCG-TT---TT--A--CATT---C-TCT--G-AATACCTATG-CCCCCCAG-C-TA-TAT--AAA-TA-CA-CGCAATCAA-AGTACTTAA-GGTACTGATAGC----T-GATACT--T-A----C------CCCCCCCCCC-CCCCCCCACAAATAAACCCacatccattaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : acacaacATTTTTAATT-CTAAACATCT-GTT-GCAGTCACAG-CGA-GCTCGATTTTAGTGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAATTTTGTGGCCTTTTTGCCCCAT-GCCGAGGCAAAATACAGCCTAGCAA-GATGGGCA-AAGTG--CCACCATAGGC-TCTATG-CCCATGATAATGGGCGATTT-GCCCCTTTTT-TGTAAC--AACAAAAAGCAACTGAAACATGCA-TGGACACAGCCGGTAACACGGATCCAA-GTCGAAGGTTGGATCCAAT-GACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAttc
gi|5 : ATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACAT-TTTTC--------ATAAT-------ATAAAAC--------AAAAAAATT--AACTCTCCCCCTCAAAAAAACCCCAAT-CAAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGTAAACAAACAAT-----------TTTTCA-TT-AAAAACCGGAA----AACAAGAT---TAAatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|6 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccTGGGGCAAAAAG-CACCCCTT-----------AAGCGGAAATTTCA-TT--TGCACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT--AATATCACG--AACATTCGAAG-ACAGATTGACACGAAAGACCACA---ATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAAGG-TGGGGCAAAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAGTGGGCGATTT-GCCCCTTGTG--TAAACATAAC-AAAAGCAACTAAAA----CA-TGAACACACggcttt
gi|7 : agggtagccGACTCAAATGAATACTAGT---AGTATATA---AAAA---TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCACT--GGTATTTT----------GATA-AACTAA----------AAGATTTGGAC-ATACAC-ATG--TAGTT-GTCTTT-agag
gi|8 : TATTTTATTTGC-TTGGATA-AAATAA-A-TCG-AT-AAGATTTGGAC-ATACAC-ACATGTAGCT-GTCTTT-CACTTTTTGT----T---TAAAAATATATATTTCAGAAACCATA-TGATAT-G
gi|9 : CATTTA-TGAACACACCGGGT-ATACGAATCCAACGTCCGAGGTTGGATCCAATGAA-CGCGGAGCAAAACCCAA-GGAACA-T----CGTTTTAAG-CAT-GATTAGCTGATTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 66666666666 1 22 111 1 1 1 1 1 22 22 1 1 22 11 222 111 1 22 1 1 22 11 1 1 11 3333333 2 1 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11 22222 1 1111111 1 00000000000000000000000000000000000000000000000000000000000000 111 1 222 11 11 2222 111111 11111 1 333 333333333 111 222222 1111 222 11 1 11111 222222 222 11 1 5555555555555555555555 3333333333333333 1 1 11 1 3333333333333333 11 1 66666666666666666 1 1 1 2222 2222 1 3333333 111 2222222 3333333 66666666666666666666 111 11 1 1111 1 111111 11 11 1111 1 111 1 1 11111 333333333333 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 11 1 5555555555555555 1 11 1 11 2222
lowQualScore : 3 33333333333 3 00 7 333 3 3 3 6 3 6 3 00 00 3 6 7 3 00 6 88 7 6 333 666 3 00 6 3 6 3 00 88 7 7 7 2 2 0 3 6 33 6 6 6 6 7777777 6 3 5 1 88 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 88 88 66666 2 5555555 1 3 66666666666666666666666666666666666666666666666666666666666666 777 0 000 11 6 0 8 8 11 8 5 8 0 8 0 0 0000 444444 77777 3 0 111 0 2 3 222222222 6 0 666 1 333333 8 1 3333 555 33 0 22222 6 999999 6 333 88 3 3 4444444444444444444444 0000000000000000 3 9 1 3 0 8 99 6 8 5555555555555555 33 3 0 99999999999999999 3 0 7 3 0 0 2 6 1111 1111 0 3 3 66 5 5 5555555 4 888 99 6 6 6 6 1 99 1 5 5 6 1111111 6 1 9 9999999 6 6 8 44444444444444444444 8 8 8 77 999 8 8 11 8 0 3333 1 3 0 0 66 11 444444 11 11 8 5555 5 8 8 8 8 000 3 8 0 2 33 8 6 0 88888 8 666666666666 3 33 0 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 0 33 0 9999999999999999 0 3 11 5 88 3333
lowQualScore : . ........... . .. . ... . . . . . . . .. .. . . . . .. . .. . . ... ... . .. . . . . .. .. . . . . . . . . .. . . . . ....... . . . . .. . ................................................................................. . . .. .. ..... . ....... . . .............................................................. ... . ... .. . . . . .. . . . . . . . .... ...... ..... . . ... . . . ......... . . ... . ...... . . .... ... .. . ..... . ...... . ... .. . . ...................... ................ . . . . . . .. . . ................ .. . . ................. . . . . . . . . .... .... . . . .. . . ....... . ... .. . . . . . .. . . . . ....... . . . ....... . . . .................... . . . .. ... . . .. . . .... . . . . .. .. ...... .. .. . .... . . . . . ... . . . . .. . . . ..... . ............ . .. . . ....................................................................................... ... . .. . ................ . . .. . .. ....
lowQualScore : 3 33333333333 3 00 3 000 3 3 3 7 3 7 3 77 77 3 7 3 3 77 7 33 3 7 333 777 3 00 7 3 7 3 77 33 3 3 3 5 5 0 3 7 33 7 7 7 7 0000000 7 3 5 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55 55 55555 0 3333333 0 3 88888888888888888888888888888888888888888888888888888888888888 555 0 333 00 0 8 0 0 00 0 0 0 6 0 8 8 4444 222222 88888 2 0 222 2 5 2 222222222 5 8 888 0 000000 8 0 5555 000 88 0 77777 7 000000 7 333 33 7 3 7777777777777777777777 2222222222222222 2 0 0 2 0 0 00 0 0 8888888888888888 88 2 0 00000000000000000 2 0 0 2 0 0 5 5 2222 2222 0 2 2 44 0 7 3333333 2 333 22 7 7 7 7 0 22 4 0 7 7 7777777 7 0 3 3333333 7 7 0 00000000000000000000 0 0 8 22 444 0 0 00 0 6 2222 4 2 6 8 88 88 888888 00 00 0 4444 8 0 0 0 0 222 8 0 0 5 55 0 0 8 44444 0 000000000000 3 00 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 88 0 8888888888888888 0 2 22 0 00 5555
consensus : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-T-TATCAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
Reference ( family-780 ) : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-T-TATCAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
gi|1 : TGGGGCAAAGAG-CCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTA-TTACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTTAG-TGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAA-TATGT-TAAAACAGGAAAAATT--ATTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAATAC---GCCTAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCT-TCCCCCATGATAATGGGCGATTTTGCCCTTTTTGGTTAAAC--AACAAAA-GCA-CTGAAACATGTAATGAACACACCGGGT-ATACGGATC-AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACC-AAGAGAACACC-----GTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACAC-TTTTTTC------AGAATC------ATAA-TT--------AAAAA------AA-T------------AAACC---AATGCAAACCATT--AAA-TTGATGAAAGATTGAACG-ACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGAA-T-GATCAAGCTTTACAAAAGACAGAAGGAGCATA-TT---AATGACTGCTACCTTGGAAG-----TCTTTTTTTTTTTG----------AGGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTT-ATTTGTTAAGAGGTCGAAACCAAAGTCCC-CA-CCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGG-GGGATTGA--AAGGGAGGTATTAAAAA-AA-A-A--TTGAATCCATTCAACCACGGAG-CAAAGATCCA--GAA-CCACGGAGC-ACTTAAGTTC-AC--TGTAAGTGATCCAGAAAATCCGCGGAGC-TTTTTTAA------AAATGCATGTAGTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACG----AAATATGTTTGT-CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTA-TTTAGGTATACA---AAAAGGATCTACAAGAAAA-A-CAAACTCA-ATATGACATCAGTTGGGTATTTTATATAC-TTGGAAA-CAATAA-A-T-GGAT-AAGATTTAGACGATACA-------TAGTTAGTCTTTGCACTTTTT-T----T---TAA---------TTTCAGAAAGCGTAATTATAT-GACACGATGGTGAGACAATA-ATCGATTGCCT--AGTTATGTGGTAACATGGATTTTAT--AATCATTTAGGCATTT---TTTTAGCCATTG--CATCT--GTAATACCATTG-CCCACCAG-CATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGC----TGGGTACT-GTTA----TT----ACCCCCGCCCC-CC-TCCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTTTTT-AATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTT
gi|10 : AAAAGGGGACACTCTTAGACTCAAATGAATTCTAGT---AGTATATAT--AAGAG--TCTACAAGAAAA-AACGAAT-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-cttttatagtagaatcgttatatccgtggaacttctgatagagtgaa
gi|12 : TGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCC-GTTT-AGTCCAG
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTTTTT-TGACCA
gi|14 : TTTTTTTGGCCA------TCAATTGATAGAT-TG-ATGTATCC-CTGA--TTAATTT
gi|15 : TGGGGCAAAAAGCCCCCCCTT-----------AAGCGGAAtaa
gi|16 : gtagtagggtagtcATCAA-AGTACCTAA-TGTACTGATAGC----CGAGTACT-GT-A----TT----A
gi|2 : TATTTTTCATGTA---TCTACCTTTTACACATTTTC-CTGTTGAAAAATCTATTTGATAAACTTTGTGATGATTAAGTTTTAAACT------------AAAAC---AAT-CT--CCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCACATT-TATCAA-TT---CAAAACACAA---T----TA-TTGA-AGTGACTGCTACCTTG--AGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGCCA------T-AGCTGGTAGaa
gi|2 : tCAATA--TCGAT-GC-T--A-TTATTTA-T--TTTGAATTT-ATTGAATCTTTAAAGCA-TT---TT--AGCCATTG--C-TCT--A-AATAACA-TG-CCTACCAG-C-TA-TGGCCAAA-gcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttctttttttttttttttttttttATTGAAGG-----GGTA-----GA-AA-A-AAATTAGATCCA-TAAACCACGGAGGTAT-GATCCA--AAATCCGCGGAGC-aaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatA-GATCCAT-AAA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA---------------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTG--A----GACG----AA-TATGTTTGTTCACAACAATTTATTTAAGAAAA-GGGGACACTCTTAGACTCAAATGA------------GTATACA---AAA-G--TCTACAAGAAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-TGG-AT-AAGATTTGGACG--ACAC-G----TAGTT-GTCTTT-CACTTTTT-TAAAATATATAT--------ATTTCAGAAACCATA-TGATAT-GATACGATTGTAGGACAAT--ATCGAA-GC-TAAA-TTTTTTA-T--TTTGGA-TTTAATGAATCTTTAAGGCATTTAAGGT--AGCTATTGCAC-TCTAAA-AATAACATTGCCCCACCAGCC-TACTCTACGAA-TACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAGT-GGCATTT----ACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattTGAATCA-T-TAAGATTAACAAAACCTTTTCACGCTA---------------ATAGTTAAGATTCCTTTTTTGGTCCAG-TCTTTGAAGGTACTTTTTCG-TTCGGTTTTcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|3 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaAAGTTTTAATCT------------AAAAC---AAT-CG--CCATT--AAAATTGATGAAAGATT-AACT-AC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGAA-CATAT-AAGTT---CAAAACACAA---TAGCATAGTTCTAATTGACTGCTACCTAG--AG-----T---------------TTTTTTTTCGCCA------TCAAATGATAGAT-TG-ATATATCC-CTAA--TT-ATTTGCTAAAAGGTCGAAAACAAAGTCTCACC-T-TTCCCTT---CAAAATTT--GCAAAATTCA-TTGAA---G------------G-----GGTA-----GA-CA-ATT--TTGAAGCCA-TAAACCACGGAG-CAA-GATCCAAGAAA-CTACGCAGC-ACTTA--TTC-ACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAA-TATGTTTGTTCAAAACAATTTA-TTTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTACT---AGTATA-A---AAAAG--TCTACACGAAAA-AACAAAC--------------------------TATTTGC-ATGGATA-AAATAA-ATT-G-AT-AAGATTTGGACAACACATAA----TA-TT-GTCTTT-CACTTCTT-T----T---T----------ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGAAAATATAGCGAT-GC-T--A-TTA-TTG-CAATTTAGA-TTTATTGAATCTCTAAGGCATCA---TT--AGCCATTG--C-TCT--G-AATACCA-TG-TCCACCAG-C-TA-T-TAC-AA-TA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGG----AGGGTACT-GT-A----ATGAACACCCCtctg
gi|4 : ttACCAGTCCAAATTTGATGAAAA--T-AACACAC--AGT-AACAATCAATGAAGT-AA-ACTTTTCA-TTAAAAA--CCTAA-T-TATCAA-TT---CAAAACACAA---TAGCA-A-TA---AGTGA-TGC-ACCTTG--A------TCTTTTTCTTTTTATTTTTCTTTTTGCCA------TAAAAT--TA-AT-T--ATATATCCA--AA--TT-ATGTA-------GTCGAAACCAAA-TCCC-CGAC-GTCG-TT---CAAAATTT--GCGAAGCTTACTTGAA---AGCGGGATTAA--G-----GATA-----GACAATA-A--ATGA-TCCACTCA-CCACGGAG-CAA-GATCCA--AAAACCACGGAGCCACTTA--TTCCAC--TTTA-----TCCA--AA-TCCGCGGCGC-TTTTTAAATGATGTAA---------GTCTTTTCTTTCA-CA-CTCAAAATACAC-AAT-G-TT---GAA----GACG----AA-TACTTTTGTTTCAAACAACTTATTTTAGAAA---GGGATACT-TTAGA-TCAACT---TACT-------GTATATATCTAAAAG--TCTACAAT--AA-AACAAAC-CATATATGA-ATCAAT--GG-ATTTT-CTTGCTTTGGATACAAATAATA-T-G-ATAAAGATTT-AACGATACAT------TCGT---TCTTT-CCCTTTTT-T----T--------------ATTTCA-AAACCGTA-TGATATGGACACGAT-GT--GACAAT--ATCGAT--C-T--A-TTA-TTG-TAATAT-GATCTTA-TGACTCTT--AAGCG-TT---TT--A--CATT---C-TCT--G-AATACCTATG-CCCCCCAG-C-TA-TAT--AAA-TA-CA-CGCAATCAA-AGTACTTAA-GGTACTGATAGC----T-GATACT--T-A----C------CCCCCCCCCC-CCCCCCCACAAATAAACCCacatccattaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : acacaacATTTTTAATT-CTAAACATCT-GTT-GCAGTCACAG-CGA-GCTCGATTTTAGTGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAATTTTGTGGCCTTTTTGCCCCAT-GCCGAGGCAAAATACAGCCTAGCAA-GATGGGCA-AAGTG--CCACCATAGGC-TCTATG-CCCATGATAATGGGCGATTT-GCCCCTTTTT-TGTAAC--AACAAAAAGCAACTGAAACATGCA-TGGACACAGCCGGTAACACGGATCCAA-GTCGAAGGTTGGATCCAAT-GACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAttc
gi|5 : ATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACAT-TTTTC--------ATAAT-------ATAAAAC--------AAAAAAATT--AACTCTCCCCCTCAAAAAAACCCCAAT-CAAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGTAAACAAACAAT-----------TTTTCA-TT-AAAAACCGGAA----AACAAGAT---TAAatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|6 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccTGGGGCAAAAAG-CACCCCTT-----------AAGCGGAAATTTCA-TT--TGCACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT--AATATCACG--AACATTCGAAG-ACAGATTGACACGAAAGACCACA---ATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAAGG-TGGGGCAAAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAGTGGGCGATTT-GCCCCTTGTG--TAAACATAAC-AAAAGCAACTAAAA----CA-TGAACACACggcttt
gi|7 : agggtagccGACTCAAATGAATACTAGT---AGTATATA---AAAA---TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCACT--GGTATTTT----------GATA-AACTAA----------AAGATTTGGAC-ATACAC-ATG--TAGTT-GTCTTT-agag
gi|8 : TATTTTATTTGC-TTGGATA-AAATAA-A-TCG-AT-AAGATTTGGAC-ATACAC-ACATGTAGCT-GTCTTT-CACTTTTTGT----T---TAAAAATATATATTTCAGAAACCATA-TGATAT-G
gi|9 : CATTTA-TGAACACACCGGGT-ATACGAATCCAACGTCCGAGGTTGGATCCAATGAA-CGCGGAGCAAAACCCAA-GGAACA-T----CGTTTTAAG-CAT-GATTAGCTGATTGAC
blockSeqs : C . A C A CTA . . . G . G . A A C G A G AT G TA T G ACA GA A C G A C . T AT A A A C G . A C CG G C C G CCAGGGC C . . A TA T A G . AA CCATA C AAGAC C A CTGTTGAAAAATCTATTTGATAAACTTTGTGATGATTAAGTTTTAAACT CCC . AAA CC A . C . A G . T TTT GTT TA T G CTA C T AGCTTTC T TTT G . C T TG CT . A CTAAA G ACCT C . . A C AGCGGGATTAAG GAAAAAAA A C A A G . AG T C TTCACATTATAAC . A T TGATGTAA A C C T G G C A . AATT . T T AA C A AGTA T TCT . A . T . G . T A T C ATGG A G G CACATG . . G TTAAAAATATATA . G T AG ATA . . AA . T CAA T G T TT TA TTTAAG . CA . AAA T C C . C GGC A . C G GG T G TGAAC A GGCATTT A TA C AT A AC C TACATGTA A T TG . AG TCG
blockSeqs : . . . . A CT . . . G . G . . . . G . . . G . T . . GG . . . . . . . . . A A C T . . C G . . C . TC . . T GTAT T . ATAATATAAAACAAAAAAATTAACTCTCCCCCTCAAA . . T . A . . . . G . . CAT GAT TA T . GA C T AG C ATT G . C C TG CT . . . . CGAC . . . G . GG GACAATAA A . A A . . T A . TTCCACTTTA . A . AA A . T T . . C G . . . T T AA C G ACTA C T . . . . . G . T A . . ATTG . G A CATG . . . AAAATATATATA . . G AG A . . . . T TAA T G T AT TA TCA . . . A A . . . . CTA G . . G GC . . C . AATGAAC . CC C TT . . . TA . T A
blockSeqs : . . . . . G . T . . . . . . . TT TT T . . . . . A . . C . A A T A . . GACAATT . . C . . . . . . GTA . . . . . . . . . . . . . . . T . A G A AGTA T . . . . . . A . T A . . TATG . G G TAA . . . TTA . . . . A . . . . . T T A . TT TA TT . . . G . . . . . TA A . . . T . . A . ATT T . . . . . . T
blockSeqs : . A . . . . . . . . TT T . . A . . . . . . . . T . . . . . . C . T A . . ATCG . G . CG . . . TA . . A . . . . . T A . . T . TT . . . G . . . . . AT . . . . T . AC
blockSeqs : . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . .
blockSeqCons : ** CT** TT**** ****** AGTA*** ** ** CAG**** TA****************** A** T*** TT TT**** ** G*** AT**********
originalCons : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-T-TATCAAGTT---CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T---AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACAC-A----TAGTT-GTCTTT-CACTTTTT-T----T---TAA--------ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-ATCGAT-GC-T--A-TTATTTG-TAATTTGGATTTTATTGAATCTTTAAGGCATTT---TT--AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A----TT----ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
finalCons : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAACT--ATCAATT----CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTAGTA---GTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACACAG----TAGTT-GTCTTT-CACTTTTT-TTA------------------TTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA--TCGAT-GC-T--A-TTATTTGT---TTTGGATTTTATTGAATCTTTAAGGCATT----TT--AGCCATTG--C-TCTG---AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GTAT----------ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 66666666666 1 22 111 1 1 1 1 1 22 22 1 1 22 11 222 111 1 22 1 1 22 11 1 1 11 3333333 2 1 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11 22222 1 1111111 1 00000000000000000000000000000000000000000000000000000000000000 111 1 222 11 11 222 111 1 11111 1 333 33333333333 11 222222 1111 222 11 1 11111 222222 222 11 1 5555555555555555555555 3333333333333333 1 1 11 1 3333333333333333 11 1 66666666666666666 1 1 1 2222 2222 1 111111 111 2222222 333333 77777777777777 11 11 1 2222222 1 22222222 11 1111 1 111 1 1 11111 3333333333 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 11 1 5555555555555555 1 11 1 11 2222
lowQualScore : 3 33333333333 3 00 7 333 3 3 3 6 3 6 3 00 00 3 6 7 3 00 6 88 7 6 333 666 3 00 6 3 6 3 00 88 7 7 7 2 2 0 3 6 33 6 6 6 6 7777777 6 3 5 1 88 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 88 88 66666 2 5555555 1 3 66666666666666666666666666666666666666666666666666666666666666 777 0 000 11 6 0 8 8 11 8 5 8 0 8 0 0 000 777 0 77777 3 0 111 0 2 3 55555555555 0 33 1 333333 8 1 3333 555 33 0 22222 6 999999 6 333 88 3 3 4444444444444444444444 0000000000000000 3 9 1 3 0 8 99 6 8 5555555555555555 33 3 0 99999999999999999 3 0 7 3 0 0 2 6 1111 1111 0 3 3 66 5 5 999999 4 888 99 6 6 6 6 1 99 1 5 5 6 1111111 6 1 9 444444 6 6 8 8 55555555555555 8 8 8 77 8 11 8 8 11 8 0 8888888 3 0 0 66 11 8 22222222 11 8 5555 5 8 8 8 8 000 3 8 0 2 33 8 6 0 88888 8 4444444444 3 33 0 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 0 33 0 9999999999999999 0 3 11 5 88 3333
lowQualScore : . ........... . .. . ... . . . . . . . .. .. . . . . .. . .. . . ... ... . .. . . . . .. .. . . . . . . . . .. . . . . ....... . . . . .. . ................................................................................. . . .. .. ..... . ....... . . .............................................................. ... . ... .. . . . . .. . . . . . . . ... ... . ..... . . ... . . . ........... . .. . ...... . . .... ... .. . ..... . ...... . ... .. . . ...................... ................ . . . . . . .. . . ................ .. . . ................. . . . . . . . . .... .... . . . .. . . ...... . ... .. . . . . . .. . . . . ....... . . . ...... . . . . .............. . . . .. . .. . . .. . . ....... . . . .. .. . ........ .. . .... . . . . . ... . . . . .. . . . ..... . .......... . .. . . ....................................................................................... ... . .. . ................ . . .. . .. ....
lowQualScore : 3 33333333333 3 00 3 000 3 3 3 7 3 7 3 77 77 3 7 3 3 77 7 33 3 7 333 777 3 00 7 3 7 3 77 33 3 3 3 5 5 0 3 7 33 7 7 7 7 0000000 7 3 5 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55 55 55555 0 3333333 0 3 88888888888888888888888888888888888888888888888888888888888888 555 0 333 00 0 8 0 0 00 0 0 0 6 0 8 8 000 555 0 88888 2 0 222 2 5 2 88888888888 8 88 0 000000 8 0 5555 000 88 0 77777 7 000000 7 333 33 7 3 7777777777777777777777 2222222222222222 2 0 0 2 0 0 00 0 0 8888888888888888 88 2 0 00000000000000000 2 0 0 2 0 0 5 5 2222 2222 0 2 2 44 0 7 555555 2 333 22 7 7 7 7 0 22 4 0 7 7 7777777 7 0 3 333333 7 7 0 0 00000000000000 0 0 8 22 0 00 0 0 00 0 6 4444444 2 6 8 88 88 0 00000000 00 0 4444 8 0 0 0 0 222 8 0 0 5 55 0 0 8 44444 0 1111111111 3 00 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 88 0 8888888888888888 0 2 22 0 00 5555
consensus : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-T-TATCAA---TT-CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTA-T--AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACACA---GTAGTT-GTCTTT-CACTT-TTT-T--AA-A-----T--ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-T--CGAT-GC-T--A-TTATTTGTAATT---TGGATTTTATTGAATCTTTAAGGCATT-T----T---AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A-----T-ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
Reference ( family-780 ) : TGGGGCAAAAAG-CCCCCCTT-----------AAGCGGAATTTTTA-TT-CTAAACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATTCGAAG-ACAGATTGACAC-AAAGACCACAA-TATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGGCCGAGGCAAAAC---GCCTAGCAA-G-TGGGGC-AAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAATGGGCGATTT-GCCCCTTTTG-TTAAAC--AACAAAAAGCAACTGAAACATGCA-TGAACACACCGGGT-ATACGGATCCAACGTCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACCCAAGGGAACACC----CGTTTTAAG-CAT-GATTAGCTGATTGACCATGCATATTNGATTTTAATNTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATNCGTGTTTAGCAGNTTGGGAATTAATAACTCCATATATTTTTCAT-TAGACTATACNTTTTACAC-TTTTC-C------ANAATC------ATAAANT--------AAAAAGTTTTAAACT------------AAAAC---AAT-CGAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAATGAAGTGAA-AATTTTCA-TTAAAAAACCCGAA-C-TATCAA---TT-CAAAACACAA---TAGCATA-TT---AGTGACTGCTACCTTG--AG-----TCTTTTTTTTTTTNTTTTTTTTTTNGCCA------TNAAATGATAGAT-TG-ATATATCCACTAA--TT-ATTTGCTAAGAGGTCGAAACCAAAGTCCC-CG-C-GTCGCTT---CAAAATTT--GCGAAGTTCA-TTGAA---GG-GGGATTGA--G-----GGTA-----GA-AA-A-A--TTGAATCCACTNAACCACGGAG-CAA-GATCCA--AAA-CCACGGAGC-ACTTA--TTC-AC--TGTAA-TGATCCA--AAATCCGCGGAGC-TTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCAAAGTACACTAAT-G-TTCTGGAA----GACG----AA-TATGTTTGTTCAAAACAATTTATTTTAGAAAAAGGGGACACTCTTAGACTCAAATGAATACTAGT--AGTATATA---AAAAG--TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-T-G-AT-AAGATTTGGACGATACACA---GTAGTT-GTCTTT-CACTT-TTT-T-----------T--ATTTCAGAAACCGTA-TGATAT-GACACGATGGTAGGACAATA-T--CGAT-GC-T--A-TTATTTGT--TT---TGGATTTTATTGAATCTTTAAGGCATT-T----T---AGCCATTG--C-TCT--G-AATACCATTG-CCCACCAG-C-TA-TNTACAAA-TA-CAGAGNAATCAA-AGTACTTAA-GGTACTGATAGC----CGGGTACT-GT-A-----T-ACCCCCGCCCC-CCCNCCCGCAAATAAAACCAAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCCTTTTT-AGTCCAGGTCCTTGAAGGTACTTTTTCGTTTCGGTTTT
gi|1 : TGGGGCAAAGAG-CCCCCCCCCCCCCCCTGGGAAGTGGAATTTGTA-TTACTAA-CAT--AGTTTGCAGTCACAGGCGAAGCTCGATTTAG-TGCAGATTAGAAGGAGCAT-CCTAAGGCTTCATTAAATATCACGGAAACATTCGAAG-ACA-ATTGACAC-AAAGACCACAA-TATGT-TAAAACAGGAAAAATT--ATTT-GTGGCCTTTTTGCCCCATGGCCGAGGCAATAC---GCCTAGCAA-G-TGGGGC-AAGTGGCCCACCATAGGCGTCT-TCCCCCATGATAATGGGCGATTTTGCCCTTTTTGGTTAAAC--AACAAAA-GCA-CTGAAACATGTAATGAACACACCGGGT-ATACGGATC-AAC-TCCGAGGTTGGATCCAATGGACCGCGGAGCAAAACC-AAGAGAACACC-----GTTTTAAGGCATTGATTAGCTGATTGACCATGCATATTCGATTT--ATGTTACATATATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTGTTTAGCAGTTTGGGAATTAAT--CT-----TATTTTT-AT-TAGACTATACATTTTACAC-TTTTTTC------AGAATC------ATAA-TT--------AAAAA------AA-T------------AAACC---AATGCAAACCATT--AAA-TTGATGAAAGATTGAACG-ACCAAGT-AACAAACAATGAAGTGAAGAATTTTCA-TTAAAATACCCGAA-T-GATCAAGCTTTACAAAAGACAGAAGGAGCATA-TT---AATGACTGCTACCTTGGAAG-----TCTTTTTTTTTTTG----------AGGCACGAGAGTAAAATGATAGATATGGATATATCCAACAAATTT-ATTTGTTAAGAGGTCGAAACCAAAGTCCC-CA-CCGTCGCGTGTACAAAATTTTTGCTAAGTTCA-TTGAAAGGGG-GGGATTGA--AAGGGAGGTATTAAAAA-AA-A-A--TTGAATCCATTCAACCACGGAG-CAAAGATCCA--GAA-CCACGGAGC-ACTTAAGTTC-AC--TGTAAGTGATCCAGAAAATCCGCGGAGC-TTTTTTAA------AAATGCATGTAGTCTTTTCTTTCAACA-TTCAAAATACACTAAT-G-TTCTGGAATCTTGACG----AAATATGTTTGT-CAAAACAATGTATGGTAGAAAAAGGGTATA-TCTTAGACTCAAA-GAATACTATTTAGGTATACA---AAAAGGATCTACAAGAAAA-A-CAAACTCA-ATATGACATCAGTTGGGTATTTTATATAC-TTGGAAA-CAATAA-A-T-GGAT-AAGATTTAGACGATACA------TAGTTAGTCTTTGCACTT-TTT-T-----------TTAATTTCAGAAAGCGTAATTATAT-GACACGATGGTGAGACAATAAT--CGATTGCCT--AGTTATGTGG--TAACATGGATTTTAT--AATCATTTAGGCATT-T----TTTTAGCCATTG--CATCT--GTAATACCATTG-CCCACCAG-CATA-TTTACAAAATA-CAGAGGAATCAA-AGTACTTAACGGTACTGATAGC----TGGGTACT-GTTA-----TTACCCCCGCCCC-CC-TCCCGCAAATAAAA--AAAACCCTTATCATGCGTTAATGCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTGAATCA-T-ACATATTA-CAAA--CTATTCA-GCTACATGTACTATATTATATAGTTGGG-TTCCTTTTT-AATCCAGGTCCTTGA--GTACTTTT--GTTTCGGTTTT
gi|10 : AAAAGGGGACACTCTTAGACTCAAATGAATTCTAGT--AGTATATAT--AAGAG--TCTACAAGAAAA-AACGAAT-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-cttttatagtagaatcgttatatccgtggaacttctgatagagtgaa
gi|12 : TGAATCAAT-ACAGATTA-CAAA--CTATTCA-GCTACATG--------TATATAGTTGGG-TTCC-GTTT-AGTCCAG
gi|13 : TGAATCA-TTACAGGTTA-TAAA--CTATTCA-GC----------------TATAGTTGAG-TTCCTTTTT-TGACCA
gi|14 : TTTTTTTGGCCA------TCAATTGATAGAT-TG-ATGTATCC-CTGA--TTAATTT
gi|15 : TGGGGCAAAAAGCCCCCCCTT-----------AAGCGGAAtaa
gi|16 : gtagtagggtagtcATCAA-AGTACCTAA-TGTACTGATAGC----CGAGTACT-GT-A-----T-
gi|2 : TATTTTTCATGTA---TCTACCTTTTACACATTTTC-CTGTTGAAAAATCTATTTGATAAACTTTGTGATGATTAAGTTTTAAACT------------AAAAC---AAT-CT--CCATT--AAAATTGATGAAAGATT-AACG-AC--AGT-AACAAACAAGGAAGTGAA-AATTTTCATTTAAAAAACCCACATT-TATCAA---TT-CAAAACACAA---T----TA-TTGA-AGTGACTGCTACCTTG--AGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGCCA------T-AGCTGGTAGtaaa
gi|2 : tCAATA-T--CGAT-GC-T--A-TTATTTAT--TT---TGAATTT-ATTGAATCTTTAAAGCATT-T----T---AGCCATTG--C-TCT--A-AATAACA-TG-CCTACCAG-C-TA-TGGCCAAA-gcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttctttttttttttttttttttttATTGAAGG-----GGTA-----GA-AA-A-AAATTAGATCCA-TAAACCACGGAGGTAT-GATCCA--AAATCCGCGGAGC-aaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatA-GATCCAT-AAA-CCACGGAG------------------GTA--TGATCCA--AAATCCGCGGAGC-TTTTTTAA---------------------TTACATTCAACACTTCAAAG-ACACTAAT-GGTTCTG--A----GACG----AA-TATGTTTGTTCACAACAATTTATTTAAGAAAA-GGGGACACTCTTAGACTCAAATGA-----------GTATACA---AAA-G--TCTACAAGAAAAAAACGAAC-CA-ATATGA-ATCAGT--GGTATTTTATTTGC-TTGGATA-AAATAA-A-TGG-AT-AAGATTTGGACGACAC------GTAGTT-GTCTTT-CACTT-TTT-TAAAATATATA-T--ATTTCAGAAACCATA-TGATAT-GATACGATTGTAGGACAATA-T--CGAA-GC-TAAA-TTTTTTAT--TT---TGGA-TTTAATGAATCTTTAAGGCATT-TAAGGT---AGCTATTGCAC-TCTAAA-AATAACATTGCCCCACCAGCC-TACTCTACGAA-TACCAGAGGAATCAATAGTACTTAAGGGTAC-GATAGCTGAACGGTTACTAGT-GGCATTT-ACCCCAGCCCCACCTACACACCAAAAAAACCAAAACCCTTttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|2 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattTGAATCA-T-TAAGATTAACAAAACCTTTTCACGCTA---------------ATAGTTAAGATTCCTTTTTTGGTCCAG-TCTTTGAAGGTACTTTTTCG-TTCGGTTTTcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaatgaatcattaagattaacaaaaccttttcacgctaatagttaagattccttttttggtccagtctttgaaggtactttttcgttcggtttttctg
gi|3 : ttatttttcatgtatctaccttttacacattttcctgttgaaaaatctatttgataaactttgtgatgattaagttttaaactaaaacaatctccattaaaattgatgaaagattaacgacagtaacaaacaaggaagtgaaaattttcatttaaaaaacccacatttatcaattcaaaacacaattattgaagtgactgctaccttgagctttcttttttttttttttttttttttttggccatagctggtaggcatgttatttagagcaatggctaaaatgctttaaagattcaataaattcaaaataaataatagcatcgatattgaaggggtagaaaaaaattagatccataaaccacggaggtatgatccaaaatccgcggagcttttttaattacattcaacacttcaaagacactaatggttctgagacgaatatgtttgttcacaacaatttatttaagaaaaggggacactcttagactcaaatgagtatacaaaagtctacaagaaaaaaacgaaccaatatgaatcagtggtattttatttgcttggataaaataaatggataagatttggacgacacgtagttgtctttcacttttttaaaatatatatatttcagaaaccatatgatatgatacgattgtaggacaatatcgaagctaaattttttattttggatttaatgaatctttaaggcatttaaggtagctattgcactctaaaaataacattgccccaccagcctactctacgaataccagaggaatcaatagtacttaagggtacgatagctgaacggttactagtggcatttaccccagccccacctacacaccaaaaaaaccaaaacccttcgtagctatttccatattaaatatttgccttcaggccagtcaatattgataaaatccttctcttgtacaacacttcttacaaAAGTTTTAATCT------------AAAAC---AAT-CG--CCATT--AAAATTGATGAAAGATT-AACT-AC--AGT-AACAAACATTGAACTGAA-AATTTTCA-TTAAAAAACCTGAA-CATATAAG---TT-CAAAACACAA---TAGCATAGTTCTAATTGACTGCTACCTAG--AG--------------------TTTTTTTTTCGCCA------TCAAATGATAGAT-TG-ATATATCC-CTAA--TT-ATTTGCTAAAAGGTCGAAAACAAAGTCTCACC-T-TTCCCTT---CAAAATTT--GCAAAATTCA-TTGAA---G------------G-----GGTA-----GA-CA-ATT--TTGAAGCCA-TAAACCACGGAG-CAA-GATCCAAGAAA-CTACGCAGC-ACTTA--TTC-ACATTATAACTGATTCA--AAATCCGCAGAACTTTTTTTAA------AA---------GTCTTTTCTTTCAACA-TTCGAAGCACACTAATGG-TTCTGAAA----GATGAATTAA-TATGTTTGTTCAAAACAATTTA-TTTAGAAAAATGCGACACTGTTAGACTCAAATGAGTACTACT--AGTATA-A---AAAAG--TCTACACGAAAA-AACAAAC--------------------------TATTTGC-ATGGATA-AAATAA-ATT-G-AT-AAGATTTGGACAACACATA---ATA-TT-GTCTTT-CACTTCTTT-T-----------T--ATTTCAGAAACCATA-TGATAT-GACACGATGGTAGGAAAATA-TAGCGAT-GC-T--A-TTA-TTGCAATT---TAGA-TTTATTGAATCTCTAAGGCATCAT----T---AGCCATTG--C-TCT--G-AATACCA-TG-TCCACCAG-C-TA-T-TAC-AA-TA-CAGA-TAATCAG-AGTACTTAA-GGTACTGATAGG----AGGGTACT-GT-A-----tctg
gi|4 : ttACCAGTCCAAATTTGATGAAAA--T-AACACAC--AGT-AACAATCAATGAAGT-AA-ACTTTTCA-TTAAAAA--CCTAA-T-TATCAA---TT-CAAAACACAA---TAGCA-A-TA---AGTGA-TGC-ACCTTG--A------TCTTTTTCTTTTTATTTTTCTTTTTGCCA------TAAAAT--TA-AT-T--ATATATCCA--AA--TT-ATGTA-------GTCGAAACCAAA-TCCC-CGAC-GTCG-TT---CAAAATTT--GCGAAGCTTACTTGAA---AGCGGGATTAA--G-----GATA-----GACAATA-A--ATGA-TCCACTCA-CCACGGAG-CAA-GATCCA--AAAACCACGGAGCCACTTA--TTCCAC--TTTA-----TCCA--AA-TCCGCGGCGC-TTTTTAAATGATGTAA---------GTCTTTTCTTTCA-CA-CTCAAAATACAC-AAT-G-TT---GAA----GACG----AA-TACTTTTGTTTCAAACAACTTATTTTAGAAA---GGGATACT-TTAGA-TCAACT---TACT------GTATATATCTAAAAG--TCTACAAT--AA-AACAAAC-CATATATGA-ATCAAT--GG-ATTTT-CTTGCTTTGGATACAAATAATA-T-G-ATAAAGATTT-AACGATACAT-----TCGT---TCTTT-CCCTT-TTT-T-----------T--ATTTCA-AAACCGTA-TGATATGGACACGAT-GT--GACAATA-T--CGAT--C-T--A-TTA-TTGTAATA---T-GATCTTA-TGACTCTT--AAGCGTT-T----T---A--CATT---C-TCT--G-AATACCTATG-CCCCCCAG-C-TA-TAT--AAA-TA-CA-CGCAATCAA-AGTACTTAA-GGTACTGATAGC----T-GATACT--T-A-----C--CCCCCCCCCC-CCCCCCCACAAATAAACCCatgaacaccccacatccattaaaaccctttacattgtaaaccaaagatattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : acacaacATTTTTAATT-CTAAACATCT-GTT-GCAGTCACAG-CGA-GCTCGATTTTAGTGCAAATTA-AAGGCGCATGCCTA-GGCTTCAT-AAATATCACG-AAACATCCGAAGCACAGATTG-CAC-AAAGACCACAATTATATGTAAAACAGGAAAAATTTAATTTTGTGGCCTTTTTGCCCCAT-GCCGAGGCAAAATACAGCCTAGCAA-GATGGGCA-AAGTG--CCACCATAGGC-TCTATG-CCCATGATAATGGGCGATTT-GCCCCTTTTT-TGTAAC--AACAAAAAGCAACTGAAACATGCA-TGGACACAGCCGGTAACACGGATCCAA-GTCGAAGGTTGGATCCAAT-GACCGCGGAGCAAAACCCAAGGAAACACCAGGGCGTTTTAAGCCAT-GATTAGCTGATTGACCATGCA-ATTAGATTTTAATTTTACAttc
gi|5 : ATACGTGTTTAGCAAGTTGGAA--TAATAACTCCATATATTTTTTAT-AAGAC-ATACTTTTTACAT-TTTTC--------ATAAT-------ATAAAAC--------AAAAAAATT--AACTCTCCCCCTCAAAAAAACCCCAAT-CAAACCATT--AAAATTGATGAAAGATT-AACG-AC--AGTAAACAAACAAT-----------TTTTCA-TT-AAAAACCGGAA-atgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccatacgtgtttagcaagttggaataataactccatatattttttataagacatactttttacatttttcataatataaaacaaaaaaattaactctccccctcaaaaaaaccccaatcaaaccattaaaattgatgaaagattaacgacagtaaacaaacaatttttcattaaaaaccggaaaacaagattaaggcttt
gi|6 : atttttaattctaaacatctgttgcagtcacagcgagctcgattttagtgcaaattaaaggcgcatgcctaggcttcataaatatcacgaaacatccgaagcacagattgcacaaagaccacaattatatgtaaaacaggaaaaatttaattttgtggcctttttgccccatgccgaggcaaaatacagcctagcaagatgggcaaagtgccaccataggctctatgcccatgataatgggcgatttgccccttttttgtaacaacaaaaagcaactgaaacatgcatggacacagccggtaacacggatccaagtcgaaggttggatccaatgaccgcggagcaaaacccaaggaaacaccagggcgttttaagccatgattagctgattgaccatgcaattagattttaattttacaatgaacatgtatatcggcacgagaagacaaatcctacagcttcttaaaacttgtgctcaattacatgtaccatataatagtttataaaaaatactgttcaaacccaaaccTGGGGCAAAAAG-CACCCCTT-----------AAGCGGAAATTTCA-TT--TGCACATCTAGTT-GCAGTCACAG-CGA-GCTCGATTTAGGTGCAGATTA-AAGGCGCATGCCTA-GGCTTCAT--AATATCACG--AACATTCGAAG-ACAGATTGACACGAAAGACCACA---ATATGTAAAACAGGAAAAATT--ATTTTGTGGCCTTTTTGCCCCATGACCGAGGCAAAAC---GCCTAGCAAGG-TGGGGCAAAGTG-CCCACCATAGGCGTCT-TGCCCCATGATAGTGGGCGATTT-GCCCCTTGTG--TAAACATAAC-AAAAGCAACTAAAA----CA-TGAACACACaacaagattaaggcttt
gi|7 : agggtagccGACTCAAATGAATACTAGT--AGTATATA---AAAA---TCTACAAGAAAA-AACGAAC-CA-ATATGA-ATCACT--GGTATTTT----------GATA-AACTAA----------AAGATTTGGAC-ATACACAT--GTAGTT-GTCTTT-agag
gi|8 : TATTTTATTTGC-TTGGATA-AAATAA-A-TCG-AT-AAGATTTGGAC-ATACACACATGTAGCT-GTCTTT-CACTT-TTTGTTTAAAAATATAT--ATTTCAGAAACCATA-TGATAT-G
gi|9 : CATTTA-TGAACACACCGGGT-ATACGAATCCAACGTCCGAGGTTGGATCCAATGAA-CGCGGAGCAAAACCCAA-GGAACA-T----CGTTTTAAG-CAT-GATTAGCTGATTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AGTCTTGAAGGCAACTTTTATGGTTTCGTTTTTCTTTTGATCATACATTCCGTGAACTGTTAATCAATAGAGAGAA