lowQualScore : 1111111111111111111111
lowQualScore : 22222222 3333333333 1111 1 2222 11111 7777777777777777777777 222222 333333 1111 111111 11 11 11111 11
lowQualScore : 0 77777777 999 2 2 6 6 3 0 0 77777 9 44 8888888888 3 3333 3 3 3 666 7 3 88 3 999 4 55 55 8 4 4 777 4 1111 1 22222 5 77 1111111111111111111111 7 7777 000000 55 222222 55 4 55 3 3 55 55 8888 3 0 999 1 4 55 55 2222 777777 3 4 66 4 4 22 99 4 88 9999 11111 4 66 4 4 00 5 8 0 5
lowQualScore : . ........ ... . . . . . . . ..... . .. .......... . .... . . . ... . . .. . ... . .. .. . . . ... . .... . ..... . .. ...................... . .... ...... .. ...... .. . .. . . .. .. .... . . ... . . .. .. .... ...... . . .. . . .. .. . .. .... ..... . .. . . .. . . . .
lowQualScore : 5 44444444 333 9 9 2 2 1 5 2 77777 2 22 1111111111 1 1111 1 3 6 444 3 6 44 6 444 0 55 55 0 1 0 000 0 5555 6 99999 0 99 5555555555555555555555 3 7777 999999 00 555555 55 0 55 6 6 00 00 5555 4 8 444 8 0 55 55 8888 444444 7 4 11 4 4 22 66 4 44 4444 11111 4 11 0 0 66 7 4 1 7
consensus : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AAATAT-A-ATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT-A----T-ATAT-C-A---T-A-TA-TT-TTTATA-A-CTATA-T--GTGAA--AGTTAT-ATAAA-TAG---AA-AAG-G-AAGAGGGAGGGG--GAGGGTGTCAGCAA--AGAAA--A---AA----------TTCAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTA--ATTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT--C-ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
Reference ( gi|4 ) : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AAATAT-A-ATACGAT---GACATCAACAAT-AATT--TCTCTT----------AT-A----T-ATAT-C-A---T-A-TA-CT-TTTATA-A-CTATA-T--GTGAA--AGTTAT-ATCAA-TAG---AA-AA--G-AAGAGGGAGGGG--GAGGGTGTCAGCAA--AG-----A---CATTTTTTT---TTCAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTT--CTTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT--T-ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-GACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAGTTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|21 : GGTTTAATCTTGTTTATTTCTCTCACATA----CGTATACATGCA---TG-CACATT-AT-AAATAT-A-ATGCGAT---GACATCAACAAT-ATTT--CCTCTT----------AT-A----T-ATAT-C-A---T-A-TA-TT-TTTA
gi|30 : tttGGTTTAATCTTGTTTATTTCTTTCACATATA------TACATGCA---TG-CACATT-AT-AAATAT-A-ATA
gi|9 : tGTTTAATCTT-TGTATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAAATATTA-ATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT-AATACT-ATAT-C-A---TTA-TA-TT-GGTATA-AACTATA-T--GTGAA--AGTTATTATAGA-TAG---AA-CG--G-AAGAGG----GG--GAGGGTGTCAGCAA--AGAAA--A---AA------T---TTCAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAA
gi|15 : tttttGTTTAATCTTGTTTATT-CTTTCACATATATACATG------CA---TG-CACATT-AT-AAATAT-A-A--CGAT---GACATCAACAAT-AATT--TTTCTT----------AT-A----TAATAT-C-A---T-A-TATTT-TTTATA----TATA-TTAGTGTA--AGTTAT-ATTGA-TAG---AA-AAG-G-AAGAGGGAAGGG--g
gi|22 : ttGTTTAATCTTGTT-ATTTCTTTCACATGTATACA------TGCA---TG-CACATT-AT-GAATAT-A-ATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT-A----T-tgt
gi|20 : ttttGTTTAAT-TTGTTTATTTCTTTCACATATATACATGTA---------TG-CACATT-AC-AAATAT-A-ATACAAT---GACATCAACAAT-AATTTGTATATT----------AT-A----T-ATAT-
gi|16 : tttttttGTTTAATCTCGTT-ATTTCTTTCAC-TATATA----TACATGCA---TA-TACG---AG-AAATAT-A----------------CCATAGT-ATTT--TCTC------------AT-A----T-ATAT-C-AATAC-A-TA-TT-TTTATA-A-CTATA-T--CTTGATTAGTTAT-CTAAACTAG---AG-AA-------AGGGAgagattgtgtat
gi|32 : tttttGTTTAATCTTGTTTATTTCTTTCACATATATACATG--CATGCA---
gi|8 : ttttttTTTAATCTTGTTTATTTCTTTCACATATATACA------TGCA---TG-CATATT-AT-AAATAT-A-ATGCGAT---TACATCAACAAT-AATT--TCTTTT----------AT-C----T-ATAT-C-A---T-A-TA-TT-TTTATA-A-CTATA-T--GTGAA--AGATAT-AAAAA-TAG---AA-AAG-G-AAGAGGGAGGGC--AAAGG-GTCAGCAA--AGAAAAAA---AA-----------TCAAATGTTC----TGT----AA------GTAGT--ATGTGACCATA--ATTGAAAGCAAA--TA-C--AACATA-C--A-AA--A
gi|6 : AATCTTGTTTATTTTTTTT-----TTTACATATATACG-----TG-CACATT-AT-ACATTT-A-ATACAAT---TACATCAACAAT-CATT--TCTTTTGTGATATGAAAT-A----T-ATAT-C-A---T-A-TA-CT-TTTATA-A-CTAAG-T--GTAAA--AGTTAT-ATAAA-TAG---AA-AAG-G-AAGAGGGAGG------GGGTATCAGCAA--AGAAAA-A---AA-----------TCAAATGTTCTA-TTGC----AA------GTAGT--ATGTAAACATA--CTTGAAAACAAA--TA-C--AGC-TATC--ATAA--AGTATAATTATATTGTATAAGTATT-GCTATCT-ACGAGT--GCAT--C-ACATATGT
gi|7 : AATCT-GTTAATT-CTTCGACAT-TATA---GTACATGCA---CATCATATTTAT-AAATAC-A-ATAT-------ACATCAACAATTCGTT--TCTCTTGTGATAGG--AT-A----T-ATATAC-A---T-A--A-CT-TTTATA-A-CTATATT--ATGAA--AGTTAT-AT--A-T-G---AA-AAGTG-AAGAGGGAGGGGTCGA---TGCAAGGAA--AA-----A----------------TCCAATGTTTTC-TTGTTATGAA------GTAGTTGATGCATAC-TTAATTTAAAAACAAGTTTACC--AAC-AT-T--ATAA--AGTA----TAT
gi|35 : ttttaaTTGTGTATTTCTTTCACATATA------TACATGCA---TG-GACATT-A
gi|14 : TGTTTATTTCTTTCACATATATA----------CA---TG-CATATT-AT-AAATTT-C-ATACAATTTACACATCAACAAT-CATT--TCTCTT----------ATGA----T-ATGG-CAA---T-A-TA-CGATGTATGTA-TTATA-T---TGAC--AG-CAC-GCCAA-TAAGCTAATAA--G-AAAAGAGAGAG
gi|10 : gtttttttacatactaATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAAATATTA-ATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT-AATACT-ATAT-C-A---TTA-TA-TT-GGTATA-AACTATA-T--GTGAA--AGTTATTATAGA-TAG---AA-CG--G-AAGAGG----GG--GAGGGTGTCAGCAA--AGAAA--A---AA------T---TTCAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAA
gi|3 : ACATATATG-ACATGCA---TG-CACATT-AT-AA-TAT-ATATA-GAT---G-CAT-AACAAT-A-TG--TCTCTT----------AT-A----T-ATAT---A---T-AATA-TT-TTTATA-A--TATA-T--GTGAA---GTTAT-ATAAA-TAG---AG-AA-----AGAGGGAGGGG--G----TGTCAGCAAGAAA-----A---CAATTT--------CAAATGTTCTA-TTGT----AA------GTAGT--A-GTAA-CGTA--ATTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----T-TAGTGTATGAATATA-GCTATAT-A--AAT--GCAT--T-ACATATG-TT-T----G-CAA-TGCCT--TT-CA-TAT--TCTATAAA--C-TAC-ACTTT----GT-AC-----AGC-AGGAA--C--TT-TCTATAAAAATTCTATCTATGA-TC-CCTTTCTAAGGAT-GTCAg
gi|1 : TTAACAAT-CATT--TCTCTTGTGATATGAAAT-A----T-ATAT-C-A---T-A-TA--T-TTCATA-G-CTATA-T--GGGAA--ATTTAT-ATAAA-TAG---AA-AA--GGAAGAGAAAAGGG--GGTGG-GTCAGCAA--AG-----AAAACA-------AAATTCAAATGTCCTA-TTAT----AA------GTAGT--ATGTAAACATG--ATTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----T-------------ATA-GC-GTAT-A--AAT--G------------TGTTT-T----ACCAA-TGCCT--TT-TA-CAT--TCTATATA-TC-TACAACTTT----GTAAC-----AAC-A-GAA--CATGT-TCTATAAAAATTCTTTCTATGA-TCATCTTTATAAGGAT-GTCAcatgcaatttggaacattttaatatttatcgcaaatacttgttttaacaagtatcaatagattttgtatttataaatattattatttcataattaaccaaataagtatccttgtctatcaaagctacaatgaatattgaacttactctaaaatcaatttcaattc
gi|23 : ---TTCAAATTTTCTA-TTTT----AA------GTAGC--ATGTAACC------------ATAAA--TG----------------AA--AAT-----CATAGTGTGTAAATATT-ACGATCT-A--AGT--GCAT--C-ACacatacaatttaggaacaccttgcaaaaataagatgttttacaagtatcaatgtattttttaattcataaatattgttattttcatatttgccaaataatattccttgtttatcaaagttacaatggatattgaacttctctaaaactcattcctcaattatataccaaagttattgtacttggaaactttcaacaaataaatgatcaattgtttctgtgctattttacaaacaaagtacatgaaggggagtctattaactttaaccgaaataaatagcagtttgtagggacaattctatgcaaaatttggaattgaagcgcgtgaagtttagattcctggtttattataaatggaagcccaaatattttgttccatactgcatcacttaataaaatattgttttatttcaatttaccagtgttatgaatttgatttacttgacttttgtcctttcttatgatgattttaataatttaaatatgttaatatcctttcgttacacattgaatacc
gi|11 : aaagaaataaTCAAACATTCTA-TTGT----AA------GTAGT--ATGGAAACATA--ATTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAATGTATAAATATA-CCTATAT-A--AGT--ACAT--C-ATATATGTTT-T----GTCAA-TGCCT--TT-CA-TAT----GAT--A-TC-TACAACTTT----GTAAC-----AAC-AGAAA--C-TTT-TCTTTAAAAAAAATATTTATGA-TCCCCTTTATAAGAAT-GTCA
gi|13 : aaaaataCAAATCGTCTA-TTGT----AA------GTAGT--ATGTAAACGTA--AATGAAAACAAA--TA-C--AAC-TA-C--ATAA---GTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT--T-ACATATGTTT------GCCAA-TGCCT--TT-CA-TAT--TCTAATAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TC-ATAAAAATTCTATCTc
gi|12 : aCAAATGTTCTA-T-GT----AA------GTAGT--ATGGAAACATA--ATTGAAAACAAA--TA-CCAAAC-TA-C--ATAA--AGTA----TATAATGTATAAATAT---CTATATAA--AGTACACAT--C-AATTATGTTTGTA---GTCAA-TGCCT--TTCCA-TATGATC-----A-TC-TACACTCTT----GTAAC-----AAC-AGAAA--C-TTTCTTTAAAAAAA---TATTTATGA-TC-CCTTTCTA---GT-GTCA
gi|17 : AACGTA--ATTGAAAACAAA--TA-C--AAC-TA-C--ATATTTAGTA----TATAGTGTATAA---------ATAT-A-------GC---------TAT--------------A-TACCT--TT-CG-TAT--TCTATAAA-TC-TACAACTTTAATTGTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATc
gi|2 : AC-TA-CCGATAA--AGTA----ATTAGTGTATAAATATATGTTATAC-A--GTT--GCATGCTGACATATGCCT-TCTTGGTCAACTGCCTTGTT-CATTATTCTCTATAAAGTCTTACAACTT------TAACCCACAGGCGAGGGAATC-TTT-TCTATAAA--TTCTATCTATGATTCACCTTTATAGTGATGGTCA
gi|19 : AC-A--AGT--GCAT--C-TCATATGTTT-T----GCCAT-TGTCT--TT-CA-TAT--TCTATATA-TC-AACAACTTT----GCAAC-----ACC-AAAAA--C-TTT-GGTATAAAAAATATATCTATGA-TCACTTTTATAAGGAT-GTccatgcagcttaggacatttttatatttactagcaaataaatttgtttttaacacaagtatcaatagattttttggtgttaatttatatgaatattcttattttcatatttgccaaatagtatcacttgtttatcaaagctaaacaacatgaatatcgaacttttctaaaaatcccattctttatttctttcaatttttaatacaaaacagcaaaaaaagaaaaaaaggaaaacacctaaggagttcttttacgcttggaaaacggcattcaacataatgatcaaaattgtttctcatggtgttggggtcattttttacagaaaagagtaaaaggaagaggagaatcattaactttataaacaccaaaaaaaaaaataaaagtaaaaaaaccgcaataaaatagttagtgttgtaaggttctaattctaaatcaaaatttgattgaagccaattgaaggtttagattttcgtgtggtggtttttttccttattgtttcacttccctgttggttattttttgaagggaagctcataatattttgttccatactgtcatctcaatttcttactgaataaaatattgtttctttt
gi|28 : TTT-T----GCTAA-TGCCT--TT-CA-TAT--TCTATA--------------T----ATGAC-----AAC-AGAAA--C-TTT-TCTATAAAAATTCTA
gi|18 : -TTT-TCTATAAAAAATCTATCTATGA-TCACTTTTATAAGGAT-GTCA
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CAATTCTACTATGGGCAAAATTTGGAATTGAAGCCATGAAGTTAAATTCTGAGATATTTTGAAGGGAAGCTCAAATTTATTTTGTTCCATACTGCTACTGAAAAGAAATATTGTTTTCTTTCATTAGAAATACAAGTAGAACCTTTTTTCATTAATAATATAATTTACATATTTTACATCCTGTCTTGTTTCATAAAATACAGAAATGATTGAGGATTGGTCCTTCATTTTAGTATGTTAATTTCATTAATATCTGTATTTTTTAAAATTTTAACTGGCTCTCTTACGGCACTGCATCAACATAATTTG
Unaligned ( gi|24 ): CTTTAACCGAAATAAATAGTAGTTTGTAGGTCTAATTCTATGCAAAATTTTGAATTGAAGCCATTGAAGTTTAGATTCCTG
Unaligned ( gi|25 ): ATAGACCTTTATAATGAGTTAAACCATTACAAATTGTTCGATATTCTCTCGTTATACATTGAATAC
Unaligned ( gi|26 ): TCTATGTTAACTTTAATCATTCAACAGTGTTCATTATCGTTTCGTTATACATCGAATACCTT
Unaligned ( gi|27 ): AATTATGTTGATTTAAATGATTCAAAAATGTTCATAATCCTTTAGTTGTACATTGAATACC
Unaligned ( gi|29 ): GCATTATAAATTACATCTACCATAATTTCTCTTGTAATAGGAAATATATATCATACTTTT
Unaligned ( gi|31 ): AATGGAAAATAGTATTCAGTATCACTACTGTATATGAATAAATTCTTGACTACC
Unaligned ( gi|33 ): CATTTATCAGTCATGTAAATTTTATGTACTTCACTTTCATATTTA
Unaligned ( gi|34 ): AAAAAAAATCAAAGCCTCTTTGTTGTATGTTGTAAACTTAA
Unaligned ( gi|36 ): AATAAAATATGTTCAAATCACGTGAATTTGATTTACTT
Unaligned ( gi|37 ): AGAATGGCGAAGTAACAATGTATTAAACGTTATTAAA
Unaligned ( gi|38 ): AAATGGCGAAGTAACAATGTATTAAACGTTATTAA
Unaligned ( gi|39 ): GGTCGGTCGGTTGACAGTAAATTAGATGGAAATG
Unaligned ( gi|40 ): AAAATGGTTAATAATGAGCGGCAGTTTATTAACT
Alignments
lowQualScore : 22222222 3333333333 11111111111111 11111 11111 2222222222222222 111111 111111 11 11111
lowQualScore : 11111111 888 2 2 5 2 5 3 77777 8 33 5555555555 66666666666666 2 3 555 6 3 3 3 00000 88 55 55 7 4 3 3 2 3 2 77777 66 4 0000000000000000 3 6 7777 999999 44 1 3 55 3 55 3 3 44 44 7777 77 3 55 55 7777 444444 2 4 55 4 4 11 66 4 4 8888 00000 4 55 3 3 2 5 6 5
lowQualScore : ........ ... . . . . . . ..... . .. .......... .............. . . ... . . . . ..... .. .. .. . . . . . . . ..... .. . ................ . . .... ...... .. . . .. . .. . . .. .. .... .. . .. .. .... ...... . . .. . . .. .. . . .... ..... . .. . . . . . .
lowQualScore : 00000000 888 7 7 7 9 7 8 55555 6 99 4444444444 33333333333333 9 1 888 7 3 3 3 55555 66 00 00 3 0 6 6 1 6 9 66666 99 4 7777777777777777 3 7 1111 222222 66 0 6 00 6 00 3 3 66 66 7777 55 6 00 00 5555 888888 3 0 55 0 0 00 88 0 0 5555 00000 0 55 6 6 5 0 2 0
consensus : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAG-AAA-------A---AA-T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
Reference ( family-779 ) : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAG-AAA-------A---AA-T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|1 : TTAACAAT-CATT--TCTCTTGTGATATGAAAT---------A----T-ATAT-CA---T-A-TA-TTT-C-ATA---G-CTATAT--GGGA--A--ATTTAT-ATAAA-TAGA-AAAG-GAAGAGAAAAGGGGGTGG-GTCA--GCAAAG-AAA-------ACAAAA-T-T-CAAATGTCCTA-TTAT----AA------GTAGT--ATGTAAACATGA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGCGTATAA--------------------------------ATGTGTTT-T----ACCAA-TGCCT--TT-TA-CAT--TCTATATA-TC-TACAACTTT----GTAAC-----AAC-A-GAA--CATGT-TCTATAAAAATTCTTTCTATGA-TCATCTTTATAAGGAT-GTCA
gi|10 : ATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAA-ATATTAATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT---------AATACT-ATAT-CA---TTA-TA-TTG-GTATA---AACTATAT--GTGA--A--AGTTATTATAGA-TAGA-AC-G-GAAGAGG----GGGAGGGTGTCA--GCAAAG-AAA-------A---AATT-T-CAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAAacatacaatttaggaacaccttgcaaaaataagatgttttacaagtatcaatgtattttttaattcataaatattgttattttcatatttgccaaataatattccttgtttatcaaagttacaatggatattgaacttctctaaaactcattcctcaattatataccaaagttattgtacttggaaactttcaacaaataaatgatcaattgtttctgtgctattttacaaacaaagtacatgaaggggagtctattaactttaaccgaaataaatagcagtttgtagggacaattctatgcaaaatttggaattgaagcgcgtgaagtttagattcctggtttattataaatggaagcccaaatattttgttccatactgcatcacttaataaaatattgttttatttcaatttaccagtgttatgaatttgatttacttgacttttgtcctttcttatgatgattttaataatttaaatatgttaatatcctttcgttacacattgaatacc
gi|11 : AA-------A---AA-TAT-CAAACATTCTA-TTGT----AA------GTAGT--ATGGAAACATAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAATGTATAAATATA-CCTATAT-A--AGT--ACAT-C--ATATATGTTT-T----GTCAA-TGCCT--TT-CA-TAT----GAT--A-TC-TACAACTTT----GTAAC-----AAC-AGAAA--C-TTT-TCTTTAAAAAAAATATTTATGA-TCCCCTTTATAAGAAT-GTCAg
gi|12 : -CAAATGTTCTA-T-GT----AA------GTAGT--ATGGAAACATAA-TTGAAAACAAA--TA-CCAAAC-TA-C--ATAA--AGTA----TATAATGTATAAATAT---CTATATAA--AGTACACAT-C--AATTATGTTTGTA---GTCAA-TGCCT--TTCCA-TATGATC-----A-TC-TACACTCTT----GTAAC-----AAC-AGAAA--C-TTTCTTTAAAAAAA---TATTTATGA-TC-CCTTTCTA---GT-GTCAc
gi|13 : -CAAATCGTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-ATGAAAACAAA--TA-C--AAC-TA-C--ATAA---GTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-T--ACATATGTTT------GCCAA-TGCCT--TT-CA-TAT--TCTAATAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TC-ATAAAAATTCTATCTc
gi|14 : aTGTTTATTTCTTTCACATATATA----------CA---TG-CATATT-AT-AA-ATTT-CATACAATTTACACATCAACAAT-CATT--TCTCTT----------ATGATATGGCAA----T-ATAC-GA---T-G-TA-TGTATTATATTGA-CAGCAC--GCCAATA--AGCTA--ATA----AGA-AAAG-AGAGAG
gi|15 : gtttttttacatactaGTTTAATCTTGTTTATT-CTTTCACATATATACATG------CA---TG-CACATT-AT-AA-ATAT-AA--CGAT---GACATCAACAAT-AATT--TTTCTT----------AT---------A----TAATAT-CA---T-A-TATTTT-TTATA------TATATTAGTGT--A--AGTTAT-ATTGA-TAGA-AAAG-GAAGAGGGAAGGG
gi|16 : ttGTTTAATCTCGTT-ATTTCTTTCAC-TATATA----TACATGCA---TA-TACG---AG-AA-ATAT-A---------------CCATAGT-ATTT--TCTC------------AT---------A----T-ATAT-CAATAC-A-TA-TTT-TTATA---A-CTATAT--CTTG--ATTAGTTAT-CTAAACTAGAGAAAG-GGAtgt
gi|17 : tttttAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATATTTAGTA----TATAGTGTATAAATATA-GCTATAT-A---------------------------------------CCT--TT-CG-TAT--TCTATAAA-TC-TACAACTTTAATTGTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAAT
gi|18 : -TTT-TCTATAAAAAATCTATCTATGA-TCACTTTTATAAGGAT-GTCA
gi|19 : AC-A--AGT--GCAT-C--TCATATGTTT-T----GCCAT-TGTCT--TT-CA-TAT--TCTATATA-TC-AACAACTTT----GCAAC-----ACC-AAAAA--C-TTT-GGTATAAAAAATATATCTATGA-TCACTTTTATAAGGAT-GTacatgcaatttaggaacatttttataactatctcaaaaataaattattttacaacaagtatcaatagattttg
gi|2 : AC-TA-CCGATAA--AGTA----ATTAGTGTATAAATATATGTTATAC-A--GTT--GCATGCTGACATATGCCT-TCTTGGTCAACTGCCTTGTT-CATTATTCTCTATAAAGTCTTACAACTT------TAACCCACAGGCGAGGGAATC-TTT-TCTAT--AAATTCTATCTATGATTCACCTTTATAGTGATGGTCA
gi|20 : GTTTAAT-TTGTTTATTTCTTTCACATATATACATGTA---------TG-CACATT-AC-AA-ATAT-AATACAAT---GACATCAACAAT-AATTTGTATATT----------AT---------A----T-ATAT-ccatgcagcttaggacatttttatatttactagcaaataaatttgtttttaacacaagtatcaatagattttttggtgttaatttatatgaatattcttattttcatatttgccaaatagtatcacttgtttatcaaagctaaacaacatgaatatcgaacttttctaaaaatcccattctttatttctttcaatttttaatacaaaacagcaaaaaaagaaaaaaaggaaaacacctaaggagttcttttacgcttggaaaacggcattcaacataatgatcaaaattgtttctcatggtgttggggtcattttttacagaaaagagtaaaaggaagaggagaatcattaactttataaacaccaaaaaaaaaaataaaagtaaaaaaaccgcaataaaatagttagtgttgtaaggttctaattctaaatcaaaatttgattgaagccaattgaaggtttagattttcgtgtggtggtttttttccttattgtttcacttccctgttggttattttttgaagggaagctcataatattttgttccatactgtcatctcaatttcttactgaataaaatattgtttctttt
gi|21 : tttttttGGTTTAATCTTGTTTATTTCTCTCACATA----CGTATACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-ATTT--CCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTAgagattgtgtat
gi|22 : tttGTTTAATCTTGTT-ATTTCTTTCACATGTATACA------TGCA---TG-CACATT-AT-GA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-
gi|23 : ttttAAAG-AAA-------T---AA-T-T-CAAATTTTCTA-TTTT----AA------GTAGC--ATGTAACCATAA-ATGAAAAT-----------------------------------CATAGTGTGTAAATATT-ACGATCT-A--AGT--GCAT-C--AC
gi|28 : TTT-T----GCTAA-TGCCT--TT-CA-TAT--TCTATA--------------T----ATGAC-----AAC-AGAAA--C-TTT-TCTATAAAAATTCTA
gi|3 : ACATATATG-ACATGCA---TG-CACATT-AT-AATATAT-A-TA-GAT---G-CAT-AACAAT-A-TG--TCTCTT----------AT---------A----T-ATAT--A---T-AATA-TTT-TTATA---A--TATAT--GTGA--A---GTTAT-ATAAA-TAGA----G-AAAGAGGGAGGGGG----TGTCA--GCAAGA-AAA-------C---AA-T-TTCAAATGTTCTA-TTGT----AA------GTAGT--A-GTAA-CGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----T-TAGTGTATGAATATA-GCTATAT-A--AAT--GCAT-T--ACATATG-TT-T----G-CAA-TGCCT--TT-CA-TAT--TCTATAAA--C-TAC-ACTTT----GT-AC-----AGC-AGGAA--C--TT-TCTATAAAAATTCTATCTATGA-TC-CCTTTCTAAGGAT-GTCA
gi|30 : GGTTTAATCTTGTTTATTTCTTTCACATATA------TACATGCA---TG-CACATT-AT-AA-ATAT-AATcatgcaatttggaacattttaatatttatcgcaaatacttgttttaacaagtatcaatagattttgtatttataaatattattatttcataattaaccaaataagtatccttgtctatcaaagctacaatgaatattgaacttactctaaaatcaatttcaattc
gi|32 : tGTTTAATCTTGTTTATTTCTTTCACATATATACATG--CATGCA---a
gi|35 : ttttttTTGTGTATTTCTTTCACATATA------TACATGCA---TG-GACATT-A
gi|4 : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATACGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-CTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATCAA-TAGA-AAAG--AAGAGGGAGGGGGAGGGTGTCA--GCAAAG-ACATTTTTTT-------T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTTC-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-T--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-GACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAGTTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|6 : AATCTTGTTTATTTTTTTT-----TTTACATATATACG-----TG-CACATT-AT-AC-ATTT-AATACAAT---TACATCAACAAT-CATT--TCTTTTGTGATATGAAAT---------A----T-ATAT-CA---T-A-TA-CTT-TTATA---A-CTAAGT--GTAA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGG----TATCA--GCAAAG-AAA-------A---AA-A-T-CAAATGTTCTA-TTGC----AA------GTAGT--ATGTAAACATAC-TTGAAAACAAA--TA-C--AGC-TATC--ATAA--AGTATAATTATATTGTATAAGTATT-GCTATCT-ACGAGT--GCAT-C--ACATATGT
gi|7 : AATCT-GTTAATT-CTTCGACAT-TATA---GTACATGCA---CATCATATTTAT-AA-ATAC-AAT---AT----ACATCAACAATTCGTT--TCTCTTGTGATAGG--AT---------A----T-ATATACA---T-A--A-CTT-TTATA---A-CTATATT-ATGA--A--AGTTAT-ATA---T-GA-AAAGTGAAGAGGGAGGG-------GTCGATGCAAGG-AAA-------A---A----T-CCAATGTTTTC-TTGTTATGAA------GTAGTTGATGCATACTTAATTTAAAAACAAGTTTACC--AAC-AT-T--ATAA--AGTA----TAT
gi|8 : ttttaaTTTAATCTTGTTTATTTCTTTCACATATATACA------TGCA---TG-CATATT-AT-AA-ATAT-AATGCGAT---TACATCAACAAT-AATT--TCTTTT----------AT---------C----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGATAT-AAAAA-TAGA-AAAG-GAAGAGGGAGGGCAAAGG-GTCA--GCAAAGAAAA-------A---AA-A-T-CAAATGTTC----TGT----AA------GTAGT--ATGTGACCATAA-TTGAAAGCAAA--TA-C--AACATA-C--A-AA--A
gi|9 : GTTTAATCTT-TGTATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAA-ATATTAATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT---------AATACT-ATAT-CA---TTA-TA-TTG-GTATA---AACTATAT--GTGA--A--AGTTATTATAGA-TAGA-AC-G-GAAGAGG----GGGAGGGTGTCA--GCAAAG-AAA-------A---AATT-T-CAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAA
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAATTCTACTATGGGCAAAATTTGGAATTGAAGCCATGAAGTTAAATTCTGAGATATTTTGAAGGGAAGCTCAAATTTATTTTGTTCCATACTGCTACTGAAAAGAAATATTGTTTTCTTTCATTAGAAATACAAGTAGAACCTTTTTTCATTAATAATATAATTTACATATTTTACATCCTGTCTTGTTTCATAAAATACAGAAATGATTGAGGATTGGTCCTTCATTTTAGTATGTTAATTTCATTAATATCTGTATTTTTTAAAATTTTAACTGGCTCTCTTACGGCACTGCATCAACATAATTTG
Unaligned ( gi|24 ): CTTTAACCGAAATAAATAGTAGTTTGTAGGTCTAATTCTATGCAAAATTTTGAATTGAAGCCATTGAAGTTTAGATTCCTG
Unaligned ( gi|25 ): ATAGACCTTTATAATGAGTTAAACCATTACAAATTGTTCGATATTCTCTCGTTATACATTGAATAC
Unaligned ( gi|26 ): TCTATGTTAACTTTAATCATTCAACAGTGTTCATTATCGTTTCGTTATACATCGAATACCTT
Unaligned ( gi|27 ): AATTATGTTGATTTAAATGATTCAAAAATGTTCATAATCCTTTAGTTGTACATTGAATACC
Unaligned ( gi|29 ): GCATTATAAATTACATCTACCATAATTTCTCTTGTAATAGGAAATATATATCATACTTTT
Unaligned ( gi|31 ): AATGGAAAATAGTATTCAGTATCACTACTGTATATGAATAAATTCTTGACTACC
Unaligned ( gi|33 ): CATTTATCAGTCATGTAAATTTTATGTACTTCACTTTCATATTTA
Unaligned ( gi|34 ): AAAAAAAATCAAAGCCTCTTTGTTGTATGTTGTAAACTTAA
Unaligned ( gi|36 ): AATAAAATATGTTCAAATCACGTGAATTTGATTTACTT
Unaligned ( gi|37 ): AGAATGGCGAAGTAACAATGTATTAAACGTTATTAAA
Unaligned ( gi|38 ): AAATGGCGAAGTAACAATGTATTAAACGTTATTAA
Unaligned ( gi|39 ): GGTCGGTCGGTTGACAGTAAATTAGATGGAAATG
Unaligned ( gi|40 ): AAAATGGTTAATAATGAGCGGCAGTTTATTAACT
Alignments
lowQualScore : 22222222 3333333333 11111111111111 11111 11111 2222222222222222 111111 111111 11 11111
lowQualScore : 11111111 888 2 2 5 2 5 3 77777 8 33 5555555555 66666666666666 2 3 555 6 3 3 3 00000 88 55 55 7 4 3 3 2 3 2 77777 66 4 0000000000000000 3 6 7777 999999 44 1 3 55 3 55 3 3 44 44 7777 77 3 55 55 7777 444444 2 4 55 4 4 11 66 4 4 8888 00000 4 55 3 3 2 5 6 5
lowQualScore : ........ ... . . . . . . ..... . .. .......... .............. . . ... . . . . ..... .. .. .. . . . . . . . ..... .. . ................ . . .... ...... .. . . .. . .. . . .. .. .... .. . .. .. .... ...... . . .. . . .. .. . . .... ..... . .. . . . . . .
lowQualScore : 00000000 888 7 7 7 9 7 8 55555 6 99 4444444444 33333333333333 9 1 888 7 3 3 3 55555 66 00 00 3 0 6 6 1 6 9 66666 99 4 7777777777777777 3 7 1111 222222 66 0 6 00 6 00 3 3 66 66 7777 55 6 00 00 5555 888888 3 0 55 0 0 00 88 0 0 5555 00000 0 55 6 6 5 0 2 0
consensus : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAG-AAA-------A---AA-T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
Reference ( family-779 ) : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAG-AAA-------A---AA-T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|1 : TTAACAAT-CATT--TCTCTTGTGATATGAAAT---------A----T-ATAT-CA---T-A-TA-TTT-C-ATA---G-CTATAT--GGGA--A--ATTTAT-ATAAA-TAGA-AAAG-GAAGAGAAAAGGGGGTGG-GTCA--GCAAAG-AAA-------ACAAAA-T-T-CAAATGTCCTA-TTAT----AA------GTAGT--ATGTAAACATGA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGCGTATAA--------------------------------ATGTGTTT-T----ACCAA-TGCCT--TT-TA-CAT--TCTATATA-TC-TACAACTTT----GTAAC-----AAC-A-GAA--CATGT-TCTATAAAAATTCTTTCTATGA-TCATCTTTATAAGGAT-GTCA
gi|10 : ATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAA-ATATTAATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT---------AATACT-ATAT-CA---TTA-TA-TTG-GTATA---AACTATAT--GTGA--A--AGTTATTATAGA-TAGA-AC-G-GAAGAGG----GGGAGGGTGTCA--GCAAAG-AAA-------A---AATT-T-CAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAAacatacaatttaggaacaccttgcaaaaataagatgttttacaagtatcaatgtattttttaattcataaatattgttattttcatatttgccaaataatattccttgtttatcaaagttacaatggatattgaacttctctaaaactcattcctcaattatataccaaagttattgtacttggaaactttcaacaaataaatgatcaattgtttctgtgctattttacaaacaaagtacatgaaggggagtctattaactttaaccgaaataaatagcagtttgtagggacaattctatgcaaaatttggaattgaagcgcgtgaagtttagattcctggtttattataaatggaagcccaaatattttgttccatactgcatcacttaataaaatattgttttatttcaatttaccagtgttatgaatttgatttacttgacttttgtcctttcttatgatgattttaataatttaaatatgttaatatcctttcgttacacattgaatacc
gi|11 : AA-------A---AA-TAT-CAAACATTCTA-TTGT----AA------GTAGT--ATGGAAACATAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAATGTATAAATATA-CCTATAT-A--AGT--ACAT-C--ATATATGTTT-T----GTCAA-TGCCT--TT-CA-TAT----GAT--A-TC-TACAACTTT----GTAAC-----AAC-AGAAA--C-TTT-TCTTTAAAAAAAATATTTATGA-TCCCCTTTATAAGAAT-GTCAg
gi|12 : -CAAATGTTCTA-T-GT----AA------GTAGT--ATGGAAACATAA-TTGAAAACAAA--TA-CCAAAC-TA-C--ATAA--AGTA----TATAATGTATAAATAT---CTATATAA--AGTACACAT-C--AATTATGTTTGTA---GTCAA-TGCCT--TTCCA-TATGATC-----A-TC-TACACTCTT----GTAAC-----AAC-AGAAA--C-TTTCTTTAAAAAAA---TATTTATGA-TC-CCTTTCTA---GT-GTCAc
gi|13 : -CAAATCGTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-ATGAAAACAAA--TA-C--AAC-TA-C--ATAA---GTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-T--ACATATGTTT------GCCAA-TGCCT--TT-CA-TAT--TCTAATAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TC-ATAAAAATTCTATCTc
gi|14 : aTGTTTATTTCTTTCACATATATA----------CA---TG-CATATT-AT-AA-ATTT-CATACAATTTACACATCAACAAT-CATT--TCTCTT----------ATGATATGGCAA----T-ATAC-GA---T-G-TA-TGTATTATATTGA-CAGCAC--GCCAATA--AGCTA--ATA----AGA-AAAG-AGAGAG
gi|15 : gtttttttacatactaGTTTAATCTTGTTTATT-CTTTCACATATATACATG------CA---TG-CACATT-AT-AA-ATAT-AA--CGAT---GACATCAACAAT-AATT--TTTCTT----------AT---------A----TAATAT-CA---T-A-TATTTT-TTATA------TATATTAGTGT--A--AGTTAT-ATTGA-TAGA-AAAG-GAAGAGGGAAGGG
gi|16 : ttGTTTAATCTCGTT-ATTTCTTTCAC-TATATA----TACATGCA---TA-TACG---AG-AA-ATAT-A---------------CCATAGT-ATTT--TCTC------------AT---------A----T-ATAT-CAATAC-A-TA-TTT-TTATA---A-CTATAT--CTTG--ATTAGTTAT-CTAAACTAGAGAAAG-GGAtgt
gi|17 : tttttAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATATTTAGTA----TATAGTGTATAAATATA-GCTATAT-A---------------------------------------CCT--TT-CG-TAT--TCTATAAA-TC-TACAACTTTAATTGTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAAT
gi|18 : -TTT-TCTATAAAAAATCTATCTATGA-TCACTTTTATAAGGAT-GTCA
gi|19 : AC-A--AGT--GCAT-C--TCATATGTTT-T----GCCAT-TGTCT--TT-CA-TAT--TCTATATA-TC-AACAACTTT----GCAAC-----ACC-AAAAA--C-TTT-GGTATAAAAAATATATCTATGA-TCACTTTTATAAGGAT-GTacatgcaatttaggaacatttttataactatctcaaaaataaattattttacaacaagtatcaatagattttg
gi|2 : AC-TA-CCGATAA--AGTA----ATTAGTGTATAAATATATGTTATAC-A--GTT--GCATGCTGACATATGCCT-TCTTGGTCAACTGCCTTGTT-CATTATTCTCTATAAAGTCTTACAACTT------TAACCCACAGGCGAGGGAATC-TTT-TCTAT--AAATTCTATCTATGATTCACCTTTATAGTGATGGTCA
gi|20 : GTTTAAT-TTGTTTATTTCTTTCACATATATACATGTA---------TG-CACATT-AC-AA-ATAT-AATACAAT---GACATCAACAAT-AATTTGTATATT----------AT---------A----T-ATAT-ccatgcagcttaggacatttttatatttactagcaaataaatttgtttttaacacaagtatcaatagattttttggtgttaatttatatgaatattcttattttcatatttgccaaatagtatcacttgtttatcaaagctaaacaacatgaatatcgaacttttctaaaaatcccattctttatttctttcaatttttaatacaaaacagcaaaaaaagaaaaaaaggaaaacacctaaggagttcttttacgcttggaaaacggcattcaacataatgatcaaaattgtttctcatggtgttggggtcattttttacagaaaagagtaaaaggaagaggagaatcattaactttataaacaccaaaaaaaaaaataaaagtaaaaaaaccgcaataaaatagttagtgttgtaaggttctaattctaaatcaaaatttgattgaagccaattgaaggtttagattttcgtgtggtggtttttttccttattgtttcacttccctgttggttattttttgaagggaagctcataatattttgttccatactgtcatctcaatttcttactgaataaaatattgtttctttt
gi|21 : tttttttGGTTTAATCTTGTTTATTTCTCTCACATA----CGTATACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-ATTT--CCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTAgagattgtgtat
gi|22 : tttGTTTAATCTTGTT-ATTTCTTTCACATGTATACA------TGCA---TG-CACATT-AT-GA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-
gi|23 : ttttAAAG-AAA-------T---AA-T-T-CAAATTTTCTA-TTTT----AA------GTAGC--ATGTAACCATAA-ATGAAAAT-----------------------------------CATAGTGTGTAAATATT-ACGATCT-A--AGT--GCAT-C--AC
gi|28 : TTT-T----GCTAA-TGCCT--TT-CA-TAT--TCTATA--------------T----ATGAC-----AAC-AGAAA--C-TTT-TCTATAAAAATTCTA
gi|3 : ACATATATG-ACATGCA---TG-CACATT-AT-AATATAT-A-TA-GAT---G-CAT-AACAAT-A-TG--TCTCTT----------AT---------A----T-ATAT--A---T-AATA-TTT-TTATA---A--TATAT--GTGA--A---GTTAT-ATAAA-TAGA----G-AAAGAGGGAGGGGG----TGTCA--GCAAGA-AAA-------C---AA-T-TTCAAATGTTCTA-TTGT----AA------GTAGT--A-GTAA-CGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----T-TAGTGTATGAATATA-GCTATAT-A--AAT--GCAT-T--ACATATG-TT-T----G-CAA-TGCCT--TT-CA-TAT--TCTATAAA--C-TAC-ACTTT----GT-AC-----AGC-AGGAA--C--TT-TCTATAAAAATTCTATCTATGA-TC-CCTTTCTAAGGAT-GTCA
gi|30 : GGTTTAATCTTGTTTATTTCTTTCACATATA------TACATGCA---TG-CACATT-AT-AA-ATAT-AATcatgcaatttggaacattttaatatttatcgcaaatacttgttttaacaagtatcaatagattttgtatttataaatattattatttcataattaaccaaataagtatccttgtctatcaaagctacaatgaatattgaacttactctaaaatcaatttcaattc
gi|32 : tGTTTAATCTTGTTTATTTCTTTCACATATATACATG--CATGCA---a
gi|35 : ttttttTTGTGTATTTCTTTCACATATA------TACATGCA---TG-GACATT-A
gi|4 : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATACGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-CTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATCAA-TAGA-AAAG--AAGAGGGAGGGGGAGGGTGTCA--GCAAAG-ACATTTTTTT-------T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTTC-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-T--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-GACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAGTTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|6 : AATCTTGTTTATTTTTTTT-----TTTACATATATACG-----TG-CACATT-AT-AC-ATTT-AATACAAT---TACATCAACAAT-CATT--TCTTTTGTGATATGAAAT---------A----T-ATAT-CA---T-A-TA-CTT-TTATA---A-CTAAGT--GTAA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGG----TATCA--GCAAAG-AAA-------A---AA-A-T-CAAATGTTCTA-TTGC----AA------GTAGT--ATGTAAACATAC-TTGAAAACAAA--TA-C--AGC-TATC--ATAA--AGTATAATTATATTGTATAAGTATT-GCTATCT-ACGAGT--GCAT-C--ACATATGT
gi|7 : AATCT-GTTAATT-CTTCGACAT-TATA---GTACATGCA---CATCATATTTAT-AA-ATAC-AAT---AT----ACATCAACAATTCGTT--TCTCTTGTGATAGG--AT---------A----T-ATATACA---T-A--A-CTT-TTATA---A-CTATATT-ATGA--A--AGTTAT-ATA---T-GA-AAAGTGAAGAGGGAGGG-------GTCGATGCAAGG-AAA-------A---A----T-CCAATGTTTTC-TTGTTATGAA------GTAGTTGATGCATACTTAATTTAAAAACAAGTTTACC--AAC-AT-T--ATAA--AGTA----TAT
gi|8 : ttttaaTTTAATCTTGTTTATTTCTTTCACATATATACA------TGCA---TG-CATATT-AT-AA-ATAT-AATGCGAT---TACATCAACAAT-AATT--TCTTTT----------AT---------C----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGATAT-AAAAA-TAGA-AAAG-GAAGAGGGAGGGCAAAGG-GTCA--GCAAAGAAAA-------A---AA-A-T-CAAATGTTC----TGT----AA------GTAGT--ATGTGACCATAA-TTGAAAGCAAA--TA-C--AACATA-C--A-AA--A
gi|9 : GTTTAATCTT-TGTATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAA-ATATTAATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT---------AATACT-ATAT-CA---TTA-TA-TTG-GTATA---AACTATAT--GTGA--A--AGTTATTATAGA-TAGA-AC-G-GAAGAGG----GGGAGGGTGTCA--GCAAAG-AAA-------A---AATT-T-CAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAA
blockSeqs : CGTATACA ACA T T T T T A TTACA T TG GTGATATGAA GATATGGCAA A A ATA T A T A TTGA TA AT TT T G C G A T G AGGGT AT A TTTTTTTT T T TATG GTACAT TG A T TT C CA A T CG TT TAAT AT A CG AC GCTG TCTTG T C TG C T GA TA G T AATT CCACA G AT . C A T C G
blockSeqs : CATGTACA . . . . . . A GA T . GTGATAGG AATAC . . . T . . . AA T . . T G . . A . G AGGGT . . AAATT . T . GTACAT . A . . . . . . . . . A . . . C GTA T . . . . TC AA . . . . . . . . T . A .
blockSeqs : CATATATA . . . . . . G GA T . . AATAC . . . . . . . AA . . . . A . . A . G AGGGT . . AAATA . . . . . G . . . . . . . . . A . . . C T C . . . . . AT . . . . . . . . T . A .
blockSeqs : TATGACA . . . . . . G GA . . . A . . . . . . . A . . . . A . . A . G AAGG . . AAATT . . . . . G . . . . . . . . . A . . . T T C . . . . . AA . . . . . . . . A . A .
blockSeqs : CATGCAT . . . . . . A GA . . . A . . . . . . . A . . . . A . . A . G T . . TAAT . . . . . A . . . . . . . . . T . . . C T T . . . . . AA . . . . . . . . A . A .
blockSeqs : CATGTA . . . . . . A GA . . . A . . . . . . . A . . . . A . . A . G T . . CAAT . . . . . G . . . . . . . . . A . . . C T C . . . . . AA . . . . . . . . T . . .
blockSeqs : CATGCA . . . . . . A TA . . . A . . . . . . . A . . . . A . . A . . . . . AAAA . . . . . G . . . . . . . . . A . . . T T C . . . . . A . . . . . . . . T . . .
blockSeqs : GTACA . . . . . . G TA . . . A . . . . . . . A . . . . G . . . . . . AAAA . . . . . A . . . . . . . . . T . . . T . . . . . . . . . . . . . . . . T
blockSeqs : CATG . . . . . . G GT . . . A . . . . . . . A . . . . . . . . . AA . . . . . T . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . T
blockSeqs : TACA . . . . . . . G . . . A . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : TACA . . . . . . . A . . . A . . . . . . . . . . . . . . . .
blockSeqs : TACA . . . . . . . . . . . A . .
blockSeqs : CA . . . . . . . . . C .
blockSeqs : CA . . .
blockSeqs : . .
blockSeqCons : CATGTACA *** ********** AGGGT AAATN*********** A* C***
originalCons : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAG-AAA-------A---AA-T-T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
finalCons : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAG-AAAAAATN-----------T-CAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCATC---ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAATTCTACTATGGGCAAAATTTGGAATTGAAGCCATGAAGTTAAATTCTGAGATATTTTGAAGGGAAGCTCAAATTTATTTTGTTCCATACTGCTACTGAAAAGAAATATTGTTTTCTTTCATTAGAAATACAAGTAGAACCTTTTTTCATTAATAATATAATTTACATATTTTACATCCTGTCTTGTTTCATAAAATACAGAAATGATTGAGGATTGGTCCTTCATTTTAGTATGTTAATTTCATTAATATCTGTATTTTTTAAAATTTTAACTGGCTCTCTTACGGCACTGCATCAACATAATTTG
Unaligned ( gi|24 ): CTTTAACCGAAATAAATAGTAGTTTGTAGGTCTAATTCTATGCAAAATTTTGAATTGAAGCCATTGAAGTTTAGATTCCTG
Unaligned ( gi|25 ): ATAGACCTTTATAATGAGTTAAACCATTACAAATTGTTCGATATTCTCTCGTTATACATTGAATAC
Unaligned ( gi|26 ): TCTATGTTAACTTTAATCATTCAACAGTGTTCATTATCGTTTCGTTATACATCGAATACCTT
Unaligned ( gi|27 ): AATTATGTTGATTTAAATGATTCAAAAATGTTCATAATCCTTTAGTTGTACATTGAATACC
Unaligned ( gi|29 ): GCATTATAAATTACATCTACCATAATTTCTCTTGTAATAGGAAATATATATCATACTTTT
Unaligned ( gi|31 ): AATGGAAAATAGTATTCAGTATCACTACTGTATATGAATAAATTCTTGACTACC
Unaligned ( gi|33 ): CATTTATCAGTCATGTAAATTTTATGTACTTCACTTTCATATTTA
Unaligned ( gi|34 ): AAAAAAAATCAAAGCCTCTTTGTTGTATGTTGTAAACTTAA
Unaligned ( gi|36 ): AATAAAATATGTTCAAATCACGTGAATTTGATTTACTT
Unaligned ( gi|37 ): AGAATGGCGAAGTAACAATGTATTAAACGTTATTAAA
Unaligned ( gi|38 ): AAATGGCGAAGTAACAATGTATTAAACGTTATTAA
Unaligned ( gi|39 ): GGTCGGTCGGTTGACAGTAAATTAGATGGAAATG
Unaligned ( gi|40 ): AAAATGGTTAATAATGAGCGGCAGTTTATTAACT
Alignments
lowQualScore : 22222222 3333333333 11111111111111 11111 111111 111111 111111 11 11111
lowQualScore : 11111111 888 2 2 5 2 5 3 77777 8 33 5555555555 66666666666666 2 3 555 6 3 3 3 00000 88 55 55 7 4 3 3 2 3 2 1 66 6 66 777777 99 6 7777 999999 44 1 3 55 3 55 3 3 44 44 7777 77 3 55 55 7777 444444 2 4 55 4 4 11 66 4 4 8888 00000 4 55 3 3 2 5 6 5
lowQualScore : ........ ... . . . . . . ..... . .. .......... .............. . . ... . . . . ..... .. .. .. . . . . . . . . .. . .. ...... .. . .... ...... .. . . .. . .. . . .. .. .... .. . .. .. .... ...... . . .. . . .. .. . . .... ..... . .. . . . . . .
lowQualScore : 00000000 888 7 7 7 9 7 8 55555 6 99 4444444444 33333333333333 9 1 888 7 3 3 3 55555 66 00 00 3 0 6 6 1 6 9 1 44 2 99 000000 88 7 1111 222222 66 0 6 00 6 00 3 3 66 66 7777 55 6 00 00 5555 888888 3 0 55 0 0 00 88 0 0 5555 00000 0 55 6 6 5 0 2 0
consensus : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAGAAA------AAATTTCAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
Reference ( family-779 ) : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGGGGGAGGGTGTCA--GCAAAGAAA------AAATNTCAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-C--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAATTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|1 : TTAACAAT-CATT--TCTCTTGTGATATGAAAT---------A----T-ATAT-CA---T-A-TA--TT-TCATA---G-CTATAT--GGGA--A--ATTTAT-ATAAA-TAGA-AAAG-GAAGAGAAAAGGGGGTGG-GTCA--GCAAAGAAAAC----AAAATTCAAATGTCCTA-TTAT----AA------GTAGT--ATGTAAACATGA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGCGTATAA--------------------------------ATGTGTTT-T----ACCAA-TGCCT--TT-TA-CAT--TCTATATA-TC-TACAACTTT----GTAAC-----AAC-A-GAA--CATGT-TCTATAAAAATTCTTTCTATGA-TCATCTTTATAAGGAT-GTCA
gi|10 : ATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAA-ATATTAATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT---------AATACT-ATAT-CA---TTA-TA-TTG-GTATA---AACTATAT--GTGA--A--AGTTATTATAGA-TAGA-AC-G-GAAGAGG----GGGAGGGTGTCA--GCAAAGAAA------AAATTTCAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAAacatacaatttaggaacaccttgcaaaaataagatgttttacaagtatcaatgtattttttaattcataaatattgttattttcatatttgccaaataatattccttgtttatcaaagttacaatggatattgaacttctctaaaactcattcctcaattatataccaaagttattgtacttggaaactttcaacaaataaatgatcaattgtttctgtgctattttacaaacaaagtacatgaaggggagtctattaactttaaccgaaataaatagcagtttgtagggacaattctatgcaaaatttggaattgaagcgcgtgaagtttagattcctggtttattataaatggaagcccaaatattttgttccatactgcatcacttaataaaatattgttttatttcaatttaccagtgttatgaatttgatttacttgacttttgtcctttcttatgatgattttaataatttaaatatgttaatatcctttcgttacacattgaatacc
gi|11 : AA------AAATATCAAACATTCTA-TTGT----AA------GTAGT--ATGGAAACATAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAATGTATAAATATA-CCTATAT-A--AGT--ACAT-C--ATATATGTTT-T----GTCAA-TGCCT--TT-CA-TAT----GAT--A-TC-TACAACTTT----GTAAC-----AAC-AGAAA--C-TTT-TCTTTAAAAAAAATATTTATGA-TCCCCTTTATAAGAAT-GTCAg
gi|12 : CAAATGTTCTA-T-GT----AA------GTAGT--ATGGAAACATAA-TTGAAAACAAA--TA-CCAAAC-TA-C--ATAA--AGTA----TATAATGTATAAATAT---CTATATAA--AGTACACAT-C--AATTATGTTTGTA---GTCAA-TGCCT--TTCCA-TATGATC-----A-TC-TACACTCTT----GTAAC-----AAC-AGAAA--C-TTTCTTTAAAAAAA---TATTTATGA-TC-CCTTTCTA---GT-GTCAc
gi|13 : CAAATCGTCTA-TTGT----AA------GTAGT--ATGTAAACGTAA-ATGAAAACAAA--TA-C--AAC-TA-C--ATAA---GTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-T--ACATATGTTT------GCCAA-TGCCT--TT-CA-TAT--TCTAATAA-TC-TACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TC-ATAAAAATTCTATCTc
gi|14 : aTGTTTATTTCTTTCACATATATA----------CA---TG-CATATT-AT-AA-ATTT-CATACAATTTACACATCAACAAT-CATT--TCTCTT----------ATGATATGGCAA----T-ATAC-GA---T-G-TA-TGTATTATATTGA-CAGCAC--GCCAATA--AGCTA--ATA----AGA-AAAG-AGAGAG
gi|15 : gtttttttacatactaGTTTAATCTTGTTTATT-CTTTCACATATATACATG------CA---TG-CACATT-AT-AA-ATAT-AA--CGAT---GACATCAACAAT-AATT--TTTCTT----------AT---------A----TAATAT-CA---T-A-TATTTT-TTATA------TATATTAGTGT--A--AGTTAT-ATTGA-TAGA-AAAG-GAAGAGGGAAGGG
gi|16 : ttGTTTAATCTCGTT-ATTTCTTTCAC-TATATA----TACATGCA---TA-TACG---AG-AA-ATAT-A---------------CCATAGT-ATTT--TCTC------------AT---------A----T-ATAT-CAATAC-A-TA-TTT-TTATA---A-CTATAT--CTTG--ATTAGTTAT-CTAAACTAGAGAAAG-GGAtgt
gi|17 : tttttAACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATATTTAGTA----TATAGTGTATAAATATA-GCTATAT-A---------------------------------------CCT--TT-CG-TAT--TCTATAAA-TC-TACAACTTTAATTGTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAAT
gi|18 : -TTT-TCTATAAAAAATCTATCTATGA-TCACTTTTATAAGGAT-GTCA
gi|19 : AC-A--AGT--GCAT-C--TCATATGTTT-T----GCCAT-TGTCT--TT-CA-TAT--TCTATATA-TC-AACAACTTT----GCAAC-----ACC-AAAAA--C-TTT-GGTATAAAAAATATATCTATGA-TCACTTTTATAAGGAT-GTacatgcaatttaggaacatttttataactatctcaaaaataaattattttacaacaagtatcaatagattttg
gi|2 : AC-TA-CCGATAA--AGTA----ATTAGTGTATAAATATATGTTATAC-A--GTT--GCATGCTGACATATGCCT-TCTTGGTCAACTGCCTTGTT-CATTATTCTCTATAAAGTCTTACAACTT------TAACCCACAGGCGAGGGAATC-TTT-TCTAT--AAATTCTATCTATGATTCACCTTTATAGTGATGGTCA
gi|20 : GTTTAAT-TTGTTTATTTCTTTCACATATATACATGTA---------TG-CACATT-AC-AA-ATAT-AATACAAT---GACATCAACAAT-AATTTGTATATT----------AT---------A----T-ATAT-ccatgcagcttaggacatttttatatttactagcaaataaatttgtttttaacacaagtatcaatagattttttggtgttaatttatatgaatattcttattttcatatttgccaaatagtatcacttgtttatcaaagctaaacaacatgaatatcgaacttttctaaaaatcccattctttatttctttcaatttttaatacaaaacagcaaaaaaagaaaaaaaggaaaacacctaaggagttcttttacgcttggaaaacggcattcaacataatgatcaaaattgtttctcatggtgttggggtcattttttacagaaaagagtaaaaggaagaggagaatcattaactttataaacaccaaaaaaaaaaataaaagtaaaaaaaccgcaataaaatagttagtgttgtaaggttctaattctaaatcaaaatttgattgaagccaattgaaggtttagattttcgtgtggtggtttttttccttattgtttcacttccctgttggttattttttgaagggaagctcataatattttgttccatactgtcatctcaatttcttactgaataaaatattgtttctttt
gi|21 : tttttttGGTTTAATCTTGTTTATTTCTCTCACATA----CGTATACATGCA---TG-CACATT-AT-AA-ATAT-AATGCGAT---GACATCAACAAT-ATTT--CCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-TTT-TTAgagattgtgtat
gi|22 : tttGTTTAATCTTGTT-ATTTCTTTCACATGTATACA------TGCA---TG-CACATT-AT-GA-ATAT-AATGCGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-
gi|23 : ttttAAAGAAA------TAAT-TCAAATTTTCTA-TTTT----AA------GTAGC--ATGTAACCATAA-ATGAAAAT-----------------------------------CATAGTGTGTAAATATT-ACGATCT-A--AGT--GCAT-C--AC
gi|28 : TTT-T----GCTAA-TGCCT--TT-CA-TAT--TCTATA--------------T----ATGAC-----AAC-AGAAA--C-TTT-TCTATAAAAATTCTA
gi|3 : ACATATATG-ACATGCA---TG-CACATT-AT-AATATAT-A-TA-GAT---G-CAT-AACAAT-A-TG--TCTCTT----------AT---------A----T-ATAT--A---T-AATA-TTT-TTATA---A--TATAT--GTGA--A---GTTAT-ATAAA-TAGA----G-AAAGAGGGAGGGGG----TGTCA--GCAAGAAAA------CAATTTCAAATGTTCTA-TTGT----AA------GTAGT--A-GT-AACGTAA-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----T-TAGTGTATGAATATA-GCTATAT-A--AAT--GCAT-T--ACATATG-TT-T----G-CAA-TGCCT--TT-CA-TAT--TCTATAAA--C-TAC-ACTTT----GT-AC-----AGC-AGGAA--C--TT-TCTATAAAAATTCTATCTATGA-TC-CCTTTCTAAGGAT-GTCA
gi|30 : GGTTTAATCTTGTTTATTTCTTTCACATATA------TACATGCA---TG-CACATT-AT-AA-ATAT-AATcatgcaatttggaacattttaatatttatcgcaaatacttgttttaacaagtatcaatagattttgtatttataaatattattatttcataattaaccaaataagtatccttgtctatcaaagctacaatgaatattgaacttactctaaaatcaatttcaattc
gi|32 : tGTTTAATCTTGTTTATTTCTTTCACATATATACATG--CATGCA---a
gi|35 : ttttttTTGTGTATTTCTTTCACATATA------TACATGCA---TG-GACATT-A
gi|4 : GGTTTAATCTTGTTTATTTCTTTCACATATATACATGTACATGCA---TG-CACATT-AT-AA-ATAT-AATACGAT---GACATCAACAAT-AATT--TCTCTT----------AT---------A----T-ATAT-CA---T-A-TA-CTT-TTATA---A-CTATAT--GTGA--A--AGTTAT-ATCAA-TAGA-AAAG--AAGAGGGAGGGGGAGGGTGTCA--GCAAAGACATTTTTT---TTTCAAATGTTCTA-TTGT----AA------GTAGT--ATGTAAACGTTC-TTGAAAACAAA--TA-C--AAC-TA-C--ATAA--AGTA----TATAGTGTATAAATATA-GCTATAT-A--AGT--GCAT-T--ACATATGTTT-T----GCCAA-TGCCT--TT-CA-TAT--TCTATAAA-TC-GACAACTTT----GTAAC-----AGC-AGGAA--C-TTT-TCTATAAAAGTTCTATCTATGA-TCACCTTTATAAGGAT-GTCA
gi|6 : AATCTTGTTTATTTTTTTT-----TTTACATATATACG-----TG-CACATT-AT-AC-ATTT-AATACAAT---TACATCAACAAT-CATT--TCTTTTGTGATATGAAAT---------A----T-ATAT-CA---T-A-TA-CTT-TTATA---A-CTAAGT--GTAA--A--AGTTAT-ATAAA-TAGA-AAAG-GAAGAGGGAGG----GGGTATCA--GCAAAGAAA------AAA-ATCAAATGTTCTA-TTGC----AA------GTAGT--ATGTAAACATAC-TTGAAAACAAA--TA-C--AGC-TATC--ATAA--AGTATAATTATATTGTATAAGTATT-GCTATCT-ACGAGT--GCAT-C--ACATATGT
gi|7 : AATCT-GTTAATT-CTTCGACAT-TATA---GTACATGCA---CATCATATTTAT-AA-ATAC-AAT---AT----ACATCAACAATTCGTT--TCTCTTGTGATAGG--AT---------A----T-ATATACA---T-A--A-CTT-TTATA---A-CTATATT-ATGA--A--AGTTAT-ATA---T-GA-AAAGTGAAGAGGGAGGG-------GTCGATGCAAGGAAA------AA---TCCAATGTTTTC-TTGTTATGAA------GTAGTTGATGCATACTTAATTTAAAAACAAGTTTACC--AAC-AT-T--ATAA--AGTA----TAT
gi|8 : ttttaaTTTAATCTTGTTTATTTCTTTCACATATATACA------TGCA---TG-CATATT-AT-AA-ATAT-AATGCGAT---TACATCAACAAT-AATT--TCTTTT----------AT---------C----T-ATAT-CA---T-A-TA-TTT-TTATA---A-CTATAT--GTGA--A--AGATAT-AAAAA-TAGA-AAAG-GAAGAGGGAGGGCAAAGG-GTCA--GCAAAGAAA------AAAAATCAAATGTTC----TGT----AA------GTAGT--ATGTGACCATAA-TTGAAAGCAAA--TA-C--AACATA-C--A-AA--A
gi|9 : GTTTAATCTT-TGTATTTCTTTCACATATATACATGCAT-TGCAACATG-CACATT-ATTAA-ATATTAATGCGAT---GTCATCAACAATTAATT--TCTCTT----------AT---------AATACT-ATAT-CA---TTA-TA-TTG-GTATA---AACTATAT--GTGA--A--AGTTATTATAGA-TAGA-AC-G-GAAGAGG----GGGAGGGTGTCA--GCAAAGAAA------AAATTTCAAATGTTCTATTTGT----AAGTACATGTAGT--ATGTAAA
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CAATTCTACTATGGGCAAAATTTGGAATTGAAGCCATGAAGTTAAATTCTGAGATATTTTGAAGGGAAGCTCAAATTTATTTTGTTCCATACTGCTACTGAAAAGAAATATTGTTTTCTTTCATTAGAAATACAAGTAGAACCTTTTTTCATTAATAATATAATTTACATATTTTACATCCTGTCTTGTTTCATAAAATACAGAAATGATTGAGGATTGGTCCTTCATTTTAGTATGTTAATTTCATTAATATCTGTATTTTTTAAAATTTTAACTGGCTCTCTTACGGCACTGCATCAACATAATTTG
Unaligned ( gi|24 ): CTTTAACCGAAATAAATAGTAGTTTGTAGGTCTAATTCTATGCAAAATTTTGAATTGAAGCCATTGAAGTTTAGATTCCTG
Unaligned ( gi|25 ): ATAGACCTTTATAATGAGTTAAACCATTACAAATTGTTCGATATTCTCTCGTTATACATTGAATAC
Unaligned ( gi|26 ): TCTATGTTAACTTTAATCATTCAACAGTGTTCATTATCGTTTCGTTATACATCGAATACCTT
Unaligned ( gi|27 ): AATTATGTTGATTTAAATGATTCAAAAATGTTCATAATCCTTTAGTTGTACATTGAATACC
Unaligned ( gi|29 ): GCATTATAAATTACATCTACCATAATTTCTCTTGTAATAGGAAATATATATCATACTTTT
Unaligned ( gi|31 ): AATGGAAAATAGTATTCAGTATCACTACTGTATATGAATAAATTCTTGACTACC
Unaligned ( gi|33 ): CATTTATCAGTCATGTAAATTTTATGTACTTCACTTTCATATTTA
Unaligned ( gi|34 ): AAAAAAAATCAAAGCCTCTTTGTTGTATGTTGTAAACTTAA
Unaligned ( gi|36 ): AATAAAATATGTTCAAATCACGTGAATTTGATTTACTT
Unaligned ( gi|37 ): AGAATGGCGAAGTAACAATGTATTAAACGTTATTAAA
Unaligned ( gi|38 ): AAATGGCGAAGTAACAATGTATTAAACGTTATTAA
Unaligned ( gi|39 ): GGTCGGTCGGTTGACAGTAAATTAGATGGAAATG
Unaligned ( gi|40 ): AAAATGGTTAATAATGAGCGGCAGTTTATTAACT