lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111 22222222222222222222 11111111111
lowQualScore : 3 111 222 1111 22 1 1 11 11 1 1 1 1 1 11 111 11 333333333 22 2222 1 111111 111 11111 6666666666666666666666666666666666666666666666666666666666666 1 4444444444444444 1 333333 1 111 1 1 111111 111111111 55555555555555555 11 3333333333333333333333333333333333333333 11111 222222 2222 11 22222 1 1 333333333333333333333333 2222222222 888888888888888888888888 11111 1 22222222222222222222 1 1 00000000000 2
lowQualScore : 2 0 2 2 0 2 3 111 2 2 2 3 888 7 2 1111 2 8 2 66 77 0 4 1 3 0 22 33 2 0 0 0 0 0 33 000 3 22 2 6 6 111111111 0 0 22 0 7777 7 6 3 6 6 6 999999 1 000 66666 6 6 2222222222222222222222222222222222222222222222222222222222222 5 77 7 8888888888888888 6 6 6 7 3 6 99 6 555555 3 6 6 1 222 5 6 7 99 6 6 6 6 1 6 6 6 999999 6 6 666666666 88888888888888888 0 11 8 1 4444444444444444444444444444444444444444 8 8 11111 8 888888 8 8 8 8888 11 0 44444 0 3 0 5 3 777777777777777777777777 7777777777 111111111111111111111111 8 6 55 22222 7 0 55555555555555555555 2 5 5 11111111111 0 2 6
lowQualScore : . . . . . . . ... . . . . ... . . .... . . . .. .. . . . . . .. .. . . . . . . .. ... . .. . . . ......... . . .. . .... . . . . . . ...... . ... ..... . . ............................................................. . .. . ................ . . . . . . .. . ...... . . . . ... . . . .. . . . . . . . . ...... . . ......... ................. . .. . . ........................................ . . ..... . ...... . . . .... .. . ..... . . . . . ........................ .......... ........................ . . .. ..... . . .................... . . . ........... . . .
lowQualScore : 2 0 0 5 2 5 2 000 2 2 2 0 000 0 5 0000 2 8 0 00 22 0 0 0 7 0 00 88 2 0 0 0 5 0 88 888 2 22 5 7 7 111111111 1 7 55 6 0000 3 7 3 7 7 7 222222 7 222 00000 7 7 8888888888888888888888888888888888888888888888888888888888888 7 99 0 0000000000000000 7 7 7 3 3 7 22 7 888888 3 7 7 7 222 3 7 3 22 7 0 7 7 7 7 7 0 222222 7 7 222222222 55555555555555555 8 00 0 4 2222222222222222222222222222222222222222 0 0 66666 0 000000 0 0 0 2222 00 8 00000 0 2 8 0 3 444444444444444444444444 0000000000 888888888888888888888888 0 6 66 00000 8 6 22222222222222222222 5 0 0 00000000000 0 5 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGATAT-A-CATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGTCGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAANTGGAG-ATTACCCTGGGAAGTCTGCNATCACCTTTCTGCCGATGATAGATATGNACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACT--TTNGACCAGCCTCTCTAC-ATGANAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGGTACGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-G------A------------T------------GC--------A-------T--------TA-TGAG--AGAGTCG----AG-GTNT----G-C-A-GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAA--NGCGG-TAGCTCGAGCAA--CTCGT-GCCC-A-TTTTCTAG-TTGA-TACAGCCCTTC------GTACCTTGC-TTANG--G-NAAAATCTT-----TTG------GTGTCGAATTG--CCT-GATAATGATTGTGCCCCAGAA-------------TATAT-T--A----TTCT-TGTA-ACA-CC-AGTGAC-ACAGAA--GG-CC-C-TG-AT-CATAT--CCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-GGCAAGAAAATC-T-AC-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG---TTGC--TAG-AGGGAGAT-GATACTGC--G--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGGACGCA-NGT-CCCTC-TCTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( gi|1 ) : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGATAT-A-CATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAA-ATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACT--TTAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT--------A------------T------------GC--------A-------T--------TA-TGAG--AGTGTC-----AG-GTAT----G-C-A-GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAA--AGCTG-TAGCTCGAGCAA--CTCGT-GTCC-A-TTTCCTAG-TTGA-TACAACCCTTC------ATACCTTGC-TGATG--G-AAAAATATT-----TTA------GTGTCGAATTG--CCT-GATAATGA-TGTACCCCAGAA-------------T-------------TTCT-TGTA-ACA-CC-AGTGAC-ACAGA---GG-CC-C-TG-AT-C--AT--CCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-GGCAAGAAAATC---AC-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA---TTGC--TAGAAGGGAGAT-GTTATTGC--G--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCA-AA--------TCTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGATAT-A-CATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAA-ATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACT--TTAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGATATTA-CATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTAAAAAT--AAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACC--TTTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGATAT-A-CATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAG-TCAAAATGGAG-ATTA
gi|2 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagTTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGA-AT-AACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAG-ATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTA-TCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGTAG------A------------T------------GTATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG-GATT----G-C-A-GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAA--AGCGG-TAGCTCGAGCAAAGCTCGT-GCCC-A-TTT-CTAG-TTGA-TACAGCCCTTC------ATA-CTTGCTTTATG--GCAAAAATG-C-----TTG------GTGTCGAATTGTCCCA-GATTAT-A-T---CTTCAGAT-------------T-------------TTTT-TGTA-ACA-CCTAGTGAC-ACAGA---GG-CCTC-TG-AT-CATAT--CCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-GGCAAGAAAATA---AC-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG---TTAC--TAG-AGGAAGAT-GTTATTGT--G--CAAGACGTTTGTAATCAT
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|9 : TTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACT--TTTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT--------AGGATGTTTCCGGT------------GC--------A-------T--------TA-TGAG--AGAATC-----GG-GATT----G-C-A-GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-G-AA--AGTGG-TAGCTCGAGCAA--TCCGT-GCCC-A-TTTTCTAG-TTGA-TACAGCTCTTC------GTACCTTGT-TTGTG--G-CAAAATCTG-----TTG------GTGTCAAATTG--CCT-GATAATGA-TGTGCC-----------------------------------------------CC-AGTGAC-ACAGA---GGCCC-C-TG-CT-CATAT--CCTTACTG-ATCC---GCGGACGTTTCTACAATCCAAC-
gi|6 : AGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT--------AGGGAA-------T------------GT--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAG-ATGTTTGCG-C-ATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAA--CGCGGGTAG-TCG-GCAA--CTCGTTGCCC-AGTTTTCTAGATTGA-TACAGCCCTG---------ACCTTGC-TAAGG--C-ACAAAT-TC-----TTAAAAATTGTGTTGAATTG--CCTCGATTATGATTGT---CCAGAA-------------TATATTTCGACTTATTCTCTGTA-ACA-AC-CGTGAC-ACAGAAACGC-CC-C-TGAAT-A--AT--ACCTGCTGAGTCCG--AAAGA-GTTTTTACAAT-GAACAAGCAAGAAAATCTT-ATACTGCTC-A----GTATCCAAGCTGCAGCCTT---GACTTGATATGAG-----GA-CACGCTTGCTTTAG-AGGGAGAT-GATACTGCGGG--CAAGACGTTTCT-ATCATCCTACCGTAC-----T------------GAGAAACTTGAGAACGCA-TGTGCCTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATTcacag
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGGA------------T------------GT--------AAGGGCGAT--------TA-TGAGGAAGAGTCGA---AGAGTATT---G-CGA-GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAA-TTTTCTA--TTGATTACAGCCCTTC------AGA-CTTGC-TTAAG--G-CCAAATCTTAAAAATT-------GTGTTG-ATTG--CTC-GATATTGATTGT-TCCCAGAATATATTGTTCGACT-------------TTCT-TGTACACA-C---GTGACAACAGAAC-GC-CC-C-TG-ATAT--AT--CCCTGTGGAGTCCTGAAAAGA-GTTT-TAC-ATCGAACAGGCAAGAAAATTATAAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG---TTGC--TTAGAGGGAGATCGATACTGC--GGTCAAGACGTTTCT-ATCATCC-A-----------------CGTACTGGAGAAACTTG-AGAAGCA-TGTCTCCTT-TCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|13 : ctcttaactCAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT--------G------------TGATGTATCGGGCGC--------A-------T--------TA-TGAG--AG
gi|11 : TGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTTGGGATGT-A------------TCGGGC-------GC--------A-------T--------TA-TTAG--AGAATC-----AG-G-AT----GGC-A-AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAA--AGCAG-AAGCTTGAGCAA--CCCTT-GCCC-A-TTTTCTAG-TTGA-TACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTATT-----
gi|8 : tcacactg------------GC--------A-------T--------TA-TGAG--AGAGTCG----AG-AT-T----G-C-A-GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAA--CGCGG-TAGCTCGAGCAA--CTCGT-GCCC-A-TTTTCTAG-TTGA-TACAGCCCTTC------ATACCTTGC-TTAAG--G-CAAAATCTTAAAA-TTG------GTGTTGAATTG--CCT-GATAATGA-TGTGCCCCAGAA-------------TATATCTTCAGACTTTCT-TGTA-ACAACC-AGTGAC-ACAGA---CG-CC-CCTG-AT-C--ATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-GGCAAGAAAATC---AC-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG---TTGC--TAG-AGGGAGAT-GATACTGC--G--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGC--------TCTTCTCTTAAGTGCTTCAAAC-CAGCAGCCCTCTGGCTTCAGTACTggtttaactaaattac
gi|10 : ggatgtatagggcAAC-GGCAGGATAATT---AA-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA-------------------------GTT-------G--CACGACGTTTCTAATCATCC----------------TACTGTACTTGAGAAACTTGCGGGCACA-AAA-------TCTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 333 11 11 11 22222 11 33 1 111111 11111 22222222222222222222222222222222222222222222222 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 1111 11111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 777777777 1
lowQualScore : 0 8 88 777 9 6 1 22 1 1 1 1 8 8 11 8 8 8 1 8 8 1 2 0 8 1 5 5 33 55555 99 00 5 5 1 5 5 5 666666 0 777 22222 5 5 5 5 66666666666666666666666666666666666666666666666 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 0000 6 6 2 3 22222 2 1 2 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 0 66666666666666666 5 0 1 111111111 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . . . ............................................... . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . . ............ . . .. . ................................... . . . . .... . . . . ..... . . . . . ........ .......... .......... ......... . .. . . . .. . ................. . . . ......... . .
lowQualScore : 0 0 88 333 6 2 4 00 0 4 0 0 0 0 00 0 0 0 4 0 0 0 2 8 0 0 7 7 88 00000 33 77 0 7 4 7 7 7 444444 1 333 44444 7 7 7 7 66666666666666666666666666666666666666666666666 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 0000 7 7 5 7 77777 5 0 5 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 8 22222222222222222 0 6 0 222222222 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-ACC-GACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGC-TTTT-TA-G--------G------AT---------GC--------A-------TTA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCCC-GATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAA--GCCCC-TGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT-C-C-TC-TCTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGTCGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAANTGGAGATTACCCTGGGAAGTCTGCNATCACCTTTCTGCCGATGATAGATATGNACGCAAGCGATATGTCGTGTATTTTTTCTAC-ACT-GACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TNGACCAGCCTCTCTAC-ATGANAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGGTACGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGC-TTTT-T-----------G------AT---------GC--------A-------TTA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGNA-AAATCTT-----T-----TGGTGTCGAATTGCCT-GATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAA--GGCCC-TGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGGACGCANGT-C-CCTC-TCTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-ACC-GACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGC-TTTT-T------------------AT---------GC--------A-------TTA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCCT-GATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAG-A--GGCCC-TGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA---------TCTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA-------A-TCTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : GTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGC-TTTT-T-----------GGGATGTATCGGGC----GC--------A-------TTA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : tcacactCAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTTGT-----------G------ATGTATCGGGCGC--------A-------TTA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAACT-GACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGC-TTTG-TA----------G------AT---------GTATCGGGCGA-------TTA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTCC-CA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTC-TGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-ACC-GACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGC-TTTT-TAGGGAATGTATG------AG---------GCG-------A-------TTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCC-TGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCT-ATCATCCTAC----------------CGTACT-GAGAAACTTGAGAACGCATGTGC-CTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGC-TTTT-TTAGGGAG----G------AT---------GT--------AAGGGCGATTA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCTC-GATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAA--CGCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGT-CTCCTT-TCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaact---------GC--------A-------TTA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCCT-GATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCC-TGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG-------C-TCTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtatagggcTTTTTTTTAA-ACT-GACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGC-TTTT-TAGGATGTTTCCG------GT---------GC--------A-------TTA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCCT-GATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCC-TGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 111 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 666666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 888 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 444444444 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . ... . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . ......... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 333 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 222222222 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG--T--C-TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAA--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG--T--CCTCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA---------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA--------AT-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATG--TGCCTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGTCT--CCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG--------CT-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 2222222222 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . .......... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT---CTC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA----------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------A---T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTC---TTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGT---CTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------C---T-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 3333333 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . ....... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT--C-TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA-------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------AT-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGTCTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------CT-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 2222222222 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . .......... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT---CTC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA----------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------A---T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTC---TTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGT---CTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------C---T-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 3333333 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . ....... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT--C-TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA-------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------AT-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGTCTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------CT-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 2222222222 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . .......... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT---CTC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA----------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------A---T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTC---TTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGT---CTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------C---T-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 3333333 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . ....... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT--C-TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TCT-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA-------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------AT-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGTCTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------CT-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 11 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 11 77777777777777777777777777777777777 11 111 33333333 2222222222 2222222222 333333333 11 11 55555555555555555 6666666666 1
lowQualScore : 0 8 88 333 3 3 1 22 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 6 5 88 1 88888888888888888888888888888888888 6 6 6 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 0000000000 333333333 6 55 6 6 3 88 7 0 66666666666666666 0 1 2222222222 8 0 5
lowQualScore : . . .. ... . . . .. . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ . . .. . ................................... . . . . .. . . . ... . . . . . . ........ .......... .......... ......... . .. . . . .. . . ................. . . .......... . . .
lowQualScore : 0 0 88 333 8 8 4 00 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 7 5 77 0 22222222222222222222222222222222222 7 7 7 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 8888888888 000000000 7 88 7 7 7 33 3 8 22222222222222222 6 4 0000000000 0 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT---CTC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTA-CCCCAGAAT--------------------TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------TATGAT-----CA-AA-TTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCAAA----------T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------GATGAC-----CA--G-TTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAA------A---T-CTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAATTGTC-CCA----GATTATATCTTCAG-----A---TT------------TTT-------T-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAGTA-AAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAGT-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT----CCAGAATATA---TTTCGACTTA----TTC-------TCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGATATGAGGA---CA-CGCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTC---TTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT--TCCCAGAATATA---TT-------G----TTCGACTTTCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGACACAG-TTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGT---CTCCTTT-CTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTG-CCCCAGAATATATCTTC-------AGACTTTC-------T-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------TATGAC-----C--AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATG------C---T-CTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTG-CC------------------------------------------------CC-AGTGACA-CAGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
blockSeqs : C A TT ACA T A T AA A G A T TT G T A T T G T T A C A GT GGTGG TT TA A G T A T G TATCAC TG GTTT G C TAGGGAGGATGTAAGGGCGAT A GA GGAAGAGATGTTT G CAT T A T GG A TTCGAA G G T A CG G A AG T G A T GTACATGT T T T C TTAAAAA T T AT T AATATATTTCGACTTATTCTC C A T A AC A C A TGA C C C C A A CTTATA GTATCG GACTTGA AGAGACACA C TT . C T GG A T A TGCCTTC T G
blockSeqs : C . T ACA C T C TA T A . . . . . . A . . A G . . . GT GGTGG A TA A . T . . . . GT TA . . AGGGAATGTATGAGGCGAT . . GAAGAGTATT . . T A . . . TTTGA G . . A . . A . . A . . AT . T T . TAAAAAT . T G C AATATATTGTTCGACTTTCT . . . . C . A G . A A T G . . TATAAC GTATC CGGG GACAC . T . . A GT A C T TCTCCTT . G
blockSeqs : C . T . T T C T A T . . . . . . T . . T A . . . . . A . A . . . . . . G TA . . GGGATGTATCGGGCGCAT . . AGGATG . . T . . . . . . . . C . . A . . . . . AG . T A . TAAAAT . T G C AATATATCTTCAGACTTTCT . . . . . . C G . A C C G . . TAA AG G CA . . . . A . A C T A . C
blockSeqs : . . . . . . . T A G . . . . . . T . . T A . . . . . . . A . . . . . . A T . . GTGATGTATCGGGCGCAT . . AGGATT . . T . . . . . . . . C . . A . . . . . AT . T A . AT . . . C ATTTTTT . . . . . . C G . A C C G . . AAC AG G CA . . . . A . . . T C . .
blockSeqs : . . . . . . . . . . . . . . T T . . AGGATGTTTCCGGTGCAT . . GAGATT . . . . . . . . . . . C . . . . . . . . GT . T A . CT . . . . . . . . . . . . . . C . . C . . CAC AT G CA . . . . . . .
blockSeqs : . . . . . . . . . . . . . G T . . AGATGTATCGGGCGAT . . GGGATT . . . . . . . . . . . . . . . . . . . . G . . T . GT .
blockSeqs : . . . AGGGCGCAT . .
blockSeqCons : T* G* AATATATCTCGACTTTCT***************** CA******* C**************** N*********
originalCons : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGTACAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATA---TT-------A----TTC-------T-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGAC-----CA-AG-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGT----TC---T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
finalCons : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAGT-CAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTG-CCCCAGAATATATCTCGACTTTCT-----------------TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------TATGACCA-------G-TTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTACC----------------GTACTGGAGAAACTTGAGAACGCATGN---------T-CTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC
Alignments
lowQualScore : 1 222 111 11 11 22222 11 11 1 111111 11111 888888888888888888888888888888888888888888888888888888888888888888 2222222222222222 111 1 333333 1 1 11111111 333333333333 1 3333333 111 11 111 33333333 2222222222 22222222222222 111 11111 11 11 55555555555555555 5555555555 1
lowQualScore : 0 8 88 333 3 3 1 777 1 1 0 0 8 8 11 8 8 8 1 8 8 1 1 0 8 5 5 33 55555 66 55 5 5 1 5 5 5 666666 0 777 22222 5 5 222222222222222222222222222222222222222222222222222222222222222222 5 66 9999999999999999 5 000 5 1 5 77 5 000000 1 5 5 6 77 5 5 77 5 1 5 5 77777777 5 1 1 5 222222222222 88 9 9 3 3333333 1 99 6 6 6 666 6 55 6 2 3 111 1 2 1 1 5 6 55555555 4444444444 77777777777777 111 77777 6 55 6 6 3 88 7 0 66666666666666666 0 2222222222 0 5
lowQualScore : . . .. ... . . . ... . . . . . . .. . . . . . . . . . . . . .. ..... .. .. . . . . . . ...... . ... ..... . . .................................................................. . .. ................ . ... . . . .. . ...... . . . . .. . . .. . . . . ........ . . . . ............ .. . . . ....... . .. . . . ... . .. . . . ... . . . . . . ........ .......... .............. ... ..... . .. . . . .. . . ................. . .......... . .
lowQualScore : 0 0 88 333 8 8 4 444 4 4 8 2 0 0 00 0 0 0 4 0 0 4 4 8 0 7 7 88 00000 99 77 0 7 4 7 7 7 444444 1 333 44444 7 7 111111111111111111111111111111111111111111111111111111111111111111 0 99 4444444444444444 7 000 0 4 7 99 7 777777 4 7 7 6 99 7 0 99 7 4 7 7 00000000 7 4 0 7 000000000000 88 5 3 2 8888888 0 22 7 7 7 333 7 88 7 5 7 777 0 5 0 0 7 7 22222222 2222222222 55555555555555 777 77777 7 88 7 7 7 33 3 8 22222222222222222 6 4444444444 8 0
consensus : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAG-T-CAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGA-TGTGCCCCAGAATATATC--TC--GACTT--TCT-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------T---AT---GA---C-C-AGTTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGN--C-T--TCTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
Reference ( family-7570 ) : GTTAGCAAACCGGTTCCTAAACTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TCAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCNCCTACTCCAAGTTGGTCAGGACTGATGCAGTGGAG-T-CAAAATGAAGATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCGATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCGCCAA-GCTA-GAAAATATGGT-GCAACTC-CAATTCTAACTT-TTGGCCAGCCTCTCTAC-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CGTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT-----AGG--A---------T---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--G--TNT-GC-A---GGAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAANGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------GTACCTTGC-TTANGGCA-AAATCTT-----T-----TGGTGTCGAATTGCC-CGATAATGATTGTGCCCCAGAATATATC--TC--GACTT--TCT-TGTA-AC-ACC-AGTGACA-CAGAG--GCCCCTGA-TCATATCCCTGCTGAGTCC---GNAGACGTTTCTACAATCNAAC-G-GCAAGAAAATC-T-A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------T---AT---GA---C-C-AGTTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGN-------TCTTCTCTTAAGTGCTTCAAAAGCAGCAGCCCTCTGGCTTCAGTACT
gi|1 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAG-AACAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGAG--TCACGG--CCTGAAGACT-T-CAGCTCCAT-T-ATA-CTCA------GGTTAGGTG-G-GT---T-TCACAC-ACA-AATGAGCTTTTT----------A---------T---------G---------C--------A-------T--------TA-TGAG--AGTGTC-----AG--G--TAT-GC-A---GAAAGTTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCT--G-TAGCTCGAGCAA--CTCGT-GTCCA-TTTCCTAG-TTGAT-ACAACCCTTC------ATACCTTGC-TGATGGAA-AAATATT-----T-----TAGTGTCGAATTGCC-TGATAATGA-TGTACCCCAGAA---------------TT--TCT-TGTA-AC-ACC-AGTGACA-CAGAG--G-CCCTGA-TC--ATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATC---A-C-CTGTGCAA----G----CAAGCTGCAGCCTT---G------T---AT---GA---T-CAAATTGCT--AGAAGGGAGAT-GTTATTGCG--CAAGACGTTTTTAATCATCCTACCGTACAAACATCCTACCGTACTGGACAAACTTGCGGACGCA-AA-------TCTTCTCTTAAGTGCTTCAAAA-CAGCAGCCCTCTGGCTCCAGTACT
gi|10 : AAC-G-GCAGGATAAT--T-A-A-CGGCTCAA----G----CAAGCTGCAGCCTT---G------G---AT---GA---C-C-AGTTGC------------------AC---------GACGTTTCTAATCATCCTAC----------------TGTACTTGAGAAACTTGCGGGCACAAAA-------TCTTCTCTTAAGTGCTTCAAAA-CAGCAGTCCTCTGGCTTCAGTACT
gi|11 : --TCACAC--TGTGAAGACT-T-TAGCTCCAT-T-ATA-CTCG------GGTTAGGTG-G-GT---T-TCCCAC-ACA-AATAAGCTTTTT-----GGG--A---------T---------GTATCGGGCGC--------A-------T--------TA-TTAG--AGAATCA----GG--A--TG--GC-A---AGAGGTCTTAGAGA-CTGTAGA-TGCGCCAAATGTGGAGTT-AGT------CATA-TTCTT-AGTG-TAAAAGCA--G-AAGCTTGAGCAA--CCCTT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTCGTACATGTACCTTGT-TTGTGGCG-AAAACTA-----T-----TGGTtaaaaatgaaagttttcttgaaatctttcatcacagctgaatgaactggtaattggctacttcatatacaaacgctacacgcaatgcttccatattttgctgcagctgaacataatatgtatgcaaagtcagcatacatttatgtcacttcaaaaagatcatcctcatgtacacaacaagtttctggaagggtatcatgttctgagaagaagtgagaggtactggacgggtctctcctgtgatcttgctattgaacaggcattaatgagaagt
gi|13 : CAAT--TG-----TCGCTCATGAG--TCACAG--CGTGAAGTCT-T-CATTTCCAT-T-ATA-CTCT------GGTCAGGTG-A-GT---T-TTACAC-ACA-AATGAGCGTTTT-----GTG--A---------TGTATCGGGCG---------C--------A-------T--------TA-TGAG--AGttaactaaattac
gi|16 : ACATAAAGTACTGGATTCATCTACATCAAGTTTAG
gi|2 : TTAGCAAACCGGTTCCTAAACTGAATGTTTGATCGGCTGACCTGGTCACTACTGGGAAAATTGAATA--ACATTTATACAAACAACCACCTAAATCGTCATTGCAGATGCAATTCTCCAAGATTAGAGTAGAACAGAAAGTACTGGATTCATCTACATCAAGTTTAGATCTTCTTTCAAAGGT-GTATGAC-------------TACTCCAAGTTGGTCAGGACTGATGCAGTGGAG-T-CAAAATGGAGATTACCCTGGGAAGTCTGCGATCACCTTTCTGCCGATGATAGATATGAACGCAAGCGATATGTCGTGTATTTTTTCTACAAC-TGACGTTTGTTTGTCTCGCCAAGGCTATGAAAAATTGGTAGCACCTCTCAATTCTGACTTGTTATCCAGCC-CTCTGCAATGACAACGCGTTAACAAT--CA-----TC-----TG-GTTTCACAG--CGTGAAAACTGT-CATC-CTATAT-ATA-ACCATATCACAGTTAAGTGTG-GT---TATCACAC-ACACAATGAGCTTTGT-----A-G--A---------T---------G---------TATCGGGCGA-------T--------TA-TGAG--AGAGTC-----AG--G--ATT-GC-A---GGAAGTTTTAGAGA-CTGTATATTGCGCCAAATGC--AGTT-GGT------CATA-TTCTT-AGTG-GAAAAGCG--G-TAGCTCGAGCAAAGCTCGT-GCCCA--TTTCTAG-TTGAT-ACAGCCCTTC------ATA-CTTGCTTTATGGCA-AAAATGC-----T-----TGGTGTCGAAT-----------------TGTCCCAGATTATATC--TTCAGATTT--TTT-TGTA-AC-ACCTAGTGACA-CAGAG--GCCTCTGA-TCATATCCTTGCTGAATCC---ACAGACGTTTCTACAATCCAAC-G-GCAAGAAAATA---A-C-CTGCTCAA----G----CAAGCTGCAGCCTT---G------T---AT---GA---C-C-AGTTACT--AG-AGGAAGAT-GTTATTGTG--CAAGACGTTTGTAATCAT
gi|3 : GTTAACAAACCGGTTC-TAAGCTGAATGTTTCATCGGCTGACCTGGTCACTGCTGGGAAAATTGA-TAT-ACATTTCTACAAACAACCACCTAAATCGTCATTGCAGATACGATTTTCCAAAATTAGAATAGAACAGAAAGTACTAGATTCATCT---TTAAGTTTAGATCTTCTTTCAAAGGTTGTATGGCCTCTTCGATCACTTACTTCAAGTTCGCCAGGACTGATGCAGTGGAGAA-CAAATTGAAAATTACCCTGGGAAGTCTGCTATCACCTTTCTGCCAATGATAGATATGGACGCAAGCGATATGTCGTGTATTTTTTCTAC-AC-CGACGTTTG--TGTCTCACCAA-GCTA-GAAAATATGGT-GCAACAC-CAATTCTAACTT-TAGGCCAGCCTCTCTAT-ATGACAGCG-GTT-ACAAT--CG-----TCACTCATGA
gi|4 : attctgtccctttgtctagcttctgatttgtaccctttgttgtcagatattgaatcacttgaaaagaatccacaatacgtaaagtctctttttaaagattatcattagagaaaaggacccagggctgaatattgcatcgattagacagacaattaatatgcagatggcgaagccacgtttgcatcaccatttttcatcaaagtttcttaaagataagctgcattccttaggattttgtttctcattttcggagatacaacgttttaatacaaatgcagccatttcacaaggaacagacattccaggctattaaaatgggcaattccttcaattcattgccgacaatgtagaccacaatgtgcgcacacttggtgggtatggcaaatttcatggtatgagcataattgtcgactctacacctggtacaaagGTTAGCTAACCGGTTCCTAAACTGAATGTTTCATCGG--------------------AAAATTGA-TATTACATTTCTACAAGCAACCACCTAAATCGTCATTGCAGATGCGATTCACCAAGATTAGTATAGGACAGAAAGTAGTGGATCCATCT---TCGAGTTTAGATCTTCTATCAAAGATCGTATGGCCTCTTCGATTTCCTACTCCAAGTTGGTCAGGACTGATGCAGTCAAG-T-AAAAATAAATATAACCCTGGGAAGTCTGCCATCACCTTTCTGCCGATGATAGATATGTACGCATGCGATATGTCATCTGTCTTCTCTAC-ACTTGACGTTTG--TGTCTCGCCAA-GCTA-GGAAATATCGT-ACAACTC-CAATTCTAACCT-TTGACCAGCCTTTCTAC-ATGAAAGCA-GTT-ACAAT--CG-----CCACTCATGAG--
gi|5 : tctgtcccttcgtctagcttctgatttgtacatgtacccattgtcgtcagatattgagtcacttgaaaatattcttcagtacgtccgtgaatgtcttcaaacctttttaaaaaatctccttaaaaagatccagggttgaagattgtattgattggacagacaattatgctgatggcgaagcacgttgcaccactacaaataggtctaggagtgcagctccatcaccattttacatcaaagtttctaatagacacgctgtattccttaggattttagtccccacatacagccatttctcaagggacagacattcctggctataaaaatttcctcaatttggcgcggacaatatgggtcaaaatgtacacacacttgatgggtatgatacattccctggtatgggtataattgtcggctctacacctggtacaaagGTTAGCAAACCGGTTCCTAAACTGATTGTTTCATCGGCTGACCTGGTCACTGCTGGCAAAATTGA-TAT-ACATTTCTATAAACAACCACATAAATCGTCATTGCAGATGCGATTCTCCAAGATTAGAATAGAACAGAAAGTACTGGATTCATCT---TTAAGTTTAGATATTCTTTCAATGGTTGTATGGCCTCTTCGATCTCCTACTCCAAGTTGGTCAGGACTAATGCAGTGGAG-T-CAAAATGGAGATTA
gi|6 : tcccttcgtctagcttctgatttgtaccctttgtcgtcaaatattgaatctcttgaaaagaatctacaatacgtcgctgaaagtcttcaaacctttttaaatattctcattagagaaaaggacccaggattgaagattgcatcgattggacagacaattatggagatggcgaagccacgtttacataatgcaccactcatcaccatttttcttcaaatttcttatgatatggctgatcccttaggattttgttcctcataatcggagaaaaatgggcaattccttcaatttgttaccgacaacgtagatcacaatgtgcgcacacttgatgggtatggtacatttcatggtaagggcataattgtcggctctaaacctggtacaaagAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-T-ATG-CTCA------GGT-AGGTG-T-GTGTTT-TCCAAC-ACA-AATGAGCTTTTT-----AGGGAA---------T---------G---------T--------A-------TGAGGCGATTAATGGG--AGAGTCGGAAGAGATG--TTT-GC-GCATGAAAGCTT-AGAGAACTGTAT--TGCGGCAAATGC--A-TT-AGTTTTGA-CCTAGTCCTT-GATGTGGAACGCG--GGTAG-TCG-GCAA--CTCGTTGCCCAGTTTTCTAGATTGAT-ACAGCCCT--------G-ACCTTGC-T-AAGGCACAAATTCT-----TAAAAATTGTGTTGAATTGCCTCGATTATGATTGT---CCAGAATATATT--TC--GACTTATTCTCTGTA-AC-AAC-CGTGACA-CAGAAACGCCCCTGAATAATA--CCTGCTGAGTCC---GAAAGAGTTTTTACAAT-GAAC-AAGCAAGAAAATC-TTA-TACTGCTCA-----GTATCCAAGCTGCAGCCTT---GACTTGAT---AT---GAGGACAC-GCTTGCTTTAG-AGGGAGAT-GATACTGCGGGCAAGACGTTTCTA-TCATCCTAC----------------CGTACTG-AGAAACTTGAGAACGCATGTGCCTTCTTCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGGCTTCAGTATT
gi|7 : ctcttaactAGCG-GTT-ACAATGTCGGGTGGTCATCAATGAAA-TCCAGGTACATGG-GACT-TTCAGCTCCAT-TTATGGCTCA------G--TAGGTG-GTGT---TACCACACGACA-A-TGAGCTTTTTTAGGGAGG--A---------T---------G---------T--------AAGGGCGAT--------TA-TGAGGAAGAGTCG----AA--GAGTATTGCGA---GAAAGCTT-AGAGAACTGTATA-TGCGC--AATGC--AGTTAGGTTTCGAACCTAGTCCTTGAGTG-GAAACGCGCGG-TAGCTCG-GCAA--CTCTT-GCCCAATTTTCTA--TTGATTACAGCCCTTC------AGAC-TTGC-TTAAGGCC-AAATCTTAAAAAT-----TG-TGTTGA-TTGCT-CGATATTGATTGT-TCCCAGAATATATTGTTC--GACTT--TCT-TGTACAC-AC---GTGACAACAGAAC-GCCCCTGA-T-ATATCCCTGTGGAGTCCTGAAAAGA-GTTT-TACA-TCGAACAG-GCAAGAAAATTAT-AAC-CTACTCAGTATCG----CAA-CTGCAGCCTTCGGG------TTTGATAGAGA---CAC-AGTTGCTT-AG-AGGGAGATCGATACTGCGGTCAAGACGTTTCTA-TCATCC-AC-----------------GTACTGGAGAAACTTGAGAA-GCATGTCTCCTT-TCTTCTCTTAAGTGCTTCAAAAGCAGCAACCTTCTGG-TTCAGTATT
gi|8 : ctcttaactT-----AGG--G---------C---------G---------C--------A-------T--------TA-TGAG--AGAGTCG----AG--A--T-T-GC-A---GAAAGCTTTAGAGA-CTGTATA-TGCGCCAAATGC--AGTT-AGT------CATA-TTCTT-AGTG-GAAACGCG--G-TAGCTCGAGCAA--CTCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCCCTTC------ATACCTTGC-TTAAGGCA-AAATCTTAAAA-T-----TGGTGTTGAATTGCC-TGATAATGA-TGTGCCCCAGAATATATC--TTCAGACTT--TCT-TGTA-ACAACC-AGTGACA-CAGAC--GCCCCTGA-TCATATCCCTGCTGAGTCC---GAAGACGTTTCTACAATCGAAC-G-GCAAGAAAATC---A-C-CTGCTCAA----T----CAAGCTGCAGCCTT---G------T---AT---GA---C-C-AGTTGCT--AG-AGGGAGAT-GATACTGCG--CAAGACGTTTCTAATCATCCTAC----------------CGTACTGGAGAAACTTGAGAACGCATGC-------TCTTCTCTTAAGTGCTTC-AAACCAGCAGCCCTCTGGCTTCAGTACT
gi|9 : ggatgtaTTTTTTTTAA-AC-TGACGTTTG--TGTCTCGCCAA-GCTA-GAACATATGGT-ACAACTC-CAATTCTAACTT-TTGACCAGCCTCTCTAC-ATGAAAGCG-GTT-ACAAT--TG-----TCACTCATGAG--TCACAG--CGTGAATACT-T-CAGGTCTAT-T-ATA-CTCA------AGTTAGGTG-G-GT---T-GCACAC-ACA-AATGGGCTTTTT-----AGG--ATGTTTCCGGT---------G---------C--------A-------T--------TA-TGAG--AGAATCG----GG--A--T-T-GC-A---GGAAGTTTTAGAGA-CTGTATA-TGTGCCAAATGC--AGTT-GGT------CATA-CTCTA-AGTG-GAAA-GTG--G-TAGCTCGAGCAA--TCCGT-GCCCA-TTTTCTAG-TTGAT-ACAGCTCTTC------GTACCTTGT-TTGTGGCA-AAATCTG-----T-----TGGTGTCAAATTGCC-TGATAATGA-TGTGCCCCA---------------------------GTG-AC-AC-----------AGAG--GCCCCTGC-TCATATCCTTACTGA-TCC---GCGGACGTTTCTACAATCCAAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACGTTTTAAGACAGGTACAGCCATTTTACAAGGAACAGAAATTCCCTGATTCCAGGCTATGAAAATGGGCAATTCCTTCAATTCGTCACTGACAATGTGGATCACAATGTACACACACTTGATGGTATG
Unaligned ( gi|14 ): GCCTTGTGGTTCCCAGCGGTTAACTATTAGCCTAGCTTTTGAAATGAACACGAGACCTAAATGTTTTAAGTTATTGTGTACTTGAAATATTGACGAGCACCAAAATCTTCT
Unaligned ( gi|15 ): CTGTCCCTTCGTCTAGCTTCTGATTTATCCCCTTTGTCGTCAAATGTTGAGTCACTTGAAAAGAATATACAATACGTCCCTGAAAGTCTTCAAAC