lowQualScore : 11111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 88888888888888888888888888888888888888888 1 333333 1 1 2 2 2 22 2 1 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 11 3333 1 3333 888888888 2 2 11 2 2 4 4 33 666666666 5555555555555555555 1 555555555555 000000000000000000000000 1 1 22 00000000000000000000000000000000000000000000000000000000000000000 1 444444444 11 4444444 1
lowQualScore : 66 8 0 55555555555555555555555555555555555555555 3 0 3 7 888888 3 2 5 0 7 2 4 0 4 66 3 3 0 444 3 3 5 0 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444 3 11 3 2222 8 6 6 1 5 1111 7 000000000 6 0 0 6 99 77 0 4 0 0 6 0 00 0 1 000000000 1 7 7777777777777777777 3 000000000000 0 222222222222222222222222 1 0 2 66 3 0 8 44 0 2 33 1 88 2 6 22222222222222222222222222222222222222222222222222222222222222222 3 5 2 3 3 777777777 55 3333333 3
lowQualScore : .. . . ......................................... . . . . ...... . . . . . . . . . .. . . . ... . . . . . ...................................................................................................................................................................................... ... . .. . .... . . . . . .... . ......... . . . . .. .. . . . . . . .. . . ......... . . ................... . ............ . ........................ . . . .. . . . .. . . .. . .. . . ................................................................. . . . . . ......... .. ....... .
lowQualScore : 22 8 0 88888888888888888888888888888888888888888 2 0 2 3 333333 3 5 0 0 5 5 0 0 0 00 0 0 0 000 0 0 5 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 000 2 00 6 2222 0 2 0 4 0 2222 3 555555555 0 0 0 0 55 00 0 0 0 0 0 0 00 7 0 000000000 0 3 7777777777777777777 3 333333333333 7 000000000000000000000000 2 0 5 00 2 2 8 55 0 5 55 2 22 5 0 00000000000000000000000000000000000000000000000000000000000000000 2 0 2 2 2 222222222 77 3333333 3
consensus : GTGGNTTATGATGCTGTGGAAA-C------------CT-----------GAAGTTTATGTTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCATATAAACAATNCANTCATGCGNCATTCTGAACTTCGNAATGTCNGTAAAACGATCCGNCTTNTCATATCTNTCATCTTGATGAACAGAANTATATATTATATGTATGTATATTTCAGGAATTTTTAGGACATATTCTAAATGTCCTNTCCANT-----GTAGANTATTGTGCACGTTTAAACN-AAAAAA-GGNCNACGTG-TTCAA-CT-TGTACACACAAGTTTAATGGTGGAGATTTCAGAC-----------GCG-------------ATTAAT---TCTACACG--ANGAGTTAG-GC-ANATTCTGTTTTACACGTTTAGCTGCAACAC---AATTTATTTTGGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGNTCNNCTGCTTTGAATACTCGGCTNCGGGTCGCACGTG-ACATAGTGCAGCTGACGTTCAGCCCTAATTTTGTAAAGTA--ATGA-T-CGACCACGCAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GA-ATATTT-CTAAAACC-TC-GT--TTCGGCATAATTCA-A-------A-AT--------GAAAA-CTCAATCGAAAAACATTACCCCAAATATTG-AAAGCCGAGTTAAATTC-ACAGAGAGNACAGCAA-----------------T-------G-ATATCAGT---TTTTA---AAAAA-G-T-T---TAAAAATATATTCGAGATAATTTATTGTGGTGGAAAGACTAT---AT----TTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( gi|2 ) : GTGATTTATGATGCTGTGGAAA-C------------CT-----------GAA-------------TTCTTTATTACTT-GATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AATT-T---TT-----T-------TTTTAGG-ATTT------CATATTCTGAAT-TCCTTTCC-TT-----ATAGACTATT-------TTTA--CC-AAAAAA-GAATAACGTG-TTCAA-CTGTGTACATACAAGTTTAATGATGGAGATT---GAT-----------GCA-------------ATTAAT---TCTACACG--AAGAGT--A-GC-AAATTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTGCACATAGTGCAACTGA-GTTCACGCCTAATTTTGTGAAATATTATGA-T-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTT-CTAACATCATTAAT--TTTGGCATGAT------------A-AT--------GAAAA-CTCAATCAAAAAACATTACCCCAAATATTG-AAAGCCGAGTTAAATTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTA---AAAAACG-T-T---TATAGATATATTCAAAATAATTTATTGTGGTGGAAAGACTAT---A-----TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAAC------------CTTTGAATTTGTTGAAG------------TTCTTTAT-ACTT-GATAGGTTA-TGATTATATTAT-AGATCAT-TAAAC-ATGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATC-TGATGAACA-AAAT-TATATT-----TATGTATATTTTAGGAATTTTTAGGACATATTCTGAAT-TCC-TTCC-TT-----ATAGACTA---------TTTA--CCAAAAAAA-GAAAAACGTGTTTCAACCTTTGTACATACAAG-TTAATGATGGAGATT---GAT-----------GCA-------------ATTAAT---T-TACACGGAAGGGGT--AGGCAAAATTCTG---TACACGTTTAGCTG-AATA----A
gi|3 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagGTGGATTAAGATGTTTTGGAAA-C------------CT-----------GAAATTTATGTTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGTAAA-CGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAATTATA--TTATATGT-------TTTCAGG-ATTT------CATATTCTAAAC-TCCTTTGC-TTTTTAGATAAACTATT-------TTAA--CT-AAAGAATGAATGATATG-TTCAA-CTGTGT--ATCGAAGATTAATGGTGAAGATT---GATAAAGTGAATCGGCGGAAAACCAATGTCATTAAA---TCTACACG--ACAAGT--A-GC-ACATTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTTttactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|15 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtGTGATTTATGATGCTGTGGAAA-C------------CT-----------GAATTTTATGTTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-
gi|8 : tGTGGTTTATGATCTTGTGGAAA-CTTTTTGTGTTAATT-----------GAAG------------TTCATTATTACTT-TA-AGGTt
gi|11 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtTTTTAAATGTCCTGTCCAGT-----GTAGAGTATTGTGCACGTTTAAACG-AAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATTTCAGAC-----------G----------------TTAAT---TCTACACG--AAGAGTTAG-GC-ATATTCTGTTTTACACGTTAAGCattacatgcat
gi|10 : TTTTAAATGTCCTGTCCAGT-----GTAGAGTATTGTGCACGTTTAAACG-AAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATTTCAGAC-----------G----------------TTAAT---TCTACACG--AAGAGTTAG-GC-ATATTCTGTTTTACACGTTAAGCaa
gi|7 : -----------GCG-------------ATTAATAAATTTACACG--ACGTGT--T-GC-AAAATTCGATTTACACGTTTAGCTGaa
gi|1 : CAATAC---AATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTGACGTTCAGCCCTAATTTTGTGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAAATATTTTCTAACCCTATT-----TTCGGCATGAT------------A-TT--------GAAAAACTCAAT-AAAAAACATTATCC-AAATATTGGAAAGCCGAGTTAAATTC--CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTA---AACAA-G-T-T---TAAAAATATATT-AAGATAA-TTATTGTGGTGG-AAGACTATATAA-----TTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|13 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaCAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGCTT-AAATACTCGGCTTCGG-TCGCACGTGtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|4 : acaataataaactgacttggaTTTTGTAAAGTA-----A---CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTGACATATTT-CTAAAATCTTTTGT--CTTGACATAATTCACA-------A-ATCTACGCTTGAGAA-CTCAATCGAAAAA--TT-CAGGAAAC-TTG-TGA-CCA--TTAAACTTTACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGAAACAATAT---TAT---TAT-TTCGAATTAATTCATTGTGATGGAAAGATTAT---ATA---TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|7 : cacacggacatatacattgtaccagttctttgcTTTAATAAAGTA--ATGA-T-CGTCCACGCTATCACCTGTACATCATTTTTtt
gi|6 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggTTTTTTAAATTAT----GAAA-----TGTTT-GTAAAACC--CAATGTTTTGGCATAATTCAAATATCTACACAT--------GATAA-GTCAATCGAAATTCTTTACTCCAGAAATTG-AAAGCCGAATTCAAATCAACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAGT---T---G---AAAAA-G-T-TCTTTAAAAATGTATTCGAGATAATTTATTGTGGTGGAAATATTAT---A-----TTTCTAAA
gi|9 : g------------A-AT--------GAAAA-CTCAATCAAAAAACATTATCCCAAATATTG-AAAGCCGAGTTAAATTC--CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTA---AAAAA-G-T-T---TAAAAATATATT-AAGATAATTTATTGTGGTGGAAAGACTAT---ATTAATTTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CACCATGCAAACAGTGTGCCATGGTGTAAAATGGTCATATTACACCACGCACAGTGTGCCATGGTGTACGTGTATTCTGAATACACAAGAAGTTTACTGGGAGCCACAATGCCTAGAGTTAGTACCTGATGCCCTCAGTGTTGCACCATGTCGGTATCCATGCTACGTGTCTGTATAGGTGTCATATAATGTTTTAATTTCATATTGTAGGTTTATGATGTTGAAACTTGGATTTTGCGTTGAATGATGAATTACAAAAATTTTGAAGAAGATATTATA
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 3333333333333333 222222 2 2 11 1 3333333333333333333333 22222 222222222 2 11 33333333 22222 3333333 88888888888888888888888888888888888888888 11 111 11 3333 222222222 2 2 1 1 1111 11 1 333333333 111 555555555555555 444444444 7777777777777777777777777 11 7777777777777777777777777 3333 22222 1111 1 33333333 3333333 1
lowQualScore : 1 5 8 4444444444444444 0 8 0 0 0 333333 8 1 6 3 7 1 1 3 11 11 1 1 7 7 888 1 1 7 2 7777777777777777777777 33333 444444444 0 8 66 1 1 0 55555555 777 1 8 333 22222 8888888 0 00000000000000000000000000000000000000000 77 111 1 6 1 44 6 1 3 2 6666 3 999999999 3 3 88 22 7 7 0 1 6 6 3 0 6 2 7777 4 33 0 0 222222222 2 3 777 000000000000000 0 666666666 2 3333333333333333333333333 8 6 555 0 8 8 8 88 1 3333333333333333333333333 8 0 4444 8 22222 8 7777 0 0 0 77777777 77 2222222 0
lowQualScore : . . . ................ . . . . . ...... . . . . . . . . .. .. . . . . ... . . . . ...................... ..... ......... . . .. . . . ........ ... . . ... ..... ....... . ......................................... .. ... . . . .. . . . . .... . ......... . . .. .. . . . . . . . . . . .... . .. . . ......... . . ... ............... . ......... . ......................... . . ... . . . . .. . ......................... . . .... . ..... . .... . . . ........ .. ....... .
lowQualScore : 0 0 0 4444444444444444 8 0 8 8 8 000000 0 0 7 7 3 0 0 7 77 00 0 0 3 3 333 0 0 3 0 3333333333333333333333 00000 333333333 0 8 88 4 0 8 66666666 222 0 0 444 44444 8888888 8 00000000000000000000000000000000000000000 22 777 0 7 0 55 7 0 5 5 5555 2 000000000 3 7 33 00 3 3 7 0 7 7 2 0 7 0 7777 2 88 8 0 000000000 0 2 555 222222222222222 2 888888888 0 2222222222222222222222222 0 0 444 8 0 0 0 66 0 0000000000000000000000000 0 8 4444 0 00000 0 0000 0 8 8 66666666 22 5555555 0
consensus : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTTATG----TTGAAGTTCTTTATTAC-TTGATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAAACGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT------TTATAT-T-------TTTCAGG-ATTTTTAGGA---CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAAC--TGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-G-A-A-TATTTCTAAAACC--T--N--GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTC-ACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATA-TA----TTCGAGATAATTTATTGTGGTGGAAAGACTAT----ATA-TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( family-7544 ) : GTGGNTTATGATGCTGTGGAAA-CCT--GAAGTTTATG----TTGAAGTTCTTTATTAC-TTGATAGGTTAATGAT------AT-ANATCATATAAACAATNCANTCATGCGNCATTCTGAACTTCGNAATGTCNGTAAAACGATCCGNCTTNTCATATCTNTCATCTTGATGAACAGAANTATATATTATATGTATGTATATTTCAGGAATTTTTAGGA---CATATTCTAAATGTCCTNTCCANTGTAGANTATTGTGCAC-GTTTAAACNAAAAAA-GGNCNACGTG-TTCAAC--T-TGTACACACAAGTTTAATGGTGGAGATT-----------TCAG----------ACGCGATTAAT---TCTACAC-GANGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGNTCNNCTGCTTTGAATACTCGGCTNCGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TAAAGTA--ATG-AT-CGACCACGCAATCACCTGTGCATCATTTTTT---TTAT----GAAA-G-A-A-TATTTCTAAAACC--T--C--GTTTCGGCATAATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTC-ACAGAGAGNACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATA-TA----TTCGAGATAATTTATTGTGGTGGAAAGACTAT----AT--TTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAACCTTTGAA--TT-TG----TTGAAGTTCTTTAT-AC-TTGATAGGTTA-TGATTATATTAT-AGATCAT-TAAACA-TGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATCT-GATGAACAAAA-------TTATATTTATGTATATTTTAGGAATTTTTAGGA---CATATTCTGAAT-TCCT-TCC-TTATAGACTATT-TAC----------CAAAAAAA-GAAAAACGTGTTTCAACCTT-TGTACATACAAG-TTAATGATGGAGATT--------------G----------ATGCAATTAAT---T-TACACGGAAGGGGTAGGCAAAATTCTG---TACACGTTTAGCTG
gi|1 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagCAATA---CAATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAA-A-TATTTTCTAACCC--T--A--TTTTCGGCATGAT-----A---------TT--------GAAAAACTCAAT-AAAAAACATTA-TCCAAATATTGGAAAGCCGAGTT-AAA-TTC--CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTAAA-CAA-G---TTTAAAAATA-TA----TT-AAGATAA-TTATTGTGGTGG-AAGACTAT----ATAATTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|10 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaTTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA--------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|11 : TTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA--------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCaa
gi|13 : CAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGC-TTAAATACTCGGCTTC-GGTCGCACGTG-aa
gi|15 : acaataataaactgacttggaGTGATTTATGATGCTGTGGAAA-CCT--GAATTTTATG----TTGAAGTTCTTTATTAC-TTGATAGGTTAATGAT------AT-
gi|2 : tGTGATTTATGATGCTGTGGAAA-CCT--GAA-----------------TTCTTTATTAC-TTGATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AATT--------------------TTT------TTTTTAGGATTTCATATTCTGAAT-TCCTTTCC-TTATAGACTATT--------TTTA--CCAAAAAA-GAATAACGTG-TTCAAC--TGTGTACATACAAGTTTAATGATGGAGATT--------------G----------ATGCAATTAAT---TCTACAC-GAAGAGT--AGC-AAATTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTGCACATAGTGCAACTG-A-GTTCACGCCT--AATTTTG-TGAAATATTATG-AT-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-G-A-AATATTTCTAACATCATT--A--ATTTTGGCATGAT-----A---------AT--------G-AAAACTCAATCAAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTAAA-AAACG---TTTATAGATA-TA----TTCAAAATAATTTATTGTGGTGGAAAGACTAT----A---TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAGt
gi|3 : GTGGATTAAGATGTTTTGGAAA-CCT--GAAATTTATG----TTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGT-AAACGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAAT--TATATTATATGT-------TTTCAGG-ATTT---------CATATTCTAAAC-TCCTTTGCTTTTTAGATAA------ACTATTTTAACTAAAGAATGAATGATATG-TTCAAC--TGTGTAT-CG-AAGATTAATGGTGAAGATTGATAAAGTGAATCGGCGGAAAACCAATGTCATTAAA---TCTACAC-GACAAGT--AGC-ACATTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTT
gi|4 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtCACACG-G-ACATA-TACA-TTGTAC---CAGTTCTTTGCTTTTG-TAAAGTA--A------CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTG-ACA-TATTTCTAAAATC--T--TTTGTCTTGACATAATTCACAA---------ATCTACGCTTG-AGAACTCAATCGAAAA--ATT-CAGGAAAC-TT-GTGA-CC--ATT-AAACTTT-ACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGA--------AACAATATTATTATTTCGAATTAATTCATTGTGATGGAAAGATTAT----ATA-TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|6 : TTTTTTAAATTAT----GAAA-------TGTTTGTAAAACC--CAAT--GTTTTGGCATAATTCA-AATATCTACACAT--------G-ATAAGTCAATCGAAATTCTTTACTCCAGAAATT-GAAAGCCGAATTCAAA-TCA-ACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAG------TTGAA-AAA-GTTCTTTAAAAATG-TA----TTCGAGATAATTTATTGTGGTGGAAATATTAT----A---TTTCTAAAtt
gi|7 : gGCGATTAATAAATTTACAC-GACGTGTT--GC-AAAATTCGATTTACACGTTTAGCTG
gi|7 : AGTCTT--AGGTTTAATAAAGTA--ATG-AT-CGTCCACGCTATCACCTGTACATCATTTTTgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|8 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaGTGGTTTATGATCTTGTGGAAA-CTT------TTTGTGTTAATTGAAGTTCATTATTAC-TTTA-AGGT--ATTAC------AT-GCAT
gi|9 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtA---------AT--------G-AAAACTCAATCAAAAAACATTATCCCAAATATT-GAAAGCCGAGTT-AAA-TTC--CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTAAA-AAA-G---TTTAAAAATA-TA----TT-AAGATAATTTATTGTGGTGGAAAGACTATATTAAT--TTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACCATGCAAACAGTGTGCCATGGTGTAAAATGGTCATATTACACCACGCACAGTGTGCCATGGTGTACGTGTATTCTGAATACACAAGAAGTTTACTGGGAGCCACAATGCCTAGAGTTAGTACCTGATGCCCTCAGTGTTGCACCATGTCGGTATCCATGCTACGTGTCTGTATAGGTGTCATATAATGTTTTAATTTCATATTGTAGGTTTATGATGTTGAAACTTGGATTTTGCGTTGAATGATGAATTACAAAAATTTTGAAGAAGATATTATA
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG
Alignments
lowQualScore : 11 333333333 222222 1 1 11 1 666666666666666666666 1 555555 2 11 33333333 11 22222 222222 222222222222 8888888888888888888888888 11 111 11 3333 222222222 1 1 2 2 1 1 1111 11 1 444444444 111 5555555555555 3333333 7777777777777777777777777 111 7777777777777777777777777 3333 22222 1111 11 11 3333333 1
lowQualScore : 1 5 8 11 8 000000000 0 8 0 0 0 333333 8 1 6 3 7 3 11 7 7 7 2 777777777777777777777 0 3 888888 0 8 66 1 1 0 55555555 11 3 8 333 22222 444444 0 777777777777 0000000000000000000000000 77 111 1 6 44 6 1 3 2 6666 3 777777777 3 3 7 3 3 3 0 6 2 7777 0 33 0 0 000000000 3 777 3333333333333 0 7777777 3333333333333333333333333 8 1 555 0 8 0 8 8 666 3333333333333333333333333 8 0 4444 8 22222 7777 88 0 0 0 8 8 8 11 44 2222222 0
lowQualScore : . . . .. . ......... . . . . . ...... . . . . . . .. . . . . ..................... . . ...... . . .. . . . ........ .. . . ... ..... ...... . ............ ......................... .. ... . . .. . . . . .... . ......... . . . . . . . . . .... . .. . . ......... . ... ............. . ....... ......................... . . ... . . . . . ... ......................... . . .... . ..... .... .. . . . . . . .. .. ....... .
lowQualScore : 4 0 0 00 0 000000000 8 0 8 8 8 000000 0 0 7 3 3 3 00 3 3 3 0 000000000000000000000 7 3 000000 0 8 44 4 0 8 66666666 44 2 0 000 44444 888888 8 000000000000 0000000000000000000000000 22 777 0 7 55 7 0 5 5 5555 2 000000000 3 3 3 7 3 2 0 7 0 7777 8 88 8 0 000000000 2 555 2222222222222 2 2222222 2222222222222222222222222 0 0 444 8 0 8 0 0 888 0000000000000000000000000 0 8 4444 0 00000 0000 00 8 8 8 0 0 0 00 22 5555555 0
consensus : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAAACGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGC-TTGAATACTCGGTTAC-GGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAA-ATATTTCTAAAACC--TA-TGTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( family-7544 ) : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAAACGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTCAGG-ATTTTTAGGACATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-G-A-ATATTTCTAAAACC--TN--GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAACCTTTGAA-TTT---G----TTGAAGTTCTTTAT-ACTT-GATAGGTTA-TGATTATATTAT-AGATCAT-TAAACA-TGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATC-TGATGAACAAAA-----TTATAT-TTATGTATATTTTAGGAATTTTTAGGACATATTCTGAAT-TCCT-TCC-TTATAGACTATT-TAC----------CAAAAAAA-GAAAAACGTGTTTCAACCTTTGTACATACAAG-TTAATGATGGAGATT--------------G----------ATGCAATTAAT---T-TACACGGAAGGGGTAGGCAAAATTCTG---TACACGTTTAGCTG
gi|1 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagCAATA---CAATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAA-ATATTTTCTAACCC--TA--TTTTCGGCATGAT-----A---------TT--------GAAAAACTCAAT-AAAAAACATTA-TCCAAATATTGGAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTAAA-CAA-G---TTTAAAAATAT----ATT--AAGATAA-TTATTGTGGTGG-AAGACTA-TA-TAA--TTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|10 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaTTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|11 : TTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCaa
gi|13 : CAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGC-TTAAATACTCGGCTTC-GGTCGCACGTG-aa
gi|15 : acaataataaactgacttggaGTGATTTATGATGCTGTGGAAA-CCT--GAA-TTTTATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-
gi|2 : tGTGATTTATGATGCTGTGGAAA-CCT--GAA-TT-----------------CTTTATTACTT-GATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGT-AAACGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AAT----TT-T-T-T--------TTTTAGG-ATTT------CATATTCTGAAT-TCCTTTCC-TTATAGACTATT--------TTT--ACCAAAAAA-GAATAACGTG-TTCAA-CTGTGTACATACAAGTTTAATGATGGAGATT--------------G----------ATGCAATTAAT---TCTACAC-GAAGAGT--AGC-AAATTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGC-TTGAATACTCGGTTAC-GGTCGCACGTGCACATAGTGCAACTG-A-GTTCACGCCT--AATTTTG-TGAAATATTATG-AT-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-GAA-ATATTTCTAACATCATTA--ATTTTGGCATGAT-----A---------AT--------G-AAAACTCAATCAAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTAAA-AAACG---TTTATAGATAT----ATT-CAAAATAATTTATTGTGGTGGAAAGAC---TA-T-A--TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAGt
gi|3 : GTGGATTAAGATGTTTTGGAAA-CCT--GAAATTT-ATG----TTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGTAAA-CGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAATTATATTATATGT--------TTTCAGG-ATTT------CATATTCTAAAC-TCCTTTGCTTTTTAGATAA------ACTATTTTAACTAAAGAATGAATGATATG-TTCAA-CTGTGTAT-CG-AAGATTAATGGTGAAGATTGATAAAGTGAATCGGCGGAAAACCAATGTCATTAAA---TCTACAC-GACAAGT--AGC-ACATTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTT
gi|4 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtCACACG-G-ACATA-TACA-TTGTAC---CAGTTCTTTGCTTTTG-TAAAGTA------A--CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTG-ACATATTTCTAAAATC--TTTTGTCTTGACATAATTCACAA---------ATCTACGCTTG-AGAACTCAATCGAAAAA--TT-CAGGAAAC-TT-GTGA-CCA--TT-AAACTT-TACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGA--------AACAATATTATTATTTCGAATTAATTCATTGTGATGGAAAGATTA-TA-T-A--TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|6 : TTTTTTAAATTAT----GAAA------TGTTTGTAAAACC--CAATGTTTTGGCATAATTCA-AATATCTACACAT--------G-ATAAGTCAATCGAAATTCTTTACTCCAGAAATT-GAAAGCCGAATTCAAA-TC-AACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAG------TTGAA-AAA-GTTCTTTAAAAATGT----ATT-CGAGATAATTTATTGTGGTGGAAA---TATTA-T-A--TTTCTAAAtt
gi|7 : gGCGATTAATAAATTTACAC-GACGTGTT--GC-AAAATTCGATTTACACGTTTAGCTG
gi|7 : AGTCTT--AGGTTTAATAAAGTA--ATG-AT-CGTCCACGCTATCACCTGTACATCATTTTTgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|8 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaGTGGTTTATGATCTTGTGGAAA-CTT------TTT-GTGTTAATTGAAGTTCATTATTACTT-TA-AGGT--ATTAC------AT-GCAT
gi|9 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtA---------AT--------G-AAAACTCAATCAAAAAACATTATCCCAAATATT-GAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTAAA-AAA-G---TTTAAAAATAT----ATT--AAGATAATTTATTGTGGTGGAAAGACTA-TATT-AATTTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACCATGCAAACAGTGTGCCATGGTGTAAAATGGTCATATTACACCACGCACAGTGTGCCATGGTGTACGTGTATTCTGAATACACAAGAAGTTTACTGGGAGCCACAATGCCTAGAGTTAGTACCTGATGCCCTCAGTGTTGCACCATGTCGGTATCCATGCTACGTGTCTGTATAGGTGTCATATAATGTTTTAATTTCATATTGTAGGTTTATGATGTTGAAACTTGGATTTTGCGTTGAATGATGAATTACAAAAATTTTGAAGAAGATATTATA
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG
Alignments
lowQualScore : 11 333333333 222222 1 1 11 2 1 666666666666666666666 1 333333 2 11 33333333 22222 222222 222222222222 8888888888888888888888888 11 111 11 3333 222222222 1 1 1 1 1 1 1111 11 1 444444444 111 3333 11 3333333 7777777777777777777777777 111 7777777777777777777777777 3333 22222 1111 11 11 3333333 1
lowQualScore : 1 5 8 11 8 000000000 0 8 0 0 0 333333 8 1 6 3 7 3 11 3 7 2 777777777777777777777 3 888888 0 8 66 1 1 0 55555555 777 3 8 333 22222 444444 0 777777777777 0000000000000000000000000 77 111 1 6 44 6 1 3 2 6666 3 777777777 3 3 7 3 3 3 0 6 2 7777 0 33 0 0 000000000 3 777 1111 22 3 0 5555555 3333333333333333333333333 8 1 555 0 8 0 8 8 666 3333333333333333333333333 8 0 4444 8 22222 7777 88 0 0 0 8 8 8 11 44 2222222 0
lowQualScore : . . . .. . ......... . . . . . ...... . . . . . . .. . . . ..................... . ...... . . .. . . . ........ ... . . ... ..... ...... . ............ ......................... .. ... . . .. . . . . .... . ......... . . . . . . . . . .... . .. . . ......... . ... .... .. . . ....... ......................... . . ... . . . . . ... ......................... . . .... . ..... .... .. . . . . . . .. .. ....... .
lowQualScore : 4 0 0 00 0 000000000 8 0 8 8 8 000000 0 0 7 3 3 3 00 7 3 0 000000000000000000000 3 333333 0 8 44 4 0 8 66666666 222 2 0 000 44444 888888 8 000000000000 0000000000000000000000000 22 777 0 7 55 7 0 5 5 5555 2 000000000 3 3 3 3 3 2 0 7 0 7777 8 88 8 0 000000000 2 555 2222 55 0 2 8888888 2222222222222222222222222 0 0 444 8 0 8 0 0 888 0000000000000000000000000 0 8 4444 0 00000 0000 00 8 8 8 0 0 0 00 22 5555555 0
consensus : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTA-TT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( family-7544 ) : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAAACGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTA-T--GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAACCTTTGAA-TTT---G----TTGAAGTTCTTTAT-ACTT-GATAGGTTA-TGATTATATTAT-AGATCAT-TAAACA-TGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATC-TGATGAACAAAA-----TTATAT-TTATGTATATTTTAGGAATTTTTAGGACATATTCTGAAT-TCCT-TCC-TTATAGACTATT-TAC----------CAAAAAAA-GAAAAACGTGTTTCAACCTTTGTACATACAAG-TTAATGATGGAGATT--------------G----------ATGCAATTAAT---T-TACACGGAAGGGGTAGGCAAAATTCTG---TACACGTTTAGCTG
gi|1 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagCAATA---CAATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAAATATTTTCTAACCCTA-T---TTTCGGCATGAT-----A---------TT--------GAAAAACTCAAT-AAAAAACATTA-TCCAAATATTGGAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTAAA-CAA-G---TTTAAAAATAT----ATT--AAGATAA-TTATTGTGGTGG-AAGACTA-TA-TAA--TTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|10 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaTTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|11 : TTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCaa
gi|13 : CAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGCTT-AAATACTCGGCTTCGG-TCGCACGTG-aa
gi|15 : acaataataaactgacttggaGTGATTTATGATGCTGTGGAAA-CCT--GAA-TTTTATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-
gi|2 : tGTGATTTATGATGCTGTGGAAA-CCT--GAA-TT-----------------CTTTATTACTT-GATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AAT----TT-T-T-T--------TTTTAGG-ATTT------CATATTCTGAAT-TCCTTTCC-TTATAGACTATT--------TTTA--CCAAAAAA-GAATAACGTG-TTCAA-CTGTGTACATACAAGTTTAATGATGGAGATT--------------G----------ATGCAATTAAT---TCTACAC-GAAGAGT--AGC-AAATTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTGCACATAGTGCAACTG-A-GTTCACGCCT--AATTTTG-TGAAATATTATG-AT-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAACATC-A-TTAATTTTGGCATGAT-----A---------AT--------G-AAAACTCAATCAAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTAAA-AAACG---TTTATAGATAT----ATT-CAAAATAATTTATTGTGGTGGAAAGAC---TA-T-A--TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAGt
gi|3 : GTGGATTAAGATGTTTTGGAAA-CCT--GAAATTT-ATG----TTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGTAAA-CGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAATTATATTATATGT--------TTTCAGG-ATTT------CATATTCTAAAC-TCCTTTGCTTTTTAGATAA------ACTATTTTAACTAAAGAATGAATGATATG-TTCAA-CTGTGTAT-CG-AAGATTAATGGTGAAGATTGATAAAGTGAATCGGCGGAAAACCAATGTCATTAAA---TCTACAC-GACAAGT--AGC-ACATTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTT
gi|4 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtCACACG-G-ACATA-TACA-TTGTAC---CAGTTCTTTGCTTTTG-TAAAGTA------A--CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTGACATATTTCTAAAATCTT-TT-GTCTTGACATAATTCACAA---------ATCTACGCTTG-AGAACTCAATCGAAAAA--TT-CAGGAAAC-TT-GTGA-CCA--TT-AAACTT-TACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGA--------AACAATATTATTATTTCGAATTAATTCATTGTGATGGAAAGATTA-TA-T-A--TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|6 : TTTTTTAAATTAT----GAAA-----TGTTTGTAAAACCCAAT--GTTTTGGCATAATTCA-AATATCTACACAT--------G-ATAAGTCAATCGAAATTCTTTACTCCAGAAATT-GAAAGCCGAATTCAAA-TC-AACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAG------TTGAA-AAA-GTTCTTTAAAAATGT----ATT-CGAGATAATTTATTGTGGTGGAAA---TATTA-T-A--TTTCTAAAtt
gi|7 : gGCGATTAATAAATTTACAC-GACGTGTT--GC-AAAATTCGATTTACACGTTTAGCTG
gi|7 : AGTCTT--AGGTTTAATAAAGTA--ATG-AT-CGTCCACGCTATCACCTGTACATCATTTTTgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|8 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaGTGGTTTATGATCTTGTGGAAA-CTT------TTT-GTGTTAATTGAAGTTCATTATTACTT-TA-AGGT--ATTAC------AT-GCAT
gi|9 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtA---------AT--------G-AAAACTCAATCAAAAAACATTATCCCAAATATT-GAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTAAA-AAA-G---TTTAAAAATAT----ATT--AAGATAATTTATTGTGGTGGAAAGACTA-TATT-AATTTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACCATGCAAACAGTGTGCCATGGTGTAAAATGGTCATATTACACCACGCACAGTGTGCCATGGTGTACGTGTATTCTGAATACACAAGAAGTTTACTGGGAGCCACAATGCCTAGAGTTAGTACCTGATGCCCTCAGTGTTGCACCATGTCGGTATCCATGCTACGTGTCTGTATAGGTGTCATATAATGTTTTAATTTCATATTGTAGGTTTATGATGTTGAAACTTGGATTTTGCGTTGAATGATGAATTACAAAAATTTTGAAGAAGATATTATA
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG
Alignments
lowQualScore : 11 333333333 222222 1 1 11 1 1 666666666666666666666 1 333333 2 11 33333333 11 22222 222222 222222222222 8888888888888888888888888 11 111 11 3333 222222222 1 1 1 1 1 1 1111 11 1 444444444 111 3333 11 111111 7777777777777777777777777 111 7777777777777777777777777 3333 22222 1111 11 11 3333333 1
lowQualScore : 1 5 8 11 8 000000000 0 8 0 0 0 333333 8 1 6 3 7 3 11 3 7 2 777777777777777777777 3 888888 0 8 66 1 1 0 55555555 11 3 8 333 22222 444444 0 777777777777 0000000000000000000000000 77 111 1 6 44 6 1 3 2 6666 3 777777777 3 3 7 3 3 3 0 6 2 7777 0 33 0 0 000000000 3 777 1111 22 3 0 555555 3333333333333333333333333 8 1 555 0 8 0 8 8 666 3333333333333333333333333 8 0 4444 8 22222 7777 88 0 0 0 8 8 8 11 44 2222222 0
lowQualScore : . . . .. . ......... . . . . . ...... . . . . . . .. . . . ..................... . ...... . . .. . . . ........ .. . . ... ..... ...... . ............ ......................... .. ... . . .. . . . . .... . ......... . . . . . . . . . .... . .. . . ......... . ... .... .. . . ...... ......................... . . ... . . . . . ... ......................... . . .... . ..... .... .. . . . . . . .. .. ....... .
lowQualScore : 4 0 0 00 0 000000000 8 0 8 8 8 000000 0 0 7 3 3 3 00 3 3 0 000000000000000000000 3 333333 0 8 44 4 0 8 66666666 44 2 0 000 44444 888888 8 000000000000 0000000000000000000000000 22 777 0 7 55 7 0 5 5 5555 2 000000000 3 3 3 3 3 2 0 7 0 7777 8 88 8 0 000000000 2 555 2222 55 0 2 555555 2222222222222222222222222 0 0 444 8 0 8 0 0 888 0000000000000000000000000 0 8 4444 0 00000 0000 00 8 8 8 0 0 0 00 22 5555555 0
consensus : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( family-7544 ) : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAACCTTTGAA-TTT---G----TTGAAGTTCTTTAT-ACTT-GATAGGTTA-TGATTATATTAT-AGATCAT-TAAACA-TGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATC-TGATGAACAAAA-----TTATAT-TTATGTATATTTTAGGAATTTTTAGGACATATTCTGAAT-TCCT-TCC-TTATAGACTATT-TAC----------CAAAAAAA-GAAAAACGTGTTTCAACCTTTGTACATACAAG-TTAATGATGGAGATT--------------G----------ATGCAATTAAT---T-TACACGGAAGGGGTAGGCAAAATTCTG---TACACGTTTAGCTG
gi|1 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagCAATA---CAATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAAATATTTTCTAACCCTAT---TTTCGGCATGAT-----A---------TT--------GAAAAACTCAAT-AAAAAACATTA-TCCAAATATTGGAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTAAA-CAA-G---TTTAAAAATAT----ATT--AAGATAA-TTATTGTGGTGG-AAGACTA-TA-TAA--TTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|10 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaTTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|11 : TTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCaa
gi|13 : CAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGCTT-AAATACTCGGCTTCGG-TCGCACGTG-aa
gi|15 : acaataataaactgacttggaGTGATTTATGATGCTGTGGAAA-CCT--GAA-TTTTATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-
gi|2 : tGTGATTTATGATGCTGTGGAAA-CCT--GAA-TT-----------------CTTTATTACTT-GATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AAT----TT-T-T-T--------TTTTAGG-ATTT------CATATTCTGAAT-TCCTTTCC-TTATAGACTATT--------TTT--ACCAAAAAA-GAATAACGTG-TTCAA-CTGTGTACATACAAGTTTAATGATGGAGATT--------------G----------ATGCAATTAAT---TCTACAC-GAAGAGT--AGC-AAATTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTGCACATAGTGCAACTG-A-GTTCACGCCT--AATTTTG-TGAAATATTATG-AT-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAACATC-ATTAATTTTGGCATGAT-----A---------AT--------G-AAAACTCAATCAAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTAAA-AAACG---TTTATAGATAT----ATT-CAAAATAATTTATTGTGGTGGAAAGAC---TA-T-A--TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAGt
gi|3 : GTGGATTAAGATGTTTTGGAAA-CCT--GAAATTT-ATG----TTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGTAAA-CGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAATTATATTATATGT--------TTTCAGG-ATTT------CATATTCTAAAC-TCCTTTGCTTTTTAGATAA------ACTATTTTAACTAAAGAATGAATGATATG-TTCAA-CTGTGTAT-CG-AAGATTAATGGTGAAGATTGATAAAGTGAATCGGCGGAAAACCAATGTCATTAAA---TCTACAC-GACAAGT--AGC-ACATTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTT
gi|4 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtCACACG-G-ACATA-TACA-TTGTAC---CAGTTCTTTGCTTTTG-TAAAGTA------A--CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTGACATATTTCTAAAATCTTTT-GTCTTGACATAATTCACAA---------ATCTACGCTTG-AGAACTCAATCGAAAAA--TT-CAGGAAAC-TT-GTGA-CCA--TT-AAACTT-TACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGA--------AACAATATTATTATTTCGAATTAATTCATTGTGATGGAAAGATTA-TA-T-A--TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|6 : TTTTTTAAATTAT----GAAA-----TGTTTGTAAAACCCAAT-GTTTTGGCATAATTCA-AATATCTACACAT--------G-ATAAGTCAATCGAAATTCTTTACTCCAGAAATT-GAAAGCCGAATTCAAA-TC-AACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAG------TTGAA-AAA-GTTCTTTAAAAATGT----ATT-CGAGATAATTTATTGTGGTGGAAA---TATTA-T-A--TTTCTAAAtt
gi|7 : gGCGATTAATAAATTTACAC-GACGTGTT--GC-AAAATTCGATTTACACGTTTAGCTG
gi|7 : AGTCTT--AGGTTTAATAAAGTA--ATG-AT-CGTCCACGCTATCACCTGTACATCATTTTTgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|8 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaGTGGTTTATGATCTTGTGGAAA-CTT------TTT-GTGTTAATTGAAGTTCATTATTACTT-TA-AGGT--ATTAC------AT-GCAT
gi|9 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtA---------AT--------G-AAAACTCAATCAAAAAACATTATCCCAAATATT-GAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTAAA-AAA-G---TTTAAAAATAT----ATT--AAGATAATTTATTGTGGTGGAAAGACTA-TATT-AATTTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACCATGCAAACAGTGTGCCATGGTGTAAAATGGTCATATTACACCACGCACAGTGTGCCATGGTGTACGTGTATTCTGAATACACAAGAAGTTTACTGGGAGCCACAATGCCTAGAGTTAGTACCTGATGCCCTCAGTGTTGCACCATGTCGGTATCCATGCTACGTGTCTGTATAGGTGTCATATAATGTTTTAATTTCATATTGTAGGTTTATGATGTTGAAACTTGGATTTTGCGTTGAATGATGAATTACAAAAATTTTGAAGAAGATATTATA
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG
Alignments
lowQualScore : 11 333333333 222222 1 1 11 1 1 666666666666666666666 1 333333 2 11 33333333 11 22222 222222 222222222222 8888888888888888888888888 11 111 11 3333 222222222 1 1 1 1 1 1 1111 11 1 444444444 111 3333 11 111111 7777777777777777777777777 111 7777777777777777777777777 3333 22222 1111 11 11 3333333 1
lowQualScore : 1 5 8 11 8 000000000 0 8 0 0 0 333333 8 1 6 3 7 3 11 3 7 2 777777777777777777777 3 888888 0 8 66 1 1 0 55555555 11 3 8 333 22222 444444 0 777777777777 0000000000000000000000000 77 111 1 6 44 6 1 3 2 6666 3 777777777 3 3 7 3 3 3 0 6 2 7777 0 33 0 0 000000000 3 777 1111 22 3 0 555555 3333333333333333333333333 8 1 555 0 8 0 8 8 666 3333333333333333333333333 8 0 4444 8 22222 7777 88 0 0 0 8 8 8 11 44 2222222 0
lowQualScore : . . . .. . ......... . . . . . ...... . . . . . . .. . . . ..................... . ...... . . .. . . . ........ .. . . ... ..... ...... . ............ ......................... .. ... . . .. . . . . .... . ......... . . . . . . . . . .... . .. . . ......... . ... .... .. . . ...... ......................... . . ... . . . . . ... ......................... . . .... . ..... .... .. . . . . . . .. .. ....... .
lowQualScore : 4 0 0 00 0 000000000 8 0 8 8 8 000000 0 0 7 3 3 3 00 3 3 0 000000000000000000000 3 333333 0 8 44 4 0 8 66666666 44 2 0 000 44444 888888 8 000000000000 0000000000000000000000000 22 777 0 7 55 7 0 5 5 5555 2 000000000 3 3 3 3 3 2 0 7 0 7777 8 88 8 0 000000000 2 555 2222 55 0 2 555555 2222222222222222222222222 0 0 444 8 0 8 0 0 888 0000000000000000000000000 0 8 4444 0 00000 0000 00 8 8 8 0 0 0 00 22 5555555 0
consensus : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( family-7544 ) : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAACCTTTGAA-TTT---G----TTGAAGTTCTTTAT-ACTT-GATAGGTTA-TGATTATATTAT-AGATCAT-TAAACA-TGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATC-TGATGAACAAAA-----TTATAT-TTATGTATATTTTAGGAATTTTTAGGACATATTCTGAAT-TCCT-TCC-TTATAGACTATT-TAC----------CAAAAAAA-GAAAAACGTGTTTCAACCTTTGTACATACAAG-TTAATGATGGAGATT--------------G----------ATGCAATTAAT---T-TACACGGAAGGGGTAGGCAAAATTCTG---TACACGTTTAGCTG
gi|1 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagCAATA---CAATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAAATATTTTCTAACCCTAT---TTTCGGCATGAT-----A---------TT--------GAAAAACTCAAT-AAAAAACATTA-TCCAAATATTGGAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTAAA-CAA-G---TTTAAAAATAT----ATT--AAGATAA-TTATTGTGGTGG-AAGACTA-TA-TAA--TTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|10 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaTTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|11 : TTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATT-----------TCAG----------ACG---TTAAT---TCTACAC-GAAGAGTTAGGC-ATATTCTGTTTTACACGTTAAGCaa
gi|13 : CAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGCTT-AAATACTCGGCTTCGG-TCGCACGTG-aa
gi|15 : acaataataaactgacttggaGTGATTTATGATGCTGTGGAAA-CCT--GAA-TTTTATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-
gi|2 : tGTGATTTATGATGCTGTGGAAA-CCT--GAA-TT-----------------CTTTATTACTT-GATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AAT----TT-T-T-T--------TTTTAGG-ATTT------CATATTCTGAAT-TCCTTTCC-TTATAGACTATT--------TTT--ACCAAAAAA-GAATAACGTG-TTCAA-CTGTGTACATACAAGTTTAATGATGGAGATT--------------G----------ATGCAATTAAT---TCTACAC-GAAGAGT--AGC-AAATTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTGCACATAGTGCAACTG-A-GTTCACGCCT--AATTTTG-TGAAATATTATG-AT-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAACATC-ATTAATTTTGGCATGAT-----A---------AT--------G-AAAACTCAATCAAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTAAA-AAACG---TTTATAGATAT----ATT-CAAAATAATTTATTGTGGTGGAAAGAC---TA-T-A--TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAGt
gi|3 : GTGGATTAAGATGTTTTGGAAA-CCT--GAAATTT-ATG----TTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGTAAA-CGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAATTATATTATATGT--------TTTCAGG-ATTT------CATATTCTAAAC-TCCTTTGCTTTTTAGATAA------ACTATTTTAACTAAAGAATGAATGATATG-TTCAA-CTGTGTAT-CG-AAGATTAATGGTGAAGATTGATAAAGTGAATCGGCGGAAAACCAATGTCATTAAA---TCTACAC-GACAAGT--AGC-ACATTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTT
gi|4 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtCACACG-G-ACATA-TACA-TTGTAC---CAGTTCTTTGCTTTTG-TAAAGTA------A--CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTGACATATTTCTAAAATCTTTT-GTCTTGACATAATTCACAA---------ATCTACGCTTG-AGAACTCAATCGAAAAA--TT-CAGGAAAC-TT-GTGA-CCA--TT-AAACTT-TACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGA--------AACAATATTATTATTTCGAATTAATTCATTGTGATGGAAAGATTA-TA-T-A--TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|6 : TTTTTTAAATTAT----GAAA-----TGTTTGTAAAACCCAAT-GTTTTGGCATAATTCA-AATATCTACACAT--------G-ATAAGTCAATCGAAATTCTTTACTCCAGAAATT-GAAAGCCGAATTCAAA-TC-AACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAG------TTGAA-AAA-GTTCTTTAAAAATGT----ATT-CGAGATAATTTATTGTGGTGGAAA---TATTA-T-A--TTTCTAAAtt
gi|7 : gGCGATTAATAAATTTACAC-GACGTGTT--GC-AAAATTCGATTTACACGTTTAGCTG
gi|7 : AGTCTT--AGGTTTAATAAAGTA--ATG-AT-CGTCCACGCTATCACCTGTACATCATTTTTgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|8 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaGTGGTTTATGATCTTGTGGAAA-CTT------TTT-GTGTTAATTGAAGTTCATTATTACTT-TA-AGGT--ATTAC------AT-GCAT
gi|9 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtA---------AT--------G-AAAACTCAATCAAAAAACATTATCCCAAATATT-GAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTAAA-AAA-G---TTTAAAAATAT----ATT--AAGATAATTTATTGTGGTGGAAAGACTA-TATT-AATTTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
blockSeqs : T G . . A TGTGTTAA T . C G C A A . AT . T G TTATATTATATGT . . G G AG G G GTGCACG AA G T CCC GTGT ACTGT TTTAATGATGGA GATAAAGTGAATCGGCGGAAAACCA CA AAA C . TA . T T C TTTT T TACAATGT . . T . . T C G A TAC TT A TTATGAT A AAA TTTT TG A ATTAA TCACAAATCTACGCTT . A ACC . C C CCA ATATATAGCAATGTATTT . TGAA T GTTC TATT TC T T . AT AA . .
blockSeqs : T G . . . TTATG . . . T . . A . AC . T . TTTTTT . . G G AG G G GTGCACG AA G . CCC ATGT ACTGT ATTAATGGTGAA TCAG TC . C . TA . T T C . T A . . T . . T . . . AG . . ATGAT A . . G C TTTTG TCAAATATCTACACAT . T ACT . . . TA TATTTAAC . T . CG . C . . . . AA . .
blockSeqs : A G . . . TATG . . . C . T TT A C ACTA TA C . ATA . . T TCAG CG . C . T . A T . . T . . . . A A . . . . CAATG AAT . A ATC . . . AA T . . . G . C . . . . AT . .
blockSeqs : T C . . . . . . . . T T T T . . T . ATG . . T G . . C . . . C T . . CA . . . C T . . . . . . . . . .
blockSeqs : . . T . . . A A
blockSeqCons : ** TGTG***** ****** AG ACG***** AA ***** ****** T*********** TCGG********************* T* ACC CA* G**** C*
originalCons : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-ATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCATTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTG-TTCAA-CTGTGTACACACAAGTTTAATGATGGAGATT-----------TCGG----------ACGCGATTAAT---TCTACAC-GAAGAGTTAGGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATAT----ATT-CGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
finalCons : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTTGTG-----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-T--------TTTTAGG-ATTT------CATATTCTAAATGTCCTNTCCAGTGTAGANTATTACG-----TTTAAACGAAAAAA-GAACNAC-----TCA------GTACACACAAGT-----------GATTTCGG---------------------ACGCGATTAAT---TCTACAC-GAAGAGTT-GGC-ANATTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------AT--------G-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCA-CAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAAG----TTTAAAAATAT----ATTC-GAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CACCATGCAAACAGTGTGCCATGGTGTAAAATGGTCATATTACACCACGCACAGTGTGCCATGGTGTACGTGTATTCTGAATACACAAGAAGTTTACTGGGAGCCACAATGCCTAGAGTTAGTACCTGATGCCCTCAGTGTTGCACCATGTCGGTATCCATGCTACGTGTCTGTATAGGTGTCATATAATGTTTTAATTTCATATTGTAGGTTTATGATGTTGAAACTTGGATTTTGCGTTGAATGATGAATTACAAAAATTTTGAAGAAGATATTATA
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG
Alignments
lowQualScore : 111111111111111111
lowQualScore : 1 22222222 222222 1 1 11 1 1 666666666666666666666 222 2222 2 22 55555555 11 888888888888888 000000000000000000 11 111 11 3333 222222222 1 1 1 1 1 1 1111 11 1 444444444 111 3333 11 111111 888888888888888888888888 111 7777777777777777777777777 3333 22222 1111 1 11 3333333 1
lowQualScore : 2 2 6 99 3 00000000 0 8 0 0 0 333333 8 1 6 3 7 3 11 3 7 2 777777777777777777777 333 8888 0 1 00 1 1 0 44444444 11 3 8 333 777777777777777 777777777777777777 66 111 1 99 66 1 6 2 6666 3 777777777 3 3 7 3 3 3 0 6 2 7777 0 33 0 0 000000000 3 777 1111 22 3 0 555555 222222222222222222222222 8 6 555 0 8 8 8 666 3333333333333333333333333 8 0 4444 8 22222 8 7777 0 0 0 0 8 8 8 11 44 2222222 0
lowQualScore : . . . .. . ........ . . . . . ...... . . . . . . .. . . . ..................... ... .... . . .. . . . ........ .. . . ... ............... .................. .. ... . .. .. . . . .... . ......... . . . . . . . . . .... . .. . . ......... . ... .... .. . . ...... ........................ . . ... . . . . ... ......................... . . .... . ..... . .... . . . . . . . .. .. ....... .
lowQualScore : 5 5 7 22 3 33333333 8 0 8 8 8 000000 0 0 7 3 3 3 00 3 3 0 000000000000000000000 333 3333 0 0 88 4 0 8 00000000 44 2 0 000 000000000000000 888888888888888888 44 777 0 22 88 0 7 5 5555 2 000000000 3 3 3 3 3 2 0 7 0 7777 8 88 8 0 000000000 2 555 2222 55 0 2 555555 222222222222222222222222 0 0 444 8 0 0 0 888 0000000000000000000000000 0 8 4444 0 00000 0 0000 0 8 8 8 0 0 0 00 22 5555555 0
consensus : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-GTG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-TT--------TTTAGGA---TTT----CATATTCTAAATGTCCTTTCCANTGTAGANTATTGTGCAC-GTTTAAACGAAAAAA-GAACNACGTGT-TCAACC-T-GTACACACAAGTT-A--G--GG-GATTTCAGACGCGATTAAT---TCTACACGAA--GAGTT-GGCANA-TTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------A--------TG-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATA-TA----TTCGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
Reference ( family-7544 ) : GTGGTTTATGATGCTGTGGAAA-CCT--GAA-TTT-GTG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-ANATCAT-TAAACAATGCATTCA-GCGATATTCTGAACTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACAGAAT----TTATAT-TT--------TTTAGGA---TTT----CATATTCTAAATGTCCTNTCCAGTGTAGANTATT----AC-GTTTAAACGAAAAAA-GAACNAC-----TCA------GTACACACAAGT-----------GATTTCGGACGCGATTAAT---TCTACACGAA--GAGTT-GGCANA-TTCTGTTTTACACGTTTAGCTGCAACA---CAATTTATTTTGGT-CAATGT-ACGCACGAGGTCTG-CGT-GCTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGTCCT--AATTTTG-TGAAGTA-TATG-AT-CGACCACACAATCACCTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAAAACCTATT-GTTTTGGCATGATTCA-AA---------A--------TG-AAAACTCAATCGAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TT-CACAAAGAGGACAGCAA-----------------T-------G-ATATCAGT---TTTTAAA-AAA-G---TTTAAAAATA-TA----TTCGAGATAATTTATTGTGGTGGAAAGACTA-TA-T-A--TTTCTAAAGATANAGTGTG-------GATTTATTTGATCGG-GTCAG
gi|1 : GTGGATTATGAT-CTGTGGAAAACCTTTGAA-TTT-GT------TGAAGTTCTTTAT-ACTT-GATAGGTTA-TGATTATATTAT-AGATCAT-TAAACA-TGCAATCATGCGTCATTCTGA--TTCGCAATGTCCGTAAAACGATTCAGCTTGTCATATCTTTCATCT-GATGAACAAAAT----T-ATAT-TTATGTATATTTTAGGAATTTTTAGGACATATTCTGAAT-TCCTTCCT--TATAGACTATTT---AC--------CAAAAAAA-GAAAAACGTGTTTCAACCTTTGTACATACAAGTTAATGATGGA-GATT---GATGCAATTAAT---T-TACACGGAAGGGGTA-GGCAAAATTCTGT---ACACGTTTAGCTG
gi|1 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaagCAATA---CAATTTATT--GGT-CAATGTTACGCACGAGGTCTGGCGTAGCTTTATCGA-CAACTGCTTTGAATACTCGGTTACGGGTCGCACGTG-ACATAGTGCAGCTG-ACGTTCAGCCCT--AATTTTG-TGAAATAGTATGAATACGACCACACAATCACTTGTGC-------TAT---TCATA---GTAA-GAAATATTTTCTAACCCTAT---TTTCGGCATGAT-----A---------T--------TGAAAAACTCAAT-AAAAAACATTA-TCCAAATATTGGAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------GAATATCAG----TTTTAAA-CAA-G---TTTAAAAATA-TA----TT-AAGATAA-TTATTGTGGTGG-AAGACTA-TA-TAA--TTTCTAAAGAT-TAGTGTGGATCAATGATTTATTTGATCGGTGTCAGaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggacaatacaatttattggtcaatgttacgcacgaggtctggcgtagctttatcgacaactgctttgaatactcggttacgggtcgcacgtgacatagtgcagctgacgttcagccctaattttgtgaaatagtatgaatacgaccacacaatcacttgtgctattcatagtaagaaatattttctaaccctattttcggcatgatattgaaaaactcaataaaaaacattatccaaatattggaaagccgagttaaattccaaagaggacagcaatgaatatcagttttaaacaagtttaaaaatatattaagataattattgtggtggaagactatataatttctaaagattagtgtggatcaatgatttatttgatcggtgtcagtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|10 : gccacgactatttcccgtgcaccggtggaaacaacacggtgtaaaaaagggtctgtgtttacaccgtggaccacgcgctgcgcgtttgtattgtgtattccgaacacttgtcaggaatttgccccacctcataacaggggcatcccctaattcccgtggtcgcacgtgtcttttatgaaatgttcaattattaattatggaaggtggattatgatctgtggaaaacctttgaatttgttgaagttctttatacttgataggttatgattatattatagatcattaaacatgcaatcatgcgtcattctgattcgcaatgtccgtaaaacgattcagcttgtcatatctttcatctgatgaacaaaattatatttatgtatattttaggaatttttaggacatattctgaattccttccttatagactatttaccaaaaaaagaaaaacgtgtttcaacctttgtacatacaagttaatgatggagattgatgcaattaatttacacggaaggggtaggcaaaattctgtacacgtttagctgaataattactcagtcaagattatgggaaaatcattttcacataataaactgacttggaTTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATTTCAGACG---TTAAT---TCTACACGAA--GAGTTAGGCATA-TTCTGTTTTACACGTTAAGCtaagttggagtccgtgcgatctacactgactttgtaatatggttccagactttcccattgtcacttcctgtatccgacttaagtccaatattt
gi|11 : TTTTAAATGTCCTGTCCAGTGTAGAGTATTGTGCAC-GTTTAAACGAAAAAA-GGCCCAC-----TCA-------TACACACAAGT------------ATTTCAGACG---TTAAT---TCTACACGAA--GAGTTAGGCATA-TTCTGTTTTACACGTTAAGCaa
gi|13 : CAACA----AATTTCTATTGG----A----ACGCACGAGGTCTG-CGT-GCTTTATCATTCCTCTGCTT-AAATACTCGGCTTCGG-TCGCACGTG-aa
gi|15 : acaataataaactgacttggaGTGATTTATGATGCTGTGGAAA-CCT--GAA-TTTTATG----TTGAAGTTCTTTATTACTT-GATAGGTTAATGAT------AT-
gi|2 : tGTGATTTATGATGCTGTGGAAA-CCT--GAA-TT-----------------CTTTATTACTT-GATAGGTTAATGAT------AT-AGATCAT-TAAACCATGCATTCA-GCGATATTCTGAATTTCGAAATGTCAGTAAA-CGATCAACCTTTTCATATCTTTCATCTTGATGAACA-AAT----TT-T-T-TT--------TTTAGGA---TTT----CATATTCTGAAT-TCCTTTCC-TTATAGACTATT--------TTT--ACCAAAAAA-GAATAACGTGT-TCAACTGT-GTACATACAAGTTTAATGATGGAGATT---GATGCAATTAAT---TCTACACGAA--GAG-T-AGCAAA-TTCTGTTTTACACGTTTAGCTGCAACA----AATTTATTTTGGTACAATGT-ACGCACGAGATCTG-CGT-GTTTTATCGATCAACTGCTT-GAATACTCGGTTACGG-TCGCACGTGCACATAGTGCAACTG-A-GTTCACGCCT--AATTTTG-TGAAATATTATG-AT-CGACCACACAATCACTTGTGCATCATTTTTT---TTAT----GAAA-GAAATATTTCTAACATC-ATTAATTTTGGCATGAT-----A---------A--------TG-AAAACTCAATCAAAAAACATTACCCCAAATATT-GAAAGCCGAGTT-AAA-TTCCACAAAGAGGACAACAA-----------------T-------G-ATATCAGT---TTTTAAA-AAACG---TTTATAGATA-TA----TTCAAAATAATTTATTGTGGTGGAAAGAC---TA-T-A--TTTCTAAAGATAAAGTGTG-------GATTTATTTGATCGG-GTCAGt
gi|3 : GTGGATTAAGATGTTTTGGAAA-CCT--GAAATTT-ATG----TTGAAGTTCTTTATTACTTTGATAAGGTAATGAT------ATCATAT-ATATAAATAATTCATTTA-GCGATATTCTGAACTTCAAAATGTCAGTAAA-CGATCAGCCTTTTCATATCTGTCATCTTGATGAACAGAATTATATTATATGTT--------TTCAGGA---TTT----CATATTCTAAAC-TCCTTTGCTTTTTAGATAA------ACTATTTTAACTAAAGAATGAATGA
gi|3 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtATTAAA---TCTACACGAC--AAGT--AGCACA-TTTTGTTTTACACGATTAGCTG-AACGTTTTAATATATTTTtatgttcaactgtgtatcgaagattaatggtgaagattgataaagtgaatcggcggaaaaccaatgtcattaaatctacacgacaagtagcacattttgttttacacgattagctgaacgttttaatatatttt
gi|4 : cgggccacgagcattttggaaaacacacggtgtaaaatggtctgtgttgcaccgtgtacacggcgctgtatgtgtattccgagtgtaaaagagttccatcatctctaaacggctaactcttagtatcctccatgtcgcaccgtgtttttatgcaattttaaagcatatcatgaatgaaggtgtggattaagatgttttggaaacctgaaatttatgttgaagttctttattactttgataaggtaatgatatcatatatataaataattcatttagcgatattctgaacttcaaaatgtcagtaaacgatcagccttttcatatctgtcatcttgatgaacagaattatattatatgttttcaggatttcatattctaaactcctttgctttttagataaactattttaactaaagaatgaatgatatgttcaactgtgtatcgaagattaatggtgaagattgataaagtgaatcggcggaaaaccaatgtcCACACG-G-ACATA-TACA-TTGTAC---CAGTTCTTTGCTTTTG-TAAAGTA------A--CGACCTCACATTCATCTGTGCATCATTTTTT---TTTTTTTTGATTTGACATATTTCTAAAATCTTTT-GTCTTGACATAATTCACAA---------ATCTACGCTTG-AGAACTCAATCGAAAA--ATT-CAGGAAAC-TT-GTGA-CC--ATT-AAACTT-TACGGAGAACACAGCAA-----------------TATTTAACG-A-ATCAATGAATCCTACATAGA--------AACAATATTATTATTTCGAATTAATTCATTGTGATGGAAAGATTA-TA-T-A--TTTCTAAAAATAAAGTGTG-------ACTTTATTTGATCGG-GTCAG
gi|5 : GGTTTATGATGTT---GAAA-CTT--GGATTTT-GCG----TTGAAtt
gi|6 : caccatgcaaacagtgtgccatggtgtaaaatggtcatattacaccacgcacagtgtgccatggtgtacgtgtattctgaatacacaagaagtttactgggagccacaatgcctagagttagtacctgatgccctcagtgttgcaccatgtcggtatccatgctacgtgtctgtataggtgtcatataatgttttaatttcatattgtaTTTTTTAAATTAT----GAAA-----TGTTTGTAAAACCCAAT-GTTTTGGCATAATTCA-AATATCTACACA--------TG-ATAAGTCAATCGAAATTCTTTACTCCAGAAATT-GAAAGCCGAATTCAAA-TC-AACAGAGAACACAGCAAATATATAGCAATGTATTT-------G-TTATCAG------TTGAA-AAA-GTTCTTTAAAAATG-TA----TTCGAGATAATTTATTGTGGTGGAAA---TATTA-T-A--TTTCTAAAtgatgaattacaaaaattttgaagaagatattata
gi|7 : gGCGATTAATAAATTTACACGAC--GTGTT-GCAAAA-TTC-GATTTACACGTTTAGCTG
gi|7 : AGTCTT--AGGTTTAATAAAGTA--ATG-AT-CGTCCACGCTATCACCTGTACATCATTTTTgatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaagtcttaggtttaataaagtaatgatcgtccacgctatcacctgtacatcattttt
gi|8 : gcgattaataaatttacacgacgtgttgcaaaattcgatttacacgtttagctggatattagtcgtcagtcagcaataacattgaaaatgagttcaccatgatattatattgcaacatgcttattgtatgtcacgtttagtcaGTGGTTTATGATCTTGTGGAAA-CTT------TTT-GTGTTAATTGAAGTTCATTATTACTT-TA-AGGT--ATTAC------AT-GCAT
gi|9 : cactatggatacgtacggcgctgcgcgttgtatgagtatagtcccaccacctctaaaatgctagttcctataaccctccgtgtcgcaccgttttgaaatgttgaaatttgaatgaaggtA---------A--------TG-AAAACTCAATCAAAAAACATTATCCCAAATATT-GAAAGCCGAGTT-AAA-TT-C-CAAAGAGGACAGCAA-----------------T-------G-ATATCAG----TTTTAAA-AAA-G---TTTAAAAATA-TA----TT-AAGATAATTTATTGTGGTGGAAAGACTA-TATT-AATTTTCTAAAGATATAGTGTG-------GATTTATTTGATCGG-GTCAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTTCCCTTGTCCAATTCCTGGTTGACTTCCTGTATACACGAGCTGTTAGTCAATATTTT
Unaligned ( gi|14 ): AGTACAGACCATAAGTATTTTCCATCGCAATGTGTTAGACACTGTAAAATGGTCTGTATTAAAACGTGTACACGGCATGG
Unaligned ( gi|16 ): TGTATTAAAACGTGTACACGGCATGGTGCGG