lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 1 1 222 777777777777777777777777777777777777777777777777777 33333 6666666 11 222 1 1 1 1 1 1
lowQualScore : . . . . ... ................................................... ..... ....... .. ... . . . . . .
lowQualScore : 7 6 6 6 888 777777777777777777777777777777777777777777777777777 44444 4444444 99 444 4 4 4 4 4 5
consensus : AATCGG-AA-CA-TCACTC-GGC---CTTTT-----------CC-G---T----------------TTTT-----TCTAC-----G-------GAAAA--G---GC-C-GAGT-GA-TG-TT-CCGAT
Reference ( gi|5 ) : AATCGG-AA-CA-TCACTC-GGC---CTCTT-----------CCTG---T----G-----------TTTT--C--TCTCC-----G-------GAAAA--G---GC-C-GAGT-GA-TG-TT-CCGAT
gi|1 : AATCGG-AA-CA-TCACTC-GGC---CTTTTTCGTACCCCCCCCTT---T----T-----------TTTT--T--TTAAC-----A-------GAAAA--G---GC-T-GAGT-GA-TG-TT-CCGAT
gi|12 : AATCGG-AA-CA-TCACTT-GGC---CT--------------------------------------TTTT--C------------G-------GAAAA--G---GC-C-GAGT-GA-TG-TT-CCAATg
gi|12 : aAATTGG-AA-CA-TCACTC-GGC---CTTTT-----------CC-----------------------------------------G-------AAAAA--G---GC-C-AAGT-GA-TG-TT-CCGAT
gi|8 : AATCGA-AA-CA-TCACTC-GGC---CTTTT-----------CC-G---T----A-----------GAAT--T--TCTAC-----G-------GAAAA--G---GC-C-GAGT-AA-AG-Tt
gi|13 : AATCGG-AA-CA-TCACTC-GGC---CT-----------------------------------------------TTTCC-----G-------GACAA--A---GC-C-GAAT-GA-TG-TT-CCAAT
gi|7 : AATCGG-AA-CA-TCAC-C-GGC---CTATT-----------TCGG---A----GA----------TTTT--CGTTCTCC-----G-------G-AAG--G---GCAC-GCGTCGA-TG-TT-g
gi|2 : AATCGG-AAACA-TCACTC-GGC---CTTTT-----------CC
gi|17 : ctattccggtttgggagtattccAATCGG-AA-CA-TCACTC-GGC---CTTTT-----------CCgtgttgaagtgcactgaagagtgatgc
gi|1 : ATCGG-AA-CA-TCACTC-AGC---CT-TT-----------TCTG---T----gataa
gi|10 : ATCGG-AA-CA-TCACTC-GGC---CTTTT-----------C----------------------------------TAC-----G-------GAAAAAAG---GC-C-GAGT-GA-TG-TT-CCGAtaaaaaaaaaaaggggggggtacgaaaaaggccgagtgatgttccgattg
gi|6 : ATCGGTAA-CA-TCACTC-GGC---CTTTT-----------CC-G---T----AGAAA-------TT--------CTAC-----G-------GAAAA--G---GC-CCGAGT-GA-TG-TT-CC
gi|14 : tATCGG-AA-CA-TCATTC-GGC---CTTTT-----------CC-----------------------------------------G-------AAGAA--G---GT-C-GAGT-GA-TG-TT-CCGA
gi|9 : ATCGG-AA-CA-TCACTC-GGC---TTTTT-----------CTT---------------------TTTT--T--TGT-----------------AAA--A---GC-C-GAGT-AA-TG-TT-CCGATat
gi|9 : ATCGG-AA-CA-TTACTC-GGC--------------------------------------------TTT-------TAC-----AAAAAAAAGAAAA--A---GC-C-GAGT-GA-TG-TT-CCGAT
gi|13 : ATTGG-AA-CA-TCATTC-GGC---TT---------------------T----G-----------T-----------CC-----G-------GAAAA--G---GC-C-GAGT-GA-TG-TT-CCGAT
gi|4 : ATGGG-AA-CA-TCGCTC-GGC---CTTTT-----------CC----------G-----------TTTTACC--TCTACTTAAAA-------GAACA--G---GC-T-GACC-TA-TG-TT-CCGtg
gi|10 : cTCGG-AA-CA-TCACTC-GGC---CT--------------------------------------TTTT-------TCC-----GTA-----GAAAA--G---GC-C-GAGT-GA-TG-TT-CCGAT
gi|14 : TCGG-AA-CA-TCACTC-GAC---CT-----------------------------------------------TCTTC-----G-------GAAAA--G---GC-C-GAAT-GA-TG-TT-CCGAT
gi|15 : TCGG-AA-CA-TCACTC-GGT---CTTTT--------------------------------------------TCTAC-----G-------GAAA---G---GC-C-GAGT-GA-TG-TT-CCGAat
gi|15 : TCGG-AA-CA-TCACTC-GGC---CT-TT-----------CC-G---T----A------------------------------G-------AAAAA--G---AC-C-GAGT-GA-TG-TT-CCGA
gi|3 : TCGG-AA-CACTCACTC-GAC---TT-TT-----------CCGG--------GAGAAAAAAAAATT----------CC-----G-------GAAAA--GACCGC-C-GAGT-TA-TG-TT-
gi|11 : attcCGG-AA-CA-TCACTC--GC---CTTTT-----------CC------------------------TT--T--TCTAC-----G-------GCAAA--G---TC-C-GA-T-GA-TG-T
gi|6 : ataGG-AA-CA-TCACTCGGGC---CTTTT-----------CC-G---T----A-----------GAAT--T--TCTAC-----G-------GAAAA--G---GC-C-GAGT-GA-TG-TTACCGATg
gi|3 : tG-AA-CA-TAACTC-GGCGGTCTTTT-----------CCGGAATT----T-----------TTTT--T--TCTCC-----C-------GGAAA--A---GT-C-GAGT-GAGTG-TT-CCGA
gi|8 : attcA-CT-TTACTC-GGC---CTTTT-----------CC-G---TAGAAA-----------T--------TCTAC-----G-------GAAAA--G---GC-C-GAGT-GA-TG-TT-TCGAT
gi|16 : T--T--TCTAC-----G-------GAAAA--G---GC-C-GAGT-GA-TG-Tt
gi|7 : --TCTCC-----G-------AAATA--G---GC-C-G-GT-GA-TG-TT-CCGATaacgaatt
gi|2 : aTCC-----G-------GAAAA--G---GC-C-GAGT-GA-TGTTT-CCGATttttcgttctccggaagggcacgcgtcgatgtt
gi|1 : ctattccggtttgggagtatC-----G-------AAAAA--G---GC-C-GAGT-GA-TG-TT-CCGATtgtgttgaagtgcactgaagagtgatgc
gi|4 : atcggaacatcactcagccttttctgttaaaaaaaaaaaggggggggtaC-----G-------GAAAA--G---GC-C-GAGC-GA-TG-TT-CCCATtg
gi|11 : c-----G-------GAAAA--G---GC---GAGT-GA-TG-TT-CCGttttacctctacttaaaagaacaggctgacctatgttccg
gi|17 : ata-----G-------GAAAA--G---GC-C-GAGT-GA-TG-TT-CCGATttttctacggcaaagtccgatgatgtg
Alignments
lowQualScore : 5555555555555555555555555555555555555
lowQualScore : 2 2 444 9999999999999999999999999999999999999 77 66666 33 2 2 2 2 3
lowQualScore : . . ... ..................................... .. ..... .. . . . . .
lowQualScore : 5 5 111 9999999999999999999999999999999999999 22 22222 44 5 5 5 5 1
consensus : AATCGGAA-CATCACTCGG-C---CTTTTCC---G------T-------------TT--T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
Reference ( family-7532 ) : AATCGGAA-CATCACTCGG-C---CTTTTCC---G------T-------------TT--T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
gi|1 : AATCGGAA-CATCACTCGG-C---CTTTTTC---G------TACCCCCCCCTTTTTT--T-------TTTTAAC-----AG--AAAAGGC-TGAGT-GA-TG-TT-CCGAT
gi|10 : ATCGGAA-CATCACTCGG-C---C-------------------------------T--T-------TTCTA-C-----GGAAAAAAGGC-CGAGT-GA-TG-TT-CCGAg
gi|11 : CGGAA-CATCACTC-G-C---CTTTTCC-------------------------T--T-------TTCTA-C-----GG--CAAAGTC-CGA-T-GA-TG-T
gi|12 : ataAATCGGAA-CATCACTTGG-C---CTTTTTC---G---------------------------------------------G--AAAAGGC-CGAGT-GA-TG-TT-CCAATg
gi|13 : aAATCGGAA-CATCACTCGG-C---CTTTTC-------------------------------------------C-----GG--ACAAAGC-CGAAT-GA-TG-TT-CCAAT
gi|14 : TCGGAA-CATCACTCGA-C---CTT------------------------------------------CTT-C-----GG--AAAAGGC-CGAAT-GA-TG-TT-CCGATg
gi|15 : TCGGAA-CATCACTCGG-T---CTTTT---------------------------------------TCTA-C-----GG--AAA-GGC-CGAGT-GA-TG-TT-CCGAat
gi|16 : --T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-T
gi|17 : AATCGGAA-CATCACTCGG-C---CTTTTCC---aacgaatt
gi|2 : ---CTATTCC---G------G-------------TT--TGGGAGTATTC---C-----GG--AAAAGGC-CGAGT-GA-TGTTT-CCGATgataa
gi|2 : AATCGGAAACATCACTCGG-C---CTTTTCC---G------tgtgttgaagtgcactgaagagtgatgc
gi|3 : ctattccggtttgggagtattcGAA-CATAACTCGG-CGGTCTTTTCC---GGAATTTT-------------TT--T-------TTCTC-C-----CG--GAAAAGT-CGAGT-GAGTG-TT-CCGAgtgttgaagtgcactgaagagtgatgc
gi|4 : attcATGGGAA-CATCGCTCGG-C---CTTTTCC---G------T-------------TT--TAC-----CTCTA-CTTAAAAG--AACAGGC-TGACC-TA-TG-TT-CCG
gi|5 : cAATCGGAA-CATCACTCGG-C---CTCTTCCTGTG------T-------------TT--T-------CTCTC-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
gi|6 : GGAA-CATCACTCGGGC---CTTTTCC---G------T-------------AGAAT-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TTACCGAT
gi|7 : tAATCGGAA-CATCAC-CGG-C---CTATTTC---GGAGA--T-------------TT--TCG-----TTCTC-C-----GG---AAGGGCACGCGTCGA-TG-TT-
gi|8 : AATCGAAA-CATCACTCGG-C---CTTTTCC---G------T-------------AGAAT-------TTCTA-C-----GG--AAAAGGC-CGAGT-AA-AG-T
gi|9 : ATCGGAA-CATCACTCGG-C---TTTTTC-----------T-------------TT--T-------TTTT---------G--TAAAAGC-CGAGT-AA-TG-TT-CCGAT
Alignments
lowQualScore : 5555555555555555555555555555555555555
lowQualScore : 2 2 444 9999999999999999999999999999999999999 77 66666 33 2 2 2 2 3
lowQualScore : . . ... ..................................... .. ..... .. . . . . .
lowQualScore : 5 5 111 9999999999999999999999999999999999999 22 22222 44 5 5 5 5 1
consensus : AATCGGAA-CATCACTCGG-C---CTTTTCC---G------T-------------TT--T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
Reference ( family-7532 ) : AATCGGAA-CATCACTCGG-C---CTTTTCC---G------T-------------TT--T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
gi|1 : AATCGGAA-CATCACTCGG-C---CTTTTTC---G------TACCCCCCCCTTTTTT--T-------TTTTAAC-----AG--AAAAGGC-TGAGT-GA-TG-TT-CCGAT
gi|10 : ATCGGAA-CATCACTCGG-C---C-------------------------------T--T-------TTCTA-C-----GGAAAAAAGGC-CGAGT-GA-TG-TT-CCGAg
gi|11 : CGGAA-CATCACTC-G-C---CTTTTCC-------------------------T--T-------TTCTA-C-----GG--CAAAGTC-CGA-T-GA-TG-T
gi|12 : ataAATCGGAA-CATCACTTGG-C---CTTTTTC---G---------------------------------------------G--AAAAGGC-CGAGT-GA-TG-TT-CCAATg
gi|13 : aAATCGGAA-CATCACTCGG-C---CTTTTC-------------------------------------------C-----GG--ACAAAGC-CGAAT-GA-TG-TT-CCAAT
gi|14 : TCGGAA-CATCACTCGA-C---CTT------------------------------------------CTT-C-----GG--AAAAGGC-CGAAT-GA-TG-TT-CCGATg
gi|15 : TCGGAA-CATCACTCGG-T---CTTTT---------------------------------------TCTA-C-----GG--AAA-GGC-CGAGT-GA-TG-TT-CCGAat
gi|16 : --T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-T
gi|17 : AATCGGAA-CATCACTCGG-C---CTTTTCC---aacgaatt
gi|2 : ---CTATTCC---G------G-------------TT--TGGGAGTATTC---C-----GG--AAAAGGC-CGAGT-GA-TGTTT-CCGATgataa
gi|2 : AATCGGAAACATCACTCGG-C---CTTTTCC---G------tgtgttgaagtgcactgaagagtgatgc
gi|3 : ctattccggtttgggagtattcGAA-CATAACTCGG-CGGTCTTTTCC---GGAATTTT-------------TT--T-------TTCTC-C-----CG--GAAAAGT-CGAGT-GAGTG-TT-CCGAgtgttgaagtgcactgaagagtgatgc
gi|4 : attcATGGGAA-CATCGCTCGG-C---CTTTTCC---G------T-------------TT--TAC-----CTCTA-CTTAAAAG--AACAGGC-TGACC-TA-TG-TT-CCG
gi|5 : cAATCGGAA-CATCACTCGG-C---CTCTTCCTGTG------T-------------TT--T-------CTCTC-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
gi|6 : GGAA-CATCACTCGGGC---CTTTTCC---G------T-------------AGAAT-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TTACCGAT
gi|7 : tAATCGGAA-CATCAC-CGG-C---CTATTTC---GGAGA--T-------------TT--TCG-----TTCTC-C-----GG---AAGGGCACGCGTCGA-TG-TT-
gi|8 : AATCGAAA-CATCACTCGG-C---CTTTTCC---G------T-------------AGAAT-------TTCTA-C-----GG--AAAAGGC-CGAGT-AA-AG-T
gi|9 : ATCGGAA-CATCACTCGG-C---TTTTTC-----------T-------------TT--T-------TTTT---------G--TAAAAGC-CGAGT-AA-TG-TT-CCGAT
blockSeqs : A G GGT CGGTTTGGGAGTA A TTAAA AA A C G T A
blockSeqs : . . . CGGAATTTTTTT A . . . . . . .
blockSeqs : . . . CGGAGATTTTCG T . . . . . . .
blockSeqs : . . . CTGTGTTTT A . . . . . . .
blockSeqs : . . . CGTTTTAC A . . . . . . .
blockSeqs : . . . CGTAGAAT C . . . . . . .
blockSeqs : . . . CGTAGAAT A . . . . . . .
blockSeqs : . . . TTTT C . . . . . . .
blockSeqs : . . . CTT A . . . . . . .
blockSeqs : . . . TT C . . . . . . .
blockSeqs : . . . CG A . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : .
blockSeqCons : CGTT********************************* A*
originalCons : AATCGGAA-CATCACTCGG-C---CTTTTCC---G------T-------------TT--T-------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
finalCons : AATCGGAA-CATCACTCGG-C---CTTTTCCGTT---------------------------------TTCTA-C-----GG--AAAAGGC-CGAGT-GA-TG-TT-CCGAT
Alignments
lowQualScore : 55555555555555555555555555555555555555 111
lowQualScore : 2 2 444 55555555555555555555555555555555555555 000 66666 33 2 2 2 3
lowQualScore : . . ... ...................................... ... ..... .. . . . .
lowQualScore : 5 5 444 22222222222222222222222222222222222222 333 77777 77 7 7 7 3
consensus : AATCGGAA-CATCACTCGG-C---CTTTTCC---G--------T---------------T----T----TCTA--C-----GG--AAAAGGC-CGAGT-GA-TGTT-CCGAT
Reference ( family-7532 ) : AATCGGAA-CATCACTCGG-C---CTTTTCC---G--------T---------------T----T----TCTA--C-----GG--AAAAGGC-CGAGT-GA-TGTT-CCGAT
gi|1 : AATCGGAA-CATCACTCGG-C---CTTTTTC---G--------TACCCCCCCCTTTTTTT----T----TTTAA-C-----AG--AAAAGGC-TGAGT-GA-TGTT-CCGAT
gi|10 : ATCGGAA-CATCACTCGG-C---C------------------T---------------T----T----TCTA--C-----GGAAAAAAGGC-CGAGT-GA-TGTT-CCGAg
gi|11 : CGGAA-CATCACTCG--C---CTTTTCC------------T---------------T----T----TCTA--C-----GG--CAAAGTC-CGA-T-GA-TGT
gi|12 : ataAATCGGAA-CATCACTTGG-C---CTTTTTC---G-----------------------------------------------G--AAAAGGC-CGAGT-GA-TGTT-CCAATg
gi|13 : aAATCGGAA-CATCACTCGG-C---CTTTTC---------------------------------------------C-----GG--ACAAAGC-CGAAT-GA-TGTT-CCAAT
gi|14 : TCGGAA-CATCACTCGA-C---CTT-------------------------------------------CTT--C-----GG--AAAAGGC-CGAAT-GA-TGTT-CCGATg
gi|15 : TCGGAA-CATCACTCGG-T---CTTTT----------------------------------------TCTA--C-----GG--AAA-GGC-CGAGT-GA-TGTT-CCGAat
gi|16 : ---------------T----T----TCTA--C-----GG--AAAAGGC-CGAGT-GA-TGT
gi|17 : AATCGGAA-CATCACTCGG-C---CTTTTCC---aacgaatt
gi|2 : AATCGGAAACATCACTCGG-C---CTTTTCC---G--------gataa
gi|3 : ctattccggtttgggagtattcGAA-CATAACTCGG-CGGTCTTTTCC---GGAATTTTTT---------------T----T----TCTC--C-----CG--GAAAAGT-CGAGT-GAGTGTT-CCGAgtgttgaagtgcactgaagagtgatgc
gi|4 : attcATGGGAA-CATCGCTCGG-C---CTTTTCC---G--------T---------------T----TTACCTCTA--CTTAAAAG--AACAGGC-TGACC-TA-TGTT-CCG
gi|5 : cAATCGGAA-CATCACTCGG-C---CTCTTCCTGTG--------T---------------T----T----TCTCTCC-----GG--AAAAGGC-CGAGT-GA-TGTT-CCGAT
gi|6 : GGAA-CATCACTCGGGC---CTTTTCC---G--------TAGAA-----------T----T----TCTA--C-----GG--AAAAGGC-CGAGT-GA-TGTTACCGAT
gi|7 : tAATCGGAA-CATCAC-CGG-C---CTATTTC---GGAGA----T---------------TTTCGT----TCTC--C-----GG---AAGGGCACGCGTCGA-TGTT-
gi|8 : AATCGAAA-CATCACTCGG-C---CTTTTCC---G--------TAGAA-----------T----T----TCTA--C-----GG--AAAAGGC-CGAGT-AA-AGT
gi|9 : ATCGGAA-CATCACTCGG-C---TTTTTCT---T--------T---------------T----T----TTT----------G--TAAAAGC-CGAGT-AA-TGTT-CCGAT