lowQualScore : 1111111111 1111111111111111111111111111111111111111111111111111111 1111111111111111 111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 2222222222 1111 1 44444444444444444444 1111 222 11111 111 2222 44444444 2 11 555555555 2 1 111 1111 1 1 11 8888888888888888888888888888888888888888888 33 22 3333333 1 1 11 1 4 444444444444444 22 11 11111 1 55555555555 1 1 33 11 1 1 2 11 1 1 22 1 222 111 666666666666666 11 1 1 33 111 1 33333 1 2 1 2222 1 1111 22 1 2 11 22 1 5555 2 1 333 55 2 1 2 1111111111 1 4 8888888888888888 444444 4444444444444444444444444444444444444444444444444444444 2 1 4444444444444444 333 3 8888888888888888888888888 1 22 4444444 222 22 22222 1 2 555 1111111111111111 1 2 22222 333 22 2 1 111111111111111111111111111 11 1 333 2 1 55 2 55555555555 33333 1 2 1 222 2 44 66666666 11 33333333333333333333333333333333333333333333333333333333333333333333 11 11 8888888888888 111 1 333 44444444 1 444444444 11 444 2 111 55 666666666666666666 3333333 1 1 1 1 2 999999999999999999999999 4 2 1 22 1 5555555555555555 1 1 22 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 777 1 1
lowQualScore : 4 66 0 4 55 4 4 2222222222 66 4 4 2222 2 888 99999999999999999999 0 0000 0 66 0 1 999 1 66666 2 111 8888 44444444 6 8 8 33 3 0 999999999 0 0 2 111 4444 0 0 3 22 2222222222222222222222222222222222222222222 9 33 22 2 0000000 5 0 8 8 3 99 8 6 8 3 0 0 0 8 999999999999999 00 44 2 77777 0 2 7 22222222222 0 0 33 3 3 33 0 0 0 3 3 33 0 0 33 0 3 3 3 777 666 888888888888888 22 0 0 00 666 0 66666 5 4 5 6666 7 3 7 1111 2 44 5 0 88 77 5 2222 0 6 5 333 55 4 0 5 0 7777777777 3 0 0 6 6666666666666666 6 6 222222 6666666666666666666666666666666666666666666666666666666 0 5 0000000000000000 444 7 1 7 9999999999999999999999999 3 44 7 7777777 555 00 7 7 00000 3 6 000 8888888888888888 4 5 0 2 77777 444 66 0 0 666666666666666666666666666 77 5 000 3 5 55 7 88888888888 22222 5 0 5 666 3 33 88888888 9 88 88888888888888888888888888888888888888888888888888888888888888888888 33 33 2222222222222 7 666 2 333 99999999 3 444444444 88 88 222 6 555 6 55 444444444444444444 7 1111111 3 3 3 5 0 222222222222222222222222 0 0 5 77 5 5555555555555555 6 5 5 11 6 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 000 5 5
lowQualScore : . .. . . .. . . .......... .. . . .... . ... .................... . .... . .. . . ... . ..... . ... .... ........ . . . .. . . ......... . . . ... .... . . . .. ........................................... . .. .. . ....... . . . . . .. . . . . . . . . ............... .. .. . ..... . . . ........... . . .. . . .. . . . . . .. . . .. . . . . ... ... ............... .. . . .. ... . ..... . . . .... . . . .... . .. . . .. .. . .... . . . ... .. . . . . .......... . . . . ................ . . ...... ....................................................... . . ................ ... . . . ......................... . .. . ....... ... .. . . ..... . . ... ................ . . . . ..... ... .. . . ........................... .. . ... . . .. . ........... ..... . . . ... . .. ........ . .. .................................................................... .. .. ............. . ... . ... ........ . ......... .. .. ... . ... . .. .................. . ....... . . . . . ........................ . . . .. . ................ . . . .. . ..................................................................................................................... . ... . .
lowQualScore : 4 77 4 0 55 0 0 3333333333 00 0 0 5555 0 222 88888888888888888888 1 6666 4 99 1 7 777 0 00000 5 777 8888 55555555 7 6 0 88 5 8 555555555 0 0 5 000 8888 0 0 2 00 8888888888888888888888888888888888888888888 8 88 55 5 8888888 0 0 0 0 0 00 0 0 0 2 8 0 8 0 555555555555555 77 00 5 00000 0 5 0 55555555555 0 0 88 2 2 22 0 0 0 2 2 88 0 0 88 0 2 2 2 555 555 888888888888888 55 0 0 55 222 0 88888 0 7 0 0000 3 3 3 3333 5 00 5 0 55 55 0 0000 0 0 5 555 00 0 0 5 0 0000000000 0 5 0 0 0000000000000000 0 0 000000 0000000000000000000000000000000000000000000000000000000 0 5 7777777777777777 000 3 7 3 7777777777777777777777777 3 33 3 7777777 777 00 3 3 77777 3 7 555 0000000000000000 0 5 0 5 00000 555 00 0 5 555555555555555555555555555 55 5 000 0 0 00 5 00000000000 00000 0 0 0 555 0 00 55555555 0 33 88888888888888888888888888888888888888888888888888888888888888888888 22 88 6666666666666 3 000 3 000 00000000 3 333333333 00 33 555 7 777 7 00 333333333333333333 0 3333333 3 3 3 0 0 555555555555555555555555 0 0 0 55 5 0000000000000000 0 0 0 00 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 0 0
consensus : GCTCCAAGG-GCGAAAAATCG-GCC--C-C-ATCTCGGAAANAT-GAA-CCA-TTTTTT-CCTGA----ATG-T-T-GCTA---TGGGATGTC--TGT--GTTTC----TTAAAA--AATAA-C-ACCAAGT-AG--TCCAGG---GAAATTTAAATCTG-GACNGA-AAA-TTAAGGA-TAAA-GTTGGG--AGCNCTCCGCGN----T--CAGAAA-CGTT-A-GA-A--ATACG-CTTT-ATT-ACGTTAT--CC-G--------ATAA--CACA-TTTAC--TTTCGAGACG-TACTGTTTAATGATATTAGC-TGGAGATTACTCGA--T-C--AGAAACA-TAAAAAGC-AAATTT-TCTGT-TT-GTACAAAGGCTCCC-TGGTTACAGC-AGAATTATCC-TA-TGGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGNCGTTG-GT-CC-ACAGAACGCAATGACGGTCTAA-TGCAA-CC-ATATTTCGAAAA-TG-CAC-TCA-TATTTTTACAAA--GTTATTAAT-G-TTT-ATT-TCTCTATTTTTCAT--TCTCA-TTAATTA-T-T----AC---ACCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAA-CCACAAACAATTTTTCCTTTGGATTC-GATCGAGCAAAANTGTNACACAATTTAAAGCAGAAAATATTTACCGGTACGTT-TACTACAAAGAGAGAGGATTCGCTT--GAANATAAACTTGTTTACTTTCCACCTNNAGCAACCNANATGCCNTCG-TTTATAAATACCTCCTCACGTCA--AATTGTAAA-TCGTAATGCTTTCTTTTTATCGAATAAA--GTTGCATATTCAAGAAAGTAANAAATAATNATCAATTATTATAAATCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TAC--NA-C-GTAG-TCTACAA-A-TACGC-GATATGTTTGACT-T--G---TTT-CAGTCA---TCTC-ACTCGCGTCACGTGTTAATT-CA-TTTATAGTTC--TTGAGT-GTGTGTATGTGGGTGGGGGTTACTCC-TATATTTCTTCCACCAAGAGTGCCAAGAGTTGTGC---GCGCTNAATTAAANTGCTGTNTAGTGANGTTTTCTTTTATGACAAGCGGNGGATAATCCTTTGCCTTTGCGTTTTGCACNCCCCCCCTATCTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTTTCTTCTCACATGTAACA-ATGAGAGTANNTTGGTGATACTTACGAGANNTATCAGTTATATAATATGTAACTTNNTAAAAAAAAAAAATT--ACATTTCACTCT--CCCG-TAC-TT-ACG----TATAAT-TACCTTGAA-ATTACGACTG---AGTANATA-TCTCGTGAT-AATGGTC--GTGTGATAC-TGCATTCTG--ATGCTCTCNA-ATTCCATTTCCATTATTGTT-TCGA-A-TGCTTT-TTAAATC-ACAG-CCTATAGTTCTAAGTA--CACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTT-A-ACA--TCCAGGGA-GAAAACCCTGATGGAT-ATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGC-GCATTCATTCCGGGTGTTGATTGTATAAATGTCTTCGGCGACCTGATTATTGCTTAAATTGTAGACCTCATGGTAGGCCTGTATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
Reference ( gi|1 ) : GCTCCAAGG-GCAAAAAATCG-GCC--C-C-ATCTCGGGAATAT-GAA-TTA-TTTTTT-CCTGA----ATG-T-T-GCTA---TGGGATGTC-CTGT--GTTTC----TTAAAA--AATAAAT-ACCAAGT-AG--TCCAGG---GAAATTTAAATCTGCGACGGATAAA-TTAAGGATTAAA-GTTGGG--AGCACTCTACGA----A--CAG-AA-CGTT-A-GA-A--ATACG-CTTT-ATT-GCGTTAT-----G--------ATAA--CACACTTTAC--TT-CGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-C--AGACACA-TAAAAAGC-AAATTT-TTTG--TT-GTACAAAGGC-CCC-TGGTTACAGCTAGAATTATCC-TATTGGTTTGTCATAC-ATGTACA-TACATGTATCCCCATCGGCGTTG-GT-TC-ACAGAATGCAATGCGCGTCGAA-TGCAA-C--ATATTTCGAAAA-TG-CAC-TCA-TATTTTTACAAA--GTTATTAAT-G-TT--ATT-TCTCTATTTTTCA---TCTCA-TTAATTG-GAT----AC---ACCCA-CCT-GA-TGTCTCTCTC--ATC-AAATA-TCGATCAAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTT-AAGCAGAAAATA--TACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAAT-AACTTGTTTACTTT-CACTT--------CAATATGCCGTCGTTTTATAGATA-CTCTATACAACAGCGATTATAGATTCGT-ATGCTTTCTTTTT---GAATGAAATATCGCATATTTA--AA-GT-AT------TTAT-AA--------AATCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTTATAC--CA-C-GTAGATCTACAA-A-TACGCCGATATGTTTGACTAT--GTCTTTTGCATTCA---TCTC-ACTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGT-GTGTGTATGTGGGTGGGGGTTGCTCC-TAT-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATT-AACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAATT----GCCTTAG-----TGCA-ACCCCCCCTATCTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATAC-TACGAGAGA-ATCAGTCATA-GATATGTAAATAAACAGAAAAAAAGAATT--ACATTTACCTCTTACTCG-TAC-T--ACGAT--TA-AATGTACCACGAAGATTACGCGAG---AGTATATA-TATCGTGAT-AATGGTC--GTGTGATACATGTATTCTG-GATGCTCTCCA-ATTCTATTTCCATT-TTGTTGTCGA-A-TGCTTT-TTAATTCAACAGGCCTATAGTCCTAAGTA--CAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCAAATA--TCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-TAA------------------------ACTGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|9 : GCTCCA-GG-GCGAAAA-TCG--CC--C-C-ATCTCGGAAAT---GAA-CTA-TTTTTT-CTTGA----ATG-T-T-TC-A---TGG-ATGTC-------GTT-C----TTAAAA--AATAA-C-ACCAAGT-AGGATCCAGG---AAA---TAAATT---GACG---AAA-TTAAGGCATAAA-GTTGGG--AGCCCTCCACGT----T--CAA-AA-C-TT-ATGA-AATATACG-CTTT-A-T-ACGTTAT-----
gi|12 : tagGCTCAAAGG-GCGAAAA-TCG-GCC--C-C-ATCTCGGAA--AT-GAA-ACA-TTTTTT-CTTGA----ATGTT-T-GCTA---T-GGATG----TAT--GTTTC----TTTAAA--AGT---T-----AGT-AG--TCCAGG---GAAA-TTAAATCTG-GA-AGA-AAA-TTAAGa
gi|17 : tagggGCTCCCAGG-GCGAAAA-TCG-GCC--C-C-ATCTCGGAAAT-T--AA-CCA-TTTTTT-CCTGA----ATG-T-TAGCTA---TGG
gi|19 : taggGTTCTAAGG-GCGAAAA-TCG-GCC--C-CTCTCTCAGAAATA---AA-CCA-TTTTTT--CTGA----ATA-T-T-
gi|2 : ggCTCCAAGC-G---AAAATCG-GCC--C-C-ATCTTCGGAATG--AAA-CTA-TTTTTT-CCTGA----ATG-T-TTGCTA---TGG-AT-TC----T--GTTTC----TTAAAA--AATTAAC-ACCAA-T--G--TCCAGG---GAAATT--AATCTG-GACTGA--AA-TTAAGGA--AAATGGTGGT--AGCACTCTCCAG----CGTCAG-AAACGTT-A-GACA--ATACG-CTTT-ATTTACGTTATCACC-G--------ATAA--CACA-TTTAC--TTTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGATCCCT-GA--TTC--AGAAACA-TAAAAAGC-ACATTT-TTT---TT-GTACAAAGGC-CCC-TG-TTA--GC-AGAATTACC-------------------ATGTTCACTACAT-TATCCCCATCGGCGTTG-GT-CC-A-AGAATGCA-TGACAGTC--A-TGCAA-CC-ATTTTCCGAAAAATG-CGCCTCA-TATTT--ACAAA--GTTATTAAT-G-TTT-ATT-TCTC-ATTTT-CA---TCTC--TTAATTA-T-T----AC---ACCCA-CCT-GA-TGTCTCTCT---ATC-AAATA-T--GTCAAA-CCACAAACAATTT----TTTGGATTC-G-TCG---AAAAGTGTA-CACAATTTAAAGCAG--AATA--TACCGGTACGTT-TAC-ACAAAGAGAG-GGA-TCGCTT--GAATAT-AACTTG-TTACTTTCCACTTAGAA----CTAGATGCCATCG-TTTATAAATACCTCCTCACGTCA--AATTGTAAA-TCGTAATGCTTTCTTTTTATCGAATAAA--GTTACATATTCAAGAA-GTAATAAATAATTATCAA--------AATCACTAACCAATATA-TAC-ACATCATCACTGTGGCGGATTT-TAC--AA-C-GT--ATGTACAATA-T-CGCGTATATCTTT-----T--GACGTT--CAGTTA---TCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT--TGTGTATGTGGGTGGGGGTTACTCTATAC-TTTCTTCC---AAGAGTGT---AAGTT-T-----GCGCTTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT--TC----GCTTTTGCGTTTTGCACCCCCCCCCTA-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGATT-ATCAGTTATA--ATATGTAATTTAA---AAAAAAATAATA--ACATTTCACTCT--CCCG-TACTT--ACACA--TATAAT-TACT-TGAACATTA---GAGTAAAGTAT----TCTCGTGATCAATGGGT--GTGTGATA-------TCTGCAATACTCTCAACATTC--TTTTCATTATTGTT-TTGACA-TGCTTT-TTAAATCACCCG--CTATAGTTCTAAGTAACCA---TACGATCCAC-CTACTGCAT-CG------AGTTTATTAACGTATTTAATACA--TCTAGG----AAAAACCTGATGGAT-ATAAT-ATTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGC-GCATTCATTCCGGGTGTT-ATTGTATAAATGTC-TCGGTGACCTGATTATTGC-----TTGTAGACTTCATGGTA-GCCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|4 : CTCCAAGGCGCGAAAA-TCG-GCC--C-C-ATCTCGGA---AT-GAACTTA-TTTTTT-CTTGA----ATGTT-T-TCTA---T-GGATGTC----T--GTTTC----TTAAAA--AATAACTAACCAAGT-AGA-TCCA-G---GAAATTT-AATCTG-GAC--AAAAA-TTAAGGA-TATA-GTTGGGGAAGCTTCCTGCCATTCTT--CAGAAA-CGTT-A-GA-A--ATATA-CTTTAATT-ACGTTATATCCGG--------TTAA--CA-A--TTACTATT-CG----GATACTGTTT-ATGATATTAGC-TGGAGA-TACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTGT-TT-GTACAAAGGCTCCC-TGGT--CAGC-AGAA-TATCC-TA-TGGTCTGTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCC-CC-ACAGAATGC-ATG-ACATCTAA-AGCAACC--ATATTTTCAAAA-TG-CAC-TCA-TA---TTACAAA--GTTATTAAT-GTTT--ATTCTTCCTA--TTTCATGTTGTCA-TTAATTA-T-T----ACATTATCCATCCTCTA-TGT-TCTCTCAAATC-AAATATTCAGTCAAA
gi|10 : CTTTAAAG-GTGAAAA-TCA-GCC--C-C-ATCT---AAAAAT-GAA-TCA-CATTTC-TCTGA----ATG-TAT-GCTA----AGGTTG----TGT--ATTTC----TTAAAA--Aacaca
gi|6 : CCAGGG-GAAAATGAGCGAGACGGC-C-ATCTTACGAAAAT-GAA-GTAGTTTTTTGCCTGAGCTGATT-T-A-GCTAAAATAG-ATGTTTCTG---ATTTC----TTAAAA--A-TAA-C-ACAAGGTTAG--TCCAGG---GAAAT--AAATCTG-GACCGA-AAA-TTAAGGACTTAG-ATTGGG--AGCACTCCACGT----T--TAGAAA-CGTTGA-AA-A--ATACGCCTTT-ATT-GCGTTAT-----ATACATAATGTAA--CACA-TTCGT--TT-TGAGAC--TACTGTTTAATGATATAAAC-TGGAGA-TACTCGAATT-C--AGAAACATTAAAAAGCAAAATTT-TCTGTTTT-GTACAAAGGC-CCCTTGGTTACAGC-AGAATTGCCCGTA-TGG-TTGTCATcaacacnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|11 : tgAAAG-GCTGAAAATCA-GCC--CAC-ATCT---AAAAATCGAA-TCA-CATGTC-TCTGAC---ATG-T-A-TCTA----AGGTTGTG-ATAT---TTTC----TT-AAA--AACAAACAACCAAAT-TG--TTC--GTCTGACA---AAATTTACGACAGAAAAATTTAAGGA-TAAA-GTT
gi|16 : AAATCG-GCC--C-C-ATCTC--GAA-AT-GAA-TTA--TTTTT-CCTG-----ATGCT-T-GCTA---T-GGATGT--CTGTAAGTTGCATATTTAAAAGTAATAA
gi|5 : ggtaggggctcc--------ATAAACCACA-TTTAC--TTTCGAGATA----TGTTATATGATATTAG--CGGAGAT-ACTCGA----C--AGAAACA-TAAAAAGC-AAATGT-TCTG--TT-TTACAAAGGCTCTC-TGATTACAGC-AGAATTATCC-TA-TGG-TTGTCATGCAATGTAC---ACATGTATTCCCATCGTCGTTG-GTCCC-ACAGAA-GCAAGACAGTTCTAATTGCAA-CCGATA-TTCG-AAA-TGCCAC-TCAGTATTTTTACAAA--ATTATTAATGG-TT--ATT-TCTATATTCTTCAT--TCTCA--TAATT---ATTACCAC----CCCA-CCT-GA-TG--TCTCTC--ATC-AAATA-TCG-TCAAAACCAC-AACAATTTTTCTTCTGGA-TT-GATCAAGC-AAATTGTTACAC-ATTT-AAGCAGAAAATATTTA-CGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTT-CACCTTTAGCAACTAATATGCCCTCGt
gi|18 : tataccgtAAGC-AAATTT-TCTG--TTTGTACAAAGGC-CTC-TGGTTACAGC-AGAATTATCC-TA-TGGTTgattgagaatttactaaacccattttcac
gi|8 : aattCCCCATCGCCGTTG-GT-CCCACAGAACGT--TGACAGTCTAA-TGCAA-CC-ATATTTCGAAA--TG-CAC-TCACTATTTTTACAAAAAGTTATTAAA-G-TTTAATT-TCTCTATTTGTCA---TCTTACTTAATTATGCT----AC---ACCCA--CT-GACTG--TCTCTC--ATCTAAATATTCG--CAAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAAgt
gi|7 : TTGCATATTTA--AAAGT-AA------TAAT-AATTATTATAAATCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TAC--CAGC-GTAG-TCTACAA-AATACGC-GATATGTTTGACTTTCAGT-TTTTGCATTCAAAATCTC-ACTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTGGTG-GTATGTGGGTGGGGG-TACTCC-TATATTTCcaa
gi|3 : gTTTACACGTTA-CAGTAG-TCTACAA---TACGC-GAT--GTTTGACT---------TT-CAGTC----TCTC-ACTCGCGTCACATGT-AATTGCA--TTATAGTTCCTTTCGGT-GTGTGT-TGTGGGTGGG--TT--CCC-TATATTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCTAA-TT-AACTGTTGTATAGTGAAGTTTTT--TTATAA-AAGCGATGGA-AATTCTTTGCCTT---------CA-ACCCCC--TATCTAAATCC-CTCATCAAT-GACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATAC-TAC-AGAGATATCAGT-ATATAATATGTAACTTTTTAAAAAAAAAACATTTCACATCT--CTCTT---CGCTAC-TT-ACG----CA-A---TACCTTGAA-ATTACGACTG---AGT-TAAACTCTCGTGA--AATGGTCCAGTGTGATTC-TGCATT-------GC-CTCTC-ATTATATTTCCATTATTGTTTTCGA-AATGCTTTCTTAATC--ACAG-CCTATAG-CCTAAGTA--CACCATACAATCAACCTTACTACATGCG--TGAAAGTTTATTAACGTATTT-------------AAA-AAAAACCCTGATGGAT-ATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTA-GGCCTAATAA-TAA------------------------ACTGC-GCATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|14 : AAAAAATT--ACATTTCACTCT--CTCG-TAC-TTAACGATAATATAAT-TACCTTGGA-ATTATGACTG---ACTAAATA-CCTCGTGAT-AATGGTC--GTGTGATATCTGCAT
gi|15 : G---AGTAAATA-TCTCGTGAT-AATGGTC--GTATGATA-------TCTG-CATGCTCTCCA-ATTCCATTTCTA---TTATTG-----------TT-TTAAATC-ACA-GCCTATAGTTCTAAGTA--C
gi|13 : cG-TCAACTT-ACTGCATGCG--TGAAAGTGTATCAACGTATTTCAAATACATCCAGGGATGAAAACCCTGATGGATA----CAATTGTATAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAA
Alignments
lowQualScore : 111111111111111111111111111111111 111111111111111111111111
lowQualScore : 1 11 1111 22222222222222222 11 111 11 11 111 222222 11 4444444444444 11 444 11 1111 11 1 11 1 111 11 1 11 11 11 111 111 11 11111 1 11 22 22 2 22 1 2 2 11 2 5555555555 1 1 22 2 1 222 11 111111111111111111111111111111111 11 1 111 11 1 11 1 1 1 77777777777777 2222 1 1 11 111 1 11 33 111111 33333333 1 22 11 2 5555555 6666666666666 11 1 1 1 33 11 222 1 22 222 11 1 555555555 11 2 11111 11 2 5555555 1 1 22222222222 1 1 11 44444444444444444444 1 11 111 1 2 888888888888888888888888 1 2 33 44444444 333 1 1 5555555555555555555555555555555555555555555555555555555555 55555555555 2 222
lowQualScore : 4 9 3 3 44 1 55 3 0 3 3 3 1111 7 3 888 88888 44444444444444444 9999 66 8 66 5 77 1 33 000 77 8 1 777 55 5 77 6 55 11 1 444 222222 0 8 8 8 11 8 88 8 9999999999999 11 8 88 0 111 0 88 44 9999 11 8 6 6 99 8 1 6 6 6 666 0 9 33 55 1 8 6 9 777 0 77 8 5 8 8 3 0 88 8 8 6 0 0 11 5 8 8 0 6 11 999 99 8 444 8 8 8 8 999 99 8 66666 8 6 6 77 0 00 3 2 2 9 1 11 7 3 7 22 6 3 3 7 3 88 1 7 7 7 3 0 4444444444 1 1 3 5 4 4 77 0 5 111 88 000000000000000000000000000000000 44 7 0 444 22 0 33 3 0 0 3 0 00000000000000 2 0000 0 99 2 3 3 0 33 3 777 55 0 3 2 3 7 2 33 00 333333 44444444 4 7 88 3 44 88 66 0 3 222 4444444 4444444444444 7 6 6 88 5 6 7 3 0 0 00 22 6 44 6 222 2 77 3 333 1 3 33 3 0 000000000 33 2 0 11111 8 1 8 0 8 88 11 4 8 2222222 3 1 0 0 3 77777777777 0 0 7 2 6 7 6 3 2 33 3 77777777777777777777 2 0 22 111 0 6 3 222222222222222222222222 3 0 3 6 00 7 00000000 777 6 6 0 2 5 3 5 8888888888888888888888888888888888888888888888888888888888 77777777777 999 2 0 2 000 2 2
lowQualScore : . . . . .. . .. . . . . . .... . . ... ..... ................. .... .. . .. . .. . .. ... .. . . ... .. . .. . .. .. . ... ...... . . . . .. . .. . ............. .. . .. . ... . .. .. .... .. . . . .. . . . . . ... . . .. .. . . . . ... . .. . . . . . . .. . . . . . .. . . . . . .. ... .. . ... . . . . ... .. . ..... . . . .. . .. . . . . . .. . . . .. . . . . . .. . . . . . . .......... . . . . . . .. . . ... .. ................................. .. . . ... .. . .. . . . . . .............. . .... . .. . . . . .. . ... .. . . . . . . .. .. ...... ........ . . .. . .. .. .. . . ... ....... ............. . . . .. . . . . . . .. .. . .. . ... . .. . ... . . .. . . ......... .. . . ..... . . . . . .. .. . . ....... . . . . . ........... . . . . . . . . . .. . .................... . . .. ... . . . ........................ . . . . .. . ........ ... . . . . . . . .......................................................... ........... ... . . . ... . .
lowQualScore : 0 9 6 6 22 4 11 6 4 6 6 6 4444 3 6 888 77777 88888888888888888 4444 11 9 99 0 99 7 66 000 44 4 4 999 33 7 99 7 88 00 0 000 000000 8 0 0 0 00 0 88 0 5555555555555 00 0 88 8 222 8 88 44 8888 00 0 7 7 88 0 0 7 7 7 333 2 2 22 88 0 0 0 6 000 8 66 0 6 0 0 8 8 88 0 0 0 8 8 00 6 0 0 8 0 44 666 00 0 000 0 0 0 0 444 00 0 00000 0 0 0 00 8 55 2 0 5 2 0 33 3 7 3 77 7 3 7 3 7 33 0 3 3 3 3 7 3333333333 0 0 3 0 0 0 55 0 5 000 33 777777777777777777777777777777777 77 3 0 222 55 0 22 2 0 0 2 0 00000000000000 5 8888 0 55 0 2 2 0 22 2 000 88 0 2 5 2 0 5 22 00 000000 77777777 0 3 33 7 77 33 00 7 3 333 7777777 3333333333333 3 7 7 33 3 0 3 3 7 7 33 00 7 77 7 333 3 77 7 777 2 5 88 2 0 000000000 22 5 0 88888 0 0 0 8 0 88 00 0 0 2222222 2 0 0 5 2 88888888888 0 0 0 5 7 3 5 2 5 88 2 55555555555555555555 5 0 55 000 0 7 7 777777777777777777777777 3 7 3 7 77 3 77777777 777 7 7 7 5 0 0 5 0000000000000000000000000000000000000000000000000000000000 00000000000 555 5 0 5 000 5 5
consensus : GCTCCAAGG-GCGAAAA-TCGGCCC-C-ATCT-CGGAAAAAT-GAACC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGT-CTGT--G----TTTC----TTAAAA--AAT-AAC--A-CCAAG--TAG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--TAAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACG-CTTTA-TT-ACGTTATA--C--CG-A---TAA--CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TA-TGGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTG-GTCCCACAGAATGCAATGACA-GT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTC-AAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTT-AAGCAGAAAATAT-TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAATAAACTTGTTTACTTT-CACTT--AGC---CAATATGCCGTCG-TTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAA--GTCGCATATTTAA-AAAGTAA---ATAAT----AA---TTAT-AAATCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTAC-AA-ATACG-CG-ATATGTTT-GACT-T---GTTTTT--CANTC---ATCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCT-AATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATAA----TCGCCTT-G-----TGCA--CCCCCCCTATCTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATACTTACGAGAGATATCAGTCATA-GATATGTAANTT--CAAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CG----TAT--AAT-TACCTTGAA-ATTACGACTGAGT-AAA-TAT-CTCGTGAT-AATGGTC--GTGTGATATC-TGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATC-ACA-GCCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGC--GTGAAAGTTTATTAACGTATTTCA-A-A--CATCCAGGGA-AAAAANCCTGATGGAT-ATAATAATTGTGTAGAAAATT-A-ATAAGTTCCAGGATAATG-TAAGGTAGGGCCTAATAA-TAA------------------------ACTGC-GCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Reference ( family-7502 ) : GCTCCAAGG-GCGAAAAATCGGCCC-C-ATCT-CGGAAANAT-GAACC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGT-CTGT--G----TTTC----TTAAAA--AAT-AAC--A-CCAAG--TAG--TCCA---GG-GAAATTTAAATCTG-GACNGA-AAA--TTAAGG-A--TAAAGTTGGG--AGCNCTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACG-CTTTA-TT-ACGTTAT---C--CG-A---TAA--CACA-TTTACT-TTCGAGAC-GTACTGTTTAATGATATTAGC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TA-TGGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGNCGTTG-GTCC-ACAGAACGCAATGACG-GT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTC-AAA-CCACAAACAATTTTTCCTTTGGATTC-GATCGAGCAAAANTGTNACACAATTTAAAGCAGAAAATATTTACCGGTACGTT-TACTACAAAGAGAGAGGATTCGCTT--GAANATAAACTTGTTTACTTTCCACCTNNAGCAACCNANATGCCNTCG-TTTATAAATACCTCCTCACGTCA--AATTGTAAA-TCGTAATGCTTTCTTTTTATCGAATAAA--GTTGCATATTCAAGAAAGTAANAAATAATNATCAATTATTAT-AAATCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTAC-AA-ATACG-CG-ATATGTTT-GACT-T---GTTT----CAGTC---ATCTCA-CTCGCGTCACGTGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCACCAAGAGTGCCAAGAGTTGTGC---GCGCTNAATTAAANTGCTGTNTAGTGANGTTTTCTTTTATGACAAGCGGNGGATAATCCTTTGCCTTTGCGTTTTGCACNCCCCCCCTATCTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTTTCTTCTCACATGTAACA-ATGAGAGTANNTTGGTGATACTTACGAGANNTATCAGTTATATAATATGTAACTTNNTAAAAAAAAAAAATTACATTTCACTCT--CCCGTACTTA-CG----TAT--AAT-TACCTTGAA-ATTACGACTGAGT-ANA-TAT-CTCGTGAT-AATGGTC--GTGTGATA-C-TGCATTCT-GATGCTCTCNA-ATTCCATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATC-ACA-GCCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGC--GTGAAAGTTTATTAACGTATTT---A-A--CATCCAGGGA-GAAAACCCTGATGGAT-ATAATAATTGTGTAGAAAATT-A-ATAAGTTCCAGGATAATG-TAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGC-GCATTCATTCCGGGTGTTGATTGTATAAATGTCTTCGGCGACCTGATTATTGCTTAAATTGTAGACCTCATGGTAGGCCTGTATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|1 : GCTCCAAGG-GCAAAAAATCGGCCC-C-ATCT-CGGGAATAT-GAATT-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTCCTGT--G----TTTC----TTAAAA--AATAAAT--A-CCAAG--TAG--TCCA---GG-GAAATTTAAATCTGCGACGGATAAA--TTAAGG-AT-TAAAGTTGGG--AGCACTCT---ACGAA----CAG-AACGTT-A-GA-A--ATACG-CTTTA-TT-GCGTTAT-------G-A---TAA--CACACTTTAC--TTCGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-CA--GACACA-TAAAAAGC-AAATTT-TTTG--TTGTACAAAGGC-CCCTGGTTACAGCTAGAATTATCC-TATTGGTTTGTCATAC-ATGTACA-TACATGTATCCCCATCGGCGTTG-GTTC-ACAGAATGCAATG-CGCGT-CGAAT-GCAA-C-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATG-TT-ATT-TCTCTATTTTTCA-TCTCA-TTAATTGGA-TA-C---A-CCCA-CCT-GA-TGTCTCTCTC--ATC-AAATA-TCGATC-AAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTT-AAGCAGAAAATA--TACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAAT-AACTTGTTTACTTT-CACTT--------CAATATGCCGTCGTTTTATAGATA-CTCTATACAACAGCGATTATAGATTCGT-ATGCTTTCTTTTT---GAATGAAATATCGCATATTT---AAAGT-----AT------------TTATAAAATCGCTAACCAATAT-ATACAACATCGTCACTGTGGCGGATTTATACCA-CGTAGATCTAC-AA-ATACGCCG-ATATGTTT-GACTAT---GTCTTTTGCATTC---ATCTCA-CTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTGCTCCTAT--TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATT-AACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAA----TTGCCTTAG-----TGCA-ACCCCCCCTATCTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATAC-TACGAGAGA-ATCAGTCATA-GATATGTAAATAAACAGAAAAAAAGAATTACATTTACCTCTTACTCGTAC-TA-CG-----ATTAAATGTACCACGAAGATTACGCGAGAGT-ATA-TAT-ATCGTGAT-AATGGTC--GTGTGATA-CATGTATTCTGGATGCTCTCCA-ATTCTATTTCCATT-TTGTTGT-CGA-A-TGCTTTTTAATTCAACAGGCCTATAGTCCTAAGTACAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCA-A-A--TATCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAATT-A-ATAAGTTCCAGGATAATG-TAAGGTAGGGCCTAATAA-TAA------------------------ACTGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|10 : CTTTAAAG-GTGAAAA-TCAGCCC-C-ATCT----AAAAAT-GAATC-A-CATTTC-TCTGA----ATG-TAT-G-CTA----AGGTTG---TGT--A----TTTC----TT-AAA--AAC-AAC--A-C
gi|11 : AAAG-GCTGAAAATCAGCCCAC-ATCT----AAAAATCGAATC-A-CATGTC-TCTGAC---ATG-T-A-T-CTA---AGG------TTGT--GATATTTTC----TTAAAA--ACA-AAC--AACCAAA--TTG--TTCGTCTGACAAAATTTA---C---GACAGA-AAAATTTAAGG-A--TAAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|12 : GCTCAAAGG-GCGAAAA-TCGGCCC-C-ATCT-CGGAA--AT-GAAAC-A-TTTTTT-CTTGA----ATGTT-T-G-CTA---T-GGATG---TAT--G----TTTC----TTTAAA--AGT----------TAG--TAG--TCCA---GG-GAAA-TTAAATCTG-GA-AGA-AAA--TTAAG
gi|13 : tagggTCAAC-TTACTGCATGC--GTGAAAGTGTATCAACGTATTTCAAATA--CATCCAGGGATGAAAACCCTGATGGAT-ACAAT---TGTATAGAAAATT-A-ATAAGTTCCAGGATAATG-TAA
gi|14 : gAAAAAATTACATTTCACTCT--CTCGTACTTAACGATAATAT--AAT-TACCTTGGA-ATTATGACTGACT-AAA-TAC-CTCGTGAT-AATGGTC--GTGTGATATC-TGCAT
gi|15 : GAGT-AAA-TAT-CTCGTGAT-AATGGTC--GTATGATATC-TGC-------ATGCTCTCCA-ATTCCATTTCTATTATTG---------------TTTTAAATC-ACA-GCCTATAGTTCTAAGTAC
gi|16 : cAAATCGGCCC-C-ATCT-CG---AAAT-GAATT-A--TTTTT-CCTG-----ATGCT-T-G-CTA---T-GGATGT-CTGTAAG----TTGCATATTTAAAAGTAAT-AA
gi|17 : ggtaggggctccGCTCCCAGG-GCGAAAA-TCGGCCC-C-ATCT-CGGAA--AT-TAACC-A-TTTTTT-CCTGA----ATG-T-TAG-CTA---TGGt
gi|18 : taggAAGC-AAATTT-TCTG-TTTGTACAAAGGC-CTCTGGTTACAGC-AGAATTATCC-TA-TGGTT
gi|19 : aattGTTCTAAGG-GCG-AAAATCGGCCC-CTCTCT-CAGAAATA---AACC-A-TTTTTT--CTGA----ATA-T-T-gt
gi|2 : ggCTCCAAG---CGAAAA-TCGGCCC-C-ATCTTCGGAATGA---AACT-A-TTTTTT-CCTGA----ATG-T-TTG-CTA---TGG-AT-T-CTGT--------TTC----TTAAAA--AATTAAC--A-CCAA---T-G--TCCA---GG-GAAATT--AATCTG-GACTGA-AA---TTAAGG-A--AAATGGTGGT--AGCACTCTCCAGCG-T----CAGAAACGTT-A-GACA--ATACG-CTTTA-TTTACGTTAT---CACCG-A---TAA--CACA-TTTACT-TTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGATCCCT-GA--TTCA--GAAACA-TAAAAAGC-ACATTT-TTT---TTGTACAAAGGC-CCCTG-TTA--GC-AGAATTACC-------------------ATGTTCACTACAT-TATCCCCATCGGCGTTG-GTCC-A-AGAATGCA-TGACA-GT-C--AT-GCAACC-ATTTTCCGAAAAATGC-GCCTCA-TATTT--AC--AAAGTTATTAATGTTT-ATT-TCTC-ATTTT-CAT-CTC--TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT--CTCTCT-ATC-AAATAT---GTC-AAA-CCACAAACAATTTTT----TGGATTC-G-TCGA---AAAGTGT-ACACAATTTAAAGCAGAA--TAT--ACCGGTACGTT-TAC-ACAAAGAGAG-GGAT-CGCTT--GAATATAA-CTTGTT-ACTTTCCACTTAGAAC----TAGATGCCATCG-TTTATAAATACCTCCTCACGTCA--AATTGTAAA-TCGTAATGCTTTCTTTTTATCGAATAAA--GTTACATATTCAAGAA-GTAATAAATAATTATCAA---------AATCACTAACCAATATA-TACA-CATCATCACTGTGGCGGATTT-TACAA-CGTA--TGTAC-AATAT-CG-CGTATATCTTTTGAC------GTT-----CAGTT---ATCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT-TGT-GTATGTGGGTGGGGGTTACTC-TATACTTTCTTCCA---AGAGTGT---AAGTT---T---GCGCTTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT------TCGCTTTTGCGTTTTGCACCCCCCCCCTA-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGAT-TATCAGTTATA--ATATGTAATTT---AAAAAAAAATAATAACATTTCACTCT--CCCGTACTTA-CACA--TAT--AAT-TAC-TTGAACATTA-----GAGT-AAAGTATTCTCGTGATCAATGGGT--GTGTGATATC-TGCA------ATACTCTCAACATTC--TTTTCATTATTGTT-T-TGACA-TGCTTTTTAAATC-ACC-CGCTATAGTTCTAAGTA-ACCATACGATCCACCT-ACTGCAT-C--G----AGTTTATTAACGTATTT---A-ATACATCTAGG----AAAAACCTGATGGAT-ATAATA-TTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGC-GCATTCATTCCGGGTGTT-ATTGTATAAATGTCT-CGGTGACCTGATTATTGCTT-----GTAGACTTCATGGTAG-CCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|3 : T-TACA---GTAG-TCTAC-AA--TACG-CG-AT--GTTT-GACT-T------T----CAGTC----TCTCA-CTCGCGTCACATGT-AATTGCA-TT-ATAGTTCCTTTCGGTGTGT-GT-TGTGGGTGGG--TT--CCCTATA-TTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCT-AATTAA-CTGTTGTATAGTGAAGTTTT--TTTATAA-AAGCGATGGA-AATTCTTTGCCTT---------CAA---CCCCCTATCTAAATCCC-TCATCAATG-ACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATACT-AC-AGAGATATCAGT-ATATAATATGTAACTTTTTAAAAAAAAAACATTTCACATCTCTCT--TCGCTACTTA-CG----CA----AT--ACCTTGAA-ATTACGACTGAGTTAAA-C-T-CTCGTGA--AATGGTCCAGTGTGATT-C-TGCATT------GC-CTCTC-ATTATATTTCCATTATTGTT-TTCGA-AATGCTTTCTTAATC-ACA-GCCTATAGC-CTAAGTACACCATACAATCAACCTTACTACATGC--GTGAAAGTTTATTAACGTATTT---A-A-----------A-AAAAACCCTGATGGAT-ATAATAATTGTGTAGAAAATT-A-ATAAGTTCCAGGATAATG-TAAGGTA-GGCCTAATAA-TAA------------------------ACTGC-GCATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|4 : tttacacgCTCCAAGGCGCGAAAA-TCGGCCC-C-ATCT-CGGAA---T-GAACTTA-TTTTTT-CTTGA----ATG-T-T-TTCTA---TGG-ATGT-CTGT--------TTC----TTAAAA--AAT-AACTAA-CCAAG--TAGA-TCCA---GG--AAATTTAA-TCTG-GACA-A-AAA--TTAAGG-A--TATAGTTGGGGAAGCTTCCT---GCCATTCTTCAGAAACGTT-A-GA-A--ATATA-CTTTAATT-ACGTTATAT-C--CG-G---TTA---ACA-ATTACTATTCG-GA---TACTGTTTA-TGATATTAGC-TGGAGAT-ACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTG-TTTGTACAAAGGCTCCCTGGT--CAGC-AGAAT-ATCC-TA-TGGTCTGTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCCCC-ACAGAATGC-ATGAC--AT-CTAAA-GCAACC-ATATTTTCAAAA-TGC-AC-TCA-TA---TTAC--AAAGTTATTAATGTTT-ATTCTTCCTATTTCATGTTGTCA-TTAATTAT--TA-CATTA-TCCATCCTCTA-TGT-TCTCTCAAATC-AAATATTCAGTC-AAA-ACACA
gi|5 : TATA--C--CGTA---TAAACCACA-TTTACT-TTCGAGA---TA-TGTTATATGATATTAGC--GGAGAT-ACTCGA----CA--GAAACA-TAAAAAGC-AAATGT-TCTG-TTT-TACAAAGGCTCTCTGATTACAGC-AGAATTATCC-TA-TGGTT-GTCATGCAATGTACA---CATGTATTCCCATCGTCGTTG-GTCCCACAGAA-GCAA-GACA-GTTCTAATTGCAACCGATATT-CGAAA--TGCCAC-TCAGTATTTTTAC--AAAATTATTAATGGTT-ATT-TCTATATTCTTCATTCTCA--TAATTAT--TACC---ACCCCA-CCT-GA-TG--TCTCTC--ATC-AAATATC--GTCAAAA-CCAC-AACAATTTTTCTTCTGGATT--GATCAAGC-AAATTGTTACAC-ATTT-AAGCAGAAAATATTTA-CGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTT-CACCTTTAGCAACTAATATGCCCTCG-
gi|6 : GA-GCGAGA---CGGCC----ATCT-TACGAAAAT-GAAGT-AGTTTTTTGCCTGAGCTGATT-T-A-G-CTAAAATAG-ATGT-TTCT--GA---TTTC----TTAAAA---AT-AAC--A--CAAGGTTAG--TCCA---GG-GAAA--TAAATCTG-GACCGA-AAA--TTAAGG-ACTTAGA-TTGGG--AGCACTCC---ACGTT----TAGAAACGTTGA-AA-A--ATACGCCTTTA-TT-GCGTTATATAC--AT-AATGTAA--CACA-TTCG-T-TTTGAGAC--TACTGTTTAATGATATAAAC-TGGAGA-TACTCGAATT-CA--GAAACATTAAAAAGCAAAATTT-TCTGTTTTGTACAAAGGCCCCTTGGTTACAGC-AGAATTGCCCGTA-TGG-TTGTCATgattgagaatttactaaacccattttcac
gi|7 : tgccaggggaaaat--GTTGCATATTTAA--AAGTAA----TAAT----AATTATTAT-AAATCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACCAGCGTAG-TCTACAAA-ATACG-CG-ATATGTTT-GACT-TTCAGTTTTTG-CATTCAAAATCTCA-CTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTG-GTGGTATGTGGGTGGGGG-TACTCCTATA-TTTC
gi|8 : CCCCATCGCCGTTG-GTCCCACAGAACGT--TGACA-GT-CTAAT-GCAACC-ATATTTCG-AAA-TGC-AC-TCACTATTTTTACAAAAAGTTATTAAAGTTTAATT-TCTCTATTTGTCA-TCTTACTTAATTATGCTA-C---A-CCCA--CT-GACTG--TCTCTC--ATCTAAATATTCG--C-AAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAA
gi|9 : GCTCCA-GG-GCGAAAA-TCG-CCC-C-ATCT-CGGAAA--T-GAACT-A-TTTTTT-CTTGA----ATG-T-T-T-C-A---TGG-ATGT-C-----G----TT-C----TTAAAA--AAT-AAC--A-CCAAG--TAGGATCCA---GG-AAA---TAAATT---GACG---AAA--TTAAGGCA--TAAAGTTGGG--AGCCCTCC---ACGTT----CA-AAAC-TT-ATGA-AATATACG-CTTTA--T-ACGTTAT---caa
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11111111 1111 22222222222222222 11 111 1111 11 111 222222 11 1111111 33333 222 11 1111 11 1 11 1 111 1 11 11 11 222 111 11 2222 1 22 11 1 2 1 1 22 11 2 1 444444444 2 1 11 1 1 222 111 22 444444444 11 1 11 1 111 11 11 1 1 1 111 66666666666666 2222 1 1 11 111 1 11 333 11111 333333 1 11 1 2222222 1 5555555 1 1 11 2 33 1 11 2 11 11 2 44444 11 33333333333333 11 2 11111 1111 11 3333333 111 22222222222 1 1 111 11111 2222 11 1 1 1 33333 00000000000000000000 1 1 11 11 1 1 22222 1 1 555555555555555555555555555555555555555555555555555555 2222 2222 1 222
lowQualScore : 4 3 3 11111111 3 6666 3 3 1111 7 3 888 88888 44444444444444444 9999 66 0 4 4 66 5 77 33 000 77 444 1 777 8888 77 6 1111 11 1 444 222222 0 8 8 8 11 8 88 8 3333333 11111 8 8 0 0 111 0 88 44 9999 11 8 6 6 6 8 1 6 6 6 666 0 3 33 55 0 3 777 8 5 8 8 3 0 88 8 8 6 0 0 11 88 8 0 6 11 88 0 99 222 8 8 8 8 999 99 8 5555 2 3 0 0 00 3 2 7 44 7 3 7 3 3 3 0 7 00 88 3 7 3 777777777 0 7 3 0 5 1 1 77 5 5 111 999 22 666666666 88 3 44 7 0 444 22 33 3 0 0 0 000 11111111111111 1 0000 0 88 3 3 0 33 3 777 55 0 3 2 3 7 2 33 000 22222 6 222222 7 1 3 7 55 3 1 4444444 3 3333333 3 6 3 6 6 88 6 33 7 3 88 1 6 3 6 44 44 3 1 88888 1 1 33 88888888888888 33 2 0 11111 8 0000 88 11 0 0000000 6 555 7 3 77777777777 0 0 7 2 6 7 99 2 777 77777 6 0 0000 1 33 3 0 0 0 6 33333 88888888888888888888 3 3 6 88 7 88 3 3 99999 6 6 2 5 1 5 444444444444444444444444444444444444444444444444444444 4444 4444 333 1 5 1 000 1 1
lowQualScore : . . . ........ . .... . . .... . . ... ..... ................. .... .. . . . .. . .. .. ... .. ... . ... .... .. . .... .. . ... ...... . . . . .. . .. . ....... ..... . . . . ... . .. .. .... .. . . . . . . . . . ... . . .. .. . . ... . . . . . . .. . . . . . .. .. . . . .. .. . .. ... . . . . ... .. . .... . . . . .. . . . .. . . . . . . . . .. .. . . . ......... . . . . . . . .. . . ... ... .. ......... .. . .. . . ... .. .. . . . . ... .............. . .... . .. . . . .. . ... .. . . . . . . .. ... ..... . ...... . . . . .. . . ....... . ....... . . . . . .. . .. . . .. . . . . .. .. . . ..... . . .. .............. .. . . ..... . .... .. .. . ....... . ... . . ........... . . . . . . .. . ... ..... . . .... . .. . . . . . ..... .................... . . . .. . .. . . ..... . . . . . . ...................................................... .... .... ... . . . ... . .
lowQualScore : 0 6 6 99999999 6 4444 6 6 4444 3 6 888 77777 88888888888888888 4444 11 8 4 4 99 0 44 66 000 44 333 4 999 4444 99 7 2222 00 0 000 000000 8 0 0 0 00 0 88 0 7777777 00000 0 0 8 8 000 8 88 44 8888 00 0 7 7 7 0 0 7 7 7 333 2 2 22 88 0 8 000 0 6 0 0 8 8 88 0 0 0 8 8 00 88 0 8 0 44 88 8 00 000 0 0 0 0 444 00 0 0000 5 2 8 8 55 2 5 3 77 3 3 3 7 3 3 7 3 00 33 7 3 3 777777777 7 3 7 0 0 0 0 55 5 5 000 000 77 000000000 33 3 77 3 0 222 55 22 2 0 0 0 222 00000000000000 0 8888 0 00 2 2 0 22 2 000 88 0 2 5 2 0 5 22 333 00000 7 000000 3 0 3 3 77 3 0 7777777 3 3333333 3 7 3 7 7 33 7 33 3 3 33 0 7 7 7 77 00 3 0 77777 2 0 88 22222222222222 22 5 0 88888 0 8888 88 00 8 7777777 5 888 0 2 88888888888 0 0 0 5 7 3 88 5 000 00000 5 2 5555 0 22 2 0 0 0 7 33333 33333333333333333333 3 3 7 33 3 33 3 3 77777 7 7 5 0 0 5 000000000000000000000000000000000000000000000000000000 5555 0000 000 0 0 0 000 0 0
consensus : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TAC---ACCC-A-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATAT-ACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAATAA-CTTGTTTACTTTC-AC--TTAG-A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAAAA-GTAA----AAT-ATTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTAC-AAATA-CGC-G-ATAT-GTTTGACT-T---GTCTTT--CANTC---ATCTC-ACTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC---GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATACT-ACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTT--A-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Reference ( family-7502 ) : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TAC---ACCC-A-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATATTACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAATAAACTTGTTTACTTTC-AC--TTAG---CCAATATGCCGTCGTTT-ATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAAAAAGTAA--ATAATAATTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTAC-AAATA-CGC-G-ATAT-GTTTGACT-T---GTTTTT--CANTC---ATCTC-ACTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATAATC---GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATACTTACGAGAGATATCAGT-CATAGATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTT--A-CG----TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
gi|1 : GCTCCAAGG-GCAAAAAATCGGCCC-CATCT-CGGGAATAT-GAA-TT-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTCCTGT--G----TTTC----TTAAAA--AAT-AAAT--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTGCGACGGATAAA--TTAAGG-A--TTAAAGTTGGG--AGCACTCT---ACGAA----CAGAA-CGTT-A-GA-A--ATACGC-TTTA-TT-GCGTTAT-----G-ATAA-----CACACTTTACT-T-CGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-CA--GACACA-TAAAAAGC-AAATTT-TTTG-TT-GTACAAAGGC-CCCTGGTTACAGCTAGAATTATCC-TATTGGTTTGTCATACA-TGTACA-TACATGTATCCCCATCGGCGTTGGTTC-ACAGAATGCAATGCGCGT-CGAAT-GCAAC--ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTT--ATT-TCTCTATTTTTCAT-CTCA-TTAATTGGA-TAC---ACCC-A-CCT-GA-TGTCTCTCTC--ATC-AAATAT-CGATCAAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTTAA-GCAGAAAATAT-ACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAATAA-CTTGTTTACTTTC-AC--TT------CAATATGCCGTCGTTTTATAGATAC-TCTATACAACAGCGATTATAGATTCGTA-TGCTTTCTTTTT---GAATGAAATATCGCATATTTAAA--GTA-------T--TTAT--AAAATCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTTATACCA-CGTAGATCTAC-AAATA-CGCCG-ATAT-GTTTGACTAT---GTCTTTTGCATTC---ATCTC-ACTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTGCTCCTAT--TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATTAACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAATT---GC-CTTAG-----TGCAACCCCCCCTAT-CTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATACT-ACGAGAGA-ATCAGT-CATAGATATGTAAATAAAC--AGAAAAAAAGAATTACATTTACCTCTTACTCGTACT---A-CGAT--TA-AATGTACCACGAAGATTACGCGAGAGT-ATA-TA-TATCGTGAT-AATGGTC--GTGTGATACATGTATTCTGGATGCTCTCCA-ATTCTATTTCCATT-TTGTTGT-CGA-A-TGCTTTTTAATTCAACAGGCCTATAGTCCTAAGTACAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCAA--ATATCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|10 : CTTTAAAG-GTGAAAA-TCAGCCC-CATCT----AAAAAT-GAA-TC-A-CATTTC-TCTGA----ATG-TAT-G-CTA----AGGTTG---TGT--A----TTTC----TT-AAA--AAC-AA-C--A-C
gi|11 : AAGG-CTGAAAA-TCAGCCCACATCT----AAAAATCGAA-TC-A-CATGTC-TCTGAC---ATG-T-A-T-CTA---AGG-----T-TGT--GATATTTTC----TTAAAA--ACA-AA-C--AACCAAAT-TG--TTCGTCTGACAAAATTTA---C---GACAGA-AAAATTTAAGG-A--T-AAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|12 : aGCTCAAAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-GAA-AC-A-TTTTTT-CTTGA----ATGTT-T-G-CTA---T-GGATG---TAT--G----TTTC----TTTAAA--AGT-----------TAGT-AG--TCCA---GG-GAAA-TTAAATCTG-GA-AGA-AAA--TTAAG
gi|13 : tagggTCAAC-TTACTGCATGCG--TGAAAGTGTATCAACGTATTTCAAATACATCCAGGGATGAAAACCCTGATGGAT----ACAATTGTATAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAA
gi|14 : gAAAAAATTACATTTCACTCT--CTCGTACTT--AACGATAATATAAT-TACCTTGGA-ATTATGACTGACT-AAA-TA-CCTCGTGAT-AATGGTC--GTGTGATATCTGCAT
gi|15 : GAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTATGATATCTGC-------ATGCTCTCCA-ATTCCATTTCTATTATTG---------------TTTTAAATCA-CAG-CCTATAGTTCTAAGTAC
gi|16 : cAAA-TCGGCCC-CATCT-CG---AAAT-GAA-TT-A--TTTTT-CCTG-----ATGCT-T-G-CTA---T-GGATGTC-TGTAAG----TTGCATATTTAAAAGTAAT-AA-
gi|17 : ggtaggggctccGCTCCCAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-TAA-CC-A-TTTTTT-CCTGA----ATG-T-TAG-CTA---TGGt
gi|18 : taggAAGC-AAATTT-TCTG-TTTGTACAAAGGC-CTCTGGTTACAGC-AGAATTATCC-TAT-GGTT
gi|19 : aattGTTCTAAGG-GCGAAAA-TCGGCCC-C-TCT-CTCAGAAAT-AAA-CC-A-TTTTTT--CTGA----ATA-T-T-gt
gi|2 : ggCTCCAAG---CGAAAA-TCGGCCC-CATCTTCGGAA---T-GAAACT-A-TTTTTT-CCTGA----ATG-T-TTG-CTA---TGG-AT-TC-TGT--------TTC----TTAAAA--AATTAA-C--A-CCAA-T--G--TCCA---GG-GAAATT--AATCTG-GACTGA-AA---TTAAGG-A--A-AATGGTGGT--AGCACTCTCCAGCG-T----CAGAAACGTT-A-GACA--ATACGC-TTTA-TTTACGTTATCA-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGATCCCT-GA--TTCA--GAAACA-TAAAAAGC-ACATTT-TTT---TTGTACAAAGGC-CCCTG-TTA--GC-AGAATTACC-------------------ATGTTCACTACAT-TATCCCCATCGGCGTTGGTCC-A-AGAATGCA-TGACAGT-C--AT-GCAACC-ATTTTCCGAAAAATGC-GCCTCA-TATTT--AC--AAAGTTATTAATGTTT-ATT-TCTC-ATTTT-CAT-CTC--TTAATTAT--TAC---ACCC-A-CCT-GA-TGT--CTCTCT-ATC-AAATAT---GTCAAACC-ACAAACAATTTTTT----GGATTC-G-TCGA---AAAGTGT-ACACAATTTAAAGCAGAA--TAT-ACCGGTACGTT-TAC-ACAAAGAGAG-GGAT-CGCTT--GAATATAA-CTTGTT-ACTTTCCAC--TTAGAA-CTAG-ATGCCATCGTTT-ATAAATACCTCCTCACGTCAA--ATTGTAAAT-CGTAATGCTTTCTTTTTATCGAATAAAGT--TACATATTCAAGAAGTAA--TAAATAATTATCAAAA-TCACTAACCAATAT-ATAC-ACATCATCACTGTGGCGGATTT-TACAA-CGTA--TGTAC--AATATCGC-GTATATCTTTTGAC------G---TT--CAGTT---ATCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT-TGT-GTATGTGGGTGGGGGTTACT-CTATACTTTCTTCC---AAGAGTGT---AAGTT-TGC---GC-TTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT--TC---GCTTTT-GCGTTTTGCA-CCCCCCCCCTACTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGAT-TATCAGT-TATA-ATATGTAATTT-----AAAAAAAAATAATAACATTTCACTCT--CCCGTACTTACA-CA----TATAAT-TA-CTTGAACATTA-----GAGT-AAAGTATTCTCGTGATCAATGGGT--GTGTGATATCTGCA------ATACTCTCAACATTC--TTTTCATTATTGTT-T-TGACA-TGCTTTTTAAATCA-CCC-GCTATAGTTCTAAGTA-ACCATACGATCCACC-TACTGCAT-CG------AGTTTATTAACGTATTTAAT--ACATCTAGG----AAAAACCTGATGGATA-TAAT-ATTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGCG-CATTCATTCCGGGTGTT-ATTGTATAAATGTC-TCGGTGACCTGATTATTGC-----TTGTAGACTTCATGGTA-GCCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|3 : T-TACA---GTAG-TCTAC-AA-TA-CGC-G-AT---GTTTGACT-T--------T--CAGTC----TCTC-ACTCGCGTCACATGT-AATTGCA-TT-ATAGTTCCTTTCGGTGTGT-GT-TGTGGGTGGG--TT--CCCTATA-TTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCTAATTAA-CTGTTGTATAGTGAAGTTTT--TTTATAA-AAGCGATGGAAATTCTTTGC-CTT---------CA-ACCCCC-TAT-CTAAATCCC-TCATCAATG-ACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATACT-AC-AGAGATATCAGTATATA-ATATGTAACTT--TTTAAAAAAAAAACATTTCACATCTCTCT--TCGCTACTT--A-CG----CA--AT--ACCTTGAA-ATTACGACTGAGTTAAA-C--TCTCGTGA--AATGGTCCAGTGTGAT-TCTGCATT----GC-CTCTC---ATTATATTTCCATTATTGTT-TTCGA-AATGCTTTCTTAATCA-CAG-CCTATAGC-CTAAGTACACCATACAATCAACCTTACTACATGCG--TGAAAGTTTATTAACGTATTT--A--A---------A-AAAAACCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGG-CCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|4 : tttacacgCTCCAAGGCGCGAAAA-TCGGCCC-CATCT-CGGAA---T-GAA-CTTA-TTTTTT-CTTGA----ATG-T-T-TTCTA---TGG-ATGTC-TGT--------TTC----TTAAAA--AAT-AA-CTAA-CCAAGT-AGA-TCCA---GG--AAATTTAA-TCTG-GACA-A-AAA--TTAAGG-A--T-ATAGTTGGGGAAGCTTCCT---GCCATTCTTCAGAAACGTT-A-GA-A--ATATAC-TTTAATT-ACGTTAT-ATCCG-GTTA------ACA-ATTACTATTCG-GA---TACTGTTTA-TGATATTAGC-TGGAGAT-ACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTG-TTTGTACAAAGGCTCCCTGGT--CAGC-AGAAT-ATCC-TAT-GGTCTGTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCCCCACAGAATGC-ATGACA-T-CTAAA-GCAACC-ATATTTTCAAAA-TGC-AC-TCA-TA---TTAC--AAAGTTATTAATGTTT-ATTCTTCCTATTTCATGTTGTCA-TTAATTAT--TACATTATCC-ATCCTCTA-TGT-TCTCTCAAATC-AAATATTCAGTCAAA
gi|5 : TAT-A-CCGTATAAAC---CACA-TTTACT-TTCGAGA---TA-TGTTATATGATATTAGC--GGAGAT-ACTCGA----CA--GAAACA-TAAAAAGC-AAATGT-TCTG-TTT-TACAAAGGCTCTCTGATTACAGC-AGAATTATCC-TAT-GGTT-GTCATGCAATGTACA---CATGTATTCCCATCGTCGTTGGTCCCACAGAA-GCAA-GACAGTTCTAATTGCAACCGATATT-CGAAA--TGCCAC-TCAGTATTTTTAC--AAAATTATTAATGGTT-ATT-TCTATATTCTTCATTCTCA-T-AATTAT--TACC--ACCCCA-CCT-GA-TGT--CTCTC--ATC-AAATATC--GTCAAAACCACAA-CAATTTTTCTTCTGGATT--GATCAAGCAAA-TTGTTACACA-TTTAA-GCAGAAAATATTTACGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTTC-ACCTTTAGCAACTAATATGCCCTCGacaca
gi|6 : GA-GCGAGA---CGGCC---ATCT-TACGAAAAT-GAA-GT-AGTTTTTTGCCTGAGCTGATT-T-A-G-CTAAAATAG-ATGTT-TCT--GA---TTTC----TTAAAA--A-T-AA-C--A-CAAGGTTAG--TCCA---GG-GAAAT--AAATCTG-GACCGA-AAA--TTAAGG-ACTT-AGA-TTGGG--AGCACTCC---ACGTT----TAGAAACGTTGA-AA-A--ATACGCCTTTA-TT-GCGTTAT-A-TAC-ATAATGTAACACA-TTCGTT-TT-GAGAC--TACTGTTTAATGATATAAAC-TGGAGA-TACTCGAATT-CA--GAAACATTAAAAAGCAAAATTT-TCTGTTTTGTACAAAGGCCCCTTGGTTACAGC-AGAATTGCCCGTAT-GG-TTGTCATgattgagaatttactaaacccattttcac
gi|7 : tgccaggggaaaatGT--TGCATATTTAAAA-GTAATAATAATTATTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACCAGCGTAG-TCTACAAAATA-CGC-G-ATAT-GTTTGACT-TTCAGTTTTTG-CATTCAAAATCTC-ACTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTG-GTGGTATGTGGGTGGGGG-TACTCCTATA-TTTC
gi|8 : CCCCATCGCCGTTGGTCCCACAGAACGT--TGACAGT-CTAAT-GCAACC-ATATTTCG-AAA-TGC-AC-TCACTATTTTTACAAAAAGTTATTAAAGTTTAATT-TCTCTATTTGTCA-TCTTACTTAATTATGCTAC---ACCC-A--CT-GACTG--TCTCTC--ATCTAAATATTCG--CAAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAA
gi|9 : GCTCCA-GG-GCGAAAA-TCG-CCC-CATCT-CGGAAA--T-GAA-CT-A-TTTTTT-CTTGA----ATG-T-T-T-C-A---TGG-ATGTC------G----TT-C----TTAAAA--AAT-AA-C--A-CCAAGT-AGGATCCA---GG-AAA---TAAATT---GACG---AAA--TTAAGGCA--T-AAAGTTGGG--AGCCCTCC---ACGTT----CA-AAAC-TT-ATGA-AATATACGC-TTTA--T-ACGTTAT-A-caa
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11111111 1111 22222222222222222 11 111 1111 11 111 222222 11 1111111 33333 222 11 1111 11 1 11 1 111 1 11 11 11 111 111 11 2222 1 22 11 1 11 1 1 22 11 1 1 3333333333 1 1 11 1 1 222 111 1 77777777777 11 1 2 1 111 11 1 11 1 1 3333333333333 2222 1 1 11 111 1 11 333 11111 333333 1 11 1 666666666666666666666 1 1 11 2 33 1 11 1 11 1 1 44444 11 1 2222222 11 2 11111 1111 11 3333333 111 22222222222 1 1 111 11111 2222 11 1 1 1 33333 00000000000000000000 1 1 11 11 1 1 22222 1 1 555555555555555555555555555555555555555555555555555555 2222 2222 1 222
lowQualScore : 4 3 3 11111111 3 6666 3 3 1111 7 3 888 88888 44444444444444444 9999 66 0 4 4 66 5 77 33 000 77 444 1 777 8888 77 6 1111 11 1 444 222222 0 8 8 8 11 8 88 8 3333333 11111 8 8 0 0 111 0 88 44 9999 11 8 6 6 6 8 1 6 6 6 666 0 3 33 55 0 3 777 8 5 8 8 3 0 88 8 8 6 0 0 11 88 8 0 6 11 999 99 8 444 8 8 8 8 999 99 8 5555 2 9 0 0 00 3 2 9 44 7 3 7 88 6 3 3 0 7 00 88 3 7 3 6666666666 7 3 5 5 1 1 77 5 5 111 999 3 7 77777777777 88 3 3 7 0 444 22 0 33 3 0 0 3 2 9999999999999 1 0000 0 88 3 3 0 33 3 777 55 0 3 2 3 7 2 33 000 22222 6 222222 7 1 3 7 55 3 1 444444444444444444444 3 6 3 6 6 88 6 33 7 3 88 1 6 3 6 44 3 3 1 88888 1 1 33 3 0 7777777 33 2 0 11111 8 0000 88 11 0 0000000 6 555 7 3 77777777777 0 0 7 2 6 7 99 2 777 77777 6 0 0000 1 33 3 0 0 0 6 33333 88888888888888888888 3 3 6 88 7 88 3 3 99999 6 6 2 5 1 5 444444444444444444444444444444444444444444444444444444 4444 4444 333 1 5 1 000 1 1
lowQualScore : . . . ........ . .... . . .... . . ... ..... ................. .... .. . . . .. . .. .. ... .. ... . ... .... .. . .... .. . ... ...... . . . . .. . .. . ....... ..... . . . . ... . .. .. .... .. . . . . . . . . . ... . . .. .. . . ... . . . . . . .. . . . . . .. .. . . . .. ... .. . ... . . . . ... .. . .... . . . . .. . . . .. . . . .. . . . . . .. .. . . . .......... . . . . . . .. . . ... ... . . ........... .. . . . . ... .. . .. . . . . . ............. . .... . .. . . . .. . ... .. . . . . . . .. ... ..... . ...... . . . . .. . . ..................... . . . . . .. . .. . . .. . . . . .. . . . ..... . . .. . . ....... .. . . ..... . .... .. .. . ....... . ... . . ........... . . . . . . .. . ... ..... . . .... . .. . . . . . ..... .................... . . . .. . .. . . ..... . . . . . . ...................................................... .... .... ... . . . ... . .
lowQualScore : 0 6 6 99999999 6 4444 6 6 4444 3 6 888 77777 88888888888888888 4444 11 8 4 4 99 0 44 66 000 44 333 4 999 4444 99 7 2222 00 0 000 000000 8 0 0 0 00 0 88 0 7777777 00000 0 0 8 8 000 8 88 44 8888 00 0 7 7 7 0 0 7 7 7 333 2 2 22 88 0 8 000 0 6 0 0 8 8 88 0 0 0 8 8 00 88 0 8 0 44 666 00 0 000 0 0 0 0 444 00 0 0000 5 8 8 8 55 2 5 2 77 3 3 3 33 7 3 3 7 3 00 33 3 3 3 7777777777 3 7 5 0 0 0 55 5 5 000 000 3 3 00000000000 33 3 7 3 0 222 55 0 22 2 0 0 2 5 5555555555555 0 8888 0 00 2 2 0 22 2 000 88 0 2 5 2 0 5 22 333 00000 7 000000 3 0 3 3 77 3 0 777777777777777777777 3 7 3 7 7 33 7 33 3 3 33 0 7 3 7 77 3 3 0 77777 2 0 88 2 0 5555555 22 5 0 88888 0 8888 88 00 8 7777777 5 888 0 2 88888888888 0 0 0 5 7 3 88 5 000 00000 5 2 5555 0 22 2 0 0 0 7 33333 33333333333333333333 3 3 7 33 3 33 3 3 77777 7 7 5 0 0 5 000000000000000000000000000000000000000000000000000000 5555 0000 000 0 0 0 000 0 0
consensus : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATA--AAT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTAC-AA-ATACGC-G-ATATGTTTGACT-T---GTCTTT--CANTC---ATCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Reference ( family-7502 ) : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAA----AAT-A-TTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTAC-AA-ATACGC-G-ATATGTTTGACT-T---GTCTTT--CANTC---ATCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
gi|1 : GCTCCAAGG-GCAAAAAATCGGCCC-CATCT-CGGGAATAT-GAA-TT-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTCCTGT--G----TTTC----TTAAAA--AAT-AAAT--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTGCGACGGATAAA--TTAAGG-A--TTAAAGTTGGG--AGCACTCT---ACGAA----CAGAA-CGTT-A-GA-A--ATACGC-TTTA-TT-GCGTTAT-----G-ATAA-----CACACTTTACT-T-CGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-CA--GACACA-TAAAAAGC-AAATTT-TTTG-TT-GTACAAAGGC-CCCTGGTTACAGCTAGAATTATCC-TATTGGTTTGTCATACA-TGTACA-TACATGTATCCCCATCGGCGTTGGTTC-ACAGAATGCAATGCGCGT-CGAAT-GCAAC--ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTT--ATT-TCTCTATTTTTCAT-CTCA-TTAATTGGA-TA-C---A-CCCA-CCT-GA-TGTCTCTCTC--ATC-AAATAT-CGATCAAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTTAA-GCAGAAAATA--TACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAAT-AACTTGTTTACTTTC-AC--TT-------CAATATGCCGTCGTTTTATAGATAC-TCTATACAACAGCGATTATAGATTCGTA-TGCTTTCTTTTT---GAATGAAATATCGCATATTTAA-A-GTA-------T---TTAT--AAAATCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTTATACCA-CGTAGATCTAC-AA-ATACGCCG-ATATGTTTGACTAT---GTCTTTTGCATTC---ATCTCA-CTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTGCTCCTAT--TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATTAACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAATT----GC-CTTAG-----TGCAACCCCCCCTAT-CTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATAC-TACGAGAGA-ATCAGT-CATAGATATGTAAATAAAC--AGAAAAAAAGAATTACATTTACCTCTTACTCGTACT-A-CGAT--TA-AATGTACCACGAAGATTACGCGAGAGT-ATA-TA-TATCGTGAT-AATGGTC--GTGTGATACATGTATTCTGGATGCTCTCCA-ATTCTATTTCCATT-TTGTTGT-CGA-A-TGCTTTTTAATTCAACAGGCCTATAGTCCTAAGTACAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCAA--ATATCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|10 : CTTTAAAG-GTGAAAA-TCAGCCC-CATCT----AAAAAT-GAA-TC-A-CATTTC-TCTGA----ATG-TAT-G-CTA----AGGTTG---TGT--A----TTTC----TT-AAA--AAC-AA-C--A-C
gi|11 : AAGG-CTGAAAA-TCAGCCCACATCT----AAAAATCGAA-TC-A-CATGTC-TCTGAC---ATG-T-A-T-CTA---AGG-----T-TGT--GATATTTTC----TTAAAA--ACA-AA-C--AACCAAAT-TG--TTCGTCTGACAAAATTTA---C---GACAGA-AAAATTTAAGG-A--T-AAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|12 : aGCTCAAAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-GAA-AC-A-TTTTTT-CTTGA----ATGTT-T-G-CTA---T-GGATG---TAT--G----TTTC----TTTAAA--AGT-----------TAGT-AG--TCCA---GG-GAAA-TTAAATCTG-GA-AGA-AAA--TTAAG
gi|13 : tagggTCAAC-TTACTGCATGCG--TGAAAGTGTATCAACGTATTTCAAATACATCCAGGGATGAAAACCCTGATGGAT----ACAATTGTATAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAA
gi|14 : gAAAAAATTACATTTCACTCT--CTCGTACTTAACGATAATATAAT-TACCTTGGA-ATTATGACTGACT-AAA-TA-CCTCGTGAT-AATGGTC--GTGTGATATCTGCAT
gi|15 : GAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTATGATATCTGC-------ATGCTCTCCA-ATTCCATTTCTATTATTG---------------TTTTAAATCA-CAG-CCTATAGTTCTAAGTAC
gi|16 : cAAA-TCGGCCC-CATCT-CG---AAAT-GAA-TT-A--TTTTT-CCTG-----ATGCT-T-G-CTA---T-GGATGTC-TGTAAG----TTGCATATTTAAAAGTAAT-AA-
gi|17 : ggtaggggctccGCTCCCAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-TAA-CC-A-TTTTTT-CCTGA----ATG-T-TAG-CTA---TGGt
gi|18 : taggAAGC-AAATTT-TCTG-TTTGTACAAAGGC-CTCTGGTTACAGC-AGAATTATCC-TAT-GGTT
gi|19 : aattGTTCTAAGG-GCGAAAA-TCGGCCC-C-TCT-CTCAGAAAT-AAA-CC-A-TTTTTT--CTGA----ATA-T-T-gt
gi|2 : ggCTCCAAG---CGAAAA-TCGGCCC-CATCTTCGGAA---T-GAAACT-A-TTTTTT-CCTGA----ATG-T-TTG-CTA---TGG-AT-TC-TGT--------TTC----TTAAAA--AATTAA-C--A-CCAA-T--G--TCCA---GG-GAAATT--AATCTG-GACTGA-AA---TTAAGG-A--A-AATGGTGGT--AGCACTCTCCAGCG-T----CAGAAACGTT-A-GACA--ATACGC-TTTA-TTTACGTTATCA-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGATCCCT-GA--TTCA--GAAACA-TAAAAAGC-ACATTT-TTT---TTGTACAAAGGC-CCCTG-TTA--GC-AGAATTACC-------------------ATGTTCACTACAT-TATCCCCATCGGCGTTGGTCC-A-AGAATGCA-TGACAGT-C--AT-GCAACC-ATTTTCCGAAAAATGC-GCCTCA-TATTT--AC--AAAGTTATTAATGTTT-ATT-TCTC-ATTTT-CAT-CTC--TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT--CTCTCT-ATC-AAATAT---GTCAAACC-ACAAACAATTTTTT----GGATTC-G-TCGA---AAAGTGT-ACACAATTTAAAGCAGAA--TA--TACCGGTACGTT-TAC-ACAAAGAGAG-GGAT-CGCTT--GAATAT-AACTTGTT-ACTTTCCAC--TTAG--AACTAG-ATGCCATCGTTT-ATAAATACCTCCTCACGTCAA--ATTGTAAAT-CGTAATGCTTTCTTTTTATCGAATAAAGT--TACATATTCAAGAAGTAATA--AAT-AATTATCAAAA-TCACTAACCAATATA-TACA-CATCATCACTGTGGCGGATTT-TACAA-CGTA--TGTAC-AATAT-CGC-GTATATCTTT-----T---GACGTT--CAGTT---ATCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT-TGT-GTATGTGGGTGGGGGTTACT-CTATACTTTCTTCC---AAGAGTGT---AAGTT-TGC---GC-TTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT--TC----GCTTTT-GCGTTTTGCA-CCCCCCCCCTACTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGAT-TATCAGT-TATA-ATATGTAATTT-----AAAAAAAAATAATAACATTTCACTCT--CCCGTACTTA-CACA--TATAAT-TA-CTTGAACATTA-----GAGT-AAAGTATTCTCGTGATCAATGGGT--GTGTGATATCTGCA------ATACTCTCAACATTC--TTTTCATTATTGTT-T-TGACA-TGCTTTTTAAATCA-CCC-GCTATAGTTCTAAGTA-ACCATACGATCCACC-TACTGCAT-CG------AGTTTATTAACGTATTTAAT--ACATCTAGG----AAAAACCTGATGGATA-TAAT-ATTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGCG-CATTCATTCCGGGTGTT-ATTGTATAAATGTC-TCGGTGACCTGATTATTGC-----TTGTAGACTTCATGGTA-GCCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|3 : T-TACA---GTAG-TCTAC-AA--TACGC-G-AT--GTTTGACT-T--------T--CAGTC----TCTCA-CTCGCGTCACATGT-AATTGCA-TT-ATAGTTCCTTTCGGTGTGT-GT-TGTGGGTGGG--TT--CCCTATA-TTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCTAATTAA-CTGTTGTATAGTGAAGTTTT--TTTATAA-AAGCGATGGAAA-TTCTTTGC-CTT---------CA-ACCCCC-TAT-CTAAATCCC-TCATCAATG-ACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATAC-TAC-AGAGATATCAGTATATA-ATATGTAACTT--TTTAAAAAAAAAACATTTCACATCTCTCT--TCGCTACTTA-CG------CAAT--ACCTTGAA-ATTACGACTGAGTTAAA-C--TCTCGTGA--AATGGTCCAGTGTGAT-TCTGCATT----GC-CTCTC---ATTATATTTCCATTATTGTT-TTCGA-AATGCTTTCTTAATCA-CAG-CCTATAGC-CTAAGTACACCATACAATCAACCTTACTACATGCG--TGAAAGTTTATTAACGTATTT--A--A---------A-AAAAACCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTA-GGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|4 : tttacacgCTCCAAGGCGCGAAAA-TCGGCCC-CATCT-CGGAA---T-GAA-CTTA-TTTTTT-CTTGA----ATG-T-T-TTCTA---TGG-ATGTC-TGT--------TTC----TTAAAA--AAT-AA-CTAA-CCAAGT-AGA-TCCA---GG--AAATTTAA-TCTG-GACA-A-AAA--TTAAGG-A--T-ATAGTTGGGGAAGCTTCCT---GCCATTCTTCAGAAACGTT-A-GA-A--ATATAC-TTTAATT-ACGTTAT-ATCCG-GTTA------ACA-ATTACTATTCG-GA---TACTGTTTA-TGATATTAGC-TGGAGAT-ACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTG-TTTGTACAAAGGCTCCCTGGT--CAGC-AGAAT-ATCC-TAT-GGTCTGTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCCCCACAGAATGC-ATGACA-T-CTAAA-GCAACC-ATATTTTCAAAA-TGC-AC-TCA-TA---TTAC--AAAGTTATTAATGTTT-ATTCTTCCTATTTCATGTTGTCA-TTAATTAT--TA-CATTA-TCCATCCTCTA-TGT-TCTCTCAAATC-AAATATTCAGTCAAA
gi|5 : TAT-A-CCGTATAAAC---CACA-TTTACT-TTCGAGA---TA-TGTTATATGATATTAGC--GGAGAT-ACTCGA----CA--GAAACA-TAAAAAGC-AAATGT-TCTG-TTT-TACAAAGGCTCTCTGATTACAGC-AGAATTATCC-TAT-GGTT-GTCATGCAATGTACA---CATGTATTCCCATCGTCGTTGGTCCCACAGAA-GCAA-GACAGTTCTAATTGCAACCGATATT-CGAAA--TGCCAC-TCAGTATTTTTAC--AAAATTATTAATGGTT-ATT-TCTATATTCTTCATTCTCA--TAATTAT--TACC---ACCCCA-CCT-GA-TG--TCTCTC--ATC-AAATATC--GTCAAAACCAC-AACAATTTTTCTTCTGGATT--GATCAAGC-AAATTGTTACAC-ATTTAA-GCAGAAAATATTTA-CGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTTC-ACCTTTAGCAA-CTAATATGCCCTCGacaca
gi|6 : GA-GCGAGA---CGGCC---ATCT-TACGAAAAT-GAA-GT-AGTTTTTTGCCTGAGCTGATT-T-A-G-CTAAAATAG-ATGTT-TCT--GA---TTTC----TTAAAA--A-T-AA-C--A-CAAGGTTAG--TCCA---GG-GAAAT--AAATCTG-GACCGA-AAA--TTAAGG-ACTT-AGA-TTGGG--AGCACTCC---ACGTT----TAGAAACGTTGA-AA-A--ATACGCCTTTA-TT-GCGTTAT-A-TAC-ATAATGTAACACA-TTCGTT-TT-GAGAC--TACTGTTTAATGATATAAAC-TGGAGA-TACTCGAATT-CA--GAAACATTAAAAAGCAAAATTT-TCTGTTTTGTACAAAGGCCCCTTGGTTACAGC-AGAATTGCCCGTAT-GG-TTGTCATgattgagaatttactaaacccattttcac
gi|7 : tgccaggggaaaatGT--TGCATATTTAA-AAGTAATAATAATTA-TTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACCAGCGTAG-TCTACAAA-ATACGC-G-ATATGTTTGACT-TTCAGTTTTTG-CATTCAAAATCTCA-CTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTG-GTGGTATGTGGGTGGGGG-TACTCCTATA-TTTC
gi|8 : CCCCATCGCCGTTGGTCCCACAGAACGT--TGACAGT-CTAAT-GCAACC-ATATTTCG-AAA-TGC-AC-TCACTATTTTTACAAAAAGTTATTAAAGTTTAATT-TCTCTATTTGTCA-TCTTACTTAATTATGCTA-C---A-CCCA--CT-GACTG--TCTCTC--ATCTAAATATTCG--CAAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAA
gi|9 : GCTCCA-GG-GCGAAAA-TCG-CCC-CATCT-CGGAAA--T-GAA-CT-A-TTTTTT-CTTGA----ATG-T-T-T-C-A---TGG-ATGTC------G----TT-C----TTAAAA--AAT-AA-C--A-CCAAGT-AGGATCCA---GG-AAA---TAAATT---GACG---AAA--TTAAGGCA--T-AAAGTTGGG--AGCCCTCC---ACGTT----CA-AAAC-TT-ATGA-AATATACGC-TTTA--T-ACGTTAT-A-caa
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11111111 1111 22222222222222222 11 111 1111 11 111 222222 11 1111111 33333 222 11 1111 11 1 11 1 111 1 11 11 11 111 111 11 2222 1 22 11 1 11 1 1 22 11 1 1 3333333333 1 1 11 1 1 222 111 1 44444444444 11 1 1 1 111 11 222 1 1 3333333333333 2222 1 1 11 111 1 11 333 11111 333333 1 11 1 666666666666666666666 1 1 11 2 33 1 11 1 11 1 1 44444 11 1 2222222 11 2 11111 1111 11 3333333 111 22222222222 1 1 111 11111 2222 11 1 1 1 33333 00000000000000000000 1 1 11 11 1 1 22222 1 1 555555555555555555555555555555555555555555555555555555 2222 2222 1 222
lowQualScore : 4 3 3 11111111 3 6666 3 3 1111 7 3 888 88888 44444444444444444 9999 66 0 4 4 66 5 77 33 000 77 444 1 777 8888 77 6 1111 11 1 444 222222 0 8 8 8 11 8 88 8 3333333 11111 8 8 0 0 111 0 88 44 9999 11 8 6 6 6 8 1 6 6 6 666 0 3 33 55 0 3 777 8 5 8 8 3 0 88 8 8 6 0 0 11 88 8 0 6 11 999 99 8 444 8 8 8 8 999 99 8 5555 2 9 0 0 00 3 2 9 44 7 3 7 88 6 3 3 0 7 00 88 3 7 3 6666666666 7 3 5 5 1 1 77 5 5 111 999 3 7 66666666666 88 3 3 7 0 444 22 333 3 0 0 3 2 9999999999999 1 0000 0 88 3 3 0 33 3 777 55 0 3 2 3 7 2 33 000 22222 6 222222 7 1 3 7 55 3 1 444444444444444444444 3 6 3 6 6 88 6 33 7 3 88 1 6 3 6 44 3 3 1 88888 1 1 33 3 0 7777777 33 2 0 11111 8 0000 88 11 0 0000000 6 555 7 3 77777777777 0 0 7 2 6 7 99 2 777 77777 6 0 0000 1 33 3 0 0 0 6 33333 88888888888888888888 3 3 6 88 7 88 3 3 99999 6 6 2 5 1 5 444444444444444444444444444444444444444444444444444444 4444 4444 333 1 5 1 000 1 1
lowQualScore : . . . ........ . .... . . .... . . ... ..... ................. .... .. . . . .. . .. .. ... .. ... . ... .... .. . .... .. . ... ...... . . . . .. . .. . ....... ..... . . . . ... . .. .. .... .. . . . . . . . . . ... . . .. .. . . ... . . . . . . .. . . . . . .. .. . . . .. ... .. . ... . . . . ... .. . .... . . . . .. . . . .. . . . .. . . . . . .. .. . . . .......... . . . . . . .. . . ... ... . . ........... .. . . . . ... .. ... . . . . . ............. . .... . .. . . . .. . ... .. . . . . . . .. ... ..... . ...... . . . . .. . . ..................... . . . . . .. . .. . . .. . . . . .. . . . ..... . . .. . . ....... .. . . ..... . .... .. .. . ....... . ... . . ........... . . . . . . .. . ... ..... . . .... . .. . . . . . ..... .................... . . . .. . .. . . ..... . . . . . . ...................................................... .... .... ... . . . ... . .
lowQualScore : 0 6 6 99999999 6 4444 6 6 4444 3 6 888 77777 88888888888888888 4444 11 8 4 4 99 0 44 66 000 44 333 4 999 4444 99 7 2222 00 0 000 000000 8 0 0 0 00 0 88 0 7777777 00000 0 0 8 8 000 8 88 44 8888 00 0 7 7 7 0 0 7 7 7 333 2 2 22 88 0 8 000 0 6 0 0 8 8 88 0 0 0 8 8 00 88 0 8 0 44 666 00 0 000 0 0 0 0 444 00 0 0000 5 8 8 8 55 2 5 2 77 3 3 3 33 7 3 3 7 3 00 33 3 3 3 7777777777 3 7 5 0 0 0 55 5 5 000 000 3 3 77777777777 33 3 3 3 0 222 55 222 2 0 0 2 5 5555555555555 0 8888 0 00 2 2 0 22 2 000 88 0 2 5 2 0 5 22 333 00000 7 000000 3 0 3 3 77 3 0 777777777777777777777 3 7 3 7 7 33 7 33 3 3 33 0 7 3 7 77 3 3 0 77777 2 0 88 2 0 5555555 22 5 0 88888 0 8888 88 00 8 7777777 5 888 0 2 88888888888 0 0 0 5 7 3 88 5 000 00000 5 2 5555 0 22 2 0 0 0 7 33333 33333333333333333333 3 3 7 33 3 33 3 3 77777 7 7 5 0 0 5 000000000000000000000000000000000000000000000000000000 5555 0000 000 0 0 0 000 0 0
consensus : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Reference ( family-7502 ) : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
gi|1 : GCTCCAAGG-GCAAAAAATCGGCCC-CATCT-CGGGAATAT-GAA-TT-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTCCTGT--G----TTTC----TTAAAA--AAT-AAAT--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTGCGACGGATAAA--TTAAGG-A--TTAAAGTTGGG--AGCACTCT---ACGAA----CAGAA-CGTT-A-GA-A--ATACGC-TTTA-TT-GCGTTAT-----G-ATAA-----CACACTTTACT-T-CGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-CA--GACACA-TAAAAAGC-AAATTT-TTTG-TT-GTACAAAGGC-CCCTGGTTACAGCTAGAATTATCC-TATTGGTTTGTCATACA-TGTACA-TACATGTATCCCCATCGGCGTTGGTTC-ACAGAATGCAATGCGCGT-CGAAT-GCAAC--ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTT--ATT-TCTCTATTTTTCAT-CTCA-TTAATTGGA-TA-C---A-CCCA-CCT-GA-TGTCTCTCTC--ATC-AAATAT-CGATCAAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTTAA-GCAGAAAATA--TACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAAT-AACTTGTTTACTTTC-AC--TT-------CAATATGCCGTCGTTTTATAGATAC-TCTATACAACAGCGATTATAGATTCGTA-TGCTTTCTTTTT---GAATGAAATATCGCATATTTAA-A-GTA-------T---TTAT--AAAATCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTTATACCA-CGTAGATCTACAA-A-TACGCCG-ATATGTTTGACTAT---GTCTTTTGCATTCA---TCTCA-CTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTGCTCCTAT--TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATTAACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAATT----GC-CTTAG-----TGCAACCCCCCCTAT-CTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATAC-TACGAGAGA-ATCAGT-CATAGATATGTAAATAAAC--AGAAAAAAAGAATTACATTTACCTCTTACTCGTACT-A-CGAT--TA-AATGTACCACGAAGATTACGCGAGAGT-ATA-TA-TATCGTGAT-AATGGTC--GTGTGATACATGTATTCTGGATGCTCTCCA-ATTCTATTTCCATT-TTGTTGT-CGA-A-TGCTTTTTAATTCAACAGGCCTATAGTCCTAAGTACAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCAA--ATATCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|10 : CTTTAAAG-GTGAAAA-TCAGCCC-CATCT----AAAAAT-GAA-TC-A-CATTTC-TCTGA----ATG-TAT-G-CTA----AGGTTG---TGT--A----TTTC----TT-AAA--AAC-AA-C--A-C
gi|11 : AAGG-CTGAAAA-TCAGCCCACATCT----AAAAATCGAA-TC-A-CATGTC-TCTGAC---ATG-T-A-T-CTA---AGG-----T-TGT--GATATTTTC----TTAAAA--ACA-AA-C--AACCAAAT-TG--TTCGTCTGACAAAATTTA---C---GACAGA-AAAATTTAAGG-A--T-AAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|12 : aGCTCAAAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-GAA-AC-A-TTTTTT-CTTGA----ATGTT-T-G-CTA---T-GGATG---TAT--G----TTTC----TTTAAA--AGT-----------TAGT-AG--TCCA---GG-GAAA-TTAAATCTG-GA-AGA-AAA--TTAAG
gi|13 : tagggTCAAC-TTACTGCATGCG--TGAAAGTGTATCAACGTATTTCAAATACATCCAGGGATGAAAACCCTGATGGAT----ACAATTGTATAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAA
gi|14 : gAAAAAATTACATTTCACTCT--CTCGTACTTAACGATAATATAAT-TACCTTGGA-ATTATGACTGACT-AAA-TA-CCTCGTGAT-AATGGTC--GTGTGATATCTGCAT
gi|15 : GAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTATGATATCTGC-------ATGCTCTCCA-ATTCCATTTCTATTATTG---------------TTTTAAATCA-CAG-CCTATAGTTCTAAGTAC
gi|16 : cAAA-TCGGCCC-CATCT-CG---AAAT-GAA-TT-A--TTTTT-CCTG-----ATGCT-T-G-CTA---T-GGATGTC-TGTAAG----TTGCATATTTAAAAGTAAT-AA-
gi|17 : ggtaggggctccGCTCCCAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-TAA-CC-A-TTTTTT-CCTGA----ATG-T-TAG-CTA---TGGt
gi|18 : taggAAGC-AAATTT-TCTG-TTTGTACAAAGGC-CTCTGGTTACAGC-AGAATTATCC-TAT-GGTT
gi|19 : aattGTTCTAAGG-GCGAAAA-TCGGCCC-C-TCT-CTCAGAAAT-AAA-CC-A-TTTTTT--CTGA----ATA-T-T-gt
gi|2 : ggCTCCAAG---CGAAAA-TCGGCCC-CATCTTCGGAA---T-GAAACT-A-TTTTTT-CCTGA----ATG-T-TTG-CTA---TGG-AT-TC-TGT--------TTC----TTAAAA--AATTAA-C--A-CCAA-T--G--TCCA---GG-GAAATT--AATCTG-GACTGA-AA---TTAAGG-A--A-AATGGTGGT--AGCACTCTCCAGCG-T----CAGAAACGTT-A-GACA--ATACGC-TTTA-TTTACGTTATCA-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGATCCCT-GA--TTCA--GAAACA-TAAAAAGC-ACATTT-TTT---TTGTACAAAGGC-CCCTG-TTA--GC-AGAATTACC-------------------ATGTTCACTACAT-TATCCCCATCGGCGTTGGTCC-A-AGAATGCA-TGACAGT-C--AT-GCAACC-ATTTTCCGAAAAATGC-GCCTCA-TATTT--AC--AAAGTTATTAATGTTT-ATT-TCTC-ATTTT-CAT-CTC--TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT--CTCTCT-ATC-AAATAT---GTCAAACC-ACAAACAATTTTTT----GGATTC-G-TCGA---AAAGTGT-ACACAATTTAAAGCAGAA--TA--TACCGGTACGTT-TAC-ACAAAGAGAG-GGAT-CGCTT--GAATAT-AACTTGTT-ACTTTCCAC--TTAG--AACTAG-ATGCCATCGTTT-ATAAATACCTCCTCACGTCAA--ATTGTAAAT-CGTAATGCTTTCTTTTTATCGAATAAAGT--TACATATTCAAGAAGTAATAA--AT-AATTATCAAAA-TCACTAACCAATATA-TACA-CATCATCACTGTGGCGGATTT-TACAA-CGTA--TGTACAATA-T-CGC-GTATATCTTT-----T---GACGTT--CAGTTA---TCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT-TGT-GTATGTGGGTGGGGGTTACT-CTATACTTTCTTCC---AAGAGTGT---AAGTT-TGC---GC-TTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT--TC----GCTTTT-GCGTTTTGCA-CCCCCCCCCTACTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGAT-TATCAGT-TATA-ATATGTAATTT-----AAAAAAAAATAATAACATTTCACTCT--CCCGTACTTA-CACA--TATAAT-TA-CTTGAACATTA-----GAGT-AAAGTATTCTCGTGATCAATGGGT--GTGTGATATCTGCA------ATACTCTCAACATTC--TTTTCATTATTGTT-T-TGACA-TGCTTTTTAAATCA-CCC-GCTATAGTTCTAAGTA-ACCATACGATCCACC-TACTGCAT-CG------AGTTTATTAACGTATTTAAT--ACATCTAGG----AAAAACCTGATGGATA-TAAT-ATTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGCG-CATTCATTCCGGGTGTT-ATTGTATAAATGTC-TCGGTGACCTGATTATTGC-----TTGTAGACTTCATGGTA-GCCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|3 : T-TACA---GTAG-TCTACAA---TACGC-G-AT--GTTTGACT-T--------T--CAGTC----TCTCA-CTCGCGTCACATGT-AATTGCA-TT-ATAGTTCCTTTCGGTGTGT-GT-TGTGGGTGGG--TT--CCCTATA-TTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCTAATTAA-CTGTTGTATAGTGAAGTTTT--TTTATAA-AAGCGATGGAAA-TTCTTTGC-CTT---------CA-ACCCCC-TAT-CTAAATCCC-TCATCAATG-ACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATAC-TAC-AGAGATATCAGTATATA-ATATGTAACTT--TTTAAAAAAAAAACATTTCACATCTCTCT--TCGCTACTTA-CG------CAAT--ACCTTGAA-ATTACGACTGAGTTAAA-C--TCTCGTGA--AATGGTCCAGTGTGAT-TCTGCATT----GC-CTCTC---ATTATATTTCCATTATTGTT-TTCGA-AATGCTTTCTTAATCA-CAG-CCTATAGC-CTAAGTACACCATACAATCAACCTTACTACATGCG--TGAAAGTTTATTAACGTATTT--A--A---------A-AAAAACCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGG-CCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|4 : tttacacgCTCCAAGGCGCGAAAA-TCGGCCC-CATCT-CGGAA---T-GAA-CTTA-TTTTTT-CTTGA----ATG-T-T-TTCTA---TGG-ATGTC-TGT--------TTC----TTAAAA--AAT-AA-CTAA-CCAAGT-AGA-TCCA---GG--AAATTTAA-TCTG-GACA-A-AAA--TTAAGG-A--T-ATAGTTGGGGAAGCTTCCT---GCCATTCTTCAGAAACGTT-A-GA-A--ATATAC-TTTAATT-ACGTTAT-ATCCG-GTTA------ACA-ATTACTATTCG-GA---TACTGTTTA-TGATATTAGC-TGGAGAT-ACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTG-TTTGTACAAAGGCTCCCTGGT--CAGC-AGAAT-ATCC-TAT-GGTCTGTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCCCCACAGAATGC-ATGACA-T-CTAAA-GCAACC-ATATTTTCAAAA-TGC-AC-TCA-TA---TTAC--AAAGTTATTAATGTTT-ATTCTTCCTATTTCATGTTGTCA-TTAATTAT--TA-CATTA-TCCATCCTCTA-TGT-TCTCTCAAATC-AAATATTCAGTCAAA
gi|5 : TAT-A-CCGTATAAAC---CACA-TTTACT-TTCGAGA---TA-TGTTATATGATATTAGC--GGAGAT-ACTCGA----CA--GAAACA-TAAAAAGC-AAATGT-TCTG-TTT-TACAAAGGCTCTCTGATTACAGC-AGAATTATCC-TAT-GGTT-GTCATGCAATGTACA---CATGTATTCCCATCGTCGTTGGTCCCACAGAA-GCAA-GACAGTTCTAATTGCAACCGATATT-CGAAA--TGCCAC-TCAGTATTTTTAC--AAAATTATTAATGGTT-ATT-TCTATATTCTTCATTCTCA--TAATTAT--TACC---ACCCCA-CCT-GA-TG--TCTCTC--ATC-AAATATC--GTCAAAACCAC-AACAATTTTTCTTCTGGATT--GATCAAGC-AAATTGTTACAC-ATTTAA-GCAGAAAATATTTA-CGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTTC-ACCTTTAGCAA-CTAATATGCCCTCGacaca
gi|6 : GA-GCGAGA---CGGCC---ATCT-TACGAAAAT-GAA-GT-AGTTTTTTGCCTGAGCTGATT-T-A-G-CTAAAATAG-ATGTT-TCT--GA---TTTC----TTAAAA--A-T-AA-C--A-CAAGGTTAG--TCCA---GG-GAAAT--AAATCTG-GACCGA-AAA--TTAAGG-ACTT-AGA-TTGGG--AGCACTCC---ACGTT----TAGAAACGTTGA-AA-A--ATACGCCTTTA-TT-GCGTTAT-A-TAC-ATAATGTAACACA-TTCGTT-TT-GAGAC--TACTGTTTAATGATATAAAC-TGGAGA-TACTCGAATT-CA--GAAACATTAAAAAGCAAAATTT-TCTGTTTTGTACAAAGGCCCCTTGGTTACAGC-AGAATTGCCCGTAT-GG-TTGTCATgattgagaatttactaaacccattttcac
gi|7 : tgccaggggaaaatGT--TGCATATTTAA-AAGTAATAATAATTA-TTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACCAGCGTAG-TCTACAA-AATACGC-G-ATATGTTTGACT-TTCAGTTTTTG-CATTCAAAATCTCA-CTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTG-GTGGTATGTGGGTGGGGG-TACTCCTATA-TTTC
gi|8 : CCCCATCGCCGTTGGTCCCACAGAACGT--TGACAGT-CTAAT-GCAACC-ATATTTCG-AAA-TGC-AC-TCACTATTTTTACAAAAAGTTATTAAAGTTTAATT-TCTCTATTTGTCA-TCTTACTTAATTATGCTA-C---A-CCCA--CT-GACTG--TCTCTC--ATCTAAATATTCG--CAAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAA
gi|9 : GCTCCA-GG-GCGAAAA-TCG-CCC-CATCT-CGGAAA--T-GAA-CT-A-TTTTTT-CTTGA----ATG-T-T-T-C-A---TGG-ATGTC------G----TT-C----TTAAAA--AAT-AA-C--A-CCAAGT-AGGATCCA---GG-AAA---TAAATT---GACG---AAA--TTAAGGCA--T-AAAGTTGGG--AGCCCTCC---ACGTT----CA-AAAC-TT-ATGA-AATATACGC-TTTA--T-ACGTTAT-A-caa
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11111111 1111 22222222222222222 11 111 1111 11 111 222222 11 1111111 33333 222 11 1111 11 1 11 1 111 1 11 11 11 111 111 11 2222 1 22 11 1 11 1 1 22 11 1 1 3333333333 1 1 11 1 1 222 111 1 44444444444 11 1 1 1 111 11 222 1 1 3333333333333 2222 1 1 11 111 1 11 333 11111 333333 1 11 1 666666666666666666666 1 1 11 2 33 1 11 1 11 1 1 44444 11 1 2222222 11 2 11111 1111 11 3333333 111 22222222222 1 1 111 11111 2222 11 1 1 1 33333 00000000000000000000 1 1 11 11 1 1 22222 1 1 555555555555555555555555555555555555555555555555555555 2222 2222 1 222
lowQualScore : 4 3 3 11111111 3 6666 3 3 1111 7 3 888 88888 44444444444444444 9999 66 0 4 4 66 5 77 33 000 77 444 1 777 8888 77 6 1111 11 1 444 222222 0 8 8 8 11 8 88 8 3333333 11111 8 8 0 0 111 0 88 44 9999 11 8 6 6 6 8 1 6 6 6 666 0 3 33 55 0 3 777 8 5 8 8 3 0 88 8 8 6 0 0 11 88 8 0 6 11 999 99 8 444 8 8 8 8 999 99 8 5555 2 9 0 0 00 3 2 9 44 7 3 7 88 6 3 3 0 7 00 88 3 7 3 6666666666 7 3 5 5 1 1 77 5 5 111 999 3 7 66666666666 88 3 3 7 0 444 22 333 3 0 0 3 2 9999999999999 1 0000 0 88 3 3 0 33 3 777 55 0 3 2 3 7 2 33 000 22222 6 222222 7 1 3 7 55 3 1 444444444444444444444 3 6 3 6 6 88 6 33 7 3 88 1 6 3 6 44 3 3 1 88888 1 1 33 3 0 7777777 33 2 0 11111 8 0000 88 11 0 0000000 6 555 7 3 77777777777 0 0 7 2 6 7 99 2 777 77777 6 0 0000 1 33 3 0 0 0 6 33333 88888888888888888888 3 3 6 88 7 88 3 3 99999 6 6 2 5 1 5 444444444444444444444444444444444444444444444444444444 4444 4444 333 1 5 1 000 1 1
lowQualScore : . . . ........ . .... . . .... . . ... ..... ................. .... .. . . . .. . .. .. ... .. ... . ... .... .. . .... .. . ... ...... . . . . .. . .. . ....... ..... . . . . ... . .. .. .... .. . . . . . . . . . ... . . .. .. . . ... . . . . . . .. . . . . . .. .. . . . .. ... .. . ... . . . . ... .. . .... . . . . .. . . . .. . . . .. . . . . . .. .. . . . .......... . . . . . . .. . . ... ... . . ........... .. . . . . ... .. ... . . . . . ............. . .... . .. . . . .. . ... .. . . . . . . .. ... ..... . ...... . . . . .. . . ..................... . . . . . .. . .. . . .. . . . . .. . . . ..... . . .. . . ....... .. . . ..... . .... .. .. . ....... . ... . . ........... . . . . . . .. . ... ..... . . .... . .. . . . . . ..... .................... . . . .. . .. . . ..... . . . . . . ...................................................... .... .... ... . . . ... . .
lowQualScore : 0 6 6 99999999 6 4444 6 6 4444 3 6 888 77777 88888888888888888 4444 11 8 4 4 99 0 44 66 000 44 333 4 999 4444 99 7 2222 00 0 000 000000 8 0 0 0 00 0 88 0 7777777 00000 0 0 8 8 000 8 88 44 8888 00 0 7 7 7 0 0 7 7 7 333 2 2 22 88 0 8 000 0 6 0 0 8 8 88 0 0 0 8 8 00 88 0 8 0 44 666 00 0 000 0 0 0 0 444 00 0 0000 5 8 8 8 55 2 5 2 77 3 3 3 33 7 3 3 7 3 00 33 3 3 3 7777777777 3 7 5 0 0 0 55 5 5 000 000 3 3 77777777777 33 3 3 3 0 222 55 222 2 0 0 2 5 5555555555555 0 8888 0 00 2 2 0 22 2 000 88 0 2 5 2 0 5 22 333 00000 7 000000 3 0 3 3 77 3 0 777777777777777777777 3 7 3 7 7 33 7 33 3 3 33 0 7 3 7 77 3 3 0 77777 2 0 88 2 0 5555555 22 5 0 88888 0 8888 88 00 8 7777777 5 888 0 2 88888888888 0 0 0 5 7 3 88 5 000 00000 5 2 5555 0 22 2 0 0 0 7 33333 33333333333333333333 3 3 7 33 3 33 3 3 77777 7 7 5 0 0 5 000000000000000000000000000000000000000000000000000000 5555 0000 000 0 0 0 000 0 0
consensus : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Reference ( family-7502 ) : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
gi|1 : GCTCCAAGG-GCAAAAAATCGGCCC-CATCT-CGGGAATAT-GAA-TT-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTCCTGT--G----TTTC----TTAAAA--AAT-AAAT--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTGCGACGGATAAA--TTAAGG-A--TTAAAGTTGGG--AGCACTCT---ACGAA----CAGAA-CGTT-A-GA-A--ATACGC-TTTA-TT-GCGTTAT-----G-ATAA-----CACACTTTACT-T-CGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-CA--GACACA-TAAAAAGC-AAATTT-TTTG-TT-GTACAAAGGC-CCCTGGTTACAGCTAGAATTATCC-TATTGGTTTGTCATACA-TGTACA-TACATGTATCCCCATCGGCGTTGGTTC-ACAGAATGCAATGCGCGT-CGAAT-GCAAC--ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTT--ATT-TCTCTATTTTTCAT-CTCA-TTAATTGGA-TA-C---A-CCCA-CCT-GA-TGTCTCTCTC--ATC-AAATAT-CGATCAAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTTAA-GCAGAAAATA--TACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAAT-AACTTGTTTACTTTC-AC--TT-------CAATATGCCGTCGTTTTATAGATAC-TCTATACAACAGCGATTATAGATTCGTA-TGCTTTCTTTTT---GAATGAAATATCGCATATTTAA-A-GTA-------T---TTAT--AAAATCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTTATACCA-CGTAGATCTACAA-A-TACGCCG-ATATGTTTGACTAT---GTCTTTTGCATTCA---TCTCA-CTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTGCTCCTAT--TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATTAACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAATT----GC-CTTAG-----TGCAACCCCCCCTAT-CTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATAC-TACGAGAGA-ATCAGT-CATAGATATGTAAATAAAC--AGAAAAAAAGAATTACATTTACCTCTTACTCGTACT-A-CGAT--TA-AATGTACCACGAAGATTACGCGAGAGT-ATA-TA-TATCGTGAT-AATGGTC--GTGTGATACATGTATTCTGGATGCTCTCCA-ATTCTATTTCCATT-TTGTTGT-CGA-A-TGCTTTTTAATTCAACAGGCCTATAGTCCTAAGTACAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCAA--ATATCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|10 : CTTTAAAG-GTGAAAA-TCAGCCC-CATCT----AAAAAT-GAA-TC-A-CATTTC-TCTGA----ATG-TAT-G-CTA----AGGTTG---TGT--A----TTTC----TT-AAA--AAC-AA-C--A-C
gi|11 : AAGG-CTGAAAA-TCAGCCCACATCT----AAAAATCGAA-TC-A-CATGTC-TCTGAC---ATG-T-A-T-CTA---AGG-----T-TGT--GATATTTTC----TTAAAA--ACA-AA-C--AACCAAAT-TG--TTCGTCTGACAAAATTTA---C---GACAGA-AAAATTTAAGG-A--T-AAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|12 : aGCTCAAAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-GAA-AC-A-TTTTTT-CTTGA----ATGTT-T-G-CTA---T-GGATG---TAT--G----TTTC----TTTAAA--AGT-----------TAGT-AG--TCCA---GG-GAAA-TTAAATCTG-GA-AGA-AAA--TTAAG
gi|13 : tagggTCAAC-TTACTGCATGCG--TGAAAGTGTATCAACGTATTTCAAATACATCCAGGGATGAAAACCCTGATGGAT----ACAATTGTATAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAA
gi|14 : gAAAAAATTACATTTCACTCT--CTCGTACTTAACGATAATATAAT-TACCTTGGA-ATTATGACTGACT-AAA-TA-CCTCGTGAT-AATGGTC--GTGTGATATCTGCAT
gi|15 : GAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTATGATATCTGC-------ATGCTCTCCA-ATTCCATTTCTATTATTG---------------TTTTAAATCA-CAG-CCTATAGTTCTAAGTAC
gi|16 : cAAA-TCGGCCC-CATCT-CG---AAAT-GAA-TT-A--TTTTT-CCTG-----ATGCT-T-G-CTA---T-GGATGTC-TGTAAG----TTGCATATTTAAAAGTAAT-AA-
gi|17 : ggtaggggctccGCTCCCAGG-GCGAAAA-TCGGCCC-CATCT-CGG--AAAT-TAA-CC-A-TTTTTT-CCTGA----ATG-T-TAG-CTA---TGGt
gi|18 : taggAAGC-AAATTT-TCTG-TTTGTACAAAGGC-CTCTGGTTACAGC-AGAATTATCC-TAT-GGTT
gi|19 : aattGTTCTAAGG-GCGAAAA-TCGGCCC-C-TCT-CTCAGAAAT-AAA-CC-A-TTTTTT--CTGA----ATA-T-T-gt
gi|2 : ggCTCCAAG---CGAAAA-TCGGCCC-CATCTTCGGAA---T-GAAACT-A-TTTTTT-CCTGA----ATG-T-TTG-CTA---TGG-AT-TC-TGT--------TTC----TTAAAA--AATTAA-C--A-CCAA-T--G--TCCA---GG-GAAATT--AATCTG-GACTGA-AA---TTAAGG-A--A-AATGGTGGT--AGCACTCTCCAGCG-T----CAGAAACGTT-A-GACA--ATACGC-TTTA-TTTACGTTATCA-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGATCCCT-GA--TTCA--GAAACA-TAAAAAGC-ACATTT-TTT---TTGTACAAAGGC-CCCTG-TTA--GC-AGAATTACC-------------------ATGTTCACTACAT-TATCCCCATCGGCGTTGGTCC-A-AGAATGCA-TGACAGT-C--AT-GCAACC-ATTTTCCGAAAAATGC-GCCTCA-TATTT--AC--AAAGTTATTAATGTTT-ATT-TCTC-ATTTT-CAT-CTC--TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT--CTCTCT-ATC-AAATAT---GTCAAACC-ACAAACAATTTTTT----GGATTC-G-TCGA---AAAGTGT-ACACAATTTAAAGCAGAA--TA--TACCGGTACGTT-TAC-ACAAAGAGAG-GGAT-CGCTT--GAATAT-AACTTGTT-ACTTTCCAC--TTAG--AACTAG-ATGCCATCGTTT-ATAAATACCTCCTCACGTCAA--ATTGTAAAT-CGTAATGCTTTCTTTTTATCGAATAAAGT--TACATATTCAAGAAGTAATAA--AT-AATTATCAAAA-TCACTAACCAATATA-TACA-CATCATCACTGTGGCGGATTT-TACAA-CGTA--TGTACAATA-T-CGC-GTATATCTTT-----T---GACGTT--CAGTTA---TCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT-TGT-GTATGTGGGTGGGGGTTACT-CTATACTTTCTTCC---AAGAGTGT---AAGTT-TGC---GC-TTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT--TC----GCTTTT-GCGTTTTGCA-CCCCCCCCCTACTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGAT-TATCAGT-TATA-ATATGTAATTT-----AAAAAAAAATAATAACATTTCACTCT--CCCGTACTTA-CACA--TATAAT-TA-CTTGAACATTA-----GAGT-AAAGTATTCTCGTGATCAATGGGT--GTGTGATATCTGCA------ATACTCTCAACATTC--TTTTCATTATTGTT-T-TGACA-TGCTTTTTAAATCA-CCC-GCTATAGTTCTAAGTA-ACCATACGATCCACC-TACTGCAT-CG------AGTTTATTAACGTATTTAAT--ACATCTAGG----AAAAACCTGATGGATA-TAAT-ATTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGCG-CATTCATTCCGGGTGTT-ATTGTATAAATGTC-TCGGTGACCTGATTATTGC-----TTGTAGACTTCATGGTA-GCCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|3 : T-TACA---GTAG-TCTACAA---TACGC-G-AT--GTTTGACT-T--------T--CAGTC----TCTCA-CTCGCGTCACATGT-AATTGCA-TT-ATAGTTCCTTTCGGTGTGT-GT-TGTGGGTGGG--TT--CCCTATA-TTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCTAATTAA-CTGTTGTATAGTGAAGTTTT--TTTATAA-AAGCGATGGAAA-TTCTTTGC-CTT---------CA-ACCCCC-TAT-CTAAATCCC-TCATCAATG-ACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATAC-TAC-AGAGATATCAGTATATA-ATATGTAACTT--TTTAAAAAAAAAACATTTCACATCTCTCT--TCGCTACTTA-CG------CAAT--ACCTTGAA-ATTACGACTGAGTTAAA-C--TCTCGTGA--AATGGTCCAGTGTGAT-TCTGCATT----GC-CTCTC---ATTATATTTCCATTATTGTT-TTCGA-AATGCTTTCTTAATCA-CAG-CCTATAGC-CTAAGTACACCATACAATCAACCTTACTACATGCG--TGAAAGTTTATTAACGTATTT--A--A---------A-AAAAACCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGG-CCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|4 : tttacacgCTCCAAGGCGCGAAAA-TCGGCCC-CATCT-CGGAA---T-GAA-CTTA-TTTTTT-CTTGA----ATG-T-T-TTCTA---TGG-ATGTC-TGT--------TTC----TTAAAA--AAT-AA-CTAA-CCAAGT-AGA-TCCA---GG--AAATTTAA-TCTG-GACA-A-AAA--TTAAGG-A--T-ATAGTTGGGGAAGCTTCCT---GCCATTCTTCAGAAACGTT-A-GA-A--ATATAC-TTTAATT-ACGTTAT-ATCCG-GTTA------ACA-ATTACTATTCG-GA---TACTGTTTA-TGATATTAGC-TGGAGAT-ACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTG-TTTGTACAAAGGCTCCCTGGT--CAGC-AGAAT-ATCC-TAT-GGTCTGTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCCCCACAGAATGC-ATGACA-T-CTAAA-GCAACC-ATATTTTCAAAA-TGC-AC-TCA-TA---TTAC--AAAGTTATTAATGTTT-ATTCTTCCTATTTCATGTTGTCA-TTAATTAT--TA-CATTA-TCCATCCTCTA-TGT-TCTCTCAAATC-AAATATTCAGTCAAA
gi|5 : TAT-A-CCGTATAAAC---CACA-TTTACT-TTCGAGA---TA-TGTTATATGATATTAGC--GGAGAT-ACTCGA----CA--GAAACA-TAAAAAGC-AAATGT-TCTG-TTT-TACAAAGGCTCTCTGATTACAGC-AGAATTATCC-TAT-GGTT-GTCATGCAATGTACA---CATGTATTCCCATCGTCGTTGGTCCCACAGAA-GCAA-GACAGTTCTAATTGCAACCGATATT-CGAAA--TGCCAC-TCAGTATTTTTAC--AAAATTATTAATGGTT-ATT-TCTATATTCTTCATTCTCA--TAATTAT--TACC---ACCCCA-CCT-GA-TG--TCTCTC--ATC-AAATATC--GTCAAAACCAC-AACAATTTTTCTTCTGGATT--GATCAAGC-AAATTGTTACAC-ATTTAA-GCAGAAAATATTTA-CGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTTC-ACCTTTAGCAA-CTAATATGCCCTCGacaca
gi|6 : GA-GCGAGA---CGGCC---ATCT-TACGAAAAT-GAA-GT-AGTTTTTTGCCTGAGCTGATT-T-A-G-CTAAAATAG-ATGTT-TCT--GA---TTTC----TTAAAA--A-T-AA-C--A-CAAGGTTAG--TCCA---GG-GAAAT--AAATCTG-GACCGA-AAA--TTAAGG-ACTT-AGA-TTGGG--AGCACTCC---ACGTT----TAGAAACGTTGA-AA-A--ATACGCCTTTA-TT-GCGTTAT-A-TAC-ATAATGTAACACA-TTCGTT-TT-GAGAC--TACTGTTTAATGATATAAAC-TGGAGA-TACTCGAATT-CA--GAAACATTAAAAAGCAAAATTT-TCTGTTTTGTACAAAGGCCCCTTGGTTACAGC-AGAATTGCCCGTAT-GG-TTGTCATgattgagaatttactaaacccattttcac
gi|7 : tgccaggggaaaatGT--TGCATATTTAA-AAGTAATAATAATTA-TTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACCAGCGTAG-TCTACAA-AATACGC-G-ATATGTTTGACT-TTCAGTTTTTG-CATTCAAAATCTCA-CTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTG-GTGGTATGTGGGTGGGGG-TACTCCTATA-TTTC
gi|8 : CCCCATCGCCGTTGGTCCCACAGAACGT--TGACAGT-CTAAT-GCAACC-ATATTTCG-AAA-TGC-AC-TCACTATTTTTACAAAAAGTTATTAAAGTTTAATT-TCTCTATTTGTCA-TCTTACTTAATTATGCTA-C---A-CCCA--CT-GACTG--TCTCTC--ATCTAAATATTCG--CAAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAA
gi|9 : GCTCCA-GG-GCGAAAA-TCG-CCC-CATCT-CGGAAA--T-GAA-CT-A-TTTTTT-CTTGA----ATG-T-T-T-C-A---TGG-ATGTC------G----TT-C----TTAAAA--AAT-AA-C--A-CCAAGT-AGGATCCA---GG-AAA---TAAATT---GACG---AAA--TTAAGGCA--T-AAAGTTGGG--AGCCCTCC---ACGTT----CA-AAAC-TT-ATGA-AATATACGC-TTTA--T-ACGTTAT-A-caa
blockSeqs : C . A CTCAGAA C ACT G G GCTG T A AG AAATA GATGTCTGTAAG ATAT GT T . TA A TA GA TCT CA TTT A TG AGA AT C CTT GA A CCA ATTCTT G T C AT C AT T CACCG TGTAA . A C CT TC ATT AA T A A T T G . G . TCT A CT TG C T AT T T T G C AA C C G AA TA C A TT ACT GC C ATT C T C C TT AA T TCAG C A T TA A G A TA A A A TT C . T A C . A T C CTTTAGCAA T A . C T T . . A ATC T G A ATAATAATTA CA . A A . CAG G TA A . T A G TTCAGTTTTTG G AAAA A TC T A G A T CTT GT G A G T A C AC ACC CAAG G GC A C T A CT C A TCGCTTTTGCGTTT . C A C G . T AC A . GT T G T G AT A . T TTT A A . T A ATAATAT T C C TGACT T GTAT TC CA ATT G AAC C A TTTTCGAAA . . T C C A CT G T CAAAT C GATG C A A T T G G TTAAC TATCATTATGATTTGATGAC . G G TA T CT T T TTAAA G G C G A T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . AAG C . G GCG G G
blockSeqs : . . . TACGAAA . CTT . . C C . TG AG ATGTTTCTGA . . . . . . T A . G TTT A TG AGA . . T . T . TT . . . . . T . ATCCG AC . . C T T TT . . . . . T G . . . TT A T T C T AT . T . . T A . . C . T . T TT AT . . . . . . . T T . TCG C A C C A G . A . . . . . . . . . . . . . TTAGAA . C T . A ATAAATAA . . . . . AA G AA A . . A G TGACGTT G A . TC T A . A T T T . A G T A C A . AA . TG . T . . . . T ATTCTTTGCCTT . . . . . . . . . . . A . . . T . . C . T A . T . CATAT T C . CGACT . TA T . A A CA T A TTTTGACA . . T C C A T G T AAT C AA A A A . . . . . . . . . . . . . . . . .
blockSeqs : . . . TCGGAA . TC . . . . . TT TG TTGTGATAT . . . . . . A . . G TT A TG TGA . . A . A . TT . . . . . T . ACCGT . . . . T T T . . . . . C A . . . TT A . G C C AA . T . . T A . . . . T . T T T . . . . . . . T . . CG . . . . . . . . A . . . . . . . TT T . . A . . . . . . G . . . . . . A A T . T . C . . . . . TA T . . . . . A . . . . . C . . A . . C . . . . .
blockSeqs : . . . CGGAAA . TC . . . . . G TG GTTGTGTA . . . . . . A . . G TT A TG CGA . . T . C . T . . . . . . . ATAC . . . . . T . . . . . . . G . . . . . . T . . . . . . . . . . T . . T A . . . . . . . T . . G . C . .
blockSeqs : . . . CGGAA . AC . . . . . T TG GATGTATG . . . . . . A . . A T . . AA . . T . . . . . . . .
blockSeqs : . . . CGGAA . TT . . . . . G TG ATGTCTGT . . . . . . . . . . T . . G .
blockSeqs : . . . CGGAA . CC . . . . . G A ATTCTGT . . . . . .
blockSeqs : . . . AAAA . CC . . . . . G T ATGTCG . . . .
blockSeqs : . . . AAAA . GT . . . . . T T
blockSeqs : . . CGAA . CT . . . . .
blockSeqCons : CGGAA*** ATGTCTGT********* TTT TG* NGA* T*** ANCCG** *** T* TT* AT* T* T* AT* ** T**
originalCons : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCT-CGGAAAAAT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGGATGTC-TGT--G----TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTAT-A-CCG-ATAA-----CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGATTACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTTTGTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAATGACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCATTCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TGT-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
finalCons : GCTCCAAGG-GCGAAAA-TCGGCCC-CATCTCGGAA---AT-GAA-CC-A-TTTTTT-CCTGA----ATG-T-T-G-CTA---TGGATGTCTGT---------TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACNGA-AAA--TTAAGG-AT---AAAGTTGGG--AGCACTCC---GCGNT----CAGAAACGTT-A-GA-A--ATACGC-TTTA-TT-ACGTTATANCCG--ATAA-----CACA-TTTACT-TTCGAGA---TACTGTTTAATGATATTAAC-TGGAGAT-ACTCGA--T-CA--GAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGTT-GTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCAT-GACAGT-CTAAT-GCAACC-ATATTTCGAAAA-TGC-AC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCAT-CTCAT-TAATTAT--TA-C---A-CCCA-CCT-GA-TGT--CTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 1111 1 2222222222 11 111 1111 11 22222222222 11 222222222 11 333 2222222 1 11 1 1 1 11 222 11 111 33 2222 1 22 11 1 11 1 1 22 11 1 1 3333333333 1 1 11 1 1 222 111 1 44444444444 11 1 1 1 111 11 222 1 1 3333333333333 2222 1 1 11 111 1 11 333 11111 333333 1 11 1 666666666666666666666 1 1 11 2 33 1 11 1 11 1 1 44444 11 1 2222222 11 2 11111 1111 11 3333333 111 22222222222 1 1 111 11111 2222 11 1 1 1 33333 00000000000000000000 1 1 11 11 1 1 22222 1 1 555555555555555555555555555555555555555555555555555555 2222 2222 1 222
lowQualScore : 4 3 3 3 555 88 777 3 3 1111 0 3 7 777 4 3333333333 0 9999 66 2 4 4 66 5 77 33 000 5 5555 777 55 5 77 6 1111 11 1 44444444444 0 8 8 8 11 8 8 0 8 888888888 11 8 8 0 0 000 6 88 8 0000000 8 6 6 6 8 1 6 6 6 888 0 3 33 55 0 3 88 8 5 8 8 0 0 8 8 8 6 0 0 11 88 8 0 0 0 222 999 99 8 444 8 8 8 8 8 00 8 5555 2 9 0 0 00 3 2 9 44 7 3 7 88 6 3 3 0 7 00 88 3 7 3 6666666666 7 3 5 5 1 1 77 5 5 111 999 3 7 66666666666 88 3 3 7 0 444 22 333 3 0 0 3 2 9999999999999 1 0000 0 88 3 3 0 33 3 777 55 0 3 2 3 7 2 33 000 22222 6 222222 7 1 3 7 55 3 1 444444444444444444444 3 6 3 6 6 88 6 33 7 3 88 1 6 3 6 44 3 3 1 88888 1 1 33 3 0 7777777 33 2 0 11111 8 0000 88 11 0 0000000 6 555 7 3 77777777777 0 0 7 2 6 7 99 2 777 77777 6 0 0000 1 33 3 0 0 0 6 33333 88888888888888888888 3 3 6 88 7 88 3 3 99999 6 6 2 5 1 5 444444444444444444444444444444444444444444444444444444 4444 4444 333 1 5 1 000 1 1
lowQualScore : . . . . ... .. ... . . .... . . . ... . .......... . .... .. . . . .. . .. .. ... . .... ... .. . .. . .... .. . ........... . . . . .. . . . . ......... .. . . . . ... . .. . ....... . . . . . . . . . ... . . .. .. . . .. . . . . . . . . . . . . .. .. . . . . ... ... .. . ... . . . . . .. . .... . . . . .. . . . .. . . . .. . . . . . .. .. . . . .......... . . . . . . .. . . ... ... . . ........... .. . . . . ... .. ... . . . . . ............. . .... . .. . . . .. . ... .. . . . . . . .. ... ..... . ...... . . . . .. . . ..................... . . . . . .. . .. . . .. . . . . .. . . . ..... . . .. . . ....... .. . . ..... . .... .. .. . ....... . ... . . ........... . . . . . . .. . ... ..... . . .... . .. . . . . . ..... .................... . . . .. . .. . . ..... . . . . . . ...................................................... .... .... ... . . . ... . .
lowQualScore : 0 6 6 6 555 66 666 6 6 4444 9 6 3 000 0 0000000000 8 4444 11 0 4 4 99 0 44 66 000 7 7777 999 33 7 99 7 2222 00 0 44444444444 8 0 0 0 00 0 0 8 0 000000000 00 0 0 8 8 000 0 88 0 8888888 0 7 7 7 0 0 7 7 7 333 2 2 22 88 0 8 88 0 6 0 0 8 6 0 0 0 0 8 8 00 88 0 8 8 8 000 666 00 0 000 0 0 0 0 0 00 0 0000 5 8 8 8 55 2 5 2 77 3 3 3 33 7 3 3 7 3 00 33 3 3 3 7777777777 3 7 5 0 0 0 55 5 5 000 000 3 3 77777777777 33 3 3 3 0 222 55 222 2 0 0 2 5 5555555555555 0 8888 0 00 2 2 0 22 2 000 88 0 2 5 2 0 5 22 333 00000 7 000000 3 0 3 3 77 3 0 777777777777777777777 3 7 3 7 7 33 7 33 3 3 33 0 7 3 7 77 3 3 0 77777 2 0 88 2 0 5555555 22 5 0 88888 0 8888 88 00 8 7777777 5 888 0 2 88888888888 0 0 0 5 7 3 88 5 000 00000 5 2 5555 0 22 2 0 0 0 7 33333 33333333333333333333 3 3 7 33 3 33 3 3 77777 7 7 5 0 0 5 000000000000000000000000000000000000000000000000000000 5555 0000 000 0 0 0 000 0 0
consensus : GCTCCAAGG-GCGAAAA-TCGGCCC-C-ATCT--CGGAAAT--GAA-C-CA-TTTTTT-CCTGA----ATG-T-T-GCTA---TGG-ATGT--C-TGT---TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACGGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GC----GTTCAGAAACGTT-A-GA-A--ATACGC-TTT-ATT-ACGTTATATCCGT---ATAA--CACA-TTTACT-TTCGAGAC--TACTGTTTAATGATATTAAC-TGGAGAT-ACTCGA--T-C--AGAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGT-T-GTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCA-TGACAG-TCTAA-TGCAACC-ATATTTCGAAAA-TG-CAC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCAT--TCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TG-TCTCTCT-ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
Reference ( family-7502 ) : GCTCCAAGG-GCGAAAA-TCGGCCC-C-ATCT--CGGAAAT--GAA-C-CA-TTTTTT-CCTGA----ATG-T-T-GCTA---TGG-ATGT--C-TGT---TTTC----TTAAAA--AAT-AA-C--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTG-GACNGA-AAA--TTAAGG-A--T-AAAGTTGGG--AGCACTCC---GC----GNTCAGAAACGTT-A-GA-A--ATACGC-TTT-ATT-ACGTTATANCCG----ATAA--CACA-TTTACT-TTCGAGA---TACTGTTTAATGATATTAAC-TGGAGAT-ACTCGA--T-C--AGAAACA-TAAAAAGC-AAATTT-TCTG-TTTGTACAAAGGCTCCCTGGTTACAGC-AGAATTATCC-TAT-GGT-T-GTCATGCAATGTACA-TACATGTATCCCCATCGGCGTTGGTCCCACAGAATGCA-TGACAG-TCTAA-TGCAACC-ATATTTCGAAAA-TG-CAC-TCA-TATTTTTAC--AAAGTTATTAATGTTT-ATT-TCTCTATTTTTCA---TCTCA-TTAATTAT--TA-C---A-CCCA-CCT-GA-TG-TCTCTC--ATC-AAATATTCGGTCAAACCCACAAACAATTTTTTNTTTGGATTC-GATCAAGCAAAAGTGTTACACAATTTAA-GCAGAAAATA--TACCGGTACGTT-TAC-ACGAAGAGAGAGGAT-CGCTT--GAAAAT-AACTTGTTTACTTTC-AC--TTAG--A-CTAATATGCCGTCGTTTTATAGATACCTCCNCACGNCAGCGATTGTAGATTCGTAATGCTTTCTTTTTATCGAATGAAGT--CGCATATTTAA-AAGTAATAA--AT-A-TTAT--AAA-TCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTT-TACNA-CGTAG-TCTACAA-A-TACGC-G-ATATGTTTGACT-T---GTCTTT--CANTCA---TCTCA-CTCGCGTNACATGTTAATT-CA-TTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTACTCCTATA-TTTCTTCCG--AAGAGTGTCGAGAGTTGTGC---GCGCTAATTAAACTGNTG-ATAGTGATGTTTTCCTTTATAA-AAGCGANAGATA-TC----GC-CTT-G-----TGCA-CCCCCCCTAT-CTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTCTC-CATGTAACA-ATAAAA--ATNTTGGTGATAC-TACGAGAGATATCAGT-TATA-ATATGTAANTT--C--AAAAAAAAAAAATTACATTTCNCTCT--CCCGTACTTA-CGAT--TATAAT-TACCTTGAA-ATTACGACTGAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTGTGATATCTGCATT----ATGCTCTCCA-ATTCTATTTCCATTATTGTT-T-CGA-A-TGCTTTTTAAATCA-CAG-CCTATAGTTCTAAGTACACCATACGATCAACCTTACTGCATGCG--TGAAAGTTTATTAACGTATTTCAA--ACATCCAGGGA-AAAAANCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATGGTAGGCCTGTATACTGTCGCGCCGAGGANTGTTAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGACAATATTGATACAATCCGANNNTTTTNACAAAAGTATANTATAGCGATATNATNAGTTA
gi|1 : GCTCCAAGG-GCAAAAAATCGGCCC-C-ATCT--CGGGAATATGAA-T-TA-TTTTTT-CCTGA----ATG-T-T-GCTA---TGGGATGT--CCTGTG--TTTC----TTAAAA--AAT-AAAT--A-CCAAGT-AG--TCCA---GG-GAAATTTAAATCTGCGACGGATAAA--TTAAGG-A--TTAAAGTTGGG--AGCACTCT---AC----GAACAGAA-CGTT-A-GA-A--ATACGC-TTT-ATT-GCGTTAT----G----ATAA--CACACTTTACT-T-CGAGACAATACTGTTTAATGATATTAA--TGGAGATTACTCGA--T-C--AGACACA-TAAAAAGC-AAATTT-TTTG-TT-GTACAAAGGC-CCCTGGTTACAGCTAGAATTATCC-TATTGGT-TTGTCATACA-TGTACA-TACATGTATCCCCATCGGCGTTGGTTC-ACAGAATGCAATGCGCG-TCGAA-TGCAAC--ATATTTCGAAAA-TG-CAC-TCA-TATTTTTAC--AAAGTTATTAATGTT--ATT-TCTCTATTTTTCA---TCTCA-TTAATTGGA-TA-C---A-CCCA-CCT-GA-TG-TCTCTCTCATC-AAATAT-CGATCAAACCCACTAAAAATTTTTTATTTGGATTT-GATCAAGCAAAAGTGTT-CACAATTTAA-GCAGAAAATA--TACCGGTACCCTGTAC-ACGAAGAGAGAGGATTCGCTTTGGAAAAT-AACTTGTTTACTTTC-AC--TT-------CAATATGCCGTCGTTTTATAGATAC-TCTATACAACAGCGATTATAGATTCGTA-TGCTTTCTTTTT---GAATGAAATATCGCATATTTAA-A-GTA-------T---TTAT--AAAATCGCTAACCAATATA-TACAACATCGTCACTGTGGCGGATTTATACCA-CGTAGATCTACAA-A-TACGCCG-ATATGTTTGACTAT---GTCTTTTGCATTCA---TCTCA-CTCGCGCAACATGTTAATT-CAGTTTATAGTTC--TTGAGTGTGT-GTATGTGGGTGGGGGTTGCTCCTAT--TTTCTTCCG--AAGAGTGTCGAGAGTTGTGTATAGCGCTAAATTAACTGGTG-ATAGTGATTTTTTTCTTTATAA-AAGCGAGAGATAATT----GC-CTTAG-----TGCAACCCCCCCTAT-CTAAATCCTCACATCAATAGACATAGGGCTACTGATTTTGCTTCTCTCATGTAACAGATAAAA--ATGTTGGTGATAC-TACGAGAGA-ATCAGT-CATAGATATGTAAATAAAC--AGAAAAAAAGAATTACATTTACCTCTTACTCGTACT-A-CGAT--TA-AATGTACCACGAAGATTACGCGAGAGT-ATA-TA-TATCGTGAT-AATGGTC--GTGTGATACATGTATTCTGGATGCTCTCCA-ATTCTATTTCCATT-TTGTTGT-CGA-A-TGCTTTTTAATTCAACAGGCCTATAGTCCTAAGTACAC--TACG-TCAACTTTACTGCATGCGAGTGAAAGTTTATTAACGTATTTCAA--ATATCCAGGAA-AAAAAACCTGATGGATAATAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGGGCCTAATAA-----TAAAC--------------------TGCGGCATTTATTCC-GGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTT---TTGTAGACCTCATAGTAGGCCTGTATACTGTCGCGCCGA-GACTG-TAAGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTGATACAATCCGACTTTTTTAACAAAAGTATACTATA---ATATTATTAGTTA
gi|10 : CTTTAAAG-GTGAAAA-TCAGCCC-C-ATCT---AAAAAT--GAA-T-CA-CATTTC-TCTGA----ATG-TAT-GCTA---AGG-TTG-----TGTA--TTTC----TT-AAA--AAC-AA-C--A-C
gi|11 : AAGG-CTGAAAA-TCAGCCCAC-ATCT---AAAAATC-GAA-T-CA-CATGTC-TCTGAC---ATG-T-A-TCTA---AGG-TTGT--GATAT---TTTC----TTAAAA--ACA-AA-C--AACCAAAT-TG--TTCGTCTGACAAAATTTA---C---GACAGA-AAAATTTAAGG-A--T-AAAGTTnnnnnnnnnnnnnnnnnnnnnnnnnacaaccaaattgttcgtctgacaaaatttacgacagaaaaatttaaggataaagtt
gi|12 : aGCTCAAAGG-GCGAAAA-TCGGCCC-C-ATCT--CGGAAAT--GAA-A-CA-TTTTTT-CTTGA----ATGTT-T-GCTA---TGG-ATGT--A-TGT---TTCT----TTAAAA--GTT------------AGT-AG--TCCA---GG-GAAA-TTAAATCTG-GA-AGA-AAA--TTAAG
gi|13 : tagggTCAAC-TTACTGCATGCG--TGAAAGTGTATCAACGTATTTCAAATACATCCAGGGATGAAAACCCTGATGGAT----ACAATTGTATAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAA
gi|14 : gAAAAAATTACATTTCACTCT--CTCGTACTTAACGATAATATAAT-TACCTTGGA-ATTATGACTGACT-AAA-TA-CCTCGTGAT-AATGGTC--GTGTGATATCTGCAT
gi|15 : GAGT-AAA-TA-TCTCGTGAT-AATGGTC--GTATGATATCTGC-------ATGCTCTCCA-ATTCCATTTCTATTATTG---------------TTTTAAATCA-CAG-CCTATAGTTCTAAGTAC
gi|16 : cAAA-TCGGCCC-C-ATCT--CG-AAAT--GAA-T-TA-TTTTT--CCTGA-----TGCT-T-GCTA---TGG-ATGT--C-TGTAAGTTGCATATTTAAAAGTAAT-AA-
gi|17 : ggtaggggctccGCTCCCAGG-GCGAAAA-TCGGCCC-C-ATCT--CGGAAAT--TAA-C-CA-TTTTTT-CCTGA----ATG-T-TAGCTA---TGG-t
gi|18 : taggAAGC-AAATTT-TCTG-TTTGTACAAAGGC-CTCTGGTTACAGC-AGAATTATCC-TAT-GGT-T-GT
gi|19 : aattGTTCTAAGG-GCGAAAA-TCGGCCC-CTCTCT--CAGAAAT--AAA-C-CA-TTTTTT--CTGA----ATA-T-T-
gi|2 : ggCTCCAAG---CGAAAA-TCGGCCC-C-ATCT--TCGGAAT--GAAAC-TA-TTTTTT-CCTGA----ATG-T-TTGCTA---TGG-AT-T--C-TGT---TT-C----TTAAAA--AATTAA-C--A-CCAA-T--G--TCCA---GG-GAAATT--AATCTG-GACTGA-AA---TTAAGG-A--A-AATGGTGGT--AGCACTCTCCAGC----G-TCAGAAACGTT-A-GACA--ATACGC-TTT-ATTTACGTTATCACCG----ATAA--CACA-TTTACT-TTCGAGAC--TACTGTTTAATGAAATTAACCTGGAGAT-CCCTGA--TTC--AGAAACA-TAAAAAGC-ACATTT-TTT---TTGTACAAAGGC-CCCTG-TTA--GC-AGAATTACC--------------------ATGTTCACTACAT-TATCCCCATCGGCGTTGGTCC-A-AGAATGCA-TGACAG-TC--A-TGCAACC-ATTTTCCGAAAAATG-CGCCTCA-TATTT--AC--AAAGTTATTAATGTTT-ATT-TCTC-ATTTT-CA---TCTC--TTAATTAT--TA-C---A-CCCA-CCT-GA-TG-TCTCTCT-ATC-AAATAT---GTCAAACC-ACAAACAATTTTTT----GGATTC-G-TCGA---AAAGTGT-ACACAATTTAAAGCAGAA--TA--TACCGGTACGTT-TAC-ACAAAGAGAG-GGAT-CGCTT--GAATAT-AACTTGTT-ACTTTCCAC--TTAG--AACTAG-ATGCCATCGTTT-ATAAATACCTCCTCACGTCAA--ATTGTAAAT-CGTAATGCTTTCTTTTTATCGAATAAAGT--TACATATTCAAGAAGTAATAA--AT-AATTATCAAAA-TCACTAACCAATATA-TACA-CATCATCACTGTGGCGGATTT-TACAA-CGTA--TGTACAATA-T-CGC-GTATATCTTT-----T---GACGTT--CAGTTA---TCTCAACTCGCA-AACGTGTTA----C--TTTATCGTTC----GAGT-TGT-GTATGTGGGTGGGGGTTACT-CTATACTTTCTTCC---AAGAGTGT---AAGTT-TGC---GC-TTAATTAAAATGCTA-CTAATG-TGTTTTCTTTTATGACAAGCGGAAAAT--TC----GCTTTT-GCGTTTTGCA-CCCCCCCCCTACTAAATCCCCTCATCAATGGACATAGGCCTAC--ATTTT-CTTTTC-----TAACA-ATGAGA--AGTTTGGTGATACTTACGAGAT-TATCAGT-TATA-ATATGTAATTT-----AAAAAAAAATAATAACATTTCACTCT--CCCGTACTTA-CACA--TATAAT-TA-CTTGAACATTA-----GAGT-AAAGTATTCTCGTGATCAATGGGT--GTGTGATATCTGCA------ATACTCTCAACATTC--TTTTCATTATTGTT-T-TGACA-TGCTTTTTAAATCA-CCC-GCTATAGTTCTAAGTA-ACCATACGATCCACC-TACTGCAT-CG------AGTTTATTAACGTATTTAAT--ACATCTAGG----AAAAACCTGATGGATA-TAAT-ATTGTGTAGAAAATTTATATAAGTTCCAGACTAATGGTAAGGTAGGGCCTAATAATTAACTAAACTATCATTATGATTTGATGACTGCG-CATTCATTCCGGGTGTT-ATTGTATAAATGTC-TCGGTGACCTGATTATTGC-----TTGTAGACTTCATGGTA-GCCT-TATGCTGTTCCGCTGAGGAATGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATAACCAGTCGAC----TTG----AATCTGAAAGTTTTCA-AAAAGTATAGTATAGCGATATGATGAGTTA
gi|3 : T-TACA---GTAG-TCTACAA---TACGC-G-AT--GTTTGACT-T--------T--CAGTC----TCTCA-CTCGCGTCACATGT-AATTGCA-TT-ATAGTTCCTTTCGGTGTGT-GT-TGTGGGTGGG--TT--CCCTATA-TTTCTTCCACCAAGAGTGCCAAG--TTGTGC----TGCTAATTAA-CTGTTGTATAGTGAAGTTTT--TTTATAA-AAGCGATGGAAA-TTCTTTGC-CTT---------CA-ACCCCC-TAT-CTAAATCCC-TCATCAATG-ACATAGGCCTAC--ATTTTTCTTCTTACATGTA-CA-ATAAAAGTATATTGAT-ATAC-TAC-AGAGATATCAGTATATA-ATATGTAACTT--TTTAAAAAAAAAACATTTCACATCTCTCT--TCGCTACTTA-CG------CAAT--ACCTTGAA-ATTACGACTGAGTTAAA-C--TCTCGTGA--AATGGTCCAGTGTGAT-TCTGCATT----GC-CTCTC---ATTATATTTCCATTATTGTT-TTCGA-AATGCTTTCTTAATCA-CAG-CCTATAGC-CTAAGTACACCATACAATCAACCTTACTACATGCG--TGAAAGTTTATTAACGTATTT--A--A---------A-AAAAACCCTGATGGATA-TAATAATTGTGTAGAAAA-TTA-ATAAGTTCCAGGATAAT-GTAAGGTAGG-CCTAATAA-----TAAAC--------------------TGCG-CATTTATTCC-AGTGTTGATTG--TAAATGTCTTCGGCGAC--GA-TA-TGCTTAAATTGTAGACCTCATGGTAGGCCTGTATACTGT
gi|4 : tttacacgCTCCAAGGCGCGAAAA-TCGGCCC-C-ATCT--CGG-AAT--GAA-CTTA-TTTTTT-CTTGA----ATGTT-T-TCTA---TGG-ATGT--C-TG----TTTC----TTAAAA--AAT-AA-CTAA-CCAAGT-AGA-TCCA----G-GAAATTT-AATCTG-GACA-A-AAA--TTAAGG-A--T-ATAGTTGGGGAAGCTTCCT---GCCATTCTTCAGAAACGTT-A-GA-A--ATATAC-TTTAATT-ACGTTATATCCG----GTTA---ACA-ATTACTATTCG-GA---TACTGTTT-ATGATATTAGC-TGGAGAT-ACTCGA--T-CAAAGAAACA-TAAAAAGC-AAATTTATCTG-TTTGTACAAAGGCTCCCTGGT--CAGC-AGAA-TATCC-TAT-GGTCT-GTCATGCAATGTACA-TACA-GTATCCCCATCGGCGTTGTCCCCACAGAATGCA-TGACA--TCTAA-AGCAACC-ATATTTTCAAAA-TG-CAC-TCA-TA---TTAC--AAAGTTATTAATGTTT-ATTCTTCCTA--TTTCATGTTGTCA-TTAATTAT--TA-CATTA-TCCATCCTCTA-TGTTCTCTCAAATC-AAATATTCAGTCAAA
gi|5 : TATA-CCGT---ATAAACCACA-TTTACT-TTCGAGA---TA-TGTTATATGATATTAGC--GGAGAT-ACTCGA----C--AGAAACA-TAAAAAGC-AAATGT-TCTG-TTT-TACAAAGGCTCTCTGATTACAGC-AGAATTATCC-TAT-GGT-T-GTCATGCAATGTAC---ACATGTATTCCCATCGTCGTTGGTCCCACAGAA-GCA-AGACAGTTCTAATTGCAACCGATA-TTCG-AAA-TGCCAC-TCAGTATTTTTAC--AAAATTATTAATGGTT-ATT-TCTATATTCTTCAT--TCTCA--TAATTAT--TACC---ACCCCA-CCT-GA-TG-TCTCTC--ATC-AAATATC--GTCAAAACCAC-AACAATTTTTCTTCTGGATT--GATCAAGC-AAATTGTTACAC-ATTTAA-GCAGAAAATATTTA-CGGTACGTT-TACTACAAAGAGAGAGGAT--GCTT--GAAAATAAACTTGTTTACTTTC-ACCTTTAGCAA-CTAATATGCCCTCGacaca
gi|6 : GA-GCGAGA---CGGCC----ATCTTACGAAAAT--GAA-G-TAGTTTTTTGCCTGAGCTGATT-T-A-GCTAAAATAG-ATGTTTC-TGA---TTTC----TTAAAA--A-T-AA-C--A-CAAGGTTAG--TCCA---GG-GAAAT--AAATCTG-GACCGA-AAA--TTAAGG-ACTT-AGA-TTGGG--AGCACTCC---AC----GTTTAGAAACGTTGA-AA-A--ATACGCCTTT-ATT-GCGTTATATACATAATGTAA--CACA-TTCGTT-TT-GAGAC--TACTGTTTAATGATATAAAC-TGGAGAT-ACTCGAATT-C--AGAAACATTAAAAAGCAAAATTT-TCTGTTTTGTACAAAGGCCCCTTGGTTACAGC-AGAATTGCCCGTAT-GGT-T-GTCATgattgagaatttactaaacccattttcac
gi|7 : tgccaggggaaaatGT--TGCATATTTAA-AAGTAATAATAATTA-TTAT--AAA-TCGCTAACCAATATAATACAACATCGTCACTGTGGCGGATTT-TACCAGCGTAG-TCTACAA-AATACGC-G-ATATGTTTGACT-TTCAGTTTTTG-CATTCAAAATCTCA-CTCGCGTCACATGTTAATT-CA-TTTATAGTTC--TTGAGTG-GTGGTATGTGGGTGGGGG-TACTCCTATA-TTTC
gi|8 : CCCCATCGCCGTTGGTCCCACAGAACGT--TGACAG-TCTAA-TGCAACC-ATATTTCG-AAA-TG-CAC-TCACTATTTTTACAAAAAGTTATTAAAGTTTAATT-TCTCTATTTGTCA---TCTTACTTAATTATGCTA-C---A-CCCA--CT-GACTG-TCTCTC--ATCTAAATATTCG--CAAACCCACAAACATTTTTTTCTTTGGATTTAGATGAAGCAA
gi|9 : GCTCCA-GG-GCGAAAA-TCG-CCC-C-ATCT--CGGAAAT--GAA-C-TA-TTTTTT-CTTGA----ATG-T-T-TC-A---TGG-ATGT--C--G-----TTC----TTAAAA--AAT-AA-C--A-CCAAGT-AGGATCCA---GG-AAA---TAAATT---GACG---AAA--TTAAGGCA--T-AAAGTTGGG--AGCCCTCC---AC----GTTCA-AAAC-TT-ATGA-AATATACGC-TTT-A-T-ACGTTATAcaa