lowQualScore : 111111111111 111111111111111111
lowQualScore : 1 2 1111 1 1 1111111 111111 111 77777777777777777777777777777777777777777777 1111111 1 777777777 111 1 1 1 1 1 2222222 000000000000 3 1 1 2 1 88888888888888 999999999999999999 11 11 11 88888 1 4444444444 2 4 333 1 333 222222 111 666666666666666 4 1
lowQualScore : 6 5 77 6 1 6 8 7777 0 0 00 9999999 5 66 444444 5 0 2 77 444 5 88888888888888888888888888888888888888888888 5 5 9999999 1 222222222 777 5 6 6 8 0 8 6 7777777 111111111111 8 0 6 0 0 0 3 0 0 11111111111111 6 99 6 1 999999999999999999 7 88 44 88 44444 3 3333333333 7 6 0 111 5 888 8 3 000000 777 999999999999999 8 0 8 0 6
lowQualScore : . . .. . . . . .... . . .. ....... . .. ...... . . . .. ... . ............................................ . . ....... . ......... ... . . . . . . . ....... ............ . . . . . . . . . .............. . .. . . .................. . .. .. .. ..... . .......... . . . ... . ... . . ...... ... ............... . . . . .
lowQualScore : 7 7 99 7 7 0 8 9999 0 0 22 8888888 6 99 444444 0 1 5 99 444 7 11111111111111111111111111111111111111111111 0 7 1111111 4 555555555 000 0 0 0 0 6 0 0 0000000 000000000000 0 0 0 8 0 0 2 1 7 33333333333333 7 22 7 0 000000000000000000 3 33 77 33 00000 3 7777777777 3 7 0 000 0 000 0 6 000000 000 444444444444444 0 0 0 8 0
consensus : GCCAAGGTGTTTTTAACT-TC--ACAGGACATTT-GGTCCGGTAAA-T-GTT-AGA-GATGTTA-CCGGA-CCG--AACA------A-CATTTTACCGGACCGAATTG--AAAGA--GACCTT-ATTAGCTGG---------------------TA---TA----A------A----ATA-AAAAATATTTAAATTTTT-AAAAATTAAAA-A--AAAAANCAACTTAGAAATAAACTTAATTTC-AAACAC-ATATTTATTTC-----ACTTGGATACATTACGTTCATT-AGTCT-TACCAGAATGACCACATATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-TGC-C--GCA---GAGGCCT-C--GACGTGTGC----------G-TT----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAA-TGTCTCTATAGATTGTTCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCGTT--ATAG-GACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
Reference ( gi|1 ) : GCCAAGGTGTTTTTAACT-TC--ACAGGGCATTTTGGTCCGGTAA--T-GTT-AGA-GATGTTA-CCAGA-CCG--AACA------A-CATTTTACCGGACCGAATTG--AAAGA--GACCTT-ATTAGCTGG---------------------TA---TA----A------A----ATA-AAAAATATTTAGATTTTT-AAAAAT---------AAAAACCAACTTATAAAT-AA-TTAATTTC-AAACAC-ATA-TTATTTC-----A-TTGGA-A----------ATT-AGTCTCTA-CAGAATGACCAC-TATCATCCTCCCAAACTTCCGCCAGAGTTCGTTCTAC-C--GCA---GAGGCCT-C--GACGTGTACCCTTCACGATG-TTCCAATTCATAATTTTTCC--ATAAATGAAATTAAA--AGCATAAAGTTTACATCATTTT-CGTCCTCCTGACCAATCTCAAAATTAATTAAAC-AAAAAATTACTACTTTTCTTCT-A-TGTCGCTATAGATTGTC--CGATGCA-TAGTGTGCA-C----TTCATTAC-A-TTTT-AGATGCGTT-TATAG-GACAAGTCAT-GTCG-ATTCTCAG-ACCATTTAGTATT
gi|8 : GCCAAAGTGTTTTTAACT-TCAAACAGG--AATTTGGTCCGGTAA--T-GTT-AGA-GATGTTA-CCGGA-CCG--AACA------A-CATTTTACCGGA-CGAATTG--AAAGA--GACATT-ATTAGCTGG---------------------TA---TA----A------A----ATATAAAAATATTTAAATTTTTAAAAAAT---------AAAA
gi|16 : agtcgatGCCAAGGTGTTTTTAACT-TC--caaaaa
gi|6 : gcagtcgatCCAAGGA--TTTTAACT-TC--A-AGGACATTT-GGTCCGGAAA--TCGTTTAGATAATGTTA-C--GA-C-G--AACA------A-CATTTTACAGGACCGAATTG--AAAGA---ACCTT-ATTAGCTTG---------------------CA---TATTTCATTGGTTA----ATA-AAAAA-------ATATTT-AAAAAC---------CCAAAC--ATTTAGAAAT-AACTTAATTTC-AA--AC-ATA-TTATTTC-----ACTTGGATACATTACGTTCATT-AGTCT-TA-CAGAATGA-CAG-TATCATC
gi|5 : aCCAAGGA--TTTTAACT-TC--A-AGGACATTT-GGTCCGGAAA--TCGTTTAGATAATGTTA-C--GA-C-G--AACA------A-CATTTTACAGGACCGAATTG--AAAGA---ACCTT-ATTAGCTTG---------------------CA---TATTTCATTGGTTA----ATA-AAAAA-------ATATTT-AAAAAC---------CCAAAC--ATTTAGAAAT-AACTTAATTTC-AA--AC-ATA-TTATTTC-----ACTTGGATACATTACGTTCATT-AGTCT-TA-CAGAATGA-CAG-TATCATC
gi|9 : aCCAAAGTGTTTT-AACT-TC--ACAGGACATTT-GGTCCGGTAA--T-GTT-AGA-GATGTTA-------------------------------CCGGACCGAATTG--AAAGA--GACCTT-ATTAGCTGGACAGGTAATTATTTCATTAGCTAATTTA----A------AGAATATA-AAAAAAATTT--TTTTTT-AGAAA
gi|7 : tcgataCAAGGTGTTTTTAACTCTC--ACAGGACATTT-GGTC--GTAA--T-GTT-AGA-GA-GTTA-CCGGA-CCG--AACA------A-CATTTTAC-GGACCGAATTG--AAAGA--G-CCTT-ATTAGCTGG---------------------TA---TA----A------A----ATA-AAAAATATTTAAATTTTT-AAAAATCAAAACA--AAAAATTAACTTAGAAAT-AA-TTAATTTC-AAACACAATATTTATTTC-----A-TTGGATA----------ATT-AGTCTCTA-CAGAATGACCACATATCAT
gi|2 : TTTTTAACT-TC--ACAGGACATTT-GGTC-GGTAAA-T-GTT-AAA-G-TGTTAACCGGAACCG--AACA------AACATTTTACCGGACCGAATTG--AAAAAAGAACCTTAATTAGCTGG---------------------TA---TA----A------A----A-A-AAAAATATTCAAATTTTTAAAAAATTAAAAAAAAAAAAAACAACTTGGAAATAAA-TTAATTTCAAAACAC-ATATTTATTTCCAAAAA-TTGGATA----------ATTAAGTCT-TACCAGAATGACTACATATCATCCT-CCAA--TTCCGCCAGA----------------------AGGCCTCC--GAC-TGTGC----------A-TT----TTCATAATTTTTCCCAATAAATGAAATAAAA--AGCA-----TTTACATCATTTTCCGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAA-TGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCAGC----TTCATTAC-A-TT---------------TAG-GACAAGTCATGGTCACATTCTCGGAACTATTTAGTAT
gi|8 : TTCGTCCGGTAAAAT-GTT--------GTT---CGGT-CCGGTAACATCTCTAA-CATT--ACCGGACCAAATT
gi|3 : agtcgatgccaaagtgtttttaacttcaaacaggGGTC-GGTAAA-T-GTT-AAA-GATGTTA-CCGGAACCG--AACA------A-CATTTTACCGGACCGAATTGAAAAAAA--GACCTT-ATTA-CTGG---------------------TA---TA----A------A----A-A-AAAAATATTCAAATTTTT-AAAAATTAAAAAAA-AAAAAACAACTTGGAAATAAA-TTAATTTC-AAACAC-ATA-TTTATTC-----A-TTGGATA----------ATT-AGTCT-TACCAGAA-GACTACATATCATCCT-CCAAACTTCCGCC--------------------A---GAGGCCT-CTGGAC-TGTGC----------A-TT----TTCATAATTTTTCC--ATAAATGAAA-TAAA--AGCAT----TTAACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAA-TGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCA-C----TTCATTAC-A-TT---------------TAG-GACAAGTCATGGTCA-ATTCTCGGAACTATTTAGTATttgaaagagacattattagctggtataaaatataaaaatatttaaatttttaaaaaataaaacaaaaa
gi|12 : C-CATTATCCGCC-AAACTTCCGCTGGAGTTCGTT-TGCAC--GCAGATGAGGCCT-C--GACGgaattta
gi|4 : gTTCCAAACTTCCGCCAGAGTTCGTT-TAT-CACGCA---GAGGC-T-C--GACGTGTACCCTT-ACG-TGATT----TTCATAATTTT-CC--ATAAATGAA-TTAAAGAAGCAT-----TTACATCATTTT-CGTC---------------AAAATTA-TGAAAC-AAAAAATTACTAC-TTTCTTCTAA-TGTCTCTATAGATTGT---CGATGCA-TAATGTGCA-CAAGTTTCAATAC-CTTTTT-AGATGCGTTACATA-----AAGTCATGGTCA-A-TCTCAG-ACCATTTAGTATTgagagt
gi|13 : CCCAAACTTCCGCCAGAGTTCGTT-TGCGT--GAT---GAGGCCT-C--GACG
gi|14 : CAAACTTCCGCCAGAGTTCGTT-----T--GC-----AGGCCT-C--GACGgagagta
gi|15 : AAACT-CCGCCAGAGTTCGTTTAACAC--GCA---AAGGCgggag
gi|10 : TTCT-AATGTCTCTATAGATTGTC--CGATGCAATAGTGTGCA-A----TTCATTAC-A-TTTTTAGATGCGAT-TATAG-GATAAGTCATGGTCG-ATTCTCGG-ACCATTTA
gi|11 : ATGCA-CAGCATGCT-C----TTCATTACTT-TTTT-TGTTGCGT----CAGAGACAAGCCATCGTTG-ATTTTCAG-
Alignments
lowQualScore : 1 1 1 1 1111111 111 4444444444444444 22222222222222222222 22 111 222222 7777777777 1 2 11 444444444444444 88888888888888888 11 11 22222 1 2 1 1 11 111111 111 2222222222222 2
lowQualScore : 4 5 66 4 5 8 66 3 0 0 0 5 2 0 2 6666666 5 5 5 4 66 66 444 5 2222222222222222 3 5 3 0 0 55555555555555555555 7 7 22 6 6 333 444444 3333333333 3 3 6 00 9 111111111111111 5 77 4 99999999999999999 3 33 66 33 44444 9 0 2 0 0 3 3 3 0 0 11 6 6 555555 222 5555555555555 2 2 6 0
lowQualScore : . . .. . . . .. . . . . . . . . ....... . . . . .. .. ... . ................ . . . . . .................... . . .. . . ... ...... .......... . . . .. . ............... . .. . ................. . .. .. .. ..... . . . . . . . . . . .. . . ...... ... ............. . . . .
lowQualScore : 3 0 99 3 7 8 55 2 0 0 0 0 5 0 5 2222222 0 0 0 5 99 99 555 0 6666666666666666 2 0 2 2 8 00000000000000000000 3 3 33 7 7 555 333333 5555555555 3 3 7 88 3 666666666666666 7 99 3 00000000000000000 2 88 55 88 55555 8 0 5 0 0 2 2 2 0 8 88 7 3 000000 777 8888888888888 5 5 7 4
consensus : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC--AAAA-AAAAAA----CAACTTAGAAATAAA-TTAATTTCAAA-CAC-ATATTTATTTC----A-TTGGATA-ATTA-----ATTAGTCT-TA-CAGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGCCCTT----G-ATT----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
Reference ( family-742 ) : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TT--AAAA-AAAAAAN---CAACTTAGAAATAAACTTAATTTCAAA-CAC-ATATTTATTTC----ACTTGGATACATTACGTTCATTAGTCT-TACCAGAATGACCACATATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGC----------GTT----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
gi|1 : GCCAAGGTGTTTTTAACT-TC--ACAGGGCATTTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCAGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAGATTTTTAAAAA-T---------AAAAAC---CAACTTATAAATAA--TTAATTTCAAA-CAC-ATA-TTATTTC----A-TTGGA-A----------ATTAGTCTCTA-CAGAATGACCAC-TATCATCCTCCCAAACTTCCGCCAGAGTTCGTTCT-AC-C--GCA---GAGGCCT-C--GACGTGTACCCTTCACGATGTTCCAATTCATAATTTTTCC--ATAAATGAAATTAAA--AGCATAAAGTTTACATCATTTT-CGTCCTCCTGACCAATCTCAAAATTAATTAAAC-AAAAAATTACTACTTTTCTTCT-ATGTCGCTATAGATTGTC--CGATGCA-TAGTGTGCA-C----TTCATTAC-A-TTTT-AGATGCGTTTATAGGACAAGTCAT-GTCG-ATTCTCAG-ACCATTTAGTATT
gi|10 : TTCTAATGTCTCTATAGATTGTCCG--ATGCAATAGTGTGCA-A----TTCATTAC-A-TTTTTAGATGCGATTATAGGATAAGTCATGGTCG-ATTCTCGG-ACCATTTA
gi|11 : ATGCA-CAGCATGCT-C----TTCATTACTT-TTTT-TGTTGCG-TCAGA-GACAAGCCATCGTTG-ATTTTCAG
gi|12 : ATTATCCGCC-AAACTTCCGCTGGAGTTCGTT-T-GCAC--GCAGATGAGGCCT-C--GACGtattgcactaggagaa
gi|13 : gccCCCAAACTTCCGCCAGAGTTCGTT-T-GCGT--GAT---GAGGCCT-C--GACGgagagt
gi|14 : CAAACTTCCGCCAGAGTTCGTT-T-GC-----------AGGCCT-C--GACGgagagta
gi|15 : AAACT-CCGCCAGAGTTCGTT-TAACAC--GCA---AAGGCgggag
gi|16 : GCCAAGGTGTTTTTAACT-TC--
gi|2 : gcagtcgatTTTTTAACT-TC--ACAGGACA-TTTGGTC-GGTAAAT-GTT-AAA-G-TGTTAACCGGAACCGAAC-------AAACATT-TTA-CCGGACCG--AATTG--AAAAAAGAACCTTAATTAGCTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAAATT--AAAA-AAAAAAAAAACAACTTGGAAATAAA-TTAATTTCAAAACAC-ATATTTATTTCCAAAAATTGGATA-ATTA--------AGTCT-TACCAGAATGACTACATATCATCCT-CCAA--TTCCGCCAGA-----------------------AGGCCTCC--GAC-TGTGC----------ATT----TTCATAATTTTTCCCAATAAATGAAATAAAA--AGCA-----TTTACATCATTTTCCGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCAGC----TTCATTAC-A-TT--------------TAGGACAAGTCATGGTCACATTCTCGGAACTATTTAGTAT
gi|3 : GGTC-GGTAAAT-GTT-AAA-GATGTTA-CCGGAACCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAAAAAG--ACCTTA-TTA-CTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAA-TTAAAAAA-AAAAAAA---CAACTTGGAAATAAA-TTAATTTCAAA-CAC-ATATTTA-TTC----A-TTGGATA----------ATTAGTCT-TACCAGAA-GACTACATATCATCCT-CCAAACTTCCGC---------------------CA---GAGGCCT-CTGGAC-TGTGC----------ATT----TTCATAATTTTTCC--ATAAATGAAA-TAAA--AGCAT----TTAACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCA-C----TTCATTAC-A-TT--------------TAGGACAAGTCATGGTCA-ATTCTCGGAACTATTTAGTAT
gi|4 : TTCCAAACTTCCGCCAGAGTTCGTT-T-AT-CACGCA---GAGGC-T-C--GACGTGTACCCTTACGTG-ATT----TTCATAATTTT-CC--ATAAATGAA-TTAAAGAAGCAT----TT-ACATCATTTT-CGTC---------------AAAATTA-TGAAACAAAA-AATTACTAC-TTTCTTCTAATGTCTCTATAGATTGT---CGATGCA-TAATGTGCA-CAAGTTTCAATAC-CTTTTT-AGATGCG-TTACATA--AAGTCATGGTCA-A-TCTCAG-ACCATTTAGTATTgaattta
gi|5 : CCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTG--AAAGA---ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC--CAAA-----------C-ATTTAGAAAT-AACTTAATTTCAAA-CAT-A---TTATTTC----ACTTGGATACATTACGTTCATTAGTCT-TA-CAGAATGA-CA-GTATCATC
gi|6 : aCCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTG--AAAGA---ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC--CAAA-----------C-ATTTAGAAAT-AACTTAATTTCAAA-CAT-A---TTATTTC----ACTTGGATACATTACGTTCATTAGTCT-TA-CAGAATGA-CA-GTATCATC
gi|7 : aCAAGGTGTTTTTAACTCTC--ACAGGACA-TTTGGTC--GTAA-T-GTT-AGA-GA-GTTA-CCGGA-CCGAAC-------AA-CATT-TTA-C-GGACCG--AATTG--AAAGAG---CCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC--AAAACAAAAAAT---TAACTTAGAAATAA--TTAATTTCAAA-CACAATATTTATTTC----A-TTGGATA----------ATTAGTCTCTA-CAGAATGACCACATATCAT
gi|8 : GCCAAAGTGTTTTTAACT-TCAAACAGGA-A-TTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGA-CG--AATTG--AAAGAG--ACATTA-TTAGCTGGTATA----A------A----ATATAAAAATATTTAAATTTTTAAAAA-AT--AAAA-CAAAAA
gi|9 : agtcgatCCAAAGTGTTTT-AACT-TC--ACAGGACA-TTTGGTCCGGTAA-T-GTT-AGA-GATGTTA-CCGGA-CCGAATTGAAAGAGA-CCTTATTAGCTGGACAGGTAATT-----------ATTTCA-TTAGCTAATTTA----A------AGAATATA-AAAAAAATTT--TTTTTTAGAAA-
Alignments
lowQualScore : 1 1 1 1 1111111 111 4444444444444444 444444444444444 111 2222222 555555555555 1 1 11 444444444444444 777777777777777777 11 11 22222 1 1 1 11 111111 111 2222222222222 2
lowQualScore : 4 5 66 4 5 8 66 3 0 0 0 5 2 0 2 6666666 5 5 5 4 66 66 444 5 2222222222222222 3 5 3 0 0 999999999999999 5 7 7 6 6 333 1111111 777777777777 3 3 6 33 9 111111111111111 5 77 4 222222222222222222 3 33 66 33 44444 9 0 2 8 0 3 3 3 0 0 11 6 6 555555 222 5555555555555 2 2 6 0
lowQualScore : . . .. . . . .. . . . . . . . . ....... . . . . .. .. ... . ................ . . . . . ............... . . . . . ... ....... ............ . . . .. . ............... . .. . .................. . .. .. .. ..... . . . . . . . . . . .. . . ...... ... ............. . . . .
lowQualScore : 3 0 99 3 7 8 55 2 0 0 0 0 5 0 5 2222222 0 0 0 5 99 99 555 0 6666666666666666 2 0 2 2 8 444444444444444 7 3 3 7 7 555 0000000 222222222222 3 3 7 00 3 666666666666666 7 99 3 888888888888888888 2 88 55 88 55555 8 0 5 8 0 2 2 2 0 8 44 7 3 000000 777 8888888888888 5 5 7 4
consensus : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAA----AAAAAA-CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC-----A-TTGGATA-ATTA-----ATTAGTCT-TA-CAGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
Reference ( family-742 ) : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAA----AAAAAA-CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC-----A-TTGGATA-ATTA-----ATTAGTCT-TA-CAGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
gi|1 : GCCAAGGTGTTTTTAACT-TC--ACAGGGCATTTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCAGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAGATTTTTAAAAA-T------------AAAAAC-CAACTTATAAAT-AATTAATTTC-AAACAC-ATA-TTATTTC-----A-TTGGA------A-----ATTAGTCTCTA-CAGAATGACCAC-TATCATCCTCCCAAACTTCCGCCAGAGTTCGTTCT-AC-C--GCA---GAGGCCT-C--GACGTGTACCCTTCAC-GATGTTCCAATTCATAATTTTTCC--ATAAATGAAATTAAA--AGCATAAAGTTTACATCATTTT-CGTCCTCCTGACCAATCTCAAAATTAATTAAAC-AAAAAATTACTACTTTTCTTCT-ATGTCGCTATAGATTGTC--CGATGCA-TAGTGTGCA-C----TTCATTAC-A-TTTT-AGATGCGTTTATAGGACAAGTCAT-GTCG-ATTCTCAG-ACCATTTAGTATT
gi|10 : TTCTAATGTCTCTATAGATTGTCCG--ATGCAATAGTGTGCA-A----TTCATTAC-A-TTTTTAGATGCGATTATAGGATAAGTCATGGTCG-ATTCTCGG-ACCATTTA
gi|11 : ATGCA-CAGCATGCT-C----TTCATTACTT-TTTT-TGTTGCG-TCAGA-GACAAGCCATCGTTG-ATTTTCAG
gi|12 : ATTATCCGCC-AAACTTCCGCTGGAGTTCGTT-T-GCAC--GCAGATGAGGCCT-C--GACGtattgcactaggagaa
gi|13 : gccCCCAAACTTCCGCCAGAGTTCGTT-T-GCGT--GAT---GAGGCCT-C--GACGgagagt
gi|14 : CAAACTTCCGCCAGAGTTCGTT-T-GC-----------AGGCCT-C--GACGgagagta
gi|15 : AAACT-CCGCCAGAGTTCGTT-TAACAC--GCA---AAGGCgggag
gi|16 : GCCAAGGTGTTTTTAACT-TC--
gi|2 : gcagtcgatTTTTTAACT-TC--ACAGGACA-TTTGGTC-GGTAAAT-GTT-AAA-G-TGTTAACCGGAACCGAAC-------AAACATT-TTA-CCGGACCG--AATTG--AAAAAAGAACCTTAATTAGCTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAAATT---AAAAAAAAAAAAAA-CAACTTGGAAATAAATTAATTTCAAAACAC-ATATTTATTTCCAAAAA-TTGGATA-ATTA--------AGTCT-TACCAGAATGACTACATATCATCCT-CCAA--TTCCGCCAGA-----------------------AGGCCTCC--GAC-TGTGC---------AT-T-----TTCATAATTTTTCCCAATAAATGAAATAAAA--AGCA-----TTTACATCATTTTCCGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCAGC----TTCATTAC-A-TT--------------TAGGACAAGTCATGGTCACATTCTCGGAACTATTTAGTAT
gi|3 : GGTC-GGTAAAT-GTT-AAA-GATGTTA-CCGGAACCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAAAAAG--ACCTTA-TTA-CTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAA-TTAAAAAAA----AAAAAA-CAACTTGGAAATAAATTAATTTC-AAACAC-ATATTTA-TTC-----A-TTGGA-----TA-----ATTAGTCT-TACCAGAA-GACTACATATCATCCT-CCAAACTTCCGC---------------------CA---GAGGCCT-CTGGAC-TGTGC---------AT-T-----TTCATAATTTTTCC--ATAAATGAAA-TAAA--AGCAT----TTAACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCA-C----TTCATTAC-A-TT--------------TAGGACAAGTCATGGTCA-ATTCTCGGAACTATTTAGTAT
gi|4 : TTCCAAACTTCCGCCAGAGTTCGTT-T-AT-CACGCA---GAGGC-T-C--GACGTGTACCCTTACGTGAT-T-----TTCATAATTTT-CC--ATAAATGAA-TTAAAGAAGCAT----TT-ACATCATTTT-CGTC---------------AAAATTA-TGAAACAAAA-AATTACTAC-TTTCTTCTAATGTCTCTATAGATTGT---CGATGCA-TAATGTGCA-CAAGTTTCAATAC-CTTTTT-AGATGCG-TTACATA--AAGTCATGGTCA-A-TCTCAG-ACCATTTAGTATTgaattta
gi|5 : CCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTG--AAAGA---ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC-------------CAAA-C-ATTTAGAAATAACTTAATTTC-AAACAT-A---TTATTTC-----ACTTGGATACATTACGTTCATTAGTCT-TA-CAGAATGA-CA-GTATCATC
gi|6 : aCCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTG--AAAGA---ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC-------------CAAA-C-ATTTAGAAATAACTTAATTTC-AAACAT-A---TTATTTC-----ACTTGGATACATTACGTTCATTAGTCT-TA-CAGAATGA-CA-GTATCATC
gi|7 : aCAAGGTGTTTTTAACTCTC--ACAGGACA-TTTGGTC--GTAA-T-GTT-AGA-GA-GTTA-CCGGA-CCGAAC-------AA-CATT-TTA-C-GGACCG--AATTG--AAAGAG---CCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAAC---AAAAAATTAACTTAGAAAT-AATTAATTTC-AAACACAATATTTATTTC-----A-TTGGA-----TA-----ATTAGTCTCTA-CAGAATGACCACATATCAT
gi|8 : GCCAAAGTGTTTTTAACT-TCAAACAGGA-A-TTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGA-CG--AATTG--AAAGAG--ACATTA-TTAGCTGGTATA----A------A----ATATAAAAATATTTAAATTTTTAAAAA-AT---AAAA----CAAAAA-
gi|9 : agtcgatCCAAAGTGTTTT-AACT-TC--ACAGGACA-TTTGGTCCGGTAA-T-GTT-AGA-GATGTTA-CCGGA-CCGAATTGAAAGAGA-CCTTATTAGCTGGACAGGTAATT-----------ATTTCA-TTAGCTAATTTA----A------AGAATATA-AAAAAAATTT--TTTTTTAGAAA-
Alignments
lowQualScore : 1 1 1 1 1111111 111 4444444444444444 444444444444444 111 2222222 555555555555 1 1 11 444444444444444 777777777777777777 11 11 22222 1 1 1 11 111111 111 2222222222222 2
lowQualScore : 4 5 66 4 5 8 66 3 0 0 0 5 2 0 2 6666666 5 5 5 4 66 66 444 5 2222222222222222 3 5 3 0 0 999999999999999 5 7 7 6 6 333 1111111 777777777777 3 3 6 33 9 111111111111111 5 77 4 222222222222222222 3 33 66 33 44444 9 0 2 8 0 3 3 3 0 0 11 6 6 555555 222 5555555555555 2 2 6 0
lowQualScore : . . .. . . . .. . . . . . . . . ....... . . . . .. .. ... . ................ . . . . . ............... . . . . . ... ....... ............ . . . .. . ............... . .. . .................. . .. .. .. ..... . . . . . . . . . . .. . . ...... ... ............. . . . .
lowQualScore : 3 0 99 3 7 8 55 2 0 0 0 0 5 0 5 2222222 0 0 0 5 99 99 555 0 6666666666666666 2 0 2 2 8 444444444444444 7 3 3 7 7 555 0000000 222222222222 3 3 7 00 3 666666666666666 7 99 3 888888888888888888 2 88 55 88 55555 8 0 5 8 0 2 2 2 0 8 44 7 3 000000 777 8888888888888 5 5 7 4
consensus : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAA----AAAAAA-CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC-----A-TTGGATA-ATTA-----ATTAGTCT-TA-CAGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
Reference ( family-742 ) : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAA----AAAAAA-CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC-----A-TTGGATA-ATTA-----ATTAGTCT-TA-CAGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
gi|1 : GCCAAGGTGTTTTTAACT-TC--ACAGGGCATTTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCAGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAGATTTTTAAAAA-T------------AAAAAC-CAACTTATAAAT-AATTAATTTC-AAACAC-ATA-TTATTTC-----A-TTGGA------A-----ATTAGTCTCTA-CAGAATGACCAC-TATCATCCTCCCAAACTTCCGCCAGAGTTCGTTCT-AC-C--GCA---GAGGCCT-C--GACGTGTACCCTTCAC-GATGTTCCAATTCATAATTTTTCC--ATAAATGAAATTAAA--AGCATAAAGTTTACATCATTTT-CGTCCTCCTGACCAATCTCAAAATTAATTAAAC-AAAAAATTACTACTTTTCTTCT-ATGTCGCTATAGATTGTC--CGATGCA-TAGTGTGCA-C----TTCATTAC-A-TTTT-AGATGCGTTTATAGGACAAGTCAT-GTCG-ATTCTCAG-ACCATTTAGTATT
gi|10 : TTCTAATGTCTCTATAGATTGTCCG--ATGCAATAGTGTGCA-A----TTCATTAC-A-TTTTTAGATGCGATTATAGGATAAGTCATGGTCG-ATTCTCGG-ACCATTTA
gi|11 : ATGCA-CAGCATGCT-C----TTCATTACTT-TTTT-TGTTGCG-TCAGA-GACAAGCCATCGTTG-ATTTTCAG
gi|12 : ATTATCCGCC-AAACTTCCGCTGGAGTTCGTT-T-GCAC--GCAGATGAGGCCT-C--GACGtattgcactaggagaa
gi|13 : gccCCCAAACTTCCGCCAGAGTTCGTT-T-GCGT--GAT---GAGGCCT-C--GACGgagagt
gi|14 : CAAACTTCCGCCAGAGTTCGTT-T-GC-----------AGGCCT-C--GACGgagagta
gi|15 : AAACT-CCGCCAGAGTTCGTT-TAACAC--GCA---AAGGCgggag
gi|16 : GCCAAGGTGTTTTTAACT-TC--
gi|2 : gcagtcgatTTTTTAACT-TC--ACAGGACA-TTTGGTC-GGTAAAT-GTT-AAA-G-TGTTAACCGGAACCGAAC-------AAACATT-TTA-CCGGACCG--AATTG--AAAAAAGAACCTTAATTAGCTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAAATT---AAAAAAAAAAAAAA-CAACTTGGAAATAAATTAATTTCAAAACAC-ATATTTATTTCCAAAAA-TTGGATA-ATTA--------AGTCT-TACCAGAATGACTACATATCATCCT-CCAA--TTCCGCCAGA-----------------------AGGCCTCC--GAC-TGTGC---------AT-T-----TTCATAATTTTTCCCAATAAATGAAATAAAA--AGCA-----TTTACATCATTTTCCGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCAGC----TTCATTAC-A-TT--------------TAGGACAAGTCATGGTCACATTCTCGGAACTATTTAGTAT
gi|3 : GGTC-GGTAAAT-GTT-AAA-GATGTTA-CCGGAACCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAAAAAG--ACCTTA-TTA-CTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAA-TTAAAAAAA----AAAAAA-CAACTTGGAAATAAATTAATTTC-AAACAC-ATATTTA-TTC-----A-TTGGA-----TA-----ATTAGTCT-TACCAGAA-GACTACATATCATCCT-CCAAACTTCCGC---------------------CA---GAGGCCT-CTGGAC-TGTGC---------AT-T-----TTCATAATTTTTCC--ATAAATGAAA-TAAA--AGCAT----TTAACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCA-C----TTCATTAC-A-TT--------------TAGGACAAGTCATGGTCA-ATTCTCGGAACTATTTAGTAT
gi|4 : TTCCAAACTTCCGCCAGAGTTCGTT-T-AT-CACGCA---GAGGC-T-C--GACGTGTACCCTTACGTGAT-T-----TTCATAATTTT-CC--ATAAATGAA-TTAAAGAAGCAT----TT-ACATCATTTT-CGTC---------------AAAATTA-TGAAACAAAA-AATTACTAC-TTTCTTCTAATGTCTCTATAGATTGT---CGATGCA-TAATGTGCA-CAAGTTTCAATAC-CTTTTT-AGATGCG-TTACATA--AAGTCATGGTCA-A-TCTCAG-ACCATTTAGTATTgaattta
gi|5 : CCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTG--AAAGA---ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC-------------CAAA-C-ATTTAGAAATAACTTAATTTC-AAACAT-A---TTATTTC-----ACTTGGATACATTACGTTCATTAGTCT-TA-CAGAATGA-CA-GTATCATC
gi|6 : aCCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTG--AAAGA---ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC-------------CAAA-C-ATTTAGAAATAACTTAATTTC-AAACAT-A---TTATTTC-----ACTTGGATACATTACGTTCATTAGTCT-TA-CAGAATGA-CA-GTATCATC
gi|7 : aCAAGGTGTTTTTAACTCTC--ACAGGACA-TTTGGTC--GTAA-T-GTT-AGA-GA-GTTA-CCGGA-CCGAAC-------AA-CATT-TTA-C-GGACCG--AATTG--AAAGAG---CCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAAC---AAAAAATTAACTTAGAAAT-AATTAATTTC-AAACACAATATTTATTTC-----A-TTGGA-----TA-----ATTAGTCTCTA-CAGAATGACCACATATCAT
gi|8 : GCCAAAGTGTTTTTAACT-TCAAACAGGA-A-TTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGA-CG--AATTG--AAAGAG--ACATTA-TTAGCTGGTATA----A------A----ATATAAAAATATTTAAATTTTTAAAAA-AT---AAAA----CAAAAA-
gi|9 : agtcgatCCAAAGTGTTTT-AACT-TC--ACAGGACA-TTTGGTCCGGTAA-T-GTT-AGA-GATGTTA-CCGGA-CCGAATTGAAAGAGA-CCTTATTAGCTGGACAGGTAATT-----------ATTTCA-TTAGCTAATTTA----A------AGAATATA-AAAAAAATTT--TTTTTTAGAAA-
blockSeqs : G C AA C . C TA A C T T A C A C TGAAAGA A A G C GT AA AGA A TTTCATTGGTTA T T A ATTAAAAAAAAA T A A A A TAT CAAAAA TACATTACGTTC C C C CA C TGCACGCAGAT C TG G CCTTACGTGATT T CA AT GA T T C C C . A A A . CC A T CAAGT TT TTTAGATGCGATT G G C A
blockSeqs : G . . C . C TA A C T T . C A C . . . . C . . G . TTTCATTGGTTA T . A TTAAAAAAAA . A A . . TAT AC TACATTACGTTC . C C CA C TAACACGCA . . G ATT T . A . T A . C . . A A A . TC . C GC CT TTTGTTGCGTC G C . A
blockSeqs : G . . C . C TA A . . . . C . C . . . . A . . G . AAGAAT T . A TCAAAACA . A A . . TAT AC TAATTA . . C CA T TATCACGCA . . G ATT . . T . . . . . . . . A . . TC . G A A TTAGATGCGTT G G . .
blockSeqs : G . . C . C TA A . . . . C . C . . . . A . . G . AA T . A ATAAAAC . . A . . . A TA . . . G . TGCGTGAT . . G . . G C A . T G . .
blockSeqs : . . . . . . A A . . . . C . C . . . . C . . . . AA T . A CC . . . . . . A TA . . . G . TGC . . . . T C A . . G .
blockSeqs : . . . . . . A . . . . . . . . . . . . T . . . . AA . . . CC . CA . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . AA . . . .
blockSeqCons : TA G** TAT AC***** TAATTA****** CA TGCGCGCA******* TC TTGTGCGTC****
originalCons : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAA----AAAAAA-CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC-----A-TTGGATA-ATTA-----ATTAGTCT-TA-CAGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-GC-C--GCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTT-AGATGCG-TTATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
finalCons : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTG--AAAGAG--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TC---AAAA----AAAAAA-CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTCAC-----TTGGATAATTA------ATTAGTCT-TA-CAGAATGACCACATATCATCCTCCCAAACTTCCGCCAGAGTTCGTTTGCGCGCA-------GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGCGTGCA-C----TTCATTAC-A-TTTTGTGCGTC----ATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
Alignments
lowQualScore : 1 1 1 1 1111111 22222 4444444444444444 333333333333 111 111 222222 4444444444444 1 11 444444444444444 777777777777777777 11 11 22222 1 1 1 11 111111 7777777777777777 2
lowQualScore : 4 5 66 4 5 8 66 3 0 0 0 5 2 0 2 6666666 5 5 5 4 66 11111 5 2222222222222222 3 5 3 0 0 999999999999 555 7 7 6 6 333 444444 4444444444444 3 6 6 6 00 1 4 0 111111111111111 5 77 4 222222222222222222 3 33 3 9 33 44444 9 0 2 8 0 3 3 3 0 0 11 6 6 555555 99 1111111111111111 6 2 6 0
lowQualScore : . . .. . . . .. . . . . . . . . ....... . . . . .. ..... . ................ . . . . . ............ ... . . . . ... ...... ............. . . . . .. . . . ............... . .. . .................. . .. . . .. ..... . . . . . . . . . . .. . . ...... .. ................ . . . .
lowQualScore : 3 0 99 3 7 8 55 2 0 0 0 0 5 0 5 2222222 0 0 0 5 99 44444 0 6666666666666666 2 0 2 2 8 444444444444 777 3 3 7 7 555 333333 3333333333333 3 7 7 7 88 0 3 1 999999999999999 7 99 3 888888888888888888 2 88 2 8 88 55555 8 0 5 8 0 2 2 2 0 8 88 7 3 000000 22 0000000000000000 7 5 7 4
consensus : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAGA--G--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TCAAAA----AAAAAA---CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC----A-TTGGATA-ATTA-----ATTAGTCT-TA-C-AGAATGACCACGTATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-G-CACGCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTCCGCGATGCA-TAGCGTGCA-C----TTCATTAC--ATTTT-A-A-TGCG-T--CATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
Reference ( family-742 ) : GCCAAGGTGTTTTTAACT-TC--ACAGGACA-TTTGGTCCGGTAAAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAGA--G--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TCAAAA----AAAAAA---CAACTTAGAAATAAATTAATTTC-AAACAC-ATATTTATTTC----ACTTGGATA-ATTA-----ATTAGTCT-TA-C-AGAATGACCACATATCATCCTCCCAAACTTCCGCCAGAGTTCGTT-T-G-CGCGCA---GAGGCCT-C--GACGTGTGCCCTT----GAT-T-----TTCATAATTTTTCC--ATAAATGAAATTAAA--AGCAT----TTTACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGCGTGCA-C----TTCATTAC--ATTTT---G-TGCG-T--CATAGGACAAGTCATGGTCG-ATTCTCGGAACCATTTAGTATT
gi|1 : GCCAAGGTGTTTTTAACT-TC--ACAGGGCATTTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCAGA-CCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAGA--G--ACCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAGATTTTTAAAAA-T---------AAAAAC---CAACTTATAAAT-AATTAATTTC-AAACAC-ATA-TTATTTC----A-TTGGA------A-----ATTAGTCTCTA-C-AGAATGACCAC-TATCATCCTCCCAAACTTCCGCCAGAGTTCGTTCT-A-C-CGCA---GAGGCCT-C--GACGTGTACCCTTCAC-GATGTTCCAATTCATAATTTTTCC--ATAAATGAAATTAAA--AGCATAAAGTTTACATCATTTT-CGTCCTCCTGACCAATCTCAAAATTAATTAAAC-AAAAAATTACTACTTTTCTTCT-ATGTCGCTATAGATTGTC--CGATGCA-TAGTGTGCA-C----TTCATTAC--ATTTTAG-A-TGCGTT--TATAGGACAAGTCAT-GTCG-ATTCTCAG-ACCATTTAGTATT
gi|10 : TTCTAATGTCTCTATAGATTGTCCG--ATGCAATAGTGTGCA-A----TTCATTAC--ATTTTTAGA-TGCGAT--TATAGGATAAGTCATGGTCG-ATTCTCGG-ACCATTTA
gi|11 : ATGCA-CAGCATGCT-C----TTCATTACTTTTTTT---GTTGCG-T--CAGA-GACAAGCCATCGTTG-ATTTTCAG
gi|12 : ATTATCCGCC-AAACTTCCGCTGGAGTTCGTT-T-G-CACGCAGATGAGGCCT-C--GACGtattgcactaggagaa
gi|13 : gccCCCAAACTTCCGCCAGAGTTCGTT-T-G-CGTGAT---GAGGCCT-C--GACGgagagt
gi|14 : CAAACTTCCGCCAGAGTTCGTT-T-G-C---------AGGCCT-C--GACGgagagta
gi|15 : AAACT-CCGCCAGAGTTCGTT-TAA-CACGCA---AAGGCgggag
gi|16 : GCCAAGGTGTTTTTAACT-TC--
gi|2 : gcagtcgatTTTTTAACT-TC--ACAGGACA-TTTGGTC-GGTAAAT-GTT-AAA-G-TGTTAACCGGAACCGAAC-------AAACATT-TTA-CCGGACCG--AATTGAAAAA--AGAACCTTAATTAGCTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAAATTAAAAAAAAAAAAAA---CAACTTGGAAATAAATTAATTTCAAAACAC-ATATTTATTTCCAAAAATTGGATA-ATTA--------AGTCT-TACC-AGAATGACTACATATCATCCT-CCAA--TTCCGCCAGA----------------------AGGCCTCC--GAC-TGTGC---------AT-T-----TTCATAATTTTTCCCAATAAATGAAATAAAA--AGCA-----TTTACATCATTTTCCGTCCT-CTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCAGC----TTCATTAC--ATT-----------------TAGGACAAGTCATGGTCACATTCTCGGAACTATTTAGTAT
gi|3 : GGTC-GGTAAAT-GTT-AAA-GATGTTA-CCGGAACCGAAC-------AA-CATT-TTA-CCGGACCG--AATTGAAAAAAAG--ACCTTA-TTA-CTGGTATA----A------A----A-A-AAAAATATTCAAATTTTTAAAAA-TTAAAA----AAAAAAAAACAACTTGGAAATAAATTAATTTC-AAACAC-ATATTTATT-C----A-TTGGATA-ATTA---------GTCT-TA-CCAGAA-GACTACATATCATCCTCC-AAACTTCCGCCAGAG-----------------------GCCT-CTGGAC-TGTGC---------AT-T-----TTCATAATTTTTCC--ATAAATGAAAT-AAA--AGCAT----TTAACATCATTTT-CGTCCTCCTGACC-ATCTCAAAATTAATTAAACAAAAAAATTACTAC-TTTCTTCTAATGTCTCTATAGATTGTTCGCGATGCA-TAGGGTGCA-C----TTCATTAC--ATT-----------------TAGGACAAGTCATGGTCA-ATTCTCGGAACTATTTAGTAT
gi|4 : TTCCAAACTTCCGCCAGAGTTCGTT-T-ATCACGCA---GAGGC-T-C--GACGTGTACCCTTACGTGAT-T-----TTCATAATTTT-CC--ATAAATGAA-TTAAAGAAGCAT----TT-ACATCATTTT-CGTC---------------AAAATTA-TGAAACAAAA-AATTACTAC-TTTCTTCTAATGTCTCTATAGATTGT---CGATGCA-TAATGTGCA-CAAGTTTCAATAC--CTTTTTAGA-TGCG-TTACATA----AAGTCATGGTCA-A-TCTCAG-ACCATTTAGTATTgaattta
gi|5 : CCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTGAAAGA-----ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC----------CAAA---C-ATTTAGAAATAACTTAATTTC-AAACAT-A---TTATTTC----ACTTGGATACATTACGTTCATTAGTCT-TA-C-AGAATGA-CA-GTATCATC
gi|6 : aCCAAGGA--TTTTAACT-TC--A-AGGACA-TTTGGTCCGG-AAATCGTTTAGATAATGTTA-C--GA-C-GAAC-------AA-CATT-TTA-CAGGACCG--AATTGAAAGA-----ACCTTA-TTAGCTTGCATATTTCATTGGTTA----ATA-AAA-------AAATATTTAAAAA-CC----------CAAA---C-ATTTAGAAATAACTTAATTTC-AAACAT-A---TTATTTC----ACTTGGATACATTACGTTCATTAGTCT-TA-C-AGAATGA-CA-GTATCATC
gi|7 : aCAAGGTGTTTTTAACTCTC--ACAGGACA-TTTGGTC--GTAA-T-GTT-AGA-GA-GTTA-CCGGA-CCGAAC-------AA-CATT-TTA-C-GGACCG--AATTGAAAGA--G---CCTTA-TTAGCTGGTATA----A------A----ATA-AAAAATATTTAAATTTTTAAAAA-TCAAAAC---AAAAAAT--TAACTTAGAAAT-AATTAATTTC-AAACACAATATTTATTTC----A-TTGGA-----TA-----ATTAGTCTCTA-C-AGAATGACCACATATCAT
gi|8 : GCCAAAGTGTTTTTAACT-TCAAACAGGA-A-TTTGGTCCGGT-AAT-GTT-AGA-GATGTTA-CCGGA-CCGAAC-------AA-CATT-TTA-CCGGA-CG--AATTGAAAGA--G--ACATTA-TTAGCTGGTATA----A------A----ATATAAAAATATTTAAATTTTTAAAAA-ATAAAA----CAAAAA---
gi|9 : agtcgatCCAAAGTGTTTT-AACT-TC--ACAGGACA-TTTGGTCCGGTAA-T-GTT-AGA-GATGTTA-CCGGA-CCGAATTGAAAGAGA-CCTTATTAGCTGGACAGGTAATT-----------ATTTCA-TTAGCTAATTTA----A------AGAATATA-AAAAAAATTT--TTTTTTAGAAA-