lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 44 2 2 222222 88888888888888 11 22 5555 4 11 333 88888888888888 1 777 1 33 1 1 444444444444444 11 888888888888 2 1 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 11 3 22222 1 33333333 2 1 777777777777777777777777777777777777777777777777777777777 2222 22222 44444444444444444444444444444444 3333333333333333 111 2222222 2222 2222 55555555555555555555555555555555555555555
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 22 2 6 0 0 444444 3 88888888888888 2 99 6 77 0000 3 0 88 555 00000000000000 5 000 6 3 6 00 7 3 5 000000000000000 44 4 111111111111 0 8 3 0 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 8 5 3 0 44 88 5 11 5 00000 8 1 33333333 0 0 8 777777777777777777777777777777777777777777777777777777777 2222 1 66 9 777 55 11111 55555555555555555555555555555555 4 4 55 55 4 3333333333333333 8 4 444 3 3 3 2222222 5555 1111 55555555555555555555555555555555555555555 777 77 5 5
lowQualScore : ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .. .. . . . . ...... . .............. . .. . .. .... . . .. ... .............. . ... . . . .. . . . ............... .. . ............ . . . . . ............................................................................................................................ . . . . . .. .. . .. . ..... . . ........ . . . ......................................................... .... . .. . ... .. ..... ................................ . . .. .. . ................ . . ... . . . ....... .... .... ......................................... ... .. . .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 55 5 0 0 0 333333 0 00000000000000 5 55 0 55 0000 0 0 00 000 00000000000000 5 000 0 3 0 00 3 3 7 777777777777777 00 7 333333333333 7 7 3 7 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8 0 0 8 0 00 22 0 88 4 88888 0 8 22222222 4 6 0 333333333333333333333333333333333333333333333333333333333 3333 0 99 8 888 55 00000 11111111111111111111111111111111 0 0 55 55 0 3333333333333333 0 0 888 6 6 6 6666666 1111 3333 44444444444444444444444444444444444444444 000 55 1 7
consensus : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAG-TTACA-TTGATGAATCTAAT-TATTAATGTCA-GTCAAATAAAT-------TGCTGGATGTTACTGATAGTTTAAT-GAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACG--TGAAATCAGAA-ACTGCGGTTTTGGANTAAATNCNTNTAGTCTCGTGTGAANTATCCCGCAACTATATCTCTGCATGGTANCTCTGATCCATGTTTANTTTTAATACGCCAGCTAAAAACGTACANTGTACCAGNAACGTAAAGNTNTTGNTTGTTTTTGNTTAAATTTTAATTANGGGTGGTATGCACGTANGACCCCACTTACTCGCAGACAAAATGATGCTAAAGGNANCCATGATATTGTNAACTTCATGTTTTATAAGGGCCCACTACCTTTAATTTTGGTCATAACGTCNTAGTTTTCACTAACATAGCGNACACAAGATTATATNTTNACTAATCCACCATCTATAATAAAAATGCTCTGCTTCAATTGGAGTGGTCACTCTGCTTTCTCCGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCNCCCTGAACACGGAGAGATANTCTTCAATCGACTTNCCAGCCTCATTGTTGNGCNCTCTAGATTTCAAAGATTTAGAGTTAT-GCCCCGTTCCGGGAAATTAAAAAGACAAC---AAAGNTAGA--GTTATCAGAGCCCNTNTCCGGAAAACTTAAAAAAACACNCGAAAG-GTGAAAANCAGGCTCAATCTAGA-ACAATGAATGCTCACCAACTATCG---GTATCAGATTTC-AGTCTG-ACTAAAGT-CAGAC-CT--TACT------TATCATTTC-GTAANTTAG-GGCAACGATTTTTTAA-TGA-TCGGCGA-CTGTGT-------------TCGCTGAATCAC-TAA-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CCG-TCAAAA------T-----CGAA-GTATG-CGAAAGATTGCACCCGAG-NGCA-GACGATTTACTTGG-ACGTAATATTAATACGG-AACACAGTTCA-TGAATTTGGG-TACATGTAG-GAAGTTA-TA----TACCTTTTACTG-GCN------TGTGGATTCGGAAGTCA-------AC--AAA----GA---T-C--A--GAATGAATGGCGGATT--TATTT---TTC--C---C-AGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T-AAAA-TCG---GCAATGC-CGGCAACC-TTCAAAA--GA------CAGATGC------------GC---CGC-G-GGCCT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( gi|2 ) : ACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGTA-GTGAT--GAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTT--ATAGAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG--TT-------A-CTATTTCTCTACA-GGTA---CTGATCCATGGTTGTTTTT--TA----AATT------GT-CGC----CCAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTAGTATGTATGCAGAAC---ACTT---TG-------AATGAT----AAGAAACCTGCG-CAATGTCAACTTCATGTTTTATAATG--CTAGTAC-TATA--TTTG--CCTG-CATCTTA--TTTCATT--CATAGTTTA---AA----ATATTTTTATT--TCCAT-AT-TGT--------TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGTCTTCA-------TGTCAGCC-CATT-CTGTGCGCT----A-TTTAAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATT-AAAAAAC-AC---AAAGTTA-ATTGTTATC---GCCCGTTTCCGGGAA--TTAAAA---CACACGAAAGCGTGAAAACCAG---CAATCTAGGCACAGT-------CACCAACTATCGCGGGTATTAGATTTC-AGTTTGGACTAAAGT-CATACTCT--TACT------TATCATTTC-GTAATTTAGGGGGAACGG--TTTCAAGTGA-TCGGCGA-CTGTATCAGTGGAACTGTATCGTTGAATCAC-TAA-C-ATT-AAGTCAAAGT-GGGTAATTTAGTCGCACCCCG-TCAAAA------T-----CAAACATATG-CAAAAGATT-CACTTGAG-AACATGACGATTTATTTGG-ACCTAATATTAATACGGTAACACAGGTCAGTGAATTTTGG-TACCTGTAG-GATGTTATTA----TACCTTTTACTG-G-A------TGTGGATTCGGAAGTCA-------AC--AAA----GA---T-C--A--AAATGAATGGCGGATT--TATTT---TTC--C---C-AGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T-AAAA-CGG---GCAATGC-CGGCAACC-TTCAAAA-AGA------CAGATGC------------GC---CGC-G-GGCCT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAG-TTACA-TTGATGAATCTAAT-TATTAATGTCA-GTCAAATAAAT-------TGCTGGATGTTACTGATAGTTTAAT-GAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACG--TGAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTG--ATATCCCGCA-CTA--TCTCTGCATGGTATCTCTGATCCAT-TTTAATTTT--TATT--AGTTAAAAACGT-CACTGTATCAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTA
gi|3 : T---GATT---TACATGTA---TC---TGAATT-------AACTATATTTCTAC--GGTAA--CTGATCCATG-TTATTTTTAATACGCCAACT------ATACAA----CCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATGGT---TACGTATAACCCCACTTACTTACAGACAAAATGATGCTAAAGGAACCCATGATATTGTGAACTTTATGTTT----AGG--CC--TACCTTTA--TTTG--CATA-CGTCTTAA-TTTTACT-----AGTGGAC--AA----ATATTTTT------CCAT-ATCTATA-------TGCTCTGCTTCAATTG---TGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCACCT-GAACAC---------GTC------------GTCAG-C-CAT---TGTGCCCT----ATTTTAAAG--TTAGAGTTAT--TCCCGTTCCGG-AAATTAAAAAAAC-ACCCGAAAGtaactggagtatagactagtacactacatacgggtaccttatttaaacaaaaacacgatgcataggaacttcgagataaaataactattgtcaattcaattttataaaggcctacctttaattttggtcataacgtcgtagttttcttaacatagcttatacaagattatatattgactaattcaccattataataaaaatgctctgtttttagagtggtcctctgttctttggaaattttccgtcataactttcacacacaaatcaacggcttgctctctgtacggagagatattcttcaatcgacttcccagcctcattgttaaacactctagattcaaaaatttagagttatgcctttttccgggaaattaaaagacaacaaaggtagagttatcagagcccttatccggaaaacttaaaaacacgaaaggtgaaaaacaggctcaatgagacatgaataatggttcaccaaaaatagctatagaattcagagtatgtaacactaaaaagctcaacatcatgtatgtacactatgagcaacgatgttagaatccaatgagtagcacctcgacatagtaatcgagctgaaaatatcactagacaattgatgttactaaatcattgggctcgcgaatcgaaaaatgagaatagtagactccaatatgaaagattgcaccgagtccgtgacccaatcatcataaccgtgtggcagaacggatgttaatttgggaccttatataatacggaaaacaaccatatatgttgggtacatgtgtaaagtaaataatctcacctttactgagagctacttatgcatcggaagtcacaagtgattctagtaaatgatgccggattgttattttttttgcagatttgatacaagccgctagtaccaactttttatttattgaaaattcgattaagagagcccgcaatgaggcaactcaaaaaacagatgcagcgcaggcctcgcaagaaccgtaatttcaattttatttggc
gi|1 : ATGCAT--AGGA----ACTT---CG-------A--GAT----AAAATAACT-----ATTGTCAA-TTCA-ATTTTATAAAGGCCTAC--C-TTTAATTTTGGTCATAACGTCGTAGTTTTC-TTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTGTT--CTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATATTCTTCAATCGACTTCCCAGCCTCATTGTTAAACACTCTAGA-TTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATT-AAAAGACAAC---AAAGGTAGA--GTTATCAGAGCCCTTATCCGGAAAACTTAAAA----ACACGAAAG-GTGAAAAACAGGCTCAATatgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|3 : acatgtatattggacatcttagttttgatgactatgattaaaagtaaggtattgaatagataagggtaccttagaaatgatgactaatttaatatcaaaacactaaaatttgtaactttgtttcttgagacagagtaaataataagtgttttgaaaatcgagatctatgataggttcataatccaagttacattgatgaatctaattattaatgtcagtcaaataaattgctggatgttactgatagtttaatgaagtataatgttaataatatacaaactaacgcagatcattttattttcttacgtgaaatcagaaactgcggttttggaataaatccttcagtctcgtgtgatatcccgcactatctctgcatggtatctctgatccattttaatttttattagttaaaaacgtcactgtatcaacaagtaaagatgttgggtttttgtttaaattattacgggtataactggagtatagactagtacactacatacgggtaccttatttaaacaaaaacacg---AAAGTTAGA--GTTATT----CCCGTT-CCGGAAA--TTAAAAAAACACCCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAATGCTCACCA-CTATCG---GTATCAGATTTCCAGTCTG-ACTAAAGTCCAAAC-CTAATACT------TATCATTTTAGTAACTTAGAG---ACGA--TTTTCAATGAGTCGGCGA-CTGT-T-------------TCGCTGAATCAC-TAACC-ATTGGAGTCAATATGGGGTAATT--GTAGCA--CCGTTCAAAATGGCCTT-----CAAAGGTCTGTCGGAAGA--------GAA-AGCA-GACGATTTACTTGG-ACCTAATATTAATACGG-AATACA-GTTATTGAATATGGA-TGCATGTAGTAAAGTTA-TA----TACC--TTACTA-GCC------TGT-GATTCGG-AGTT--------AC--AAA----GATT-T-C--A--AAATGAA--GC-GATT--TATTTTTATTC--C---C-AGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT-AAAA-TCG---GCAATG--CGGCGAC---TCAAA----A------C-GATGC------------G----CGCAG-GGCCT---GAGAACCGTAATTTCAATTgagacatgaataatggttcaccaaaaatagctatagaattcagagtatgtaacactaaaaagctcaacatcatgtatgtacactatgagcaacgatgttagaatccaatgagtagcacctcgacatagtaatcgagctgaaaatatcactagacaattgatgttactaaatcattgggctcgcgaatcgaaaaatgagaatagtagactccaatatgaaagattgcaccgagtccgtgacccaatcatcataaccgtgtggcagaacggatgttaatttgggaccttatataatacggaaaacaaccatatatgttgggtacatgtgtaaagtaaataatctcacctttactgagagctacttatgcatcggaagtcacaagtgattctagtaaatgatgccggattgttattttttttgcagatttgatacaagccgctagtaccaactttttatttattgaaaattcgattaagagagcccgcaatgaggcaactcaaaaaacagatgcagcgcaggcctcgcaagaaccgtaatttcaattttatttggc
gi|6 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttT-------CACCAACTATCG---GTATCAGATTTC-AGTCT-GAC-AAAGT-CAGAC-CT--TACTTTAAAATATCATTTC-GTAAATTA---GCAACAATTTTTCAA-TGG-TCGACAAGCTGTG-------------ATCGCTGAATAACTTAA-CAATTGGAGTC-AATT-GGGTAA-TTAGTGGTA--CCG-GCTAAA------T-----GGTA-ATAAG-TGAAAGATTGCA-TTGAGTGGCA-AACGATTTAattg
gi|4 : cacagtaaatctAGATTTC-AGACTG-ACTTGAGT-CAGAC-CT--TACT------TATCACTTT-ATAATTTAATAGCATCAATTTTTTAA-TGA-TCAGCAA-CTGTATCA--------------CTGAATCAC-TAAGCAATG-GAGTCAATAT-GGGGAA-TTATTGGCA-CCAG-TCAATA------TGGCTCCGAA---ATG--AAAGAATG-CAC-CGAG-TGCA-GACAATTCACTTAG-ATGTAATATTAATACGA-AACACAGTTCA-TGAA-TTTGG------GTAG-GATGTT-CTC----TACC-TTTACTG-GCC------TGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATT-C--A--GAATGAAT-GCGGATT--T-TTT---TTCTTC---C-AGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T-AAAA-TTG---GTGATG--CGGCAACC--TCAAAA-CGA------ac
gi|13 : AAAGATTGCACC-GAA-TGCA-GACGATTTATTTAG-CCGTAATATCAATACGG-A--ACAGTTCA-TTAATTTGGG-TATATGTAG-GAAGTTA-TA----TACC-TTTACTG-G-at
gi|1 : AG-AACG-GATG-TTAATTTGGGACCTTATAT-AATACGG-AAAACAA-CCA-TATATGTTGGGTACATGTGT-AAAGTAAATAATCTCACCTTT-ACTGAG-AGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---T-TCTAGTAAATGA-TGCCGGATTGTTATTT---TTT--TTG-C-AGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGA-GAGCCCGCAATGA--GGCAAC---TCAAAA-A-A------CAGATGC------------AG---CGC-A-GGCCTCGCAAGAACCGTAATTTCAATTTT-ATTTGGCcc
gi|5 : acatgtatattggacatcttagttttgatgactatgattaaaagtaaggtattgaatagataagggtaccttagaaatgatgactaatttaatatcaaaacactaaaatttgtaactttgtttcttgagacagagtaaataataagtgttttgaaaatcgagatctatgataggttcataatccaagttacattgatgaatctaattattaatgtcagtcaaataaattgctggatgttactgatagtttaatgaagtataatgttaataatatacaaactaacgcagatcattttattttcttacgtgaaatcagaaactgcggttttggaataaatccttcagtctcgtgtgatatcccgcactatctctgcatggtatctctgatccattttaatttttattagttaaaaacgtcactgtatcaacaagtaaagatgttgggtttttgtttaaattattacgggtataactggagtatagactagtacactacatacgggtaccttatttaaacaaaaacacgatgcataggaacttcgagataaaataactattgtcaattcaattttataaaggcctacctttaattttggtcataacgtcgtagttttcttaacatagcttatacaagattatatattgactaattcaccattataataaaaatgctctgtttttagagtggtcctctgttctttggaaattttccgtcataactttcacacacaaatcaacggcttgctctctgtacggagagatattcttcaatcgacttcccagcctcattgttaaacactctagattcaaaaatttagagttatgcctttttccgggaaattaaaagacaacaaaggtagagttatcagagcccttatccggaaaacttaaaaacacgaaaggtgaaaaacaggctcaatgagacatgaataatggttcaccaaaaatagctatagaattcagagtatgtaacactaaaaagctcaacatcatgtatgtacactatgagcaacgatgttagaatccaatgagtagcacctcgacatagtaatcgagctgaaaatatcactagacaattgatgttactaaatcattgggctcgcgaatcgaaaaatgagaatagtagactccaatatgaaagattgcaccgagtccgtgacccaatcatcataaccgtgtggcTACTTGG-ACATAATATTAATACGG-AACACAGTTCA-TGAATTTGGG-TACATGTAG-GAAGTTAT-A----TACCTTT-ACTA-G-AC-----TGTG-ATTCGCATGTCA--------T--AAA----GA---TTC--A--GAATGCATG-CAGATT--TATTT---TCC--C---CCAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TAT------TT---T---AC-TGAAACAT--CG-A-T-AAAA-TCA---GCGATGCAC--CAACC-T-CAAAA-TG---------GATGC------------AC----GT-G-GGCCT---GAGAACCGTAATTTCAATTCT-AT
gi|8 : tgTAGATTCAAGAG--A-------ATGTAAA----AT---T-C--A--GAATGAAT-GTGGATT--T-TTT---TTC--CTTTC-AGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T-GAAA-TCG---GCATCAT-C-ACAACG-TCCAA-----A------CACATGC------------GC---AG--G-GGTCT---GAG
gi|10 : ggcctgtgattccaaattttcaa--A--GAGTGAG-GGTGGAAT--TTTTT---TTT--C---A-AGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T-AAAA-TTT---GGATTGA--GGCTACC-T-CAA------------CAGATGT------------GC---AA--A-GGCTT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|12 : aagaaATT--TTTTT---TTC--A---C-TGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T-AAAA-TCA---GCAGTG--TGGCAA-T-TTCAAAACAGA------TATGTGC------------tttaatattataa
gi|7 : --TATTT---TTC--C-----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TA-------TT---T--CATCTGAAG---TTCA-A-T-AAAA-TCA---GCAATGC-T-GCAACC---CAAAA---A------CAAATGC------------A----CGC-T-GGTCT---GAtagcc
gi|11 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccac---TTC--CAAAC-AGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---T---ATATGAAA-ATT--G-A-T-ATA--TGG---CCAAT-T-CGGCA--C-CTCAAAA----------CA----C------------GA---CAT-GTGGCCT---GAGAAC-GTAATTTCAATTTT-ATTTTGC
gi|9 : C--C---C-A--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T-AAAATCGG---TCAATTG-CGGCAACCTTTCAAAC-AGAATTCGGCAAACGCAGCTTAAGACTGAC---TGC-G----CT---GAGAACAGTAATTTCAATTTTGATTTccagtatcatatatt
gi|14 : CA-A-T-AAAA-TCA---GCAATGC-TG-CAACC-C-CAAAA----------CAGATGC------------AC----GC-T-GGTCT---GAGAACCGTAATTTTAATTTT-ATTTGGCtttggcc
gi|15 : ---GCAATGC--AGCAACC-T-CAAAA-TG---------GATGA------------GCGTGCAT-G-GGCAT---GAGAACTGAAATTACAATTCT-ATTTGGCc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 333 2 1 888888888 1 77777777777777777777777777777777777777777 222 2222 2 1 11 22 2 2 1 2 1 2 6666666 1 222 22222 3333333 333333 11 2 22 2 222 222 11 1 1 7777777777777 1 22 1111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111 555 33 33 2 1 999999999999999999999999999999999999999999999999999999999 333333333 2 1 99999999999 33 2 11 5555555555555555555555555 22 11111 4444 11 33 22 11 1111 11 333 1 33 222 1 333 2 1 222222 111 11 2222 11 2222222 111 2222222 2222222 6666666666666666666666666 11 1111 111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 2 22222222 1 444444444444444444444444 222 111 33333333333333333333333333333333 2222222222222222 111 2222 1111 3333333333 333333333333333333333
lowQualScore : 999999 3 555 0 2 3 5 4 000000000 4 5 3 33333333333333333333333333333333333333333 4 111 2 3333 0 4 5 4 88 77 3 0 0 5 4 0 5 2 2 0 5555555 5 111 00000 4 3333333 000000 88 0 2 77 0 2 111 1 111 1 1 66 5 5 5555555555555 6 0 22 8888 6 7 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 6 7 222222 6 000 6 00 00 3 1 2 333333333333333333333333333333333333333333333333333333333 6 0 111111111 3 2 6 11 22222222222 7 6 00 3 1 44 7 0 8888888888888888888888888 22 99999 1 4444 99 00 00 6 6 99 9999 1 6 88 777 1 4 00 999 1 3 88 777 6 0 0 6 888888 3 777 6 8 11 5555 0 8 1 8 11 3333333 555 1 6666666 8 9999999 8 8 8 2222222222222222222222222 11 7777 8 8 8 0 0 3 222 0 88 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 6 6 6 6 6 99 5 1 6 6 6 1 4444 6 6 6 3 22222222 7 1 777777777777777777777777 77 77 000 66 7 777 4 55 777 44444444444444444444444444444444 3 3 55 55 3 5555555555555555 44 3 111 3 3 7777 3 0000 7777 3 2222222222 3 888888888888888888888 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ......................................... . ... . .... . . . . .. .. . . . . . . . . . . ....... . ... ..... . ....... ...... .. . . .. . . ... . ... . . .. . . ............. . . .. .... . . . .......................................................................................................................................................................... . . . ...... . ... . .. .. . . . ......................................................... . . ......... . . . .. ........... . . .. . . .. . . ......................... .. ..... . .... .. .. .. . . .. .... . . .. ... . . .. ... . . .. ... . . . . ...... . ... . . .. .... . . . . .. ....... ... . ....... . ....... . . . ......................... .. .... . . . . . . ... . .. .......................................................................................... .. . . . . . .. . . . . . . .... . . . . ........ . . ........................ .. .. ... .. . ... . .. ... ................................ . . .. .. . ................ .. . ... . . .... . .... .... . .......... . ..................... ... . .
lowQualScore : 555555 0 000 0 5 0 0 0 000000000 0 5 0 55555555555555555555555555555555555555555 0 000 5 5555 0 0 5 0 55 55 0 0 0 5 0 0 5 5 5 0 0000000 5 000 55555 0 0000000 000000 00 0 5 55 0 5 000 0 555 0 0 55 0 0 3333333333333 0 7 77 0000 7 3 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 7 3 333333 7 777 7 77 33 7 0 0 000000000000000000000000000000000000000000000000000000000 7 7 777777777 7 0 7 33 33333333333 3 7 77 3 0 00 3 7 3333333333333333333333333 00 33333 0 0000 33 77 00 7 7 33 1111 0 7 33 333 0 0 33 777 0 3 33 000 7 0 8 5 000000 2 555 5 0 00 0000 8 0 4 0 00 8888888 666 0 8888888 0 4444444 0 0 0 8888888888888888888888888 00 0000 0 0 0 8 8 2 666 6 88 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 77 7 7 7 7 7 22 2 7 7 7 7 0 2222 7 7 7 7 77777777 7 7 000000000000000000000000 99 99 111 11 7 000 0 00 777 00000000000000000000000000000000 6 6 00 00 6 4444444444444444 00 6 000 3 3 1111 1 8888 5555 1 0000000000 3 666666666666666666666 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGA-TTATCCCGCA-CTAT-TCTCTACA-GGTA-CTCTGATCCATGTTTATTTTT-AT----CAGCTAAA----T-CACTGTA--CCAGAAA-GT---GTTGTTG--TGTTTTTGTTT---TTTTAATTACGGGTA--------GTATGTAC--GTANAACC-CA---------CTTACTTG-AGACAAAA---CGATGC-AAAGGAACCT---------ACGA-TATTGTCAACTTCATGTTTTATAAAGGCC---TACCTTTA--TTTG--CATA-CGTCTTAGTTTTC-TT-ACATAGTTTACA-AA-A--ATATTTT-ACT--TCCAC-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-TCTTCA-TCG---T-TCAGCC-CATTGTTG-GCGCT----ATTTCAAAG--TTAGAGTTAT-GCCCCGTTCCGGGAAATTAAAAAGACA-C--AAAGNTAGA--GTTATC---GCCCGT-TCCGGAAA--TTAAAAA--CACACGAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATCG---GTATCAGATTTC-AG--TCTG----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGC-AACGAT-TT----TCCAA-TGA-TCGGCGA-CT-------GTAT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAATT-AGTGGCACC--G----TC--AAAA------T-----CGA----A-ATA--------TG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTAT-AT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTC-AAA-A-A------C-AGATGC------------GC---CGC-GGGCCT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGANTAAATNCNTNTAGTCTCGTGTGAANTATCCCGCAACTATATCTCTGCATGGTANCTCTGATCCATGTTTANTTTTAATACGCCAGCTAAAAACGTACANTGTA--CCAGNAACGTAAAGNTNTTGNTTGTTTTTGNTTAAATTTTAATTANGGGTG--------GTATGCAC--GTANGACCCCA---------CTTACTCGCAGACAAAA---TGATGCTAAAGGNANCC---------ATGA-TATTGTNAACTTCATGTTTTATAAGGGCCCACTACCTTTAATTTTGGTCATAACGTCNTAGTTTTCACTAACATAGCGNACACAAGATTATATNTTNACTAATCCACCATCTATAATAAAAATGCTCTGCTTCAATTGGAGTGGTCACTCTGCTTTCTCCGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCNCCCTGAACACGGAGAGATANTCTTCAATCGACTTNCCAGCCTCATTGTTGNGCNCTCTAGATTTCAAAGATTTAGAGTTAT-GCCCCGTTCCGGGAAATTAAAAAGACAAC--AAAGNTAGA--GTTATCAGAGCCCNTNTCCGGAAAACTTAAAAAAACACNCGAAAG-GTGAAAANCAGGCTCAATCTAGA-ACAATGAAT----GCTCACCAACTATCG---GTATCAGATTTC-AG--TCTG----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-GGC-AACGAT-TT----TTTAA-TGA-TCGGCGA-CT-------GTGT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAATT-AGTGGCACC--G----TC--AAAA------T-----CGA----A-GTA--------TG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACGTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTAT-AT-ACCTTTTACTGG------CNTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTC-AAA-AGA------C-AGATGC------------GC---CGC-GGGCCT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGA--TATCCCGCA-CTAT--CTCTGCATGGTATCTCTGATCCAT-TTTAATTTTTAT----TAGTTAAAAACGT-CACTGTA--TCAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTAC-ACTACATACGGGTACCTTATTT--AAACAAAAACACGATGC-ATAGGAACTTCGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCC---TACCTTTAATTTTGGTCATAACGTCGTAGTTTTC-TTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATATTCTTCAATCGACTTCCCAGCCTCATTGTTAAACACTCTAGATT-CAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC--AAAGGTAGA--GTTATCAGAGCCCTTATCCGGAAAACTTAAAAA----CACGAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATAG---CTAT-AGAATTC-AGAGTATGTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGC-AACGATGTTAGAATCCAA-TGA-GTAGCAC-CTCGACATAGTAA-------------TCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AATC-ATTGGGCTC--GCGAATCGAAAAA------T------GAGAATA-GTAGACTCCAATA-TGAAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAAT-CTCACCTTT-ACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TC-AAA-AAA------C-AGATGC------------AG---CGC-AGGCCTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T----AAAATTTG-GATTGA--GGCTACC-T-C-AA-----------C-AGATGT------------GC---AA--AGGCTT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaa---T-TC--CAAACAGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---TA-TAT--GAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTC-AAA-ACA------CGACATGT------------G----------GCCT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ATT--TTTTT---T-TC--A---CTGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA---A------C-AGATccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTAT-AT-ACC-TTTACTGG------Catgtgctagcc
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC-C-C-AAA-A--------C-AGATGC------------AC----GC-TGGTCT---GAGAACCGTAATTTTAATTTT-ATTTGGCc
gi|15 : G-CAATGC--AGCAACC-T-C-AAA-A--------T-GGATGA------------GCGTGCAT-GGGCAT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGTA-GTGAT--GAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATTA-TTTCATTTTAAATGAATTATTAAATGCTGG-TGTTACT---AGTTATA--GAAGTACTAT-------ATATACA------TGTA--TCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG--TTA--------CTATTTCTCTACA-GGTA---CTGATCCATGGTTGTTTTT-----------TAAA--------TTGTCGCCCAGAAA-GT---GTTGTTG--TGTTTCTTTTT---TTTTAATTACGGGTA--------GTATGTAT--GCAGAAC---A---------CTT---TG-------AA---TGAT----AAGAAACCT---------GCG--CAATGTCAACTTCATGTTTTATAATG--CTAGTAC-TATA--TTTG--CCTG-CATCTTA--TTTCATT--CATAGTTTA---AA----ATATTTTTATT--TCCA-----TATTGT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGTCTTCA-------TGTCAGCC-CATT-CTGTGCGCT----ATTT-AAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATTAAAAA-ACA-C--AAAGTTA-ATTGTTATC---GCCCGTTTCCGGGAA--TTAAAA---CACACGAAAGCGTGAAAACCAG---CAATCTAGGCACAGT-----------CACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG---ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTA-G-GGGGAACGGT-TT----C--AAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-CA-TTA-AGTCAAAGT-GGGTAATTTAGTCGCACCCCG----TC--AAAA------T-----CAA----ACATA--------TG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAA-AGA------C-AGATGC------------GC---CGC-GGGCCT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : AACTATATTTCTAC--GGTAACT--GATCCATGTT-ATTTTTAATACGCCAACTA------TACA----A--CCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---TAC--GTATAACCCCA---------CTTACTTACAGACAAAA---TGATGCTAAAGGAACCC---------ATGA-TATTGTGAACTTTATGTTT-----AGGCC---TACCTTTA--TTTG--CATA-CGTCTTAATTTT-----AC-TAGTGGACA----A--ATATTTT------TCCAT-ATCTATA-------TGCTCTGCTTCAATTG---TGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCACC-TGAACACG----------------TCG-----TCAGC--CATTGT---GCCCT----ATTTTAAAG--TTAGAGTTAT--TCCCGTTCC-GGAAATTAAAAAAACACCCGAAAGAT
gi|3 : tgatttacatgtatctgaatt--AAAGTTAGA--GTTATT----CCCGT-TCCGGAAA--TTAAAAAAACACCCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATCG---GTATCAGATTTCCAG--TCTG----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG---ACGAT-TT----TC-AA-TGAGTCGGCGA-CT-------GT-T-------------TCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAATT--GTAGCACC--GT---TC--AAAATGGCCTT-----CAA----AGGTC--------TGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTAT-AT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA---A------C--GATGC------------G----CGCAGGGCCT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACTG----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGC-ATCAAT-TT----TTTAA-TGA-TCAGCAA-CT-------GTAT--------------CA--CTGAA----TCAC-TA-AGCAAT-GGAGTCAATAT-GGGGAATT-ATTGGCACCA-G----TC--AATA------TGGCTCCGA----A-AT-------------GAAAGAATGCAC-------------------------C-GAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTCT-CT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TC-AAA-Aattg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTAT-AT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TA-------TT---T--TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC--TC-AAA---A------T-GGATGC------------A----CGT-GGGCCT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATCG---GTATCAGATTTC-AG--TCTG----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATTA----GC-AACAAT-TT----TTCAA-TGG-TCGACAAGCT-------GTGA-------------TCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-T-GGGTAATT-AGTGGTACC--G----GC--TAAA------T-----GGT----A-ATA--------AG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TAT------TT---C---ATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---C-AAA-A-A------C-AAATGC------------A----CGC-TGGTCT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAAT-GTGGATT--T-TTT---T-TC--CTTTCAGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC-AA----A------C-ACATGC------------GC---AG--GGGTCT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC-AAACAGAATTCGGC-AAACGCAGCTTAAGACTGAC---TGC-G---CT---GAGAACAGTAATTTCAATTTTGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1 1 333333333 1 33333333 22222 11 33333333 222 2222 1 1 111 11 1 1 1 1 1 1 3333333 1 222 1 11 3333333 333333 11 1 11 1 222 222 1 1 1 5555555555 2222 22 444 1 666666666666666666666666666 1 222 11 222 1111 88888888888888888888888888888888888888888888888888888888888 111 1 777777777777 11 11 11 1 1 1 66666666666666666666666666666666666666666666 222 111 1 1 66666666666 11 1 77777777777777777777777 11 1 3333 222 1 11 22 2 11 22222 11 3333 111 11 11 1 1 222 2 222222222222 111 11 1111 11 2222222 111 2222 1111 5555555555555555555555555 11 1111 11 222222222 00000000000000000000000000000000000000000000000000000000000000000000000000 1111 2222222 1 444444444444444444444444 222 111 33333333333333333333333333333333 2222222222222222 111 2222 222222 333333333333333333333333
lowQualScore : 999999 1 111 5 1 1 5 1 888888888 1 5 1 66666666 77777 88 44444444 1 111 1 3333 5 1 5 999 88 1 5 5 5 1 5 5 1 1 5 3333333 5 111 5 88 1 3333333 000000 88 5 2 88 5 1 111 1 111 1 5 5 5 3333333333 5555 00 333 6 777777777777777777777777777 3 333 88 333 2222 88888888888888888888888888888888888888888888888888888888888 888 2 000000000000 6 7 7 6 88 88 88 3 2 7 3 7 11111111111111111111111111111111111111111111 6 555 444 3 2 6 0 33333333333 7 6 88 3 6 7 7 55555555555555555555555 88 6 3 6666 3 333 2 88 00 3 99 00000 1 6 88 0000 777 88 7 88 5 3 7 333 6 0 555555555555 3 777 6 8 11 8 7777 0 8 1 8 11 3333333 555 1 3333 5 88 7777 8 8 8 7777777777777777777777777 11 7777 8 8 8 5 0 44 88 8 0 11 8 111111111 99999999999999999999999999999999999999999999999999999999999999999999999999 77 6 6 6 6 6 99 1 1 6 6 6 1 4444 6 6 6 6 1111111 7 1 777777777777777777777777 77 77 000 66 7 777 4 55 777 44444444444444444444444444444444 3 3 55 55 3 5555555555555555 44 3 111 3 3 7777 3 0000 555555 44 3 3 3 444444444444444444444444 3 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ........ ..... .. ........ . ... . .... . . . ... .. . . . . . . . . . . ....... . ... . .. . ....... ...... .. . . .. . . ... . ... . . . . .......... .... .. ... . ........................... . ... .. ... .... ........................................................... ... . ............ . . . . .. .. .. . . . . . ............................................ . ... ... . . . . ........... . . .. . . . . ....................... .. . . .... . ... . .. .. . .. ..... . . .. .... ... .. . .. . . . ... . . ............ . ... . . .. . .... . . . . .. ....... ... . .... . .. .... . . . ......................... .. .... . . . . . .. .. . . .. . ......... .......................................................................... .. . . . . . .. . . . . . . .... . . . . ....... . . ........................ .. .. ... .. . ... . .. ... ................................ . . .. .. . ................ .. . ... . . .... . .... ...... .. . . . ........................ . ... . .
lowQualScore : 555555 0 555 5 0 0 0 0 000000000 0 5 0 00000000 00000 00 55555555 0 000 0 5555 5 0 5 555 00 0 5 5 5 0 0 5 0 0 5 5555555 5 000 5 55 0 0000000 000000 00 0 5 55 0 0 000 0 555 0 5 0 0 0000000000 0000 77 777 0 333333333333333333333333333 3 333 33 333 7777 33333333333333333333333333333333333333333333333333333333333 333 3 777777777777 7 3 3 7 33 33 33 3 0 3 3 3 00000000000000000000000000000000000000000000 7 777 777 3 0 7 7 33333333333 3 7 33 3 7 3 3 00000000000000000000000 33 7 3 0000 7 333 0 33 00 3 33 88888 0 7 33 0000 777 33 3 33 3 3 3 333 7 0 555555555555 2 555 5 0 00 0 0000 8 0 4 0 00 8888888 666 0 0000 0 88 0000 2 0 0 0000000000000000000000000 00 0000 0 0 0 6 8 66 66 0 8 00 0 888888888 55555555555555555555555555555555555555555555555555555555555555555555555555 77 7 7 7 7 7 22 0 7 7 7 7 0 2222 7 7 7 7 7777777 7 7 000000000000000000000000 99 99 111 11 7 000 0 00 777 00000000000000000000000000000000 6 6 00 00 6 4444444444444444 00 6 000 3 3 1111 1 8888 444444 22 3 3 6 000000000000000000000000 6 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCATGTT-ATTTTTA-TA-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTATGTAC--GTANA--AC-C-AC-------TTACTTA-A-ACAAAA---CGATGC-AAAGGAACCCGCGA-----------TATTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTA--C-AAA--ATA-T-TT-ACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG---TC--AGCC-CATTGT--G-CGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCC-GGAAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-CGAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTAT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATATGGG-TAA-TTAGTGGCA--CC-G----T-C--AAAAT-----GG-----AA-A--TA-----------TG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA-CTCTGATCCATGTTTATTTTTATCA-GCTAAA----TCACTGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTATGTAC--GTANA--ACCC-AC-------TTACTTG-AGACAAAA---CGATGC-AAAGGAACCTACGA-----------TATTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTA--CAAAA--ATA-T-TTTACT--TCCAC-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG--TTC--AGCC-CATTGTTGG-CGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGGGAAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CACACGAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTAT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATATGGG-TAA-TTAGTGGCA--CC-G----T-C--AAAAT-----CG-----AA-A--TA-----------TG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGAT-ATCCCGCACTA-T--CTCTGCATGGTATCTCTGATCCATTTTAATTTTTATTA-GTTAAAAACGTCACTGTAT---CAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTACACTACAT-ACGGGTACCTTATTTA-A-ACAAAAACACGATGC-ATAGGAACTT-CGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCCTA--CCTTTAATTTTGGTCATAACGTCGTAGTTTTCTTAACATAGCTTATACAAGATTATA-TATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATA-TTCTTCAATCGACTTCCCAGCCTCATTGTTAAACACTCTAGATTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC---AAAGGTAGA--GTTATCAGAGCCCT-TATCCGGAAAACTTAAAAA--CAC--GAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATA---GCTAT-AGAATTC-AGAGTAT-GTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGCAACGATGTTAGAATCCAATGA-GTAGCAC-CTCGACATAGTAA-------------TCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AA-TCATTGGGC--TC-GCGAAT-CGAAAAAT-----GA-----GA-A--TAGTAGACTCCAATA-TGAAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAA-TCTCACC-TTTACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TCAAAA--AACAG-ATGC-AG---CGC-A-G-------------GC-CTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T----AAAATTTG-GATTGA--GGCTACC-TC----A--A-CAG-ATGT-GC---AA--A-G-------------GC-TT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaa---T-TC--CAAACAGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---TA-TAT--GAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTCAAAA----CA-----C-GA---CAT-GTG-------------GC-CT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ATT--TTTTT---T-TC--A---CTGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA--A-CAG-ATccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCatgtgctagcc
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC---CCAAA--A-CAG-ATGC-AC----GC-T-G-------------GT-CT---GAGAACCGTAATTTTAATTTT-ATTTGGC
gi|15 : G-CAATGC--AGCAACC-TC--AAA--A-TGG-ATGA-GCGTGCAT-G-G-------------GC-AT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGT-AGTGA--TGAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTTATA--GAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG-TT-------ACTATT-TCTCTACA-GGTA---CTGATCCATGGTTGTTTTT-------TAAA----TTGTCGC-C---CAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTA--------GTATGTAT--GCAGA--A--C-AC-------T---TTG-------AA---TGAT----AAGAAACCTGCG------------CAATGTCAACTTCATGTTTTATAATG--CTAGTACTATA--TTTG--CCTG-CATCTTA--TTTCATT-CATAGTTT-----AAA--ATATT-TTTATT--TCCAT-AT-T---GT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGT-CTTCA-T-G---TC--AGCC-CATTCTGTG-CGCTAT---TT-AAAG--TTAGAGTTATCGCCCCGTTTC-GGAAATTAAAAA-ACA-C---AAAGTTA-ATTGTTATC---GCCCGTT-TCCGGGAA--TT-AAAA--CACACGAAAGCGTGAAAACCAG---CAATCTAGGCACAG-----------TCACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG----ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTAGG-GGGAACGG--TT----TCAAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-C-ATT-AAGTCAAAGTGGG-TAATTTAGTCGCACCCC-G----T-C--AAAAT-----CA-----AACA--TA-----------TG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAAAGA-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : ACTA-TATTTCTAC--GGTA-A-CTGATCCATGTT-ATTTTTAATACGCCAA--------CTATACAACCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---TAC--GTATA--ACCCCAC-------TTACTTACAGACAAAA---TGATGCTAAAGGAACCCATGA-----------TATTGTGAACTTTATGTTT-----AGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAATT---TTA-C-TAGTGGA--C--AA--ATA-T-TT---T--TCCAT-ATCTATA-------TGCTCTGCTTCAATT---GTGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCA-CCTGAACACG-----------------TCG---TC--AG-C-CATTGT--G-CCCTAT---TTTAAAG--TTAGAGTTAT--TCCCGTTCC-GGAAATTAAAAAAACA-CCCGAAAGAT
gi|3 : tgatttacatgtatctgaatta---AAAGTTAGA--GTTATT----CCCG-T-TCCGGAAA--TTAAAAAAACACCCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATC---GGTATCAGATTTCCAG--TCT-G----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG--ACGAT-TT----TC-AATGAGTCGGCGA-CT-------GT-T-------------TCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAA-TT-GTAGCA--CC-G----TTC--AAAAT-----GGCCTTCAA-AGGTC-----------TGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTA-TAT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA--A-C-G-ATGC-G----CGCAG-G-------------GC-CT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACT-G----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGCATCAAT-TT----TTTAATGA-TCAGCAA-CT-------GTAT--------------CA--CTGAA----TCAC-TA-AGCAAT-GGAGTCAATATGGG-GAA-TTATTGGCA--CCAG----T-C--AATATGGCTCCG-----AA-A--T----------------GAAAGAATGCAC-------------------------C-GAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTC-TCT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TCAAAA--attg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TA-------TT---T--TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC-TC--AAA--A-TGG-ATGC-A----CGT-G-G-------------GC-CT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATT----AGCAACAAT-TT----TTCAATGG-TCGACAAGCT-------GTGA-------------TCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-TGGG-TAA-TTAGTGGTA--CC-G----G-C--TAAAT-----GG-----TA-A--TA-----------AG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TAT------TT---C---ATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---CAAAA--A-CAA-ATGC-A----CGC-T-G-------------GT-CT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAAT-GTGGATT--T-TTT---T-TC--CTTTCAGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC--AA--A-CAC-ATGC-GC---AG--G-G-------------GT-CT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC--AA--A-CAGAATTCGGCAAACGC-A-GCTTAAGACTGACTGCGCT---GAGAACAGTAATTTCAATTTTGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1 1 333333333 1 33333333 22222 11 33333333 222 2222 1 1 111 11 1 1 1 1 1 1 3333333 1 222 1 11 3333333 333333 11 1 11 1 222 222 1 1 1 5555555555 2222 22 333 1 1 8888888888888888888888888888 1 222 11 222 1111 99999999999999999999999999999999999999999999999999 2222 111 1 555555555 11 11 11 1 1 1 3333333333333333333333 1 555555555555 222 111 1 1 66666666666 11 1 6666666666666666666666666 1 11 222 222 1 11 22 1 11 22222 11 3333 111 11 11 333 1 222 2 222222222222 111 11 1111 11 2222222 111 2222 1111 5555555555555555555555555 11 1111 11 222222222 0000000000000000000000000000000000000000000000000000000000000000000 1111 2222222 1 444444444444444444444444 222 111 33333333333333333333333333333333 2222222222222222 111 2222 222222 333333333333333333333333
lowQualScore : 999999 1 111 5 1 1 5 1 888888888 1 5 1 66666666 77777 88 44444444 1 111 1 3333 5 1 5 999 88 1 5 5 5 1 5 5 1 1 5 3333333 5 111 5 88 1 3333333 000000 88 5 2 88 5 1 111 1 111 1 5 5 5 3333333333 5555 00 666 3 3 0000000000000000000000000000 3 333 88 333 2222 22222222222222222222222222222222222222222222222222 4444 888 3 3 7 333333333 6 7 7 6 88 88 88 3 2 7 3 7 6666666666666666666666 3 444444444444 6 555 444 3 2 6 0 33333333333 7 6 88 3 6 7 7 6666666666666666666666666 6 3 88 333 3 333 2 88 00 3 99 00000 1 6 88 0000 777 88 7 88 333 3 7 333 6 0 555555555555 3 777 6 8 11 8 7777 0 8 1 8 11 3333333 555 1 3333 5 88 7777 8 8 8 7777777777777777777777777 11 7777 8 8 8 5 0 44 88 8 0 11 8 111111111 8888888888888888888888888888888888888888888888888888888888888888888 77 6 6 6 6 6 99 1 1 6 6 6 1 4444 6 6 6 6 1111111 7 1 777777777777777777777777 77 77 000 66 7 777 4 55 777 44444444444444444444444444444444 3 3 55 55 3 5555555555555555 44 3 111 3 3 7777 3 0000 555555 44 3 3 3 444444444444444444444444 3 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ........ ..... .. ........ . ... . .... . . . ... .. . . . . . . . . . . ....... . ... . .. . ....... ...... .. . . .. . . ... . ... . . . . .......... .... .. ... . . ............................ . ... .. ... .... .................................................. .... ... . . . ......... . . . . .. .. .. . . . . . ...................... . ............ . ... ... . . . . ........... . . .. . . . . ......................... . . .. ... . ... . .. .. . .. ..... . . .. .... ... .. . .. ... . . ... . . ............ . ... . . .. . .... . . . . .. ....... ... . .... . .. .... . . . ......................... .. .... . . . . . .. .. . . .. . ......... ................................................................... .. . . . . . .. . . . . . . .... . . . . ....... . . ........................ .. .. ... .. . ... . .. ... ................................ . . .. .. . ................ .. . ... . . .... . .... ...... .. . . . ........................ . ... . .
lowQualScore : 555555 0 555 5 0 0 0 0 000000000 0 5 0 00000000 00000 00 55555555 0 000 0 5555 5 0 5 555 00 0 5 5 5 0 0 5 0 0 5 5555555 5 000 5 55 0 0000000 000000 00 0 5 55 0 0 000 0 555 0 5 0 0 0000000000 0000 77 777 3 3 7777777777777777777777777777 3 333 33 333 7777 33333333333333333333333333333333333333333333333333 0000 333 3 7 3 333333333 7 3 3 7 33 33 33 3 0 3 3 3 0000000000000000000000 3 000000000000 7 777 777 3 0 7 7 33333333333 3 7 33 3 7 3 3 3333333333333333333333333 7 3 33 333 7 333 0 33 00 3 33 88888 0 7 33 0000 777 33 3 33 333 3 3 333 7 0 555555555555 2 555 5 0 00 0 0000 8 0 4 0 00 8888888 666 0 0000 0 88 0000 2 0 0 0000000000000000000000000 00 0000 0 0 0 6 8 66 66 0 8 00 0 888888888 1111111111111111111111111111111111111111111111111111111111111111111 77 7 7 7 7 7 22 0 7 7 7 7 0 2222 7 7 7 7 7777777 7 7 000000000000000000000000 99 99 111 11 7 000 0 00 777 00000000000000000000000000000000 6 6 00 00 6 4444444444444444 00 6 000 3 3 1111 1 8888 444444 22 3 3 6 000000000000000000000000 6 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTA--CAANAT-----ATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTAT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATATGGG-TAA-TTAGTGGCA--CC-G----T-C--AAAATGGC----AA-A--TA-----------TG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--AACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTA--CAAAAT-----ATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTAT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATATGGG-TAA-TTAGTGGCA--CC-G----T-C--AAAATGG-----AA-A--TA-----------TG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGAT-ATCCCGCACTA-T--CTCTGCATGGTATCTCTGATCCAT-TTTAATTTTTA-TTA-GTTAAAAACGTCACTGTAT---CAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTACACTACATACGGGT--ACCTTATTTA--AACAAAAACACGATGC-ATAGGAACTTCGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCCTA--CCTTTAATTTTGGTCATAACGTCGTAGTTTTCTTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATA-TTCTTCAATCGACTTCCCAGCCTCAT--TGTTAAACACTCTAGATTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC---AAAGGTAGA--GTTATCAGAGCCCT-TATCCGGAAAACTTAAAAA--CAC---GAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATA---GCTAT-AGAATTC-AGAGTAT-GTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGCAACGATGTTAGAATCCAATGA-GTAGCAC-CTCGACATAGTAA-------------TCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AA-TCATTGGGC--TC-GCGAAT-CGAAAAATGA-----GA-A--TAGTAGACTCCAATA-TGAAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAA-TCTCACC-TTTACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TCAAAA--AACAG-ATGC-AG---CGC-A-G-------------GC-CTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T----AAAATTTG-GATTGA--GGCTACC-TC----A--A-CAG-ATGT-GC---AA--A-G-------------GC-TT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaa---T-TC--CAAACAGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---TA-TAT--GAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTCAAAA----CA-----C-GA---CAT-GTG-------------GC-CT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ATT--TTTTT---T-TC--A---CTGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA--A-CAG-ATccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCatgtgctagcc
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC---CCAAA--A-CAG-ATGC-AC----GC-T-G-------------GT-CT---GAGAACCGTAATTTTAATTTT-ATTTGGC
gi|15 : G-CAATGC--AGCAACC-TC--AAA--A-TGG-ATGA-GCGTGCAT-G-G-------------GC-AT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGT-AGTGA--TGAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTTATA--GAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG-TT-------ACTATT-TCTCTACA-GGTA---CTGATCCATGGTTG-TTTTT--------TAAA----TTGTCGC-C---CAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTA--------GTAT------GTATG-CAGA-A----C--AC-TT--T--------GAA---TGAT----AAGAAACC-TGCG-CA---------ATGTCAACTTCATGTTTTATAATG--CTAGTACTATA--TTTG--CCTG-CATCTTA--TTTCATT-CATAGTTTA--AAATAT-----TTTTATT--TCCAT-AT-T---GT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGT-CTTCA-T-G-----TCAGCC-CATTCTGT---GCGCTAT---TT-AAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATTAAAAA-ACA-C---AAAGTTA-ATTGTTATC---GCCCGTT-TCCGGGAA--TT-AAAA--CACAC-GAAAGCGTGAAAACCAG---CAATCTAGGCACAG-----------TCACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG----ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTAGG-GGGAACGG--TT----TCAAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-C-ATT-AAGTCAAAGTGGG-TAATTTAGTCGCACCCC-G----T-C--AAAATCA-----AACA--TA-----------TG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAAAGA-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : ACTA-TATTTCTAC--GGTAA--CTGATCCAT-GTTA-TTTTTAAT-ACGCCAA--------CTATACAACCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---------TACG-TATA-AC---CCCAC-TTACTTACAGACAAAA---TGATGCTAAAGGAACC-CATGATA---------TTGTGAACTTTATGTTT-----AGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAATT---TTA-C-TAGTGGA--C-AAAT-----ATTT--T--TCCAT-ATCTATA-------TGCTCTGCTTCAATT---GTGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCA-CCTGAACACG-----------------TCG-----TCAG-C-CAT--TGT---GCCCTAT---TTTAAAG--TTAGAGTTAT--TCCCGTTCCGG-AAATTAAAAAAACA-CCCGAAAGAT
gi|3 : tgatttacatgtatctgaatta---AAAGTTAGA--GTTATT----CCCG-T-TCCGGAAA--TTAAAAAAACAC-CCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATC---GGTATCAGATTTCCAG--TCT-G----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG--ACGAT-TT----TC-AATGAGTCGGCGA-CT-------GT-T-------------TCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAA-TT-GTAGCA--CC-G----TTC--AAAATGGCCTTCAA-AGGTC-----------TGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTA-TAT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA--A-C-G-ATGC-G----CGCAG-G-------------GC-CT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACT-G----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGCATCAAT-TT----TTTAATGA-TCAGCAA-CT-------GTAT--------------CA--CTGAA----TCAC-TA-AGCAAT-GGAGTCAATATGGG-GAA-TTATTGGCA--CCAG----T-C--AATATGGCTCCGAA-A--T----------------GAAAGAATGCAC-------------------------C-GAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTC-TCT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TCAAAA--attg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TA-------TT---T--TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC-TC--AAA--A-TGG-ATGC-A----CGT-G-G-------------GC-CT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATT----AGCAACAAT-TT----TTCAATGG-TCGACAAGCT-------GTGA-------------TCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-TGGG-TAA-TTAGTGGTA--CC-G----G-C--TAAATGG-----TA-A--TA-----------AG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TAT------TT---C---ATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---CAAAA--A-CAA-ATGC-A----CGC-T-G-------------GT-CT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAAT-GTGGATT--T-TTT---T-TC--CTTTCAGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC--AA--A-CAC-ATGC-GC---AG--G-G-------------GT-CT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC--AA--A-CAGAATTCGGCAAACGC-A-GCTTAAGACTGACTGCGCT---GAGAACAGTAATTTCAATTTTGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1 1 333333333 1 33333333 22222 11 33333333 222 2222 1 1 111 11 1 1 1 1 1 1 3333333 1 222 1 11 3333333 333333 11 1 11 1 222 222 1 1 1 5555555555 2222 22 333 1 1 8888888888888888888888888888 1 222 11 222 1111 9999999999999999999999999999999999999999 2222 2222 111 1 555555555 11 11 11 1 1 1 444444444 22222 1 555555555555 222 111 1 1 66666666666 11 1 6666666666666666666666666 1 11 222 222 1 11 22 1 11 22222 11 3333 111 11 11 333 1 222 2 222222222222 111 11 1111 11 2222222 111 2222 1111 666666666666666666666666 11 1111 111 11 2222 11 11111111111111111111111111111111111111111111111111111111111111111111111111 1111 2222222 1 444444444444444444444444 222 111 33333333333333333333333333333333 2222222222222222 111 2222 222222 333333333333333333333333
lowQualScore : 999999 1 111 5 1 1 5 1 888888888 1 5 1 66666666 77777 88 44444444 1 111 1 3333 5 1 5 999 88 1 5 5 5 1 5 5 1 1 5 3333333 5 111 5 88 1 3333333 000000 88 5 2 88 5 1 111 1 111 1 5 5 5 3333333333 5555 00 666 3 3 0000000000000000000000000000 3 333 88 333 2222 6666666666666666666666666666666666666666 1111 4444 888 3 3 7 333333333 6 7 7 6 88 88 88 3 2 7 3 7 3 888888888 00000 3 444444444444 6 555 444 3 2 6 0 33333333333 7 6 88 3 6 7 7 6666666666666666666666666 6 3 88 333 3 333 2 88 00 3 99 00000 1 6 88 0000 777 88 7 88 333 3 7 333 6 0 555555555555 3 777 6 8 11 8 7777 0 8 1 8 11 3333333 555 1 3333 5 88 7777 8 8 8 666666666666666666666666 11 7777 8 8 8 5 0 222 0 8 0 11 8 5555 11 44444444444444444444444444444444444444444444444444444444444444444444444444 77 6 6 6 6 6 99 1 1 6 6 6 1 4444 6 6 6 6 1111111 7 1 777777777777777777777777 77 77 000 66 7 777 4 55 777 44444444444444444444444444444444 3 3 55 55 3 5555555555555555 44 3 111 3 3 7777 3 0000 555555 44 3 3 3 444444444444444444444444 3 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ........ ..... .. ........ . ... . .... . . . ... .. . . . . . . . . . . ....... . ... . .. . ....... ...... .. . . .. . . ... . ... . . . . .......... .... .. ... . . ............................ . ... .. ... .... ........................................ .... .... ... . . . ......... . . . . .. .. .. . . . . . . ......... ..... . ............ . ... ... . . . . ........... . . .. . . . . ......................... . . .. ... . ... . .. .. . .. ..... . . .. .... ... .. . .. ... . . ... . . ............ . ... . . .. . .... . . . . .. ....... ... . .... . .. .... . . . ........................ .. .... . . . . . ... . . . .. . .... .. .......................................................................... .. . . . . . .. . . . . . . .... . . . . ....... . . ........................ .. .. ... .. . ... . .. ... ................................ . . .. .. . ................ .. . ... . . .... . .... ...... .. . . . ........................ . ... . .
lowQualScore : 555555 0 555 5 0 0 0 0 000000000 0 5 0 00000000 00000 00 55555555 0 000 0 5555 5 0 5 555 00 0 5 5 5 0 0 5 0 0 5 5555555 5 000 5 55 0 0000000 000000 00 0 5 55 0 0 000 0 555 0 5 0 0 0000000000 0000 77 777 3 3 7777777777777777777777777777 3 333 33 333 7777 0000000000000000000000000000000000000000 0000 0000 333 3 7 3 333333333 7 3 3 7 33 33 33 3 0 3 3 3 7 333333333 33333 3 000000000000 7 777 777 3 0 7 7 33333333333 3 7 33 3 7 3 3 3333333333333333333333333 7 3 33 333 7 333 0 33 00 3 33 88888 0 7 33 0000 777 33 3 33 333 3 3 333 7 0 555555555555 2 555 5 0 00 0 0000 8 0 4 0 00 8888888 666 0 0000 0 88 0000 2 0 0 000000000000000000000000 00 0000 0 0 0 6 8 666 6 0 8 00 0 0000 00 77777777777777777777777777777777777777777777777777777777777777777777777777 77 7 7 7 7 7 22 0 7 7 7 7 0 2222 7 7 7 7 7777777 7 7 000000000000000000000000 99 99 111 11 7 000 0 00 777 00000000000000000000000000000000 6 6 00 00 6 4444444444444444 00 6 000 3 3 1111 1 8888 444444 22 3 3 6 000000000000000000000000 6 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTAN-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTACA-------ANATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTAT-------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGAT-ATCCCGCACTA-T--CTCTGCATGGTATCTCTGATCCAT-TTTAATTTTTA-TTA-GTTAAAAACGTCACTGTAT---CAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTACACTACATACGGGT--ACCTTATTTA--AACAAAAACACGATGC-ATAGGAACTTCGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCCTA--CCTTTAATTTTGGTCATAACGTCGTAGTTTTCTTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATA-TTCTTCAATCGACTTCCCAGCCTCAT--TGTTAAACACTCTAGATTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC---AAAGGTAGA--GTTATCAGAGCCCT-TATCCGGAAAACTTAAAAA--CAC---GAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATA---GCTAT-AGAATTC-AGAGTAT-GTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGCAACGATGTTAGAATCCAATGA-GTAGCAC-CTCGACATAGTAA-------------TCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AA-TCATTGGGC--TC-GCGAATCGAAAAATGAGAATAG----T----AGACTCCA--A--TATG---AAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAA-TCTCACC-TTTACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TCAAAA--AACAG-ATGC-AG---CGC-A-G-------------GC-CTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T----AAAATTTG-GATTGA--GGCTACC-TC----A--A-CAG-ATGT-GC---AA--A-G-------------GC-TT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaa---T-TC--CAAACAGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---TA-TAT--GAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTCAAAA----CA-----C-GA---CAT-GTG-------------GC-CT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ATT--TTTTT---T-TC--A---CTGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA--A-CAG-ATccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCatgtgctagcc
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC---CCAAA--A-CAG-ATGC-AC----GC-T-G-------------GT-CT---GAGAACCGTAATTTTAATTTT-ATTTGGC
gi|15 : G-CAATGC--AGCAACC-TC--AAA--A-TGG-ATGA-GCGTGCAT-G-G-------------GC-AT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGT-AGTGA--TGAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTTATA--GAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG-TT-------ACTATT-TCTCTACA-GGTA---CTGATCCATGGTTG-TTTTT--------TAAA----TTGTCGC-C---CAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTA--------GTAT------GTATG-CAGA-AC-----------ACTTT--G----AA---TGAT----AAGAAACC-TGCG-CA---------ATGTCAACTTCATGTTTTATAATG--CTAGTACTATA--TTTG--CCTG-CATCTTA--TTTCATT-CATAGTTTAAA-------ATATTTTTATT--TCCAT-AT-T---GT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGT-CTTCA-T-G-----TCAGCC-CATTCTGT---GCGCTAT---TT-AAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATTAAAAA-ACA-C---AAAGTTA-ATTGTTATC---GCCCGTT-TCCGGGAA--TT-AAAA--CACAC-GAAAGCGTGAAAACCAG---CAATCTAGGCACAG-----------TCACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG----ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTAGG-GGGAACGG--TT----TCAAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-C-ATT-AAGTCAAAGT-GGGTAATTTAGTCGCACCCC-G----TC--AAAAT------------C----A------AACA--TATG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAAAGA-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : ACTA-TATTTCTAC--GGTAA--CTGATCCAT-GTTA-TTTTTAAT-ACGCCAA--------CTATACAACCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---------TACG-TATA-AC---CCCAC-TTACTTACAGACAAAA---TGATGCTAAAGGAACC-CATGATA---------TTGTGAACTTTATGTTT-----AGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAATT---TTA-C-TAGTGGACA-------A-ATATTT--T--TCCAT-ATCTATA-------TGCTCTGCTTCAATT---GTGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCA-CCTGAACACG-----------------TCG-----TCAG-C-CAT--TGT---GCCCTAT---TTTAAAG--TTAGAGTTAT--TCCCGTTCCGG-AAATTAAAAAAACA-CCCGAAAGAT
gi|3 : tgatttacatgtatctgaatta---AAAGTTAGA--GTTATT----CCCG-T-TCCGGAAA--TTAAAAAAACAC-CCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATC---GGTATCAGATTTCCAG--TCT-G----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG--ACGAT-TT----TC-AATGAGTCGGCGA-CT-------GT-T-------------TCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAA-TT-GTAGCA--CC-GT---TC--AAAATG------GCCTTC----A------A--AGGTCTGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTA-TAT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA--A-C-G-ATGC-G----CGCAG-G-------------GC-CT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACT-G----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGCATCAAT-TT----TTTAATGA-TCAGCAA-CT-------GTA--------------TCA--CTGAA----TCAC-TA-AGCAA-TGGAGTCAATAT-GGGGAA-TTATTGGCA--CCAG----TC--AATATG------G----CTCCGA------A--A--T-----GAAAGAATGCA--------------------------CCGAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTC-TCT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TCAAAA--attg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TA-------TT---T--TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC-TC--AAA--A-TGG-ATGC-A----CGT-G-G-------------GC-CT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATT----AGCAACAAT-TT----TTCAATGG-TCGACAAGCT-------GTGA-------------TCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-T-GGGTAA-TTAGTGGTA--CC-G----GC--TAAATG------G----T-----------A--A--TAAG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TAT------TT---C---ATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---CAAAA--A-CAA-ATGC-A----CGC-T-G-------------GT-CT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAAT-GTGGATT--T-TTT---T-TC--CTTTCAGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC--AA--A-CAC-ATGC-GC---AG--G-G-------------GT-CT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC--AA--A-CAGAATTCGGCAAACGC-A-GCTTAAGACTGACTGCGCT---GAGAACAGTAATTTCAATTTTGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1 1 333333333 1 33333333 22222 11 33333333 222 2222 1 1 111 11 1 1 1 1 1 1 3333333 1 222 1 11 3333333 333333 11 1 11 1 222 222 1 1 1 5555555555 2222 22 333 1 1 8888888888888888888888888888 1 222 11 222 1111 9999999999999999999999999999999999999999 2222 2222 111 1 555555555 11 11 11 1 1 1 4444444 22222 1 555555555555 222 111 1 1 66666666666 11 1 6666666666666666666666666 1 11 222 222 1 11 22 1 11 22222 11 3333 111 11 11 333 1 222 2 222222222222 111 11 1111 11 2222222 111 2222 1111 666666666666666666666666 11 1111 111 11 2222 11 11111111111111111111111111111111111111111111111111111111111111111111111111 1111 2222222 1 444444444444444444444444 222 111 33333333333333333333333333333333 2222222222222222 111 2222 222222 333333333333333333333333
lowQualScore : 999999 1 111 5 1 1 5 1 888888888 1 5 1 66666666 77777 88 44444444 1 111 1 3333 5 1 5 999 88 1 5 5 5 1 5 5 1 1 5 3333333 5 111 5 88 1 3333333 000000 88 5 2 88 5 1 111 1 111 1 5 5 5 3333333333 5555 00 666 3 3 0000000000000000000000000000 3 333 88 333 2222 6666666666666666666666666666666666666666 1111 4444 888 3 3 7 333333333 6 7 7 6 88 88 88 3 2 7 3 7 1 3333333 7 00000 3 444444444444 6 555 444 3 2 6 0 33333333333 7 6 88 3 6 7 7 6666666666666666666666666 6 3 88 333 3 333 2 88 00 3 99 00000 1 6 88 0000 777 88 7 88 333 3 7 333 6 0 555555555555 3 777 6 8 11 8 7777 0 8 1 8 11 3333333 555 1 3333 5 88 7777 8 8 8 333333333333333333333333 11 7777 8 8 8 5 0 222 0 8 0 11 8 5555 11 44444444444444444444444444444444444444444444444444444444444444444444444444 77 6 6 6 6 6 99 1 1 6 6 6 1 4444 6 6 6 6 1111111 7 1 777777777777777777777777 77 77 000 66 7 777 4 55 777 44444444444444444444444444444444 3 3 55 55 3 5555555555555555 44 3 111 3 3 7777 3 0000 555555 44 3 3 3 444444444444444444444444 3 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ........ ..... .. ........ . ... . .... . . . ... .. . . . . . . . . . . ....... . ... . .. . ....... ...... .. . . .. . . ... . ... . . . . .......... .... .. ... . . ............................ . ... .. ... .... ........................................ .... .... ... . . . ......... . . . . .. .. .. . . . . . . ....... . ..... . ............ . ... ... . . . . ........... . . .. . . . . ......................... . . .. ... . ... . .. .. . .. ..... . . .. .... ... .. . .. ... . . ... . . ............ . ... . . .. . .... . . . . .. ....... ... . .... . .. .... . . . ........................ .. .... . . . . . ... . . . .. . .... .. .......................................................................... .. . . . . . .. . . . . . . .... . . . . ....... . . ........................ .. .. ... .. . ... . .. ... ................................ . . .. .. . ................ .. . ... . . .... . .... ...... .. . . . ........................ . ... . .
lowQualScore : 555555 0 555 5 0 0 0 0 000000000 0 5 0 00000000 00000 00 55555555 0 000 0 5555 5 0 5 555 00 0 5 5 5 0 0 5 0 0 5 5555555 5 000 5 55 0 0000000 000000 00 0 5 55 0 0 000 0 555 0 5 0 0 0000000000 0000 77 777 3 3 7777777777777777777777777777 3 333 33 333 7777 0000000000000000000000000000000000000000 0000 0000 333 3 7 3 333333333 7 3 3 7 33 33 33 3 0 3 3 3 0 3333333 3 33333 3 000000000000 7 777 777 3 0 7 7 33333333333 3 7 33 3 7 3 3 3333333333333333333333333 7 3 33 333 7 333 0 33 00 3 33 88888 0 7 33 0000 777 33 3 33 333 3 3 333 7 0 555555555555 2 555 5 0 00 0 0000 8 0 4 0 00 8888888 666 0 0000 0 88 0000 2 0 0 666666666666666666666666 00 0000 0 0 0 6 8 666 6 0 8 00 0 0000 00 77777777777777777777777777777777777777777777777777777777777777777777777777 77 7 7 7 7 7 22 0 7 7 7 7 0 2222 7 7 7 7 7777777 7 7 000000000000000000000000 99 99 111 11 7 000 0 00 777 00000000000000000000000000000000 6 6 00 00 6 4444444444444444 00 6 000 3 3 1111 1 8888 444444 22 3 3 6 000000000000000000000000 6 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTA-------------ATCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTA-------------NTCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGAT-ATCCCGCACTA-T--CTCTGCATGGTATCTCTGATCCAT-TTTAATTTTTA-TTA-GTTAAAAACGTCACTGTAT---CAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTACACTACATACGGGT--ACCTTATTTA--AACAAAAACACGATGC-ATAGGAACTTCGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCCTA--CCTTTAATTTTGGTCATAACGTCGTAGTTTTCTTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATA-TTCTTCAATCGACTTCCCAGCCTCAT--TGTTAAACACTCTAGATTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC---AAAGGTAGA--GTTATCAGAGCCCT-TATCCGGAAAACTTAAAAA--CAC---GAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATA---GCTAT-AGAATTC-AGAGTAT-GTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGCAACGATGTTAGAATCCAATGA-GTAGCAC-CTCGACATAGTA-------------ATCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AA-TCATTGGGC--TC-GCGAATCGAAAAATGAGAATAG----T----AGACTCCA--A--TATG---AAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAA-TCTCACC-TTTACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TCAAAA--AACAG-ATGC-AG---CGC-A-G-------------GC-CTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T----AAAATTTG-GATTGA--GGCTACC-TC----A--A-CAG-ATGT-GC---AA--A-G-------------GC-TT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaa---T-TC--CAAACAGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---TA-TAT--GAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTCAAAA----CA-----C-GA---CAT-GTG-------------GC-CT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ATT--TTTTT---T-TC--A---CTGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA--A-CAG-ATccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCatgtgctagcc
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC---CCAAA--A-CAG-ATGC-AC----GC-T-G-------------GT-CT---GAGAACCGTAATTTTAATTTT-ATTTGGC
gi|15 : G-CAATGC--AGCAACC-TC--AAA--A-TGG-ATGA-GCGTGCAT-G-G-------------GC-AT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGT-AGTGA--TGAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTTATA--GAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG-TT-------ACTATT-TCTCTACA-GGTA---CTGATCCATGGTTG-TTTTT--------TAAA----TTGTCGC-C---CAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTA--------GTAT------GTATG-CAGA-AC-----------ACTTT--G----AA---TGAT----AAGAAACC-TGCG-CA---------ATGTCAACTTCATGTTTTATAATG--CTAGTACTATA--TTTG--CCTG-CATCTTA--TTTCATT-CATAGTTTAAA-------ATATTTTTATT--TCCAT-AT-T---GT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGT-CTTCA-T-G-----TCAGCC-CATTCTGT---GCGCTAT---TT-AAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATTAAAAA-ACA-C---AAAGTTA-ATTGTTATC---GCCCGTT-TCCGGGAA--TT-AAAA--CACAC-GAAAGCGTGAAAACCAG---CAATCTAGGCACAG-----------TCACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG----ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTAGG-GGGAACGG--TT----TCAAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-C-ATT-AAGTCAAAGT-GGGTAATTTAGTCGCACCCC-G----TC--AAAAT------------C----A------AACA--TATG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAAAGA-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : ACTA-TATTTCTAC--GGTAA--CTGATCCAT-GTTA-TTTTTAAT-ACGCCAA--------CTATACAACCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---------TACG-TATA-AC---CCCAC-TTACTTACAGACAAAA---TGATGCTAAAGGAACC-CATGATA---------TTGTGAACTTTATGTTT-----AGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAATT---TTA-C-TAGTGGACA-------A-ATATTT--T--TCCAT-ATCTATA-------TGCTCTGCTTCAATT---GTGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCA-CCTGAACACG-----------------TCG-----TCAG-C-CAT--TGT---GCCCTAT---TTTAAAG--TTAGAGTTAT--TCCCGTTCCGG-AAATTAAAAAAACA-CCCGAAAGAT
gi|3 : tgatttacatgtatctgaatta---AAAGTTAGA--GTTATT----CCCG-T-TCCGGAAA--TTAAAAAAACAC-CCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATC---GGTATCAGATTTCCAG--TCT-G----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG--ACGAT-TT----TC-AATGAGTCGGCGA-CT-------GT--------------TTCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAA-TT-GTAGCA--CC-GT---TC--AAAATG------GCCTTC----A------A--AGGTCTGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTA-TAT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA--A-C-G-ATGC-G----CGCAG-G-------------GC-CT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACT-G----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGCATCAAT-TT----TTTAATGA-TCAGCAA-CT-------GTA--------------TCA--CTGAA----TCAC-TA-AGCAA-TGGAGTCAATAT-GGGGAA-TTATTGGCA--CCAG----TC--AATATG------G----CTCCGA------A--A--T-----GAAAGAATGCA--------------------------CCGAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTC-TCT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TCAAAA--attg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TA-------TT---T--TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC-TC--AAA--A-TGG-ATGC-A----CGT-G-G-------------GC-CT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATT----AGCAACAAT-TT----TTCAATGG-TCGACAAGCT-------GTG-------------ATCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-T-GGGTAA-TTAGTGGTA--CC-G----GC--TAAATG------G----T-----------A--A--TAAG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TAT------TT---C---ATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---CAAAA--A-CAA-ATGC-A----CGC-T-G-------------GT-CT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAAT-GTGGATT--T-TTT---T-TC--CTTTCAGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC--AA--A-CAC-ATGC-GC---AG--G-G-------------GT-CT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC--AA--A-CAGAATTCGGCAAACGC-A-GCTTAAGACTGACTGCGCT---GAGAACAGTAATTTCAATTTTGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1 1 333333333 1 33333333 22222 11 33333333 222 2222 1 1 111 11 1 1 1 1 1 1 3333333 1 222 1 11 3333333 333333 11 1 11 1 222 222 1 1 1 5555555555 2222 22 333 1 1 8888888888888888888888888888 1 222 11 222 1111 9999999999999999999999999999999999999999 2222 2222 111 1 555555555 11 11 11 1 1 1 4444444 22222 1 555555555555 222 111 1 1 66666666666 11 1 6666666666666666666666666 1 11 222 222 1 11 22 1 11 22222 11 3333 111 11 11 333 1 222 2 222222222222 111 11 1111 11 2222222 111 2222 1111 666666666666666666666666 11 1111 111 11 2222 11 11111111111111111111111111111111111111111111111111111111111111111111111111 1111 2222222 1 444444444444444444444444 222 111 33333333333333333333333333333333 2222222222222222 111 2222 222222 333333333333333333333333
lowQualScore : 999999 1 111 5 1 1 5 1 888888888 1 5 1 66666666 77777 88 44444444 1 111 1 3333 5 1 5 999 88 1 5 5 5 1 5 5 1 1 5 3333333 5 111 5 88 1 3333333 000000 88 5 2 88 5 1 111 1 111 1 5 5 5 3333333333 5555 00 666 3 3 0000000000000000000000000000 3 333 88 333 2222 6666666666666666666666666666666666666666 1111 4444 888 3 3 7 333333333 6 7 7 6 88 88 88 3 2 7 3 7 1 3333333 7 00000 3 444444444444 6 555 444 3 2 6 0 33333333333 7 6 88 3 6 7 7 6666666666666666666666666 6 3 88 333 3 333 2 88 00 3 99 00000 1 6 88 0000 777 88 7 88 333 3 7 333 6 0 555555555555 3 777 6 8 11 8 7777 0 8 1 8 11 3333333 555 1 3333 5 88 7777 8 8 8 000000000000000000000000 11 7777 8 8 8 5 0 222 0 8 0 11 8 5555 11 44444444444444444444444444444444444444444444444444444444444444444444444444 77 6 6 6 6 6 99 1 1 6 6 6 1 4444 6 6 6 6 1111111 7 1 777777777777777777777777 77 77 000 66 7 777 4 55 777 44444444444444444444444444444444 3 3 55 55 3 5555555555555555 44 3 111 3 3 7777 3 0000 555555 44 3 3 3 444444444444444444444444 3 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ........ ..... .. ........ . ... . .... . . . ... .. . . . . . . . . . . ....... . ... . .. . ....... ...... .. . . .. . . ... . ... . . . . .......... .... .. ... . . ............................ . ... .. ... .... ........................................ .... .... ... . . . ......... . . . . .. .. .. . . . . . . ....... . ..... . ............ . ... ... . . . . ........... . . .. . . . . ......................... . . .. ... . ... . .. .. . .. ..... . . .. .... ... .. . .. ... . . ... . . ............ . ... . . .. . .... . . . . .. ....... ... . .... . .. .... . . . ........................ .. .... . . . . . ... . . . .. . .... .. .......................................................................... .. . . . . . .. . . . . . . .... . . . . ....... . . ........................ .. .. ... .. . ... . .. ... ................................ . . .. .. . ................ .. . ... . . .... . .... ...... .. . . . ........................ . ... . .
lowQualScore : 555555 0 555 5 0 0 0 0 000000000 0 5 0 00000000 00000 00 55555555 0 000 0 5555 5 0 5 555 00 0 5 5 5 0 0 5 0 0 5 5555555 5 000 5 55 0 0000000 000000 00 0 5 55 0 0 000 0 555 0 5 0 0 0000000000 0000 77 777 3 3 7777777777777777777777777777 3 333 33 333 7777 0000000000000000000000000000000000000000 0000 0000 333 3 7 3 333333333 7 3 3 7 33 33 33 3 0 3 3 3 0 3333333 3 33333 3 000000000000 7 777 777 3 0 7 7 33333333333 3 7 33 3 7 3 3 3333333333333333333333333 7 3 33 333 7 333 0 33 00 3 33 88888 0 7 33 0000 777 33 3 33 333 3 3 333 7 0 555555555555 2 555 5 0 00 0 0000 8 0 4 0 00 8888888 666 0 0000 0 88 0000 2 0 0 888888888888888888888888 00 0000 0 0 0 6 8 666 6 0 8 00 0 0000 00 77777777777777777777777777777777777777777777777777777777777777777777777777 77 7 7 7 7 7 22 0 7 7 7 7 0 2222 7 7 7 7 7777777 7 7 000000000000000000000000 99 99 111 11 7 000 0 00 777 00000000000000000000000000000000 6 6 00 00 6 4444444444444444 00 6 000 3 3 1111 1 8888 444444 22 3 3 6 000000000000000000000000 6 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTA-------------ATCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTA-------------ATCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGAT-ATCCCGCACTA-T--CTCTGCATGGTATCTCTGATCCAT-TTTAATTTTTA-TTA-GTTAAAAACGTCACTGTAT---CAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTACACTACATACGGGT--ACCTTATTTA--AACAAAAACACGATGC-ATAGGAACTTCGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCCTA--CCTTTAATTTTGGTCATAACGTCGTAGTTTTCTTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATA-TTCTTCAATCGACTTCCCAGCCTCAT--TGTTAAACACTCTAGATTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC---AAAGGTAGA--GTTATCAGAGCCCT-TATCCGGAAAACTTAAAAA--CAC---GAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATA---GCTAT-AGAATTC-AGAGTAT-GTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGCAACGATGTTAGAATCCAATGA-GTAGCAC-CTCGACATAGTA-------------ATCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AA-TCATTGGGC--TC-GCGAATCGAAAAATGAGAATAG----T----AGACTCCA--A--TATG---AAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAA-TCTCACC-TTTACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGATA--C-A----A-G----CCG-------CTA-GTACC--AAC--TTTT-TAT------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TCAAAA--AACAG-ATGC-AG---CGC-A-G-------------GC-CTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT------------T--G-GTTTCC-A-------C-A-TTACC--AAG--TTTT-CAT------TT---T---AT-CAAAA-ATA-CG-A-T----AAAATTTG-GATTGA--GGCTACC-TC----A--A-CAG-ATGT-GC---AA--A-G-------------GC-TT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaa---T-TC--CAAACAGAT-----G--T-G-G--A-G----C-ATTTATTTC-A-CTACC--CAC--TTCTCTAC------TT---TA-TAT--GAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTCAAAA----CA-----C-GA---CAT-GTG-------------GC-CT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ATT--TTTTT---T-TC--A---CTGAT-----A--C-T-T--AAG----C-A-------C-A-CTACC--AAC--TTGG-TA-------TT---T--TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA--A-CAG-ATccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCatgtgctagcc
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC---CCAAA--A-CAG-ATGC-AC----GC-T-G-------------GT-CT---GAGAACCGTAATTTTAATTTT-ATTTGGC
gi|15 : G-CAATGC--AGCAACC-TC--AAA--A-TGG-ATGA-GCGTGCAT-G-G-------------GC-AT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGT-AGTGA--TGAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTTATA--GAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG-TT-------ACTATT-TCTCTACA-GGTA---CTGATCCATGGTTG-TTTTT--------TAAA----TTGTCGC-C---CAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTA--------GTAT------GTATG-CAGA-AC-----------ACTTT--G----AA---TGAT----AAGAAACC-TGCG-CA---------ATGTCAACTTCATGTTTTATAATG--CTAGTACTATA--TTTG--CCTG-CATCTTA--TTTCATT-CATAGTTTAAA-------ATATTTTTATT--TCCAT-AT-T---GT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGT-CTTCA-T-G-----TCAGCC-CATTCTGT---GCGCTAT---TT-AAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATTAAAAA-ACA-C---AAAGTTA-ATTGTTATC---GCCCGTT-TCCGGGAA--TT-AAAA--CACAC-GAAAGCGTGAAAACCAG---CAATCTAGGCACAG-----------TCACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG----ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTAGG-GGGAACGG--TT----TCAAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-C-ATT-AAGTCAAAGT-GGGTAATTTAGTCGCACCCC-G----TC--AAAAT------------C----A------AACA--TATG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAAAGA-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : ACTA-TATTTCTAC--GGTAA--CTGATCCAT-GTTA-TTTTTAAT-ACGCCAA--------CTATACAACCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---------TACG-TATA-AC---CCCAC-TTACTTACAGACAAAA---TGATGCTAAAGGAACC-CATGATA---------TTGTGAACTTTATGTTT-----AGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAATT---TTA-C-TAGTGGACA-------A-ATATTT--T--TCCAT-ATCTATA-------TGCTCTGCTTCAATT---GTGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCA-CCTGAACACG-----------------TCG-----TCAG-C-CAT--TGT---GCCCTAT---TTTAAAG--TTAGAGTTAT--TCCCGTTCCGG-AAATTAAAAAAACA-CCCGAAAGAT
gi|3 : tgatttacatgtatctgaatta---AAAGTTAGA--GTTATT----CCCG-T-TCCGGAAA--TTAAAAAAACAC-CCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATC---GGTATCAGATTTCCAG--TCT-G----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG--ACGAT-TT----TC-AATGAGTCGGCGA-CT-------GTT--------------TCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAA-TT-GTAGCA--CC-GT---TC--AAAATG------GCCTTC----A------A--AGGTCTGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTA-TAT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC----A--C-G-TA-A-G----C-G-------C-A-TTACC--AAC--TTTT-TA------------T--TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA--A-C-G-ATGC-G----CGCAG-G-------------GC-CT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACT-G----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGCATCAAT-TT----TTTAATGA-TCAGCAA-CT-------GT--------------ATCA--CTGAA----TCAC-TA-AGCAA-TGGAGTCAATAT-GGGGAA-TTATTGGCA--CCAG----TC--AATATG------G----CTCCGA------A--A--T-----GAAAGAATGCA--------------------------CCGAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTC-TCT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC-----A--T-G-CA-A-G----C-C-------C-ATTTACC--AAC--TTTT-TA-------TT---T--TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TCAAAA--attg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT-----ATTC-A----A-G----T-G-------C-A-TTTCA--AAC--TTTT-TA-------TT---T--TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC-TC--AAA--A-TGG-ATGC-A----CGT-G-G-------------GC-CT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATT----AGCAACAAT-TT----TTCAATGG-TCGACAAGCT-------GTG-------------ATCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-T-GGGTAA-TTAGTGGTA--CC-G----GC--TAAATG------G----T-----------A--A--TAAG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT-----A--C-G-TT-A-G----C-A-------C-A-TAACC--AAC--TTTT-TAT------TT---C---ATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---CAAAA--A-CAA-ATGC-A----CGC-T-G-------------GT-CT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAAT-GTGGATT--T-TTT---T-TC--CTTTCAGAT-----A--CAG-TAAA-G----C-A-------C-A-TTACT--AGC--TTTA-TA-------TT---T--TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC--AA--A-CAC-ATGC-GC---AG--G-G-------------GT-CT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA--------A--C-GAT--A-G----C-G-------C-A-TTACCCAAACCTTTTT-TATAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC--AA--A-CAGAATTCGGCAAACGC-A-GCTTAAGACTGACTGCGCT---GAGAACAGTAATTTCAATTTTGATTT
blockSeqs : . G ATA A T C . T CCAAACTAT A . G TAGTTTTT AACTA GA GAGTGTTG A . A . T T . A AG C T T . A C . T T T ATTAAAT . . A . T . . . C G TT G G . T . A T . . TT TTT A A G . AATACGCCAACTATACAAC C . TT . TTAA GTTACGTATAACCCCAC CAGA T GCT . C A . C T T G GT . . . A T . A A . T ATT . CTATA C CAA AAG A T C . A C . . C T A GAGAGTAGTCTTCATG C . TC . G . T . CG . AA CCCG T G TT G TT . A AA AC C A . C C ATGAATGC A GCG T C . G . C T T AA TTTAAAA TA T AGG G T . A G G GTATCAGTGGAACTGTA . . T . G C ATG T CC A T . CAAACATATGCAAAAGATTCACTT TG . T . . . . G C T G . G . T T . T C G A ACATAAATGCAAAATGGGAAAT . . ATG . T TTA C TT AAA GTGGAGCATTTATTT . T CA CT C TAATGAGTTAACTAGT CT C TTT G T . T TCG CCTCA AG . A G CAAACGCAGCTTAAGACTGACT G . T G
blockSeqs : TAT . . . . TAAATTGTCGCC . . . . TTA GTATGTATGCAGAAC G T . . T . . C T . . . . . . . . . . C . . T . TGT . A . . C . . . . . . . . A TCG . . . . C . . . . . A C A . . . T . . . CC . . . C . GTAAATCT A . C . . . . . A . . T C C AAT C T . T . . GTGA . . . . . A GT . . . . . GCCTTCAAAGGTCTGTCGGAAGA T . . . . . . C T . . . G . . . . . C A A AATGTAAAAT . . GG . T . . . TTT ACAGTAAAGCA . . . . . CTTTAT C . TTT . . . . CTG CTTCA . . . . CGTGCATGG . . C .
blockSeqs : T . G . . C . . . . . G . . T T T AG C T . C . . GTT . . . . . A AT . . . . . GCTCCGAAATGAAAGAATGCACC A . . . . . . C T . . . A . . . . . C . A ACAAAGATT . . AT . A . . . . CACGTAAGCG . . . . . TTTTT C . AGT . . . . CCG CTTTC . . . . ACATGTG . . T .
blockSeqs : . . . . . G . . T C A . . . . . . . GTA . . . . . . T . . . . . GTAATAAGTGAAAGATTGCATT A . . . . . . G T . . . G . . . . . A . G AACAAAGA . . AT . A . . . . TGGTTTCCA . . . . . TTTT T . TTT . . . . CAC TTTC . . . . CCGCGG . . C .
blockSeqs : T . . . . . . A T . . . . . . . . . . . . ATAAAGAT . . AT . A . . . . ACTTAAGCA . . . . . TTTT T . TA . . . . GCG CTCA . . . . CGCAGG . . C .
blockSeqs : . . A . A . . . . ATGCAAGCC . . . . . TTTT T . TT . . . . AG GTCC . . . . CAAAG . . C .
blockSeqs : . . . . . . ATTCAAGTG . . . . . TTTT T . TT . . . . TG CTC . . . . CGCTG . . A .
blockSeqs : . . . . . . ACGTTAGCA . . . . . TTTC T . TT . . . . CA CCC . . . . CGTGG . . .
blockSeqs : . . . . ACGATAGCG . . . . . TTTT G . TT . . . . CG CTC . . . . CGCTG . .
blockSeqs : . . ACGTAGCG . . . . . TT . . T . . . . CG CTC . . . . CAGGG . .
blockSeqs : . . . . CT CCA . . .
blockSeqs : . TC TC .
blockSeqCons : ** **** T****** C** T* **** GTGA******************** ** **** GT* **** ** ** **** C****** ** ** ** *** ACGTNAGCG*********************** TTTT************ **** CGCGG******************* ***
originalCons : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTA-------------ATCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT-----A--C-G-T--A-G----C-G-------C-A-TTACC--AAC--TTTT-TAT------TT---T--TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GC---CGC-G-G-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
finalCons : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTTC--GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CTGTGA--------------------TCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATGT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGGC------CTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGATACGTNAGCG-----------------------C-A-TTACC--AAC--TTTT-TATTTT------------AT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-CAG-ATGC-GCGCGG-------------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1 1 333333333 1 33333333 22222 11 33333333 222 2222 1 1 111 11 1 1 1 1 1 1 3333333 1 222 1 11 3333333 333333 11 1 11 1 222 222 1 1 1 5555555555 2222 22 333 1 1 8888888888888888888888888888 1 222 11 222 1111 9999999999999999999999999999999999999999 2222 2222 111 1 555555555 11 11 11 1 1 1 4444444 22222 1 555555555555 222 111 1 1 66666666666 11 1 6666666666666666666666666 1 11 222 222 1 11 22 1 11 22222 11 3333 111 11 11 333 1 222 2 222222222222 111 11 1111 11 2222222 111 2222 1111 666666666666666666666666 11 1111 111 11 2222 11 11111111111111111111111111111111111111111111111111111111111111111111111111 1111 2222222 1 444444444444444444444444 1111 111 111 11111111 111111 1 2222 222222 2222222222222222222222222
lowQualScore : 999999 1 111 5 1 1 5 1 888888888 1 5 1 66666666 77777 88 44444444 1 111 1 3333 5 1 5 999 88 1 5 5 5 1 5 5 1 1 5 3333333 5 111 5 88 1 3333333 000000 88 5 2 88 5 1 111 1 111 1 5 5 5 3333333333 5555 00 666 3 3 0000000000000000000000000000 3 333 88 333 2222 6666666666666666666666666666666666666666 1111 4444 888 3 3 7 333333333 6 7 7 6 88 88 88 3 2 7 3 7 1 3333333 7 00000 3 444444444444 6 555 444 3 2 6 0 33333333333 7 6 88 3 6 7 7 6666666666666666666666666 6 3 88 333 3 333 2 88 00 3 99 00000 1 6 88 0000 777 88 7 88 333 3 7 333 6 0 555555555555 3 777 6 8 11 8 7777 0 8 1 8 11 3333333 555 1 3333 5 88 7777 8 8 8 333333333333333333333333 11 7777 8 8 8 5 0 888 0 8 0 11 8 5555 11 44444444444444444444444444444444444444444444444444444444444444444444444444 77 6 6 6 6 6 99 1 1 6 6 6 1 4444 6 6 6 6 1111111 7 1 777777777777777777777777 77 77 3333 66 7 777 4 55 222 111 4 4 4 4 3 3 55 55 3 00000000 000000 7 3 3 2 3 3 7777 3 0000 555555 77 3 3 3 44 3 2222222222222222222222222 3 666 1 5
lowQualScore : ...... . ... . . . . . ......... . . . ........ ..... .. ........ . ... . .... . . . ... .. . . . . . . . . . . ....... . ... . .. . ....... ...... .. . . .. . . ... . ... . . . . .......... .... .. ... . . ............................ . ... .. ... .... ........................................ .... .... ... . . . ......... . . . . .. .. .. . . . . . . ....... . ..... . ............ . ... ... . . . . ........... . . .. . . . . ......................... . . .. ... . ... . .. .. . .. ..... . . .. .... ... .. . .. ... . . ... . . ............ . ... . . .. . .... . . . . .. ....... ... . .... . .. .... . . . ........................ .. .... . . . . . ... . . . .. . .... .. .......................................................................... .. . . . . . .. . . . . . . .... . . . . ....... . . ........................ .. .. .... .. . ... . .. ... ... . . . . . . .. .. . ........ ...... . . . . . . .... . .... ...... .. . . . .. . ......................... . ... . .
lowQualScore : 555555 0 555 5 0 0 0 0 000000000 0 5 0 00000000 00000 00 55555555 0 000 0 5555 5 0 5 555 00 0 5 5 5 0 0 5 0 0 5 5555555 5 000 5 55 0 0000000 000000 00 0 5 55 0 0 000 0 555 0 5 0 0 0000000000 0000 77 777 3 3 7777777777777777777777777777 3 333 33 333 7777 0000000000000000000000000000000000000000 0000 0000 333 3 7 3 333333333 7 3 3 7 33 33 33 3 0 3 3 3 0 3333333 3 33333 3 000000000000 7 777 777 3 0 7 7 33333333333 3 7 33 3 7 3 3 3333333333333333333333333 7 3 33 333 7 333 0 33 00 3 33 88888 0 7 33 0000 777 33 3 33 333 3 3 333 7 0 555555555555 2 555 5 0 00 0 0000 8 0 4 0 00 8888888 666 0 0000 0 88 0000 2 0 0 222222222222222222222222 00 0000 0 0 0 6 8 444 6 0 8 00 0 0000 00 77777777777777777777777777777777777777777777777777777777777777777777777777 77 7 7 7 7 7 22 0 7 7 7 7 0 2222 7 7 7 7 7777777 7 7 000000000000000000000000 99 99 7777 11 7 888 4 55 555 000 0 9 0 0 6 6 00 00 6 99999999 555555 3 6 4 3 3 3 1111 1 8888 444444 33 3 3 3 66 3 8888888888888888888888888 3 444 9 0
consensus : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTA-------------ATCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATAT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT---AC-GTAA-GC-GC-A-TTACC--AAC--TTTT-TA-T------TT------TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-C-AG-ATG--C-G-----CGC--GG-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
Reference ( family-7316 ) : ACATGTATATTGGACATCTTAGNTTCATAGATGAACTATNATTANAAGTAAGGTATTGANTAGACAACCAAACTATGGGTACCTNAGAAATGANGGCTGTAGTTTTTATTTAAAACTATATCAAGAAACACTGAGTGTTGAAGATTNGTAACTTTGTTTNTTGAGACAGTAGTAGNTGGTAAGTGNTTTGAGAATCGGAGGATCTNTGACAGGTTCATAATCCAAGTTTACATTTGATGAATCNAATCTATTAATNTCANTCTAAATGAATTATTAAATGCTGGATGTTACTGATAGTTATAATGAAGTACNATGTTAATAATATACAAACTAACGCAGATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGNGGTTTTGGANTAAATNCTTCTAGTCTCGTGTGATTATCCCGCACTA-T-TCTCTACA-GGTA---CTGATCCAT-GTTA-TTTTTA-T-A-GCTAAA----TCGCCGTAC---CAGAAA-GT---GTTGTTGT--GTTTTTGTTT---TTTTAATTACGGGTA--------GTAT------GTACG-TANA-AC---C--AC-TTACTTA--GACAAAA---CGATGC-AAAGGAACC-CGCGATA---------TTGTCAACTTCATGTTTTATAAAGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAGTTTTCTTA-CATAGTTTANA-------ATATATTTACT--TCCAT-AT-TATAGT-----TGCTCTGTTT--ATTAGGGTGGTC-CTCTGCTTTCTCCGAAAAT-----------ACTTTCACACACAA--CAACGG-TTGCACCCTGAATACGGAGAG-TA-T-CTTCA-TCG-----TCAGCC-CAT--TGT---GCGCTAT---TTCAAAG--TTAGAGTTAT-GCCCCGTTCCGG-AAATTAAAAAGACA-C---AAAGNTAGA--GTTATC---GCCCG-T-TCCGGAAA--TTAAAAA--CAC-C-GAAAG-GTGAAAACCAG---CAATCTAGA-ACAGTGAAT----GTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----ACTAAAGTC-AGAC-CT--TACT------TATCATTT-C-GTAANTTA-G-AGCAACGAT-TT----TCCAATGA-TCGGCGA-CT-------GTG-------------ATCG--CTGAA----TCAC-TA-A-CAATTGGAGTCAATGT-GGGTAA-TTAGTGGCA--CC-G----TC--AAAATG------G----C----A------A--A--TATG-CGAAAGATTGCAC-------------------------CCGAG-NG-CA-GA-CG-AT-TTACTT--GGACNTAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CCTGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AG--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT---AC-GTNA-GC-GC-A-TTACC--AAC--TTTT-TA-T------TT------TAT-TGAAA-ATTTCG-A-T----AAAATCGG-CAATGC-CGGCAACC-TTCAAAA--A-C-AG-ATG--C-G-----CGC--GG-------------GC-CT---GAGAACCGTAATTTCAATTTT-ATTTGGC
gi|1 : ACATGTATATTGGACATCTTAGTTTT---GATGA-CTATGATTAAAAGTAAGGTATTGAATAGATAA---------GGGTACCTTAGAAATGATGACTA--------ATTTAA-----TATCAA--AACACT--------AAAATTTGTAACTTTGTTTCTTGAGACAG-AGTAAATAATAAGTGTTTTGAAAATCGA--GATCTATGATAGGTTCATAATCCAAGTT-ACATT-GATGAATCTAAT-TATTAATGTCAGTC-AAATAAATT-------GCTGGATGTTACTGATAGTT-TAATGAAGTATAATGTTAATAATATACAAACTAACGCAGATCAT-TTTATTTTCTTACGT--GAAATCAGAA-ACTGCGGTTTTGGAATAAATCCTTC-AGTCTCGTGTGAT-ATCCCGCACTA-T--CTCTGCATGGTATCTCTGATCCAT-TTTAATTTTTA-TTA-GTTAAAAACGTCACTGTAT---CAACAA-GTAAAGATGTTGG--GTTTTTGTTTAAATT---ATTACGGGTATAACTGGAGTATAGACTAGTACACTACATACGGGT--ACCTTATTTA--AACAAAAACACGATGC-ATAGGAACTTCGAGATAAAATAACTATTGTCAA-TTCA-ATTTTATAAAGGCCTA--CCTTTAATTTTGGTCATAACGTCGTAGTTTTCTTAACATAGCTTATACAAGATTATATATTGACTAATTCACCAT-TATAATAAAAATGCTCTGTTT---TTAGAGTGGTC-CTCTG--TTCTTTGGAAATTTTCCGTCATAACTTTCACACACAAATCAACGGCTTGCTCTCTG--TACGGAGAGATA-TTCTTCAATCGACTTCCCAGCCTCAT--TGTTAAACACTCTAGATTCAAAAATTTAGAGTTAT-GCCTTTTTCCGGGAAATTAAAA-GACAAC---AAAGGTAGA--GTTATCAGAGCCCT-TATCCGGAAAACTTAAAAA--CAC---GAAAG-GTGAAAAACAGGCTCAAT---GAGACA-TGAATAATGGTTCACCAAAAATA---GCTAT-AGAATTC-AGAGTAT-GTAACACTAAA----AAGC-TC--AAC--------ATCATGTAT-GTACACTATG-AGCAACGATGTTAGAATCCAATGA-GTAGCAC-CTCGACATAGTA-------------ATCGAGCTGAAAATATCAC-TAGA-CAATTGATGTTACTA------AA-TCATTGGGC--TC-GCGAATCGAAAAATGAGAATAG----T----AGACTCCA--A--TATG---AAAGATTGCACCGAGTCCGTGACCCAATCATCATAACCGTG-TGGCA-GAACGGATGTTAATTTGGGACCTTATAT-AATACGG-AAAACAAC-CA-TATATGTTGGGTACATGTGTAAAG-TAAATAA-TCTCACC-TTTACTGAGAGCTACTTATGCAT-CGGAAGTCA--------C--AAGT---GA---TTCTAGTAAATGA-TGCCGGATTGTTATTT---T-TT--TTG-CAGATTTGAT-ACAA-GCCGCTA-GTACC--AAC--TTTT-TA-T------TT-------AT-TGAAA-ATT-CG-A-TTAAGAGAGCCCG-CAATGA--GGCAAC---TCAAAA--AAC-AG-ATG--CAG-----CGC--AG-------------GC-CTCGCAAGAACCGTAATTTCAATTTT-ATTTGGC
gi|10 : --AG--AGTGAG-GGTGGAAT--TTTTT---T-TT--C---AAGAT---TG-GTTT-CC-AC-A-TTACC--AAG--TTTT-CA-T------TT------TAT-CAAAA-A-TACG-A-T----AAAATTTG-GATTG--AGGCTACC-TC----A--A-C-AG-ATG--T-G-----CAA--AG-------------GC-TT---GAGAACTATAATGCCAATTTT-TTTCAGC
gi|11 : aagaaC-A-CTACC--CAC--TTCTCTA-C------TT------TATATGAAA-ATT--G-A-T----ATA-TGGC-CAAT-T-CGGCA--C-CTCAAAAC-A-CGAC-ATG--T-G-------------------------GC-CT---GAGAAC-GTAATTTCAATTTT-ATTTTGCtttaatattataa
gi|12 : ttccaaacagatgtggagcatttatttATT--TTTTT---T-TC--A---CTGAT---AC-TTAA-GC-AC-A-CTACC--AAC--TTGG-TA-T------TT------TGT-CGAAA-A-TTCA-G-T----AAAATCAG-CAGTG--TGGCAA-T-TTC-AAA--A-C-AG-ATA--T-G-----TGC--TA-------------GC-Cccagtatcatatatt
gi|13 : AAAGATTGCAC-------------------------C-GAA-TG-CA-GA-CG-AT-TTATTT--AGCCGTAATATCAATACGG-AACA--GTTCA-TTAAT-TTGGGTATATGT----AG-GAAGTTA-TAT-ACC-TTTACTGG------CC
gi|14 : CA-A-T----AAAATCAG-CAATGC-TG-CAACC---CCAAA--A-C-AG-ATG--C-A-----CGC--TG-------------GT-CT---GAGAACCGTAATTTTAATTTT-ATTTGGC
gi|15 : G-CAATGC--AGCAACC-TC--AAA--A-T-GG-ATGAGC-G-----TGCATGG-------------GC-AT---GAGAACTGAAATTACAATTCT-ATTTGGCc
gi|2 : tACATGTATATTGA------TAGGTTCATAGATGAATTATTATTACAAATAAAGTATT-ATTAAACAACCAAACTATAGGTACCTAAGAAA-AAGGGTTGTAGTTTTTATTTAAAACTATATTAAGAAACATTGAGTGTTGAAGATTAATAA---TATTTAT----ACAGTAGTAGTTGGT-AGTGA--TGAGAATCGGAGGATCTCTGACAGATTCATAATCCAAATTTACATTTGA-GAATCAAATCTATT-ATTTCATTTTAAATGAATTATTAAATGCTGG-TGTTAC---TAGTTATA--GAAGTACTAT-------ATATAC------ATGT--ATCATCTTTATTTCGTTACGTTTGAAATCAGAAGACTGGGATT---GATT---TACTTCTAGT-TCGT-TG-TT-------ACTATT-TCTCTACA-GGTA---CTGATCCATGGTTG-TTTTT--------TAAA----TTGTCGC-C---CAGAAA-GT---GTTGTTGT--GTTTCTTTTT---TTTTAATTACGGGTA--------GTAT------GTATG-CAGA-AC-----------ACTTT--G----AA---TGAT----AAGAAACC-TGCG-CA---------ATGTCAACTTCATGTTTTATAATG--CTAGTACTATA--TTTG--CCTG-CATCTTA--TTTCATT-CATAGTTTAAA-------ATATTTTTATT--TCCAT-AT-T---GT-----TGCT-TGTTT--ATTAAGATGGTC-CTCTGTTTTCTCCAAAAAT-----------ACTTTC-CACACAA--CAAGTG-TTGCACCC-GAATACGGAGAG-TAGT-CTTCA-T-G-----TCAGCC-CATTCTGT---GCGCTAT---TT-AAAG--TTAGAGTTATCGCCCCGTTTCGG-AAATTAAAAA-ACA-C---AAAGTTA-ATTGTTATC---GCCCGTT-TCCGGGAA--TT-AAAA--CACAC-GAAAGCGTGAAAACCAG---CAATCTAGGCACAG-----------TCACCAACTATCGCGGGTATTAGATTTC-AG--TTTGG----ACTAAAGTC-ATACTCT--TACT------TATCATTT-C-GTAATTTAGG-GGGAACGG--TT----TCAAGTGA-TCGGCGA-CT-------GTATCAGTGGAACTGTATCG--TTGAA----TCAC-TA-A-C-ATT-AAGTCAAAGT-GGGTAATTTAGTCGCACCCC-G----TC--AAAAT------------C----A------AACA--TATG-CAAAAGATT-CAC-------------------------TTGAG-AA-CATGA-CG-AT-TTATTT--GGACCTAATATTAATACGGTAACACAGGTCAGTGAAT-TTTGGTACCTGT----AG-GATGTTATTAT-ACCTTTTACTGG-------ATGTGGATTCGGAAGTCA-------AC--AAA----GA---TC--AA--AATGAATGGCGGATT--TATTT---T-TC--C---CAGAT---AC-GT-A-GC-GC-A-TTACC--AAC--TTTT-TATT------TT------TAT-TGAAA-ATTTCG-A-T----AAAACGGG-CAATGC-CGGCAACC-TTCAAAAAGA-C-AG-ATG--C-GC----CGC--GG-------------GC-CT---GAGAACCATAATTCCAATTTT-ATTTGGC
gi|3 : ACTA-TATTTCTAC--GGTAA--CTGATCCAT-GTTA-TTTTTAAT-ACGCCAA--------CTATACAACCAGAAACAT---GTTTTTGTTTGTTTTTGGTT---TTTTA-TTAGGGATG--------GT---------TACG-TATA-AC---CCCAC-TTACTTACAGACAAAA---TGATGCTAAAGGAACC-CATGATA---------TTGTGAACTTTATGTTT-----AGGCCTA--CCTTTA--TTTG--CATA-CGTCTTAATT---TTA-C-TAGTGGACA-------A-ATATTT--T--TCCAT-ATCTATA-------TGCTCTGCTTCAATT---GTGGTCATTCTGCTTT-TCCAAAAAT-----------ACTTTCACA-ACAA--CAACGG-TTGCA-CCTGAACACG-----------------TCG-----TCAG-C-CAT--TGT---GCCCTAT---TTTAAAG--TTAGAGTTAT--TCCCGTTCCGG-AAATTAAAAAAACA-CCCGAAAGAT
gi|3 : tgatttacatgtatctgaatta---AAAGTTAGA--GTTATT----CCCG-T-TCCGGAAA--TTAAAAAAACAC-CCGAAAG-ATGAAA-CCAA---CAATCTAGA-ACAATGAAT----GCTCACCA-CTATC---GGTATCAGATTTCCAG--TCT-G----ACTAAAGTCCAAAC-CTAATACT------TATCATTT-TAGTAACTTA-G-AG--ACGAT-TT----TC-AATGAGTCGGCGA-CT-------GTT--------------TCG--CTGAA----TCAC-TA-A-CCATTGGAGTCAATATGGGGTAA-TT-GTAGCA--CC-GT---TC--AAAATG------GCCTTC----A------A--AGGTCTGTCGGAAGA---------------------------------GAA-AG-CA-GA-CG-AT-TTACTT--GGACCTAATATTAATACGG-AATACAGTTAT-TGAAT-ATGGATGCATGT----AGTAAAGTTA-TAT-ACC--TTACTAG------CCTGT-GATTCGG-AGTT--------AC--AAA----GATT-TC--AA--AATGAA--GC-GATT--TATTTTTAT-TC--C---CAGATC--AC-GTAA-GC-GC-A-TTACC--AAC--TTTT-TA---------T------TAT-TG-AA-ATTTCG-ATT----AAAATCGG-CAATG--CGGCGAC---TC-AAA--A-C--G-ATG--C-G-----CGCA-GG-------------GC-CT---GAGAACCGTAATTTCAATTgaaaccaacaatctagaacaatgaatgctcaccactatcggtatcagatttccagtctgactaaagtccaaacctaatacttatcattttagtaacttagagacgattttcaatgagtcggcgactgtttcgctgaatcactaaccattggagtcaatatggggtaattgtagcaccgttcaaaatggccttcaaaggtctgtcggaagagaaagcagacgatttacttggacctaatattaatacggaatacagttattgaatatggatgcatgtagtaaagttatataccttactagcctgtgattcggagttacaaagatttcaaaatgaagcgatttatttttattcccagatcacgtaagcgcattaccaactttttattattgaaatttcgattaaaatcggcaatgcggcgactcaaaacgatgcgcgcagggcctgagaaccgtaatttcaattattg
gi|4 : tgatttacatgtatctgaattaactatatttctacggtaactgatccatgttatttttaatacgccaactatacaaccagaaacatgtttttgtttgtttttggttttttattagggatggttacgtataaccccacttacttacagacaaaatgatgctaaaggaacccatgatattgtgaactttatgtttaggcctacctttatttgcatacgtcttaattttactagtggacaaatatttttccatatctatatgctctgcttcaattgtggtcattctgcttttccaaaaatactttcacaacaacaacggttgcacctgaacacgtcgtcagccattgtgccctattttAGATTTC-AG--ACT-G----ACTTGAGTC-AGAC-CT--TACT------TATCACTT-T-ATAATTTA-ATAGCATCAAT-TT----TTTAATGA-TCAGCAA-CT-------GT--------------ATCA--CTGAA----TCAC-TA-AGCAA-TGGAGTCAATAT-GGGGAA-TTATTGGCA--CCAG----TC--AATATG------G----CTCCGA------A--A--T-----GAAAGAATGCA--------------------------CCGAG-TG-CA-GA-CA-AT-TCACTT--AGATGTAATATTAATACGA-AACACAGTTCA-TGAAT-TTGG------GT----AG-GATGTTC-TCT-ACC-TTTACTGG------CCTGT-GATTTGGAAATCACATAAATGC--AAAATGGGAAATTC--AG--AATGAAT-GCGGATT--T-TTT---T-TCTTC---CAGAC---AT-GCAA-GC-CC-ATTTACC--AAC--TTTT-TA-T------TT------TAT-TGAAA-A-TTAG-A-T----AAAATTGG-TGATG--CGGCAACC--TCAAAA--attg
gi|5 : TACTT--GGACATAATATTAATACGG-AACACAGTTCA-TGAAT-TTGGGTACATGT----AG-GAAGTTA-TAT-ACC-TTTACTAG------ACTGT-GATTCGCATGTC--------AT--AAA----GAT--TC--AG--AATGCAT-GCAGATT--TATTT---TCCC--C---CAGAT---AT-TCAA-GT-GC-A-TTTCA--AAC--TTTT-TA-T------TT------TAC-TGAAACA--TCG-A-T----AAAATCAG-CGATGCAC--CAACC-TC--AAA--A-T-GG-ATG--C-A-----CGT--GG-------------GC-CT---GAGAACCGTAATTTCAATTCT-ATcgaat
gi|6 : tg-ACAGTAAAT----CTTCACCAACTATC---GGTATCAGATTTC-AG--TCT-G----AC-AAAGTC-AGAC-CT--TACTTTAAAATATCATTT-C-GTAAATT----AGCAACAAT-TT----TTCAATGG-TCGACAAGCT-------GTG-------------ATCG--CTGAA----TAACTTA-A-CAATTGGAGTCAAT-T-GGGTAA-TTAGTGGTA--CC-G----GC--TAAATG------G----T-----------A--A--TAAG-TGAAAGATTGCA--------------------------TTGAGTGG-CA-AA-CG-AT-TTA
gi|7 : c--TATTT---T-TC--C----AGAT---AC-GTTA-GC-AC-A-TAACC--AAC--TTTT-TA-T------TT------CATCTGAAG---TTCA-A-T----AAAATCAG-CAATGC-T-GCAACC---CAAAA--A-C-AA-ATG--C-A-----CGC--TG-------------GT-CT---GAac
gi|8 : aatttgttgaattctcccagccttaatgcctctgaaattaaattgcacaagtaagaaaaatgataaacaaacaacacagatgtcttaatcccacTAGATTCAAGAG--A-------ATGTAAA----AT---TC--AG--AATGAATG-TGGATT--T-TTT---T-TC--CTTTCAGAT---ACAGTAAAGC-AC-A-TTACT--AGC--TTTA-TA-T------TT------TAG-TGAAA-AAGT-G-A-T----GAAATCGG-CATCAT-C-ACAACG-TCC--AA--A-C-AC-ATG--C-G-----CAG--GG-------------GT-CT---GAG
gi|9 : ggcctgtgattccaaattttcaaC--C---CA------AC-GATA-GC-GC-A-TTACCCAAACCTTTTT-TA-TAATGAGTTAACTAGTAC-GGAAA-ATTTCGGA-T----AAAATCGGTCAATTG-CGGCAACCTTTC--AA--A-C-AGAATT--C-GGCAAACGC--AGCTTAAGACTGACTGCGCT---GAGAACAGTAATTTCAATTTTGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATCATATCACTTTGTTAAGCACAGATGTTAACGGCAATTAGTTGACAACTCA