lowQualScore : 22222222222222222222222222 111111 111111111111111111111111111111111
lowQualScore : 333 4 4 22222222222222222222222222 2 1 1 333 1 444444 4 6666 22 55 222 5555555555 1 1 111111 4444 4 1 22 555555555555555555555555555555555 1 1 2 1 1 1 1 2 1 1 1 55 44444444444 22 44 6666 2222 1 1 111 111 1 11 11 1 1 1111 3333 1 5555555555 11 11 1 1 33 1 1 333333333 1 1 33 11 1 1 111 1 11 333 1 1 2222222222 33333333 11 1 1111 11111 11 1 444444444444444 1 111 1 22222 333333333333 1 222222 2 1 1111111
lowQualScore : 888 6 0 6 0 22222222222222222222222222 3 3 3 111 0 3 333333 0 1111 77 55 888 3333333333 5 5 555555 0000 0 6 5 11 444444444444444444444444444444444 2 5 5 0 2 7 3 7 7 3 2 3 6 6 3 5 0 3 00 1 6 33333333333 77 77 6666 3 2 0 3 0000 0 5 111 777 0 33 33 2 0 3 0 6 0000 1111 0 2222222222 33 33 6 0 0 11 0 0 3 3 222222222 0 8 8 0 0 0 66 3 33 0 2 0 3 7 7 999 3 88 999 2 0 0 3 0 4 3333333333 11 66 44444444 33 33 5 4444 66666 11 0 6 333333333333333 0 999 0 33333 0 777777777777 6 0 8 8 333333 8 0 8 8 8 6 5 4444444 99 6
lowQualScore : ... . . . . .......................... . . . ... . . ...... . .... .. .. ... .......... . . ...... .... . . . .. ................................. . . . . . . . . . . . . . . . . . . .. . . ........... .. .. .... . . . . .... . . ... ... . .. .. . . . . . .... .... . .......... .. .. . . . .. . . . . ......... . . . . . . .. . .. . . . . . . ... . .. ... . . . . . . .......... .. .. ........ .. .. . .... ..... .. . . ............... . ... . ..... . ............ . . . . ...... . . . . . . . ....... .. .
lowQualScore : 000 0 0 0 0 00000000000000000000000000 3 3 3 000 7 3 000000 0 0000 55 00 000 5555555555 5 0 000000 0000 0 0 0 00 555555555555555555555555555555555 5 5 5 0 5 3 3 3 3 3 0 3 7 7 3 5 7 3 00 0 0 88888888888 55 55 5555 0 5 2 2 8888 0 5 000 000 0 88 88 5 0 2 0 5 2222 5555 0 5555555555 88 88 5 0 0 55 0 0 2 2 000000000 8 0 0 2 0 0 22 2 88 0 5 0 2 3 3 777 3 33 000 5 2 0 2 0 2 8888888888 55 88 99999999 88 55 5 8888 88888 88 0 0 888888888888888 0 000 0 00000 2 000000000000 0 8 0 0 000000 0 4 0 0 0 7 5 2222222 22 7
consensus : NNNNNNNNTAGGATAATTCATTTATTTTCCTCTACATAGGCGTC-GGAACCCGGGGGGGGGGGGGCTTAGCCGCCCCTTTTTTTTTTTTTGC-AAA-GATA-AACATAATATAGGCAA-TTACTCTTCTAAATTCTCAAATTAGAAACTGTTTTGTTGGTTTAGCCCCCCTCCCCCCCCTTCCCCNTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTNTCTTTGACGAGACAGAAATAAAACTCGAGCGATAGGAACAAAACTCGAGCGCTAGCTNTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATAATTTNCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACCAGAGTAAGTT-GTGGTTTTACGATTT-ATTAATAGATCGAAATAGTT-GAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGANCCGACTATTTNAGNTAATTATGTANTAGGCCTTATCATTTTTATCA-TAAAATGA-CGATACGA-A-CAATGATGA--TACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAAT-AAATAA-TTAAAAAGAT-ATATTNTTTT--TTCA--ATGTCGCA-CTTTGC-ATCAC--AGC-AACA-TTTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTT-TTCC-AAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTTGTTGCC-CGCAAA-AATA---T-TAT-TTTTGCTAAAGTTTTATC--T-ATATTTGG--CTTCAAAATCAAC-A--GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CAT-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATATGTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( gi|2 ) : ATGTATGATAGGATAATTGTCTTATTTTTCTCTA-ATGGGCGTCCGGAACC------GGGAGTTGTTT------TTTTTTTTTTTTTGTTGC-AAA-GATA-A-CATAACATAGGCAA-TTA-TCTT-TAAAT-CTCAACT--GAAACTGTT--GTTGGT--AGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTA------TATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTACA-CGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAGA--------T---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATA-TTTGCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACCAGAGTAAGTT-GTGGTTTTACGA-TT-ATTAATAAATCGGAATAGTT-GAGCCGT--TTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGGA--CGACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATTATTAAAATGA-CGATACGA-A-CAATGATGA--TACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAA-TTAAAAAGAT-AGATTGTTTT--TTCA--ATGTCGCA-CTTTGC-ATCACA-AGC-AACA-TTTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTT-TTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTTGTTGCC-CGCAAA-AGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCATAGTTGG--CTTCAAAATCAAC-A--GATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CAT-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA--GGATTACG-TCCTATATGTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTTCCTCTACATAGGCGTC-GGAACCCGGGGGGGGGGGGGCTTAGCCGCCCCTTTTTTTTTT-TTGC-AAAAGATA-AACATAACATAGGCAAATTACTCTTCTAAATTCTCAAATTAGAAACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAGA--------TT--GCAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGAT-CAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATAC-AGAGTAAGTT-GTG-TTTTACGA-TTTATTAATAA-TCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAATAAAATGAATGA-ACGA-AACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAATAA--TAA-TTAAAAA--T-A---TGTTTT--TTCA--ATGTCGCA-CTTTGC-ATCACC-AGC-AACAGTTTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTT-TTCC-AAAATTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAAC--CTGTAAAATATAT---CTGGTTGTTGCC-CGC-AA-AGTA---T-TTTATTTTGCTAAAGTTTCATC--TTAT--TTGG--CT--AAAATCAAC-A--GATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACATAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATATGTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|8 : catgtaatTTTTTTTTTTTTACAAAA-GATAGA-CAAAATATAGGCAA-Tatagccaataacgtccattg
gi|12 : atttcactcatctgatctataaatggcggtggaacgggctgggaaggggggcttagcctccctccccccccccTTTTTTTGC-AAA-GATA-AACATAATATAGGCAA-actctcataattcattattgtatttatactaggcaacttttggctgatttgtcccccc
gi|13 : ataggcgtcggaatcggggggggggggtgctagggtaagcccccccTT--GTTGGTTTAGCCCC---CCCCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|6 : ttTTCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATA-TTTCCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACTAGAGTAAGGT-GTGGTTTTACAATTT-ATTAATAGATCGAAATAGTT-GAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|10 : CCCTAAT--TATATGATGATTAACGA-TGTGATACACTAATCAAAAC--TT-AAATACCAAAGTAAGTTGGTGGTTTTACGATTT-ATTAATA
gi|9 : tcGAAATAGTT-GAGCCGTGTTTTTTATTTCTTAAAAGTGTGCGAA-----------TGAGCGGGATATTAGTA--ACCCGGAC-CGATTATT-TAGATAAATATGTATTAGGCCTTATAATTTTTATCA-TAAAAT
gi|5 : ATTATGTAGTAGGCCTTATCATTTT--------AAATGA-CGATACAA-A-CAATGATGA--TGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAAT--AATAA-TGAAAAAGAT--TATGTTTTT--TTCA--ATGTCGCA-CTTTGC-ATCAC--AGC-AACA-TTTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTT-TTAC-AAAATTCATATTGTTT--GC-AGCCAA-CAACCA
gi|3 : TATTATGCTTTCTCATTTCTATCATAAAAATGA-TGA--CGACA-CAATGGTGA---ACGTCA--AGAATCACT-TGCTG-TGATATTTA-ATTTACA--------GACCGG--AAATAA-TTAAAAAAATTATGTTTTTTTAATTCA--ATGTC-CA-GCTTGCCATCACACAGA-CACA-TT-CGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTC--AAAATTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGTT--TGTCGTGCAAA-AATAAAGTGTAT-TTTCTCCTAAGTATTATC--TAGTACTTATTTCTTCAAA-TCAAC-AAAGAGTTCGCGA-AA---ACC--AC-TTTGACACACCTTCACA---T-CA---AT-TAAA-ATTACGTCA-TTTTTTT-AATTAAAAAGCGATGAACGGATTACG-TCATAT-CATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAATGA-CGATACAA-A-CAATGATGA--TACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAAT-ATATAATTTAAAAA----AAATTATGTT--TTTATCATGTCACATCTTTGC-ATCAC--AGCAAACA-TTTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTT-TTCC-AAAATTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATAT-CTGGTTGTTGCC-CGCAAT-ATT----T-TAT-TTTTGGTAAAG--TTATCAAT-ATATTTGG--CTTTCAAATCAACAA--GATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CAT-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA--GGATGACGTTCCTATATGTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaatacacgtcccttgt
gi|5 : TGGTTGTTGGC-TGCAAACAATA---T-GAA-TTTTGTAAAAGTTT
gi|7 : attatgtagtaggccttatcattttaaatgacgatacaaacaatgatgatgtgcaagtccctctgccgtgagatttgatacatgtagcatacgaccaataataatgaaaaagattatgtttttttcaatgtcgcactttgcatcacagcaacatttcgtttccagggaggataaattataacgcacaaattcatactggaaaactaccgatttccatattcTATTTGG--CTTCAAA-TCAAC-A--GATTCCGCGA-A--CAACCCAAC-TTTGACGCACC---------------AAC-AAAGC-------CG-TTT------AATAA-----AAC------ATTACG-TCCTATATGTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|11 : ccTACG-TCCTATATGTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAAatagccaataacgtccttt
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 11 1 1 33333333 1 66666666666666666666666666 1 1 11 1 555555555555 1 1 11111 222222 1 2222222222222222222222222222222222 11 1 1 1 1 1 33 2 1111 1111 1 11 11 11 11 222 11 111 222222222 11 111 1 11 222 1 1 11111 1 3333333333 11 11 1111 1 2222222222222 11 111111 1 1
lowQualScore : 1 44 5 7 0 00000000 0 00000000000000000000000000 3 0 0 3 77 6 5 111111111111 7 3 99 3 2 11111 1 7 6 999999 88 2 5 3 55 0 2222222222222222222222222222222222 1 7 7 44 1 3 0 3 3 0 6 0 2 3 2 0 2 3 2 3 00 7 9999 11 1 0 3333 6 8 0 8 8 11 0 8 11 11 8 0 8 55 1 1 0 999 0 11 22 444 11 11 0 3 8 8 8 8 8 8 000 0 666666666 6 6 8 8 0 11 8 8 0 3 3 000 0 33 777 3 0 5 88888 0 66 8888888888 0 5 0 99 8 88 5 8 3 0 1 8 9999 8 0 0 8 44 1 7777777777777 44 6 1 6 2 6 999999 6 5 6 6 6 5 2 888888 77 5
lowQualScore : . .. . . . ........ . .......................... . . . . .. . . ............ . . .. . . ..... . . . ...... .. . . . .. . .................................. . . . .. . . . . . . . . . . . . . . . . .. . .... .. . . .... . . . . . .. . . .. .. . . . .. . . . ... . .. .. ... .. .. . . . . . . . . ... . ......... . . . . . .. . . . . . ... . .. ... . . . ..... . .. .......... . . . .. . .. . . . . . . .... . . . . .. . ............. .. . . . . . ...... . . . . . . . ...... .. .
lowQualScore : 0 00 0 0 0 00000000 0 55555555555555555555555555 2 0 0 2 33 7 0 000000000000 3 3 99 2 3 33333 0 3 7 000000 00 5 5 0 00 7 7777777777777777777777777777777777 0 3 3 77 0 2 0 2 2 0 5 0 5 2 0 0 5 2 5 7 00 0 3333 77 0 8 2222 7 0 6 0 0 00 8 0 00 00 0 8 0 88 4 0 8 666 8 00 22 222 66 00 8 2 0 0 0 0 0 0 000 8 777777777 7 7 0 0 8 00 0 0 8 2 2 222 0 88 000 2 0 5 55555 0 88 0000000000 8 6 8 00 0 66 6 0 2 8 4 0 8888 0 6 8 0 00 4 0000000000000 55 7 8 7 5 7 222222 7 5 7 7 7 7 0 333333 99 7
consensus : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGT-CGGAACC-GGG---GGGGGGGGG-GCT----T-AGCCNCCC----------CTTTTTTTTTTTTTGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAA---ATT------CTCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGA-AT-----TCG-GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATAATTTNCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGGA-CCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-A-TAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAAT-AAATAATT--AAAAAGAT-ATATTTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-C-AGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCC-AAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAA--CCTGTAAAATATATA--CTGGTTGTTGCC-CGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACA-AGATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( family-725 ) : NNNNNNNNTAGGATAATTCATTTATTTT-CCTCTACATAGGCGT-CGGAACCCGGG---GGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTTTGC-AAA-GATAAACATAATATAGGCAA-TTACTCTTCTAA---ATT------CTCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCCCCCTTCCCCNTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTNTCTTTGACGAGACAGAAATAAAACTCGAGCGATAGGAACAAAACTCGAGCGCTAGCTNTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATAATTTNCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGAAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGANCCGACTATTTNAGNTAATTATGTANTAGGCCTTATCATTTTTATC-A-TAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAAT-AAATAATT--AAAAAGAT-ATATTNTTTT--TTCAATGTCGCA-CTTTGC-ATCA-C-AGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCC-AAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAA--CCTGTAAAATATATA--CTGGTTGTTGCC-CGCAAAAATA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAAC--AGATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTT-CCTCTACATAGGCGT-CGGAACCCGGG---GGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT-GC-AAAAGATAAACATAACATAGGCAAATTACTCTTCTAA---ATT------CTCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAGA--------TTG--CAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGAT-CAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATAC-AGAGTAAGTT-GTG-TTTTACGATTTATTAATA-ATCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAA-TAAAA-TGAATGA-ACGAA-ACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAAT--AATAATT--AAAA--AT-A---TGTTTT--TTCAATGTCGCA-CTTTGC-ATCACC-AGCA-A-CAGT-TTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTTTTCC-AAAATTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAA--CCTGTAAAATATAT---CTGGTTGTTGCC-CGC-AAAGTA---T-TTTATTTTGCTAAAGTTTCATC--T-------TATTTGGCT--AAAATCAAC--AGATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACA--TAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|10 : catgtaatTCCCCTAAT--TATATGATGATTAACGA-TGTGATACACTAATCAAAAC--TT-AAATACCAAAGTAAGTTGGTGGTTTTACGATTTATTAATAatagccaataacgtccattg
gi|11 : TACGT-CCTATAT-GTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAA
gi|12 : ATAGGCGT-CGGAATC-GGG---GGGGGGGGGTGCTAGGGTAAGCCCCCC----------C------TTTTTTTGC-AAA-GATAAACATAATATAGGCAA-
gi|13 : TTTTGTTGGTTTAGCCCCCC---CCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaataacgtccct
gi|2 : TAGGATAATTGTCTTATTTT-TCTCTA-ATGGGCGTCCGGAACC---------GGGAGTT-GTT----T-------TT----------TTTTTTTTTTTGTTGC-AAA-GAT-AACATAACATAGGCAA-TTA-TCTT-TAA---A-T------CTCAACT--GA-AACTG--TTGTTGG--TAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTC------TATATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTAC-ACGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAG--AT---------GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTGCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACCAGAGTAAGTT-GTGGTTTTACGA-TTATTAATAAATCGGAATAG-TTGAGCC--GTTTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGGA--CGACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATT-ATTAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAATT--AAAAAGAT-AGATTGTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CAAGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAA--CCTGTAAAATATATA--CTGGTTGTTGCC-CGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCA-----TAGTTGGCTTCAAAATCAAC--AGATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA--GGATTACG-TCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|3 : atgtatgaTATTATGCTTTCTCATTTCTATC-A-TAAAAATG-ATGA--CG-ACACAATGGTG--A-ACGTCA--AGAATCACT-TGCTG-TGATATTTA-AT-----TTACA---GACCGG--AAATAATT--AAAAAAATTATGTTTTTTTAATTCAATGTC-CA-GCTTGCCATCA-C-A-CAGA-CA-CATTCGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTC-AAAATTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGT--TTGTCGTGCAAAAATAAAGTGTAT-TTTCTCCTAAGTATTATC--T-AGTACTTATTT--CTTC-AAATCAACAAAGAGTTCGCGA-A---AACC--AC-TTTGACACACCTTC---ACAT-CA----ATT-AAA--ATTACGTCA-TTTTTT-TAATTAAAAAGCGATGAACGGATTACGT---CATATCATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAA-TG-ACGATACA-A-ACAATGATG--ATACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAAT-ATATAATTTAAAAAAAAT--TATGTTTTT--ATCA-TGTCACATCTTTGC-ATCA-C-AGCA-AACA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCC-AAAATTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAA--CCTGTAAAATATATAT-CTGGTTGTTGCC-CGC-AATATT---T-TAT-TTTTGGTAAAG--TTATCAAT-A-----TATTTGGCTTTCAAATCAACA-AGATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CA--T-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA--GGATGACGTTCCTATAT-GTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|5 : ATTATGTAGTAGGCCTTATCATTTT---------AAA-TG-ACGATACA-A-ACAATGATG--ATGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAAT-AA-TAATG--AAAAAGAT--TATGTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-C-AGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTTTTAC-AAAATTCATATTGTTT--GC-AGCCAA-CAACCAatagccaatacacgtcccttgt
gi|6 : TCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATA-TTTCCCCTAATATTATACGATGATTAACGA-TCTAATACACTAATCAAAACTTTT-AAATACTAGAGTAAGGT-GTGGTTTTACAATTTATTAATAGATCGAAATAG-TTGAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|7 : t-----TATTTGGCTTCAAA-TCAAC--AGATTCCGCGA-A--CAACCCAAC-TTTGACGCAC--CAACAAAGC-CGTTT-AAT-AAAACATTACG------TCCTATATGTG-------------------------TATAT-G---------AAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|8 : ccTTCACTCATCTGATCTATAAAT-GGCGG-TGGAAC--GGGCTGGGAAGGGGG-GCT----T-AGCCTCCCTCCCCCCCCCC-TTTTTTTTTTTTACAAAA-GATAGACAAAATATAGGCAA--TACTCTCATAATTCATTATTGTATTTATACTAGGCAACT-TTTGGCTGATTTGTCCCCCCatagccaataacgtccttt
gi|9 : atGAAATAG-TTGAGCCGTGTTTTTTATTTCTTAAAAGTGTGC-----------GAATGAGCGGGATATTAGTA--ACCCGGA-CCGATTATTT-AGATAAATATGTATTAGGCCTTATAATTTTTATC-A-TAAAA-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT
Alignments
lowQualScore : 1 1 1 1 11 1 222222 555555555555 111 1 1 11 1 5555555555 1 11111 222222 1 9999999999999 1 5555555555 2 1 11 1 1 1 11 11 1 1111 1 11 11 11 11 11 11 111 222222222 11 111 1 11 222 1 222222 1 3333333333 1 111 1111 2222222222222 11 111111 1 1
lowQualScore : 3 0 1 0 0 33 2 00 0 888888 1 333333333333 777 0 0 3 77 6 3 7 8888888888 7 3 6 66 3 2 3 00000 7 6 999999 22 1 5 1 22 1111111111111 0 3 8888888888 7 7 3 1 3 0 3 33 2 0 2 3 2 0 11 2 3 88 3 6 2222 0 99 8 6 8 0 8 8 11 0 8 11 11 8 0 8 55 1 1 0 11 88 11 22 88 666 11 0 3 8 8 8 8 8 8 000 0 666666666 6 6 8 8 0 11 8 8 0 3 3 000 0 33 777 0 2 3 0 111111 0 66 8888888888 0 0 999 8 88 5 8 3 0 8 9999 8 55 0 8 44 1 7777777777777 44 6 1 6 2 6 999999 6 5 6 6 6 5 2 888888 77 5
lowQualScore : . . . . . .. . .. . ...... . ............ ... . . . .. . . . .......... . . . .. . . . ..... . . ...... .. . . . .. ............. . . .......... . . . . . . . .. . . . . . . .. . . .. . . .... . .. . . . . . . .. . . .. .. . . . .. . . . .. .. .. .. .. ... .. . . . . . . . . ... . ......... . . . . . .. . . . . . ... . .. ... . . . . ...... . .. .......... . . ... . .. . . . . . .... . .. . . .. . ............. .. . . . . . ...... . . . . . . . ...... .. .
lowQualScore : 3 0 2 0 0 88 5 55 0 222222 0 222222222222 000 0 0 2 33 7 3 3 3333333333 3 3 7 22 2 5 7 77777 3 7 000000 00 0 5 0 00 3333333333333 7 3 3333333333 3 3 7 0 2 0 2 22 5 0 5 2 0 0 88 5 7 33 3 7 7777 8 44 0 7 0 6 0 0 00 8 0 00 00 0 8 0 88 4 0 8 66 88 00 22 66 888 00 8 2 0 0 0 0 0 0 000 8 777777777 7 7 0 0 8 00 0 0 8 2 2 222 0 88 000 0 5 2 2 888888 0 88 0000000000 8 6 444 0 88 6 0 2 8 0 8888 0 88 8 0 00 4 0000000000000 55 7 8 7 5 7 222222 7 5 7 7 7 7 0 333333 99 7
consensus : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATA-TTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGAT-ATATNTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( family-725 ) : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCNCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------TTCG-GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATAATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGAT-ATATTTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTT-CCTCTACATAGGCGTC-GGAACCCGG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT---GC-AAAAGATAAACATAACATAGGCAAATTACTCTTCTAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAG-A------TT---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGA-TCAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATA-CAGAGTAAGTT-GT-GTTTTACGATTTATTAATA-ATCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAAT-AAAA-TGAATGA-ACGAA-ACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAAT-AA-TAATT--AAAA--AT-ATG---TTTT--TTCAATGTCGCA-CTTTGC-ATCACCA-GCA-A-CAGT-TTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAAC--CTGTAAAATATAT---CTGGTT-GTTGCCCGC-AAAGTA---T-TTTATTTTGCTAAAGTTTCATC--T-------TATTTGGCT--AAAATCAAC-A-GATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACA--TAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|10 : catgtaatTCCCCTAAT--TATATGATGATTAACG-ATGTGATACACTAATCAAAAC---TTAAATACCAAAGTAAGTTGGTGGTTTTACGATTTATTAATAatagccaataacgtccattg
gi|11 : TACGT-CCTATAT-GTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAA
gi|12 : -ATAGGCGTC-GGAATC-GG--GGGGGGGGGGTGCTAGGGTAAGCCCCCC----------C------TTTTTT--TGC-AAA-GATAAACATAATATAGGCAA-
gi|13 : TTTTGTTGGTTTAGCCCC---CCCCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaataacgtccct
gi|2 : TAGGATAATTGTCTTATTTT-TCTCTA-ATGGGCGTCCGGAACC-GG--G-------------------AGTTGTTT----------TTTTTTTTTTTTTGTTGC-AAA-GATAA-CATAACATAGGCAA-TTA-TCTT-TAAAT-C----------TCAACT--GA-AACTGTT--GTTGGT--AGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTA------TATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTACA-CGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAGA--------T---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATA-TTTGCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATT-ATTAATAAATCGGAATAG-TTGAGCCGT--TTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGG-AC-GACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATT-ATTAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAATT--AAAAAGAT-AGATTGTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CAAGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCA-----TAGTTGGCTTCAAAATCAAC-A-GATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA--GGATTACG-TCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|3 : atgtatgaTATTATGCTTTCTCATTTCTATC-AT-AAAAATG-ATGA--CG-ACACAATGGTG--A-ACGTCA--AGAATCACT-TGCTG-TGATATTTA-AT-----TTACA---GACCGG-AAA-TAATT--AAAAAAATTATGTTTTTTTAATTCAATGTC-CA-GCTTGCCATCA-CA--CAGA-CA-CATTCGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTCAAAA-TTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGTTTGTCGT--GCAAAAATAAAGTGTAT-TTTCTCCTAAGTATTATC--T-AGTACTTATTT--CTTCAAA-TCAACAAAGAGTTCGCGA-AA---ACC--AC-TTTGACACACCTTCACA---T-CA-----AT-TAAA-ATTACGTCA-TTTTTT-TAATTAAAAAGCGATGAACGGATTACGT---CATATCATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAA-TG-ACGATACA-A-ACAATGATG--ATACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAATATA-TAATTTAAAAAAAAT--TATGTTTTT--ATCA-TGTCACATCTTTGC-ATCA-CA-GCA-AACA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATAT-CTGGTT-GTTGCCCGCAATATT----T-TAT-TTTTGGTAAAG--TTATCAAT-A-----TATTTGGCTTTCAAATCAACAA-GATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CA--T-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA--GGATGACGTTCCTATAT-GTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|5 : ATTATGTAGTAGGCCTTATCATTTT---------AAA-TG-ACGATACA-A-ACAATGATG--ATGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAATAA--TAATG--AAAAAGAT--TATGTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTTTTACAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAatagccaatacacgtcccttgt
gi|6 : TCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATATA-TTTCCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACTAGAGTAAGGT-GTGGTTTTACAATTTATTAATAGATCGAAATAG-TTGAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|7 : t-----TATTTGGCTTCAAA-TCAACA--GATTCCGCGA-A--CAACCCAAC-TTTGACGCAC--CAACAAAGC-CGTTT-AAT-AAAACATTACG------TCCTATATGTG-------------------------TATAT-G---------AAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|8 : ccTTCACTCATCTGATCTATA-AATGGCGGT-GGAACG-GGCTGGGAAGGGGG-GCT----T-AGCCTCCCTCCCCCCCCCC-TTTTTTTTTTT--TACAAAA-GATAGACAAAATATAGGCAA--TACTCTC-ATAATTCATTATTGTATTTATACTAGGCAACT-TTTGGCTGATTTGTCCCCCCatagccaataacgtccttt
gi|9 : atGAAATAG-TTGAGCCGTGTTTTTTATTTCTTAAAAGTGTGC-----------GAATGAGCGGGATATTAGTA--ACCCGG-ACCGATTATTT-AGATAAATATGTATTAGGCCTTATAATTTTTATC-AT-AAAA-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT
Alignments
lowQualScore : 1 1 1 1 11 1 222222 555555555555 111 1 1 11 1 5555555555 1 11111 222222 1 7777777777777 1 5555555555 1 1 11 1 1 1 11 11 1 1111 1 11 11 11 11 11 11 111 222222222 11 111 1 11 222 1 222222 1 3333333333 1 111 1111 2222222222222 11 111111 1 1
lowQualScore : 3 0 1 0 0 33 2 00 0 888888 2 333333333333 777 0 0 3 77 6 3 7 8888888888 7 3 6 66 3 2 3 00000 7 6 999999 22 1 5 1 22 1111111111111 0 3 8888888888 7 7 3 1 3 0 3 33 2 0 2 3 2 0 11 2 3 88 3 6 2222 0 99 8 6 8 0 8 8 11 0 8 11 11 8 0 8 55 1 1 0 11 88 11 22 88 66 11 0 3 8 8 8 8 8 8 000 0 666666666 6 6 8 8 0 11 8 8 0 3 3 000 0 33 777 0 2 3 0 111111 0 66 8888888888 0 0 999 8 88 5 8 3 0 8 9999 8 55 0 8 44 1 7777777777777 44 6 1 6 2 6 999999 6 5 6 6 6 5 2 888888 77 5
lowQualScore : . . . . . .. . .. . ...... . ............ ... . . . .. . . . .......... . . . .. . . . ..... . . ...... .. . . . .. ............. . . .......... . . . . . . . .. . . . . . . .. . . .. . . .... . .. . . . . . . .. . . .. .. . . . .. . . . .. .. .. .. .. .. .. . . . . . . . . ... . ......... . . . . . .. . . . . . ... . .. ... . . . . ...... . .. .......... . . ... . .. . . . . . .... . .. . . .. . ............. .. . . . . . ...... . . . . . . . ...... .. .
lowQualScore : 3 0 2 0 0 88 5 55 0 222222 5 222222222222 000 0 0 2 33 7 3 3 3333333333 3 3 7 22 2 5 7 77777 3 7 000000 00 0 5 0 00 0000000000000 7 3 3333333333 3 3 3 0 2 0 2 22 5 0 5 2 0 0 88 5 7 33 3 7 7777 8 44 0 7 0 6 0 0 00 8 0 00 00 0 8 0 88 4 0 8 66 88 00 22 66 66 00 8 2 0 0 0 0 0 0 000 8 777777777 7 7 0 0 8 00 0 0 8 2 2 222 0 88 000 0 5 2 2 888888 0 88 0000000000 8 6 444 0 88 6 0 2 8 0 8888 0 88 8 0 00 4 0000000000000 55 7 8 7 5 7 222222 7 5 7 7 7 7 0 333333 99 7
consensus : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGAT-ATATGTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( family-725 ) : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGAT-ATATNTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTT-CCTCTACATAGGCGTC-GGAACCCGG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT---GC-AAAAGATAAACATAACATAGGCAAATTACTCTTCTAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAG-A------TT---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGA-TCAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATA-CAGAGTAAGTT-GT-GTTTTACGATTTATTAATA-ATCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAAT-AAAA-TGAATGA-ACGAA-ACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAAT-AA-TAATT--AAAA-----ATATG-TTTT--TTCAATGTCGCA-CTTTGC-ATCACCA-GCA-A-CAGT-TTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAAC--CTGTAAAATATAT---CTGGTT-GTTGCCCGC-AAAGTA---T-TTTATTTTGCTAAAGTTTCATC--T-------TATTTGGCT--AAAATCAAC-A-GATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACA--TAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|10 : catgtaatTCCCCTAAT--TATATGATGATTAACG-ATGTGATACACTAATCAAAAC---TTAAATACCAAAGTAAGTTGGTGGTTTTACGATTTATTAATAatagccaataacgtccattg
gi|11 : TACGT-CCTATAT-GTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAA
gi|12 : -ATAGGCGTC-GGAATC-GG--GGGGGGGGGGTGCTAGGGTAAGCCCCCC----------C------TTTTTT--TGC-AAA-GATAAACATAATATAGGCAA-
gi|13 : TTTTGTTGGTTTAGCCCC---CCCCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaataacgtccct
gi|2 : TAGGATAATTGTCTTATTTT-TCTCTA-ATGGGCGTCCGGAACC-GG--G-------------------AGTTGTTT----------TTTTTTTTTTTTTGTTGC-AAA-GATAA-CATAACATAGGCAA-TTA-TCTT-TAAAT-C----------TCAACT--GA-AACTGTT--GTTGGT--AGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTA------TATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTACA-CGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAGA--------T---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTGCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATT-ATTAATAAATCGGAATAG-TTGAGCCGT--TTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGG-AC-GACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATT-ATTAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAATT--AAAAAGAT-AGATTGTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CAAGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCA-----TAGTTGGCTTCAAAATCAAC-A-GATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA--GGATTACG-TCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|3 : atgtatgaTATTATGCTTTCTCATTTCTATC-AT-AAAAATG-ATGA--CG-ACACAATGGTG--A-ACGTCA--AGAATCACT-TGCTG-TGATATTTA-AT-----TTACA---GACCGG-AAA-TAATT--AAAAAAATTATGTTTTTTTAATTCAATGTC-CA-GCTTGCCATCA-CA--CAGA-CA-CATTCGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTCAAAA-TTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGTTTGTCGT--GCAAAAATAAAGTGTAT-TTTCTCCTAAGTATTATC--T-AGTACTTATTT--CTTCAAA-TCAACAAAGAGTTCGCGA-AA---ACC--AC-TTTGACACACCTTCACA---T-CA-----AT-TAAA-ATTACGTCA-TTTTTT-TAATTAAAAAGCGATGAACGGATTACGT---CATATCATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAA-TG-ACGATACA-A-ACAATGATG--ATACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAATATA-TAATTTAAAAAAAAT--TATGTTTTT--ATCA-TGTCACATCTTTGC-ATCA-CA-GCA-AACA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATAT-CTGGTT-GTTGCCCGCAATATT----T-TAT-TTTTGGTAAAG--TTATCAAT-A-----TATTTGGCTTTCAAATCAACAA-GATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CA--T-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA--GGATGACGTTCCTATAT-GTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|5 : ATTATGTAGTAGGCCTTATCATTTT---------AAA-TG-ACGATACA-A-ACAATGATG--ATGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAATAA--TAATG--AAAAAGAT--TATGTTTTT--TTCAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTTTTACAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAatagccaatacacgtcccttgt
gi|6 : TCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTCCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACTAGAGTAAGGT-GTGGTTTTACAATTTATTAATAGATCGAAATAG-TTGAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|7 : t-----TATTTGGCTTCAAA-TCAACA--GATTCCGCGA-A--CAACCCAAC-TTTGACGCAC--CAACAAAGC-CGTTT-AAT-AAAACATTACG------TCCTATATGTG-------------------------TATAT-G---------AAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|8 : ccTTCACTCATCTGATCTATA-AATGGCGGT-GGAACG-GGCTGGGAAGGGGG-GCT----T-AGCCTCCCTCCCCCCCCCC-TTTTTTTTTTT--TACAAAA-GATAGACAAAATATAGGCAA--TACTCTC-ATAATTCATTATTGTATTTATACTAGGCAACT-TTTGGCTGATTTGTCCCCCCatagccaataacgtccttt
gi|9 : atGAAATAG-TTGAGCCGTGTTTTTTATTTCTTAAAAGTGTGC-----------GAATGAGCGGGATATTAGTA--ACCCGG-ACCGATTATTT-AGATAAATATGTATTAGGCCTTATAATTTTTATC-AT-AAAA-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT
Alignments
lowQualScore : 1 1 1 1 11 1 222222 555555555555 111 1 1 11 1 5555555555 1 11111 222222 1 7777777777777 1 5555555555 1 1 11 1 1 1 11 11 1 1111 1 11 11 11 11 2 1111 111 222222222 11 111 1 11 222 1 222222 1 3333333333 1 111 1111 2222222222222 11 111111 1 1
lowQualScore : 3 0 1 0 0 33 2 00 0 888888 2 333333333333 777 0 0 3 77 6 3 7 8888888888 7 3 6 66 3 2 3 00000 7 6 999999 22 1 5 1 22 1111111111111 0 3 8888888888 7 7 3 1 3 0 3 33 2 0 2 3 2 0 11 2 3 88 3 6 2222 0 99 8 6 8 0 8 8 11 0 8 11 11 8 0 8 55 1 1 0 11 88 11 22 0 5 7777 0 3 8 8 8 8 8 8 000 0 666666666 6 6 8 8 0 11 8 8 0 3 3 000 0 33 777 0 2 3 0 111111 0 66 8888888888 0 0 999 8 88 5 8 3 0 8 9999 8 55 0 8 44 1 7777777777777 44 6 1 6 2 6 999999 6 5 6 6 6 5 2 888888 77 5
lowQualScore : . . . . . .. . .. . ...... . ............ ... . . . .. . . . .......... . . . .. . . . ..... . . ...... .. . . . .. ............. . . .......... . . . . . . . .. . . . . . . .. . . .. . . .... . .. . . . . . . .. . . .. .. . . . .. . . . .. .. .. .. . . .... . . . . . . . . ... . ......... . . . . . .. . . . . . ... . .. ... . . . . ...... . .. .......... . . ... . .. . . . . . .... . .. . . .. . ............. .. . . . . . ...... . . . . . . . ...... .. .
lowQualScore : 3 0 2 0 0 88 5 55 0 222222 5 222222222222 000 0 0 2 33 7 3 3 3333333333 3 3 7 22 2 5 7 77777 3 7 000000 00 0 5 0 00 0000000000000 7 3 3333333333 3 3 3 0 2 0 2 22 5 0 5 2 0 0 88 5 7 33 3 7 7777 8 44 0 7 0 6 0 0 00 8 0 00 00 0 8 0 88 4 0 8 66 88 00 22 4 6 0000 8 2 0 0 0 0 0 0 000 8 777777777 7 7 0 0 8 00 0 0 8 2 2 222 0 88 000 0 5 2 2 888888 0 88 0000000000 8 6 444 0 88 6 0 2 8 0 8888 0 88 8 0 00 4 0000000000000 55 7 8 7 5 7 222222 7 5 7 7 7 7 0 333333 99 7
consensus : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( family-725 ) : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTT-CCTCTACATAGGCGTC-GGAACCCGG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT---GC-AAAAGATAAACATAACATAGGCAAATTACTCTTCTAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAG-A------TT---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGA-TCAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATA-CAGAGTAAGTT-GT-GTTTTACGATTTATTAATA-ATCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAAT-AAAA-TGAATGA-ACGAA-ACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAAT-AA-TAATT--AAAA----ATATG-TTTTTT----CAATGTCGCA-CTTTGC-ATCACCA-GCA-A-CAGT-TTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAAC--CTGTAAAATATAT---CTGGTT-GTTGCCCGC-AAAGTA---T-TTTATTTTGCTAAAGTTTCATC--T-------TATTTGGCT--AAAATCAAC-A-GATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACA--TAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|10 : catgtaatTCCCCTAAT--TATATGATGATTAACG-ATGTGATACACTAATCAAAAC---TTAAATACCAAAGTAAGTTGGTGGTTTTACGATTTATTAATAatagccaataacgtccattg
gi|11 : TACGT-CCTATAT-GTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAA
gi|12 : -ATAGGCGTC-GGAATC-GG--GGGGGGGGGGTGCTAGGGTAAGCCCCCC----------C------TTTTTT--TGC-AAA-GATAAACATAATATAGGCAA-
gi|13 : TTTTGTTGGTTTAGCCCC---CCCCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaataacgtccct
gi|2 : TAGGATAATTGTCTTATTTT-TCTCTA-ATGGGCGTCCGGAACC-GG--G-------------------AGTTGTTT----------TTTTTTTTTTTTTGTTGC-AAA-GATAA-CATAACATAGGCAA-TTA-TCTT-TAAAT-C----------TCAACT--GA-AACTGTT--GTTGGT--AGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTA------TATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTACA-CGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAGA--------T---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTGCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATT-ATTAATAAATCGGAATAG-TTGAGCCGT--TTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGG-AC-GACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATT-ATTAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAATT--AAAAAGATAGATTGTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CAAGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCA-----TAGTTGGCTTCAAAATCAAC-A-GATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA--GGATTACG-TCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|3 : atgtatgaTATTATGCTTTCTCATTTCTATC-AT-AAAAATG-ATGA--CG-ACACAATGGTG--A-ACGTCA--AGAATCACT-TGCTG-TGATATTTA-AT-----TTACA---GACCGG-AAA-TAATT--AAAAAAAT-TATGTTTTTTTAATTCAATGTC-CA-GCTTGCCATCA-CA--CAGA-CA-CATTCGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTCAAAA-TTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGTTTGTCGT--GCAAAAATAAAGTGTAT-TTTCTCCTAAGTATTATC--T-AGTACTTATTT--CTTCAAA-TCAACAAAGAGTTCGCGA-AA---ACC--AC-TTTGACACACCTTCACA---T-CA-----AT-TAAA-ATTACGTCA-TTTTTT-TAATTAAAAAGCGATGAACGGATTACGT---CATATCATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAA-TG-ACGATACA-A-ACAATGATG--ATACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAATATA-TAATTTAAAAAAAAT-TATGTTTTTAT----CA-TGTCACATCTTTGC-ATCA-CA-GCA-AACA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATAT-CTGGTT-GTTGCCCGCAATATT----T-TAT-TTTTGGTAAAG--TTATCAAT-A-----TATTTGGCTTTCAAATCAACAA-GATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CA--T-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA--GGATGACGTTCCTATAT-GTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|5 : ATTATGTAGTAGGCCTTATCATTTT---------AAA-TG-ACGATACA-A-ACAATGATG--ATGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAATAA--TAATG--AAAAAGAT-TATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTTTTACAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAatagccaatacacgtcccttgt
gi|6 : TCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTCCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACTAGAGTAAGGT-GTGGTTTTACAATTTATTAATAGATCGAAATAG-TTGAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|7 : t-----TATTTGGCTTCAAA-TCAACA--GATTCCGCGA-A--CAACCCAAC-TTTGACGCAC--CAACAAAGC-CGTTT-AAT-AAAACATTACG------TCCTATATGTG-------------------------TATAT-G---------AAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|8 : ccTTCACTCATCTGATCTATA-AATGGCGGT-GGAACG-GGCTGGGAAGGGGG-GCT----T-AGCCTCCCTCCCCCCCCCC-TTTTTTTTTTT--TACAAAA-GATAGACAAAATATAGGCAA--TACTCTC-ATAATTCATTATTGTATTTATACTAGGCAACT-TTTGGCTGATTTGTCCCCCCatagccaataacgtccttt
gi|9 : atGAAATAG-TTGAGCCGTGTTTTTTATTTCTTAAAAGTGTGC-----------GAATGAGCGGGATATTAGTA--ACCCGG-ACCGATTATTT-AGATAAATATGTATTAGGCCTTATAATTTTTATC-AT-AAAA-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT
Alignments
lowQualScore : 1 1 1 1 11 1 222222 555555555555 111 1 1 11 1 5555555555 1 11111 222222 1 7777777777777 1 5555555555 1 1 11 1 1 1 11 11 1 1111 1 11 11 11 11 2 1111 111 222222222 11 111 1 11 222 1 222222 1 3333333333 1 111 1111 2222222222222 11 111111 1 1
lowQualScore : 3 0 1 0 0 33 2 00 0 888888 2 333333333333 777 0 0 3 77 6 3 7 8888888888 7 3 6 66 3 2 3 00000 7 6 999999 22 1 5 1 22 1111111111111 0 3 8888888888 7 7 3 1 3 0 3 33 2 0 2 3 2 0 11 2 3 88 3 6 2222 0 99 8 6 8 0 8 8 11 0 8 11 11 8 0 8 55 1 1 0 11 88 11 22 0 5 7777 0 3 8 8 8 8 8 8 000 0 666666666 6 6 8 8 0 11 8 8 0 3 3 000 0 33 777 0 2 3 0 111111 0 66 8888888888 0 0 999 8 88 5 8 3 0 8 9999 8 55 0 8 44 1 7777777777777 44 6 1 6 2 6 999999 6 5 6 6 6 5 2 888888 77 5
lowQualScore : . . . . . .. . .. . ...... . ............ ... . . . .. . . . .......... . . . .. . . . ..... . . ...... .. . . . .. ............. . . .......... . . . . . . . .. . . . . . . .. . . .. . . .... . .. . . . . . . .. . . .. .. . . . .. . . . .. .. .. .. . . .... . . . . . . . . ... . ......... . . . . . .. . . . . . ... . .. ... . . . . ...... . .. .......... . . ... . .. . . . . . .... . .. . . .. . ............. .. . . . . . ...... . . . . . . . ...... .. .
lowQualScore : 3 0 2 0 0 88 5 55 0 222222 5 222222222222 000 0 0 2 33 7 3 3 3333333333 3 3 7 22 2 5 7 77777 3 7 000000 00 0 5 0 00 0000000000000 7 3 3333333333 3 3 3 0 2 0 2 22 5 0 5 2 0 0 88 5 7 33 3 7 7777 8 44 0 7 0 6 0 0 00 8 0 00 00 0 8 0 88 4 0 8 66 88 00 22 4 6 0000 8 2 0 0 0 0 0 0 000 8 777777777 7 7 0 0 8 00 0 0 8 2 2 222 0 88 000 0 5 2 2 888888 0 88 0000000000 8 6 444 0 88 6 0 2 8 0 8888 0 88 8 0 00 4 0000000000000 55 7 8 7 5 7 222222 7 5 7 7 7 7 0 333333 99 7
consensus : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( family-725 ) : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTT-CCTCTACATAGGCGTC-GGAACCCGG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT---GC-AAAAGATAAACATAACATAGGCAAATTACTCTTCTAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAG-A------TT---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGA-TCAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATA-CAGAGTAAGTT-GT-GTTTTACGATTTATTAATA-ATCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAAT-AAAA-TGAATGA-ACGAA-ACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAAT-AA-TAATT--AAAA----ATATG-TTTTTT----CAATGTCGCA-CTTTGC-ATCACCA-GCA-A-CAGT-TTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAAC--CTGTAAAATATAT---CTGGTT-GTTGCCCGC-AAAGTA---T-TTTATTTTGCTAAAGTTTCATC--T-------TATTTGGCT--AAAATCAAC-A-GATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACA--TAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|10 : catgtaatTCCCCTAAT--TATATGATGATTAACG-ATGTGATACACTAATCAAAAC---TTAAATACCAAAGTAAGTTGGTGGTTTTACGATTTATTAATAatagccaataacgtccattg
gi|11 : TACGT-CCTATAT-GTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAA
gi|12 : -ATAGGCGTC-GGAATC-GG--GGGGGGGGGGTGCTAGGGTAAGCCCCCC----------C------TTTTTT--TGC-AAA-GATAAACATAATATAGGCAA-
gi|13 : TTTTGTTGGTTTAGCCCC---CCCCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaataacgtccct
gi|2 : TAGGATAATTGTCTTATTTT-TCTCTA-ATGGGCGTCCGGAACC-GG--G-------------------AGTTGTTT----------TTTTTTTTTTTTTGTTGC-AAA-GATAA-CATAACATAGGCAA-TTA-TCTT-TAAAT-C----------TCAACT--GA-AACTGTT--GTTGGT--AGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTA------TATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTACA-CGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAGA--------T---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTGCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATT-ATTAATAAATCGGAATAG-TTGAGCCGT--TTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGG-AC-GACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATT-ATTAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAATT--AAAAAGATAGATTGTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CAAGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCA-----TAGTTGGCTTCAAAATCAAC-A-GATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA--GGATTACG-TCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|3 : atgtatgaTATTATGCTTTCTCATTTCTATC-AT-AAAAATG-ATGA--CG-ACACAATGGTG--A-ACGTCA--AGAATCACT-TGCTG-TGATATTTA-AT-----TTACA---GACCGG-AAA-TAATT--AAAAAAAT-TATGTTTTTTTAATTCAATGTC-CA-GCTTGCCATCA-CA--CAGA-CA-CATTCGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTCAAAA-TTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGTTTGTCGT--GCAAAAATAAAGTGTAT-TTTCTCCTAAGTATTATC--T-AGTACTTATTT--CTTCAAA-TCAACAAAGAGTTCGCGA-AA---ACC--AC-TTTGACACACCTTCACA---T-CA-----AT-TAAA-ATTACGTCA-TTTTTT-TAATTAAAAAGCGATGAACGGATTACGT---CATATCATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAA-TG-ACGATACA-A-ACAATGATG--ATACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAATATA-TAATTTAAAAAAAAT-TATGTTTTTAT----CA-TGTCACATCTTTGC-ATCA-CA-GCA-AACA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATAT-CTGGTT-GTTGCCCGCAATATT----T-TAT-TTTTGGTAAAG--TTATCAAT-A-----TATTTGGCTTTCAAATCAACAA-GATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CA--T-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA--GGATGACGTTCCTATAT-GTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|5 : ATTATGTAGTAGGCCTTATCATTTT---------AAA-TG-ACGATACA-A-ACAATGATG--ATGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAATAA--TAATG--AAAAAGAT-TATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTTTTACAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAatagccaatacacgtcccttgt
gi|6 : TCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTCCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACTAGAGTAAGGT-GTGGTTTTACAATTTATTAATAGATCGAAATAG-TTGAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|7 : t-----TATTTGGCTTCAAA-TCAACA--GATTCCGCGA-A--CAACCCAAC-TTTGACGCAC--CAACAAAGC-CGTTT-AAT-AAAACATTACG------TCCTATATGTG-------------------------TATAT-G---------AAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|8 : ccTTCACTCATCTGATCTATA-AATGGCGGT-GGAACG-GGCTGGGAAGGGGG-GCT----T-AGCCTCCCTCCCCCCCCCC-TTTTTTTTTTT--TACAAAA-GATAGACAAAATATAGGCAA--TACTCTC-ATAATTCATTATTGTATTTATACTAGGCAACT-TTTGGCTGATTTGTCCCCCCatagccaataacgtccttt
gi|9 : atGAAATAG-TTGAGCCGTGTTTTTTATTTCTTAAAAGTGTGC-----------GAATGAGCGGGATATTAGTA--ACCCGG-ACCGATTATTT-AGATAAATATGTATTAGGCCTTATAATTTTTATC-AT-AAAA-T
blockSeqs : A . A C . CT G T AGGGTA C TCCCCCCCCCC GTT A . A T C . T ATTATTGTAT T C G TT T C C CCCTT T C . AT T . G AT AAATAAAACTCGA T AAAACTCGAG A T . C A . T T C G G T A . GT G T . . C TTT T T A . T . C . T TG AA A . AC A G TA AA TA AG A G AATT G T C . A G A CA ATATATAAA A C A A . C T A A TAT . TC AAT T C A AAAGTG . TT TAGTACT A AAA G A A T C . TTT A AC T GT A AAAAGCGATGAAC TT C A T G . GGCCTA C T . C . T A TGAA . T
blockSeqs : . . G . . . G . T G TT T . . A . . . . . . . . TG T C . CCCCC T C AT . . A T . G A . T T C . G T G . G G . . . . A C . . . T . . . . . . . . AC G T TA A . AA . T . A . . . . . . T . . . . . . . . A A TA . . AT . C A AT . TA AATA A AA . A A . T . T . AC . AT A GGATTA T . T . G . . . T . . . . A AT . .
blockSeqs : . T . . . . . . T C T . . . . . . C . . T . C . G . . . . C . . . T . . . . . . . . A G C TA A . AA . T . G . . . . . . T . . . . . . . . . . . . . A . . A T . . TCA . A . A A . C . T . AC . G G GGATA T . C . G . . . T . . . . A AT . .
blockSeqs : . . . . . . . . . . . . . . . A A . . AG . T . . . . . . . . T . . . . . . . . . A . . . . . . . . A . T T . T . T . . . . . . . . . . . AT . .
blockSeqs : . . . . . . . . . . . . . . . . . . AT . .
blockSeqs : . . . . .
blockSeqCons : C* ** TA AG T** ** A* T*** AC GT GGATG******** T* AT**** **
originalCons : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA--GGATTACGTTCCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
finalCons : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CAT--TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CAT---AAT-AAAACATTACGTCA-TTTCTTGTAGGTAGGATG--------GGATTACGT-CCTATAT-GTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAAAT----AAAA--AA-AATCTCGGCGGTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT
Alignments
lowQualScore : 1 1 1 1 11 1 222222 555555555555 111 1 1 11 1 5555555555 1 11111 222222 1 7777777777777 1 5555555555 1 1 11 1 1 1 11 11 1 1111 1 11 11 11 11 2 1111 111 222222222 11 111 1 11 222 1 222222 1 3333333333 1 111 1111 44444444444444 1 111111 1 1
lowQualScore : 3 0 1 0 0 33 2 00 0 888888 2 333333333333 777 0 0 3 77 6 3 7 8888888888 7 3 6 66 3 2 3 00000 7 6 999999 22 1 5 1 22 1111111111111 0 3 8888888888 7 7 3 1 3 0 3 33 2 0 2 3 2 0 11 2 3 88 3 6 2222 0 99 8 6 8 0 8 8 11 0 8 11 11 8 0 8 55 1 1 0 11 88 11 22 0 5 7777 0 3 8 8 8 8 8 8 000 0 666666666 6 6 8 8 0 11 8 8 0 3 3 000 0 33 777 0 2 3 0 111111 0 66 8888888888 0 0 999 8 88 5 8 3 0 8 9999 8 55 0 8 44 1 44444444444444 3 1 1 6 6 999999 6 5 6 6 6 5 2 888888 77 5
lowQualScore : . . . . . .. . .. . ...... . ............ ... . . . .. . . . .......... . . . .. . . . ..... . . ...... .. . . . .. ............. . . .......... . . . . . . . .. . . . . . . .. . . .. . . .... . .. . . . . . . .. . . .. .. . . . .. . . . .. .. .. .. . . .... . . . . . . . . ... . ......... . . . . . .. . . . . . ... . .. ... . . . . ...... . .. .......... . . ... . .. . . . . . .... . .. . . .. . .............. . . . . . ...... . . . . . . . ...... .. .
lowQualScore : 3 0 2 0 0 88 5 55 0 222222 5 222222222222 000 0 0 2 33 7 3 3 3333333333 3 3 7 22 2 5 7 77777 3 7 000000 00 0 5 0 00 0000000000000 7 3 3333333333 3 3 3 0 2 0 2 22 5 0 5 2 0 0 88 5 7 33 3 7 7777 8 44 0 7 0 6 0 0 00 8 0 00 00 0 8 0 88 4 0 8 66 88 00 22 4 6 0000 8 2 0 0 0 0 0 0 000 8 777777777 7 7 0 0 8 00 0 0 8 2 2 222 0 88 000 0 5 2 2 888888 0 88 0000000000 8 6 444 0 88 6 0 2 8 0 8888 0 88 8 0 00 4 44444444444444 3 0 8 7 7 222222 7 5 7 7 7 7 0 333333 99 7
consensus : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GATTA---GGATTACG-TCCTATATGTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
Reference ( family-725 ) : NNNNNNNNTAGGATAATTCACTTATTTT-TCTCTA-ATAGGCGTC-GGAACC-GG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT--TGC-AAA-GATAAACATAACATAGGCAA-TTACTCTT-TAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTACACGTATATGCTGTAAGTACTNNTNCAAACTAATATGACAAGTTTATAATATTCTTACAACGAACGGTGTAGCTCTAAGATNATNNTCTTTGACGAGATAGAA------CT---GCGA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTNCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATTTATTAATAGATCGGAATAG-TTGAGCCGTGTTTTTTATTTCTTCAAAGTGTGCGAAAATTACCAGAATGAGCGGGATACTAGTA--ACCCGG-ACCGACTATTTAAAATAATTATGTAGTAGGCCTTATCATTTTTATC-AT-AAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATGTNGCATACGACCAATAAA-TAATT--AAAAAGATATATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--T-A-----TATTTGGCTTCAAAATCAACAA-GATTCCGCGA-AA-CAACCCAAC-TTTGACGCACCTCCACGACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTGTAGGTAG-----GA-TG---GGATTACG-TCCTATATGTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|1 : TAGGATAATTCATTTATTTT-CCTCTACATAGGCGTC-GGAACCCGG--GGGGGGGGGG-GCT----T-AGCCGCCC----------CTTTTTTTTTTTT---GC-AAAAGATAAACATAACATAGGCAAATTACTCTTCTAAATTC----------TCAAATTAGA-AACTGTTTTGTTGGTTTAGCCCCCCTCCCCC---------GTTCAATT-GCTTC-GACGCCTATGCTCTACACGTATATGCTGTAAGTACTTATGCAAACTAATATGACAAGTTTATAATATTCTTACAACAAACGGTGTAGCTCTAAGATTATTATCTTTGACGAGATAG-A------TT---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACG-TCTGGA-TCAGTTTTCTCCAAATATAATTTGCCCTAATATTATACGATGATTAACGAATCTAATACACTAA--AAAACTTTTTAAATA-CAGAGTAAGTT-GT-GTTTTACGATTTATTAATA-ATCGGAATAGTTTGAGCCGTGTTTTTTATTTCTTCAAAATGTGCGAAAATTACCAGAATGAGCGGGATACTAGTACCACCCGGAACCGACTATTTAAACTAATTATGTAGTCAGCCTTATCATTTTTATTAAT-AAAA-TGAATGA-ACGAA-ACAATGATGACATACG-CA--AG--TCCCTCTGCTG-TGAGATTTGTATACATATGGCATACGACCAAT-AA-TAATT--AAAA----ATATG-TTTTTT----CAATGTCGCA-CTTTGC-ATCACCA-GCA-A-CAGT-TTCGTTTCCAGGGAAGATAAATTA---------TAACGCACAAATTCATGCTG-GAAAACTGTCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTTGCGC-AGCCAA-CAACC-ACACCATATTGATA-TTGAAGAAAGAATATCAAAGGGATAATCAAAC--CTGTAAAATATAT---CTGGTT-GTTGCCCGC-AAAGTA---T-TTTATTTTGCTAAAGTTTCATC--T-------TATTTGGCT--AAAATCAAC-A-GATTCCGCGA-AATCAACAC-AC-TTTGACGCACCTCCACGACGTACA--TAAAT-AAA--ATTACGTCA-TTTCTTGTAGGTAG-----GATTA---GGATTACGTTCCTATATGTGTATA-TGAAATAAAGTA------A-TTCAGC-TACTTA-TGAA-AAGTTGACAAAA--ATTCAGAACCCA-AATCTCGGCGGTAA
gi|10 : catgtaatTCCCCTAAT--TATATGATGATTAACG-ATGTGATACACTAATCAAAAC---TTAAATACCAAAGTAAGTTGGTGGTTTTACGATTTATTAATAatagccaataacgtccattg
gi|11 : TACG-TCCTATATGTATAAA-TGAAAC-AAGTAGGCCTAA-TTCAGCTTAT-TA-TG-A-AAGTTG-AAAAA--AT--GAAA--AA-AATCTTGGCGGTAA
gi|12 : -ATAGGCGTC-GGAATC-GG--GGGGGGGGGGTGCTAGGGTAAGCCCCCC----------C------TTTTTT--TGC-AAA-GATAAACATAATATAGGCAA-
gi|13 : TTTTGTTGGTTTAGCCCC---CCCCCCCCTTCCCCTTTCAATTTGCTTCCGACGCCTAT
gi|15 : -AAGTTGAAAAAATGAA--AAAA--AA-AATCTCGGCGGTAA
gi|16 : GATAAATTA---------TAGCGCATAAATTCATGCTG-GGAAACTGCCG-ATTatagccaataacgtccct
gi|2 : TAGGATAATTGTCTTATTTT-TCTCTA-ATGGGCGTCCGGAACC-GG--G-------------------AGTTGTTT----------TTTTTTTTTTTTTGTTGC-AAA-GATAA-CATAACATAGGCAA-TTA-TCTT-TAAAT-C----------TCAACT--GA-AACTGTT--GTTGGT--AGCCCCCCCCCCCCCCCCCCCCCGTTCAATTTGCTTCCGACGCCTATGCTCTA------TATGCTGTAAGTACTATTTCAAACTAATATGACAAGTTTATAATATTCTTACA-CGAACGGTGTAGCTCTAAGATGATATTCTTTGACGAGATAGA--------T---GCAA-AGGAAC----------CGCTAGCTGTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTGCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACCAGAGTAAGTT-GTGGTTTTACGATT-ATTAATAAATCGGAATAG-TTGAGCCGT--TTTTTATTTCTTCAAAATATGCGAAAATTACTAGAATGAGCGGGATACTAGTA--ACCCGG-AC-GACTA---AAAATAATTATGTAGTAGGCCTTATCATTTTTATT-ATTAAAA-TG-ACGATACG-A-ACAATGATG--ATACG-CA--AG--TCCCTCTGCTG-TGAGATTTG-ATACATATGGCATACGACCAATAAAATAATT--AAAAAGATAGATTGTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CAAGCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAAATTCATATTGTTT--GC-AGCCAA-CAACCAACACCATATTGATA-TTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATA--CTGGTT-GTTGCCCGCAAAAGTA---T-TAT-TTTTGCTAAAGTTTTATC--TCA-----TAGTTGGCTTCAAAATCAAC-A-GATTCCGCGA-AA-CAACCCAAC-TTTAACGCACCTCCACAACGT-CA--T-AAT-AAAACATTACGTCA-TTTCTTG-AAGTAG-----GATTA---GGATTACG-TCCTATATGTGTATA-TGAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTGAAAAAA--AT--AAAA--AA-AATCTCGGCGGTAA
gi|3 : atgtatgaTATTATGCTTTCTCATTTCTATC-AT-AAAAATG-ATGA--CG-ACACAATGGTG--A-ACGTCA--AGAATCACT-TGCTG-TGATATTTA-AT-----TTACA---GACCGG-AAA-TAATT--AAAAAAAT-TATGTTTTTTTAATTCAATGTC-CA-GCTTGCCATCA-CA--CAGA-CA-CATTCGTT-CCAGGGAG-ATAAATTAATATATAAATAACACACA---TCATACTGAGAAAACCGACGCATTTCCTTAATTCACACTTATTCAAAA-TTCATGT-GTTT--GCCAGCCAATCAACCAAC-CCATATTAA-------GGAAAGAATATTAAA-GGACAATTAAACTCCTGTAAAATATAAAATCTGGTTTGTCGT--GCAAAAATAAAGTGTAT-TTTCTCCTAAGTATTATC--T-AGTACTTATTT--CTTCAAA-TCAACAAAGAGTTCGCGA-AA---ACC--AC-TTTGACACACCTTCACA---T-CA-----AT-TAAA-ATTACGTCA-TTTTTT-TAATTAAAAAGCGA-TGAACGGATTACG-TCATAT-CATGTACA-T--AAT-AAGCA------ACTTCAGC-TAT-TACTG-A-AAGTTGAGAA--------CAAA--AA-AATCCC-GCGGTAA
gi|4 : atatattatgtatcttaaAAA-TG-ACGATACA-A-ACAATGATG--ATACG-TATGAG--TCCCTCTGCTGATGAG--TTG-ATA-ATGTCATATACGACCAATATA-TAATTTAAAAAAAAT-TATGTTTTTAT----CA-TGTCACATCTTTGC-ATCA-CA-GCA-AACA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTGCCG-ATTTCCGTA-TTCACACTTTTCCAAAA-TTCATATTGTTT--GC-A-CCAA-CAACCAACACC-TATTGATATTTGAAGAAAGAATATCAAA-GGATAATCAAAC--CTGTAAAATATATAT-CTGGTT-GTTGCCCGCAATATT----T-TAT-TTTTGGTAAAG--TTATCAAT-A-----TATTTGGCTTTCAAATCAACAA-GATTCCGCGAGAA-CATTCCAACTTTTGACGCACCT-CACGACGT-CA--T-AATAAAAACATTACGTCATTTTCTTGTAGGTAG-----GA-TA---GGATGACGTTCCTATATGTGTATATTGAAAT-AAGTA------A-TTCAGC-TAC-TA-TG-ATAAGTTG-AAAAA--AT--AAAA--AATAATCTCGGCAGTAAatagccaatacacccttg
gi|5 : ATTATGTAGTAGGCCTTATCATTTT---------AAA-TG-ACGATACA-A-ACAATGATG--ATGTG-CA--AG--TCCCTCTGCCG-TGAGATTTG-ATACATGTAGCATACGACCAATAA--TAATG--AAAAAGAT-TATGTTTTTTT----CAATGTCGCA-CTTTGC-ATCA-CA-GCA-A-CA-T-TTCGTTTCCAGGGAGGATAAATTA---------TAACGCACAAATTCATACTG-GAAAACTACCG-ATTTCCATA-TTCAAACTTTTACAAAA-TTCATATTGTTT--GC-AGCCAA-CAACCAatagccaatacacgtcccttgt
gi|6 : TCTTTGACGAGACAGAAATAAAACTCGAGCGATAGAAATAAAACTCGAGCGCTAGCTCTCTGTGACGATCTGGATTCAGTTTTCTCCAAATAT-ATTTCCCCTAATATTATACGATGATTAACG-ATCTAATACACTAATCAAAAC-TTTTAAATACTAGAGTAAGGT-GTGGTTTTACAATTTATTAATAGATCGAAATAG-TTGAGTCGTG-TTTTTATTTCTTCAAAGTGTGCGAAA
gi|7 : t-----TATTTGGCTTCAAA-TCAACA--GATTCCGCGA-A--CAACCCAAC-TTTGACGCAC--CAACAAAGC-CGTTT-AAT-AAAACATTACG------TCCTATATGTG--------------------------TATAT---------GAAAT-AAGTA------A-TTCAGCTTAC-TA-TG-A-AAGTTG-AAAAA--AT--CAAA--AA-AATCTCGGCGGTAA
gi|8 : ccTTCACTCATCTGATCTATA-AATGGCGGT-GGAACG-GGCTGGGAAGGGGG-GCT----T-AGCCTCCCTCCCCCCCCCC-TTTTTTTTTTT--TACAAAA-GATAGACAAAATATAGGCAA--TACTCTC-ATAATTCATTATTGTATTTATACTAGGCAACT-TTTGGCTGATTTGTCCCCCCatagccaataacgtccttt
gi|9 : atGAAATAG-TTGAGCCGTGTTTTTTATTTCTTAAAAGTGTGC-----------GAATGAGCGGGATATTAGTA--ACCCGG-ACCGATTATTT-AGATAAATATGTATTAGGCCTTATAATTTTTATC-AT-AAAA-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GGGCGGGGCTGGGGGATTGTCTGTCCCCCCCCCCCCTTTTTTTTTTTTTAGAAAA
Unaligned ( gi|17 ): TCGGCGGTAAATAGCCAATAACGTCCCTTATT