lowQualScore : 11111111111111 11111111 1111111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 00000000000000 2 1 00000000 22222 222222 22222 111 11 111 11 11 22222 1 1 1 1 1 9999999999999999999999999999999999999999999999999 11 2222 222222 2222 222222 7777777777777777777777 222 22222222 444444444444444444444444 1 1 1 3333 22222 1 1 222 22 11 11111 3333333 1 44444444444 11 444444444 1 2222222 888888888888888888888888888 1 44444444444
lowQualScore : 6 66666666666666 0 4 3 33333333 7 6 8 00000 8 000000 33333 444 11 8 888 22 33 0 55555 0 0 0 7 7 1 5 3 6 6 3333333333333333333333333333333333333333333333333 33 0000 9999 222222 7777 444444 4 0000000000000000000000 2 222 5 99999999 3 000000000000000000000000 8 8 8 5 6 0 0 0 5555 9 55555 3 6 3 222 8 00 33 55555 9 4 8 3 9 6 4444444 3 2 2 77777777777 11 000000000 3 7777777 3 999999999999999999999999999 7 4 2 9 22222222222 1 6
lowQualScore : . .............. . . . ........ . . . ..... . ...... ..... ... .. . ... .. .. . ..... . . . . . . . . . . ................................................. .. .... .... ...... .... ...... . ...................... . ... . ........ . ........................ . . . . . . . . .... . ..... . . . ... . .. .. ..... . . . . . . ....... . . . ........... .. ......... . ....... . ........................... . . . . ........... . .
lowQualScore : 0 00000000000000 0 7 3 77777777 0 0 0 00000 0 888888 00000 000 00 0 000 00 88 2 55555 0 0 0 0 3 0 0 3 0 7 4444444444444444444444444444444444444444444444444 88 8888 2222 222222 8888 888888 0 7777777777777777777777 2 333 0 00000000 0 888888888888888888888888 0 0 0 0 0 8 0 0 0000 0 00000 3 7 3 444 0 88 22 00000 6 8 0 0 6 0 0000000 8 8 8 88888888888 00 000000000 3 0000000 7 000000000000000000000000000 0 0 0 8 22222222222 2 0
consensus : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACGTG-TTACGCGAGTAC-------TTCGAGTTG-TAAAT-----AA-AACGTCCANTATTT--CATGACACT---AG--TG-TCG--TACGNGTGT--TACGCG----AGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCA-TG-TTCCAAGATGGCGGGGTAT----AG---------TGTGA------AA-AT-T---------A------TTT--TAT---CAGGAATATGTAGCG---T--CGAC-GG-AAAAAG-T-CTNAAAGTA--TN---A---CTNNTTCCCTTTGGTTATTTCT-C-TTTGGCTCNTTCGG--------GACCATGCAA-TTTCTCGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAATTGTGGAACTGTATC-ATCATAAATAT--TTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTAGATACAAACA------TGAATCGCAAAGTCA-TT-ATAT-C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--C-ACTATACAANACGAAAT-GT---------TTTA-TT-A-T-CTAAAGTTCAGTCACNGAGCATGCGCAAATTCAACTCTAGTGTCACG---GGGTTGGTTAAATCAAACGCAC
Reference ( gi|1 ) : GTTTATT-ATACAAAGAGT--GCGTTCGATTAAGCG-ACACATG-TTACACGAGTACAATGTAGCTAGAATTG-TAAAT-----AA-AACGTCCAGT-TTT--C--GACACT---AG--TG-TCG--CACGTGTGT--TACGCG----AGTA-TACTCCCCAGT-TT-AGCTGGAGTCACTAGTG-TTCCGAGATGGCGGGGTAT----AG---------TGTGA------AA-AT-T---------G------TTT--TAT---CAGGAACATGTAGCG---T--CGAC-G--AAATAG-T-CTTAAAATA--TC---A---CTATATCTATCTGATTATTTCT-T-TTTGGCTCGTTCGA--------GACCATGTAA-GTTTTCGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAACAAAAATGTT-TT-CTAA----AGTAAACTT-----CAGTAAAATGTGGAACTGTATC-ATCATAAATAG--TTTAAACA-GATGAGGCCGGAT--TCCCTAACGTCAATT-TAATTGGGTACAAAC-------TGAATCGCGAAGCCA-TTAAAAT-C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACCAA--C-ACTATACAACACGA----GT---------TTT---------CTAAAGATCAGTCACTGAGCATGCGCAAATCCAACTCTAGTGTCACAA--GGGTTGGTTAAATCAAACACACC
gi|5 : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACTTGATTACGCGAGGCTAA---AACTCGAGTTGATAAATTAACTAACAGCGTCCATT-CTTATC--GACACTCTGAGGATGGTCGACTACGTATGTATTACTCGTATGAGTAGTATTCCCCAGTGTT-AGCTGGAGTCACCAGTGCTTCCAAGAT-GCGAGGT
gi|12 : TCGATTAAGCG-ACACGTG-TTACACGAGTAC-------TTCGAGTTG-TAATT-----AA-AACGTCCATT-TTT--C--GACACT---AA--TG-TCG--CACTAGTGT--TACGCA----AGTA-TACTCCCCAGT-TT-tttaaacatcaaccccgtggaagtgtaacaatgtttttgcttttatttttggcatcaggaatgtattgcgccaagcggtaaaaatttaagtcgtaaaaaacgatcattaacttttctcccttgatgttattt
gi|2 : CACATG-TGACACGAGTAC-------TTAGAGTTG-TAAAT-----AA-AACGTCCAAT-TTT--C--GACACT---AG--TG-TCA--TACAAGTGT--TACGTC----AGTA-TGCTTCCCAGT-TTTAGCGAGAGTCACTATTG-TTCAAAGATGGCGGGGTAT----AAACACAACACTG----------A-AT-TTTTGCCTTTA------TTTGGTAT---CAGAAATATGTAACG---T--CGACAA--AAAAAG-T-CTAAAAATA--TCATGA---CTTTTTCCCTTTGGTTATTTCTAC-TCTGTCTCTTTAAA--------GACCATGCAA------------------TCC---TTGAAATGT-TTCTTTATTT-TAAAAAAATGTGTT-TT-CTAA----AGTAAATTT-----CAGTAAATTGTGGAACTGTATC-ATCACAAATAT--TTAAAACA-AAC-AGGACGAAT--TCCCTAACGTCAGTT-TGATTAGATACAAAA-------TGAACCG-GTAG-TA-TT---AT-CGTGTATTGTA--CTCAT---------GAACTTC
gi|8 : ttaaagGAGTTG-CAAAT-----AA-AACGC---GTATTT--CATGACACT---AG--TG-TTG--AACACGTGT--TGCACA----AGTT-TACTCCTGACT-TT-AGCGGGAG-CATCA-TG-TTTCAACATGGCGGAGAATAAAGAG---------T-TGACATATGAA-AT-TAAA------A------TTT--TG-----GGGAATATAAAGCAAACTTACCAC-G--AAAAAGATACATAAAGTT--TA---A---CTAAGTC-A-CTGATTTTTT
gi|16 : ag-TAAAT-----AA-AACGT---GTATTT--CATGACGCT---AG--TG-Tt
gi|10 : ----AG---------TGTGA------AGTATCT---------GCAGGAATTT--TATGTTCAAG----TGTAGCG---T--CGAC-GA-AAAAAG-T-CTAAAAATt
gi|7 : tataaacacaacacggg-AT-T----------------TTT--TAT---CAGAAATGTGTAGTG---T--CGAT-GGTAAA-AGCT-TTTAAAGTAATTT---ATGGCTCCTTCCCTTTGGTTATTTCT-TCTTTGACACCTTCGG--------GACCGTGCGA-TCTCTCAAACAA----TTCC---TTGAAATGT-TTCTTTA-CC-TAAAGAAAAGTAGT-TT-CTAAATTTAGTCAACTT-----ttggctcgttcgggaccatgtaatttctcgaaatgttgaaatgtttttttacttaaagaaattct
gi|3 : ataaaaacacaagacggtagtgtgaaattttattttgcttttTGGTAATTTCT-C-TTTGGCTCCTTCCAAAAATCATGACCATGCAC-TTTCTCGAACAA----TTCC---TTCAAATGT-TTATGAA-TT-TAACGAAAAGTGTT-TT-CTAA----AGTCAATTT-----CAGTAAATTATGGAACT---TT-ATCATATATAT--TTTAAACA-GATG-GGACGGAT-----CTAACAT-AGTT-TAATTCGATACAAAG-------TGAATCGCAAAGTCA------------TTAATATA--CTCAT---------TCTCTTCATATG-AGGa
gi|4 : -TTTGGCTCGTTCGG--------GACCATGCAATGTCTGAGAGCAAAATTCTCCTATTTGAAATGTGTTCTTTA-CTATAAAAAAAAGTGCTGTTACTAACG--GGTCAACTTACAAATAGTAGTGTGTGGAATTGTATCGATCATAAATGATTTTTCAACATAATGTGGGCGGATTCTCCCTAACGTTAGTTATGATTTGATACAAACA------TGAA-CACAAAGTCATTTTATGTGC-TTTAATATGTACTCAcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgcatatctaaacaactactctacaagacaaaggcgttttaatttaatgttaacgttcagtaaaagagcaagagcaaattcaactctagtgtcacgattaggctggttaaatcaaa
gi|10 : ttttac-TTTGGCTCGTTCGG--------GACCATGTAA-TTTCTCGA--AA----T--G---TTGAAATGT-TTTTTTA-CT-TAAAGAAAataaatttctattgtatgttggtcaatgtatatcacttgaacatttatagttgtcaaacagttttctttcctttcagtggtctacacactccgccatttaaa
gi|9 : tataaacacaacacgggagtgtgaagtatctgcaggaattttatgttcaagtgtagcgtcgacgaaaaaagtctaaaaaTCATAAATAT--TTCAAGCA-GATG-GGATGGAT--TCACTACCGTTAATT-GGATTAGATACAAACAGGAAACTGAATCGCAAAGTCA-TTAATAT-C-TTTAATATG--TCCATTTATCATGCTCACTTCATAGGATGGAttct
gi|6 : tataacttttagcactTAAAGAA--TTTAAACA-GATTAGAC-GGAT--TATCTTATGTTACTT-TGGTTAGATACAAAC-------TGAATCGCAAAGTCA-ATCATAT-C-TTTAATATG--CTCAT---------TCATTTCATATG-TGGaa
gi|3 : ctttactCATATCTAAAC-AA--CTACTCTACAAGACAAAGGCGT---------TTTAATTTAATGTTAACGTTCAGTAAAAGAGCAAGAGCAAATTCAACTCTAGTGTCACGATTAGGCTGGTTAAATCAAAtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgccaaattaaaacaaaccttatacaacacgaaatgttttatttaatttctaaaattcagtcacataggatgcgcaagtccaacggatagttaaatcaaacgcaa
gi|11 : tggtaatttctctttggctccttccaaaaatcatgaccatgcactttctcgaacaattccttcaaatgtttatgaatttaacgaaaagtgttttctaaagtcaatttcagtaaattatggaactttatcatatatattttaaacagatgggacggatctaacatagtttaattcgatacaaagtgaatcgcaaagtcattaatatactcattctcttcatatgaggcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgCATATTTAGACAAAAAC-ACTATACAATACGAGAT-GT---------TTTATTTAATTCCTAAAGTTCAGTCACTGTGCATGCGCAAATTCAACTCTAGTATAACAC--GGGTTGATTAAATCAAACGCA
gi|6 : cCAAATTAAAACAAA--C-CTTATACAACACGAAAT-GTTTTATTTAATTT---------CTAAAATTCAGTCACATAGGATGCGCAAGTCCAAC----------------GGATAGTTAAATCAAACGCAacca
gi|15 : ctttacttaaagaatttaaacagattagacggattatcttatgttactttggttagatacaaactgaatcgcaaagtcaatcatatctttaatatgctcattcatttcatatgtggtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgcACTGAACATGCGCAAATTCAACACTAG-GTCAT----GAGTTGGTTAAATCGAACGCACa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GTGTATTTCACGACGCTAGTATAAGTATATATATTGAACAAGTTTCCTCCTGAGTTTAGGGAGAA
Unaligned ( gi|14 ): TCATGACACTAGTGTTAAACAAGTTTAATATACTCCTGATTCTAAAAGGAGCATCAAGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 333 11 2 1 5555555555555 11111 1 22 111 1111 11111 1 222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111111111 111111 11111 5555555555555 111111111 111 22222222 1111 111 2222 22222 1 11 33333333 3333333333333 333333333 1 11 1111 7777777777777 11 44444
lowQualScore : 5 555 88 3 4 0 2 3 2222222222222 2 6 6 66666 6 1 5 5 00 888 66 5 5 000 1111 1 2 1 66666 5 0 5 5 1 1 0 000 8 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 888888888888 444444 6 1 6 66666 6 6 1 5555555555555 3 000000000 77 333 1 44444444 44 6 5 4444 111 6 6 6 8 8 8888 00000 3 2 0 99 6 44 99 1 6 1 55555555 1 0000000000000 99 222222222 0 33 1 8888 1111111111111 1 6 5 11 00000
lowQualScore : . ... .. . . . . . ............. . . . ..... . . . . .. ... .. . . ... .... . . . ..... . . . . . . . ... . ..................................................................................... ............ ...... . . . ..... . . . ............. . ......... .. ... . ........ .. . . .... ... . . . . . .... ..... . . . .. . .. .. . . . ........ . ............. .. ......... . .. . .... ............. . . . .. .....
lowQualScore : 0 000 55 7 2 0 0 2 2222222222222 5 7 7 77777 7 0 4 0 44 888 99 0 0 666 6666 7 3 7 11111 7 7 7 7 0 0 6 222 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777777777777 333333 7 0 7 77777 7 7 0 0000000000000 3 888888888 99 777 0 22222222 77 7 7 2222 777 7 7 7 0 0 0000 00000 5 5 0 22 7 22 22 0 7 8 77777777 7 0000000000000 22 000000000 0 88 0 5555 0000000000000 0 0 6 00 22222
consensus : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGT-G-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CGG-AAA-----AAG-T-CTTAAAAT---A-------TGACTNTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA--TTTAA-TTCCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC-----GGGTTGGTTAAATCAAACGCAC
Reference ( family-7125 ) : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACGTG-TTACGCGAGTAC-------T-----TCGAGTTG-TAAA-TAA-----AACGTCCANTATT-TCATGACACT---AG--T-GT-CG--TACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCA-T-G-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CGG-AAA-----AAG-T-CTNAAAGT---A-------TNACTNNTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAATTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTAGATACAAACA------TGAATCGCAAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAANACGAAA-TGTTTTA--TT--A-T--CTAAAGTTCAGTCACNGAGCATGCGCAAATTCAACTCTAGTGT--CAC-G---GGGTTGGTTAAATCAAACGCAC
gi|1 : GTTTATT-ATACAAAGAGT--GCGTTCGATTAAGCG-ACACATG-TTACACGAGTACAATGTAGC-----TAGAATTG-TAAA-TAA-----AACGTCCAGT-TT-TC--GACACT---AG--T-GT-CG--CACG--TGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCTGGAGTCACTAGT-G-TTCCGAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------GTTT--T----AT---CAGGAACATGTAGCG---T--CGA-C-G-AAA-----TAG-T-CTTAAAAT---A-------TCACTATATCTATCTG--ATTATTTCT-TTTTGGCTCGTTCGA--------GACCATGTAAGTTTT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAACAAAAATGTT-TT-CTAA----AGTAAACTT-----CAGTAAAATGTGGAACTGTATC-ATCATAAATA--GTTTAAACA-GATGAGGCCGGAT--TCCCTAACGTCAATT-TAATTGGGTACAAAC-------TGAATCGCGAAGCCA-TTAAAAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACCAA--CACTATACAACACGA----GTTT----------T--CTAAAGATCAGTCACTGAGCATGCGCAAATCCAACTCTAGTGT--CACAA---GGGTTGGTTAAATCAAACACAC
gi|10 : ------------AG---------TGTGA------AGT--------------A-----------TCTGCAGGA--ATTT--T----ATGTTCAAG----TGTAGCG---T--CGA-CGA-AAA-----AAG-T-CTAAAA----------------------------------ATTT-------GGCTCGTTCGG--------GACCATGTAATTTCT-CGA--AA----T--G---TTGAAATGT-TTTTTTA-CT-TAAAGAAAc
gi|11 : tataaacacaacacgggCATATTTAGACAAAAACACTATACAATACGAGA-TGTTTTA--TTTAA-TTCCTAAAGTTCAGTCACTGTGCATGCGCAAATTCAACTCTAGTATAACAC-----GGGTTGATTAAATCAAACGCAttct
gi|12 : cTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TCGAGTTG-TAAT-TAA-----AACGTCCATT-TT-TC--GACACT---AA--T-GT-CG--CACT--AGTGTTACGC----AAGTA-TACTCCCCAGT-TT-acca
gi|13 : TATT-TCACGACGCT---AG--T-ATAAG--TATA--TATATTGAAC----AAGTT-TCCTCCTGAGT-TT-A--GGGAG
gi|14 : gtg-TCATGACACT---AG--T-GT-TA--AACA--AGT-TT---------AATA-TACTCCTGATT-CT-AAAAGGAG-CATCA-A-G-Taa
gi|15 : ACTGAACATGCGCAAATTCAACACTAG-GT--CAT-----GAGTTGGTTAAATCGAACGCAC
gi|16 : -TAAA-TAA-----AACGT---GTATT-TCATGACGCT---AG--T-GT-gcta
gi|2 : CACATG-TGACACGAGTAC-------T-----TAGAGTTG-TAAA-TAA-----AACGTCCAAT-TT-TC--GACACT---AG--T-GT-CA--TACA--AGTGTTACGT----CAGTA-TGCTTCCCAGT-TTTAGCGAGAGTCACTA-TTG-TTCAAAGATGGCGGGGT-------AT------------AAACACAACACTG----------A---------------A-----------TTTTTGCCTTTATTTGGT----AT---CAGAAATATGTAACG---T--CGA-CAA-AAA-----AAG-T-CTAAAAATATCA-------TGACTTTTTCCCTTTG--GTTATTTCTACTCTGTCTCTTTAAA--------GACCATGCAA------------------TCC---TTGAAATGT-TTCTTTATTT-TAAAAAAATGTGTT-TT-CTAA----AGTAAATTT-----CAGTAAATTGTGGAACTGTATC-ATCACAAATA--TTTAAAACA-AAC-AGGACGAAT--TCCCTAACGTCAGTT-TGATTAGATACAAA-A------TGAACCG-GTAGT-A-T---TAT---CGTGTATTGTA--CTCAT---------GAACTTCt
gi|3 : ttaaagTG--GTAATTTCT-CTTTGGCTCCTTCCAAAAATCATGACCATGCACTTTCT-CGAACAA----TTCC---TTCAAATGT-TTATGAA-TT-TAACGAAAAGTGTT-TT-CTAA----AGTCAATTT-----CAGTAAATTATGGAACT---TT-ATCATATATA--TTTTAAACA-GATG-GGACGGAT-----CTAACA-TAGTT-TAATTCGATACAAA-G------TGAATCGCAAAGTCA--------------TTAATATA--CTCAT---------TCTCTTCATATG-AGG
gi|3 : CATATCTAAACAAC--TACTCTACAAGACAAAGGCGTTTTAATTT--AATG-TTAACGTTCAGTAAAAGAGCAAGAGCAAATTCAACTCTAGTGT--CAC-GATTAGGCTGGTTAAATCAAAcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgcatatctaaacaactactctacaagacaaaggcgttttaatttaatgttaacgttcagtaaaagagcaagagcaaattcaactctagtgtcacgattaggctggttaaatcaaa
gi|4 : tggtaatttctctttggctccttccaaaaatcatgaccatgcactttctcgaacaattccttcaaatgtttatgaatttaacgaaaagtgttttctaaagtcaatttcagtaaattatggaactttatcatatatattttaaacagatgggacggatctaacatagtttaattcgatacaaagtgaatcgcaaagtcattaatatactcattctcttcatatgaggcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgTTTTA-CTTTGGCTCGTTCGG--------GACCATGCAATGTCTGAGAGCAAAATTCTCCTATTTGAAATGTGTTCTTTA-CTATAAAAAAAAGTGCTGTTACTAACG--GGTCAACTTACAAATAGTAGTGTGTGGAATTGTATCGATCATAAATGATTTTTCAACATAATGTGGGCGGATTCTCCCTAACGTTAGTTATGATTTGATACAAACA------TGAA-CACAAAGTCA-TT-TTATGTGC-TTTAATATGTACTCA
gi|5 : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACTTGATTACGCGAG-GC-------TAAAACTCGAGTTGATAAATTAACTAACAGCGTCCATTCTTATC--GACACTCTGAGGATGGT-CGACTACGTATGTATTACTCGTATGAGTAGTATTCCCCAGTGTT-AGCTGGAGTCACCAGT-GCTTCCAAGAT-GCGAGGTTTTAAACATCAACCCCGTGGAAG---------TGTAA------CA---------------ATGTTTTTGCTTTT---------ATTT--TTGGCAT---CAGGAATGTATTGCG---C--CAAGCGGTAAAAATTTAAG-T-CGTAAAAA---ACGATCATTAACTTTTCTCCCTTGATGTTATTTataaatttctattgtatgttggtcaatgtatatcacttgaacatttatagttgtcaaacagttttctttcctttcagtggtctacacactccgccatttaaa
gi|6 : TAAAGA--ATTTAAACA-GATTAG-ACGGAT--TATCTTATGTTACTT-TGGTTAGATACAAAC-------TGAATCGCAAAGTCAATC-ATAT---C-TTTAATATG--CTCAT---------TCATTTCATATG-TGG
gi|6 : ctttactCAAATTAAAACAAA--CCTTATACAACACGAAA-TGTTTTA--TTTAA-TTTCTAAAATTCAGTCACATAGGATGCGCAAGTCCAAC-------------------GGATAGTTAAATCAAACGCAtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgccaaattaaaacaaaccttatacaacacgaaatgttttatttaatttctaaaattcagtcacataggatgcgcaagtccaacggatagttaaatcaaacgcaa
gi|7 : ctttacttaaagaatttaaacagattagacggattatcttatgttactttggttagatacaaactgaatcgcaaagtcaatcatatctttaatatgctcattcatttcatatgtggtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgcCAAGACGG--------------T------------AG---------TGTGA------AATTTTATTTTGCTTTTA-----------TT----------TTT--T----AT---CAGAAATGTGTAGTG---T--CGA-TGG-TAA-----AAGCT-TTTAAAGT---AATTTA--TGGCTCCTTCCCTTTG--GTTATTTCTTCTTTGACACCTTCGG--------GACCGTGCGATCTCT-CAAACAA----TTCC---TTGAAATGT-TTCTTTA-CC-TAAAGAAAAGTAGT-TT-CTAAATTTAGTCAACTT-----a
gi|8 : ataaaaacaGAGTTG-CAAA-TAA-----AACGC---GTATT-TCATGACACT---AG--T-GT-TG--AACA--CGTGTTGCAC----AAGTT-TACTCCTGACT-TT-AGCGGGAG-CATCA-T-G-TTTCAACATGGCGGAGA-------ATAAAG--------AG---------T-TGACATATGAA---------------A-----------TTAAA------ATTT--T----G-----GGGAATATAAAGCAAACTTACCA-CGA-AAA-----AGA-TACATAAAGT---T-------TAACTAAGTCAC--TG--ATTTTTTa
gi|9 : agTCATAAATA--TTTCAAGCA-GATG-GGATGGAT--TCACTACCGTTAATT-GGATTAGATACAAACAGGAAACTGAATCGCAAAGTCA-TTAATAT---C-TTTAATATG--TCCATTTATCATGCTCACTTCATAGGATGGAt
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 1 5555555555555 11111 1 22 1111 11111 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111111111 111111 11 11111 5555555555555555555 1 22222222 1111 111 2222 22222 1 11 33333333 3333333333333 333333333 1 11 2222 11 11 2222222
lowQualScore : 5 111 88 3 4 0 3 2222222222222 1 6 6 66666 6 5 5 00 888 66 5 5 888 1111 1 2 1 66666 5 0 5 5 1 1 0 8 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 888888888888 444444 6 33 66666 6 6 1111111111111111111 3 1 99 3 1 1 44444444 44 6 5 4444 111 6 6 6 8 8 8888 00000 1 2 0 99 6 44 99 1 6 1 55555555 1 0 0000000000000 99 222222222 0 33 0 2222 33 999 1 6 5 11 3333333
lowQualScore : . ... .. . . . . ............. . . . ..... . . . .. ... .. . . ... .... . . . ..... . . . . . . . . . ..................................................................................... ............ ...... . .. ..... . . ................... . . .. . . . ........ .. . . .... ... . . . . . .... ..... . . . .. . .. .. . . . ........ . . ............. .. ......... . .. . .... .. ... . . . .. .......
lowQualScore : 0 555 55 3 2 0 2 2222222222222 0 7 7 77777 7 4 0 44 888 99 0 0 999 6666 7 3 7 11111 7 7 7 7 0 0 6 8 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777777777777 333333 7 00 77777 7 7 3333333333333333333 8 0 22 3 0 0 22222222 77 7 7 2222 777 7 7 7 0 0 0000 00000 0 5 0 22 7 22 22 0 7 0 77777777 7 7 0000000000000 22 000000000 0 88 2 0000 22 888 4 0 6 00 0000000
consensus : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CGA-AAA-----AAG-T-CTTAAAAT---A-----TG-------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
Reference ( family-7125 ) : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CGG-AAA-----AAG-T-CTTAAAAT---A-----TG-------ACTNTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTCCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
gi|1 : GTTTATT-ATACAAAGAGT--GCGTTCGATTAAGCG-ACACATG-TTACACGAGTACAATGTAGC-----TAGAATTG-TAAA-TAA-----AACGTCCAGT-TT-TC--GACACT---AG--T-GT-CG--CACG--TGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCTGGAGTCACTAGTG-TTCCGAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------GTTT--T----AT---CAGGAACATGTAGCG---T--CGA-CG--AAA-----TAG-T-CTTAAAAT---A-----TC-------ACTATATCTATCTG--ATTATTTCT-TTTTGGCTCGTTCGA--------GACCATGTAAGTTTT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAACAAAAATGTT-TT-CTAA----AGTAAACTT-----CAGTAAAATGTGGAACTGTATC-ATCATAAATA--GTTTAAACA-GATGAGGCCGGAT--TCCCTAACGTCAATT-TAATTGGGTACAAAC-------TGAATCGCGAAGCCA-TTAAAAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACCAA--CACTATACAACACGA----GTTTT----------CTAAAGATCAGTCACTGAGCATGCGCAAATCCAACTCTAGTGT--CACAAG----GGTTGGTTAAATCAAACACAC
gi|10 : ------------AG---------TGTGA------AGT--------------A-----------TCTGCAGGA--ATTT--T----ATGTTCAAG----TGTAGCG---T--CGA-CGA-AAA-----AAG-T-CTAAAAA-----------------------------TTTG--G---------------CTCGTTCGG--------GACCATGTAATTTCT-CGA--AA----T--G---TTGAAATGT-TTTTTTA-CT-TAAAGAAAc
gi|11 : tataaacacaacacgggCATATTTAGACAAAAACACTATACAATACGAGA-TGTTTTA-TTTAATTCCTAAAGTTCAGTCACTGTGCATGCGCAAATTCAACTCTAGTATAACAC--G----GGTTGATTAAATCAAACGCAttct
gi|12 : cTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TCGAGTTG-TAAT-TAA-----AACGTCCATT-TT-TC--GACACT---AA--T-GT-CG--CACT--AGTGTTACGC----AAGTA-TACTCCCCAGT-TT-acca
gi|13 : GTATT-TCACGACGCT---AG--T-ATAAG--TATA--TATATTGAAC----AAGTT-TCCTCCTGAGT-TT-A--GGGAG
gi|14 : gt-TCATGACACT---AG--T-GT-TA--AACA--AGT-TT---------AATA-TACTCCTGATT-CT-AAAAGGAG-CATCAaa
gi|15 : ACTGAACATGCGCAAATTCAACACTAG-GT--CAT--G----AGTTGGTTAAATCGAACGCACagt
gi|16 : -TAAA-TAA-----AACGT---GTATT-TCATGACGCT---AG--T-GT-gcta
gi|2 : CACATG-TGACACGAGTAC-------T-----TAGAGTTG-TAAA-TAA-----AACGTCCAAT-TT-TC--GACACT---AG--T-GT-CA--TACA--AGTGTTACGT----CAGTA-TGCTTCCCAGT-TTTAGCGAGAGTCACTATTG-TTCAAAGATGGCGGGGT-------AT------------AAACACAACACTG----------A---------------A-----------TTTTTGCCTTTATTTGGT----AT---CAGAAATATGTAACG---T--CGA-CAA-AAA-----AAG-T-CTAAAAATATCA-----TG-------ACTTTTTCCCTTTG--GTTATTTCTACTCTGTCTCTTTAAA--------GACCATGCAA------------------TCC---TTGAAATGT-TTCTTTATTT-TAAAAAAATGTGTT-TT-CTAA----AGTAAATTT-----CAGTAAATTGTGGAACTGTATC-ATCACAAATA--TTTAAAACA-AAC-AGGACGAAT--TCCCTAACGTCAGTT-TGATTAGATACAAA-A------TGAACCG-GTAGT-A-T---TAT---CGTGTATTGTA--CTCAT---------GAACTTCt
gi|3 : ttaaagTG--GTAATTTCT-CTTTGGCTCCTTCCAAAAATCATGACCATGCACTTTCT-CGAACAA----TTCC---TTCAAATGT-TTATGAA-TT-TAACGAAAAGTGTT-TT-CTAA----AGTCAATTT-----CAGTAAATTATGGAACT---TT-ATCATATATA--TTTTAAACA-GATG-GGACGGAT-----CTAACA-TAGTT-TAATTCGATACAAA-G------TGAATCGCAAAGTCA--------------TTAATATA--CTCAT---------TCTCTTCATATG-AGG
gi|3 : CATATCTAAACAAC--TACTCTACAAGACAAAGGCGTTTTAATTTAATGT-TAACGTTCAGTAAAAGAGCAAGAGCAAATTCAACTCTAGTGT--CAC--GATTAGGCTGGTTAAATCAAAcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgcatatctaaacaactactctacaagacaaaggcgttttaatttaatgttaacgttcagtaaaagagcaagagcaaattcaactctagtgtcacgattaggctggttaaatcaaa
gi|4 : tggtaatttctctttggctccttccaaaaatcatgaccatgcactttctcgaacaattccttcaaatgtttatgaatttaacgaaaagtgttttctaaagtcaatttcagtaaattatggaactttatcatatatattttaaacagatgggacggatctaacatagtttaattcgatacaaagtgaatcgcaaagtcattaatatactcattctcttcatatgaggcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgTTTTA-CTTTGGCTCGTTCGG--------GACCATGCAATGTCTGAGAGCAAAATTCTCCTATTTGAAATGTGTTCTTTA-CTATAAAAAAAAGTGCTGTTACTAACG--GGTCAACTTACAAATAGTAGTGTGTGGAATTGTATCGATCATAAATGATTTTTCAACATAATGTGGGCGGATTCTCCCTAACGTTAGTTATGATTTGATACAAACA------TGAA-CACAAAGTCA-TT-TTATGTGC-TTTAATATGTACTCA
gi|5 : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACTTGATTACGCGAG-GC-------TAAAACTCGAGTTGATAAATTAACTAACAGCGTCCATTCTTATC--GACACTCTGAGGATGGT-CGACTACGTATGTATTACTCGTATGAGTAGTATTCCCCAGTGTT-AGCTGGAGTCACCAGTGCTTCCAAGAT-GCGAGGTTTTAAACATCAACCCCGTGGAAG---------TGTAA------CA---------------ATGTTTTTGCTTTT---------ATTT--TTGGCAT---CAGGAATGTATTGCG---C--CAAGCGGTAAAAATTTAAG-T-CGTAAAAA---A-----CGATCATTAACTTTTCTCCCTTGATGTTATTTataaatttctattgtatgttggtcaatgtatatcacttgaacatttatagttgtcaaacagttttctttcctttcagtggtctacacactccgccatttaaa
gi|6 : TAAAGA--ATTTAAACA-GATTAG-ACGGAT--TATCTTATGTTACTT-TGGTTAGATACAAAC-------TGAATCGCAAAGTCAATC-ATAT---C-TTTAATATG--CTCAT---------TCATTTCATATG-TGG
gi|6 : ctttactCAAATTAAAACAAA--CCTTATACAACACGAAA-TGTTTTA-TTTAATTTCTAAAATTCAGTCACATAGGATGCGCAAGTCCAAC--------------------GGATAGTTAAATCAAACGCAtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgccaaattaaaacaaaccttatacaacacgaaatgttttatttaatttctaaaattcagtcacataggatgcgcaagtccaacggatagttaaatcaaacgcaa
gi|7 : ctttacttaaagaatttaaacagattagacggattatcttatgttactttggttagatacaaactgaatcgcaaagtcaatcatatctttaatatgctcattcatttcatatgtggtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgcCAAGACGG--------------T------------AG---------TGTGA------AATTTTATTTTGCTTTTA-----------TT----------TTT--T----AT---CAGAAATGTGTAGTG---T--CGA-TGG-TAA-----AAGCT-TTTAAAGT---AATTTATG-------GCTCCTTCCCTTTG--GTTATTTCTTCTTTGACACCTTCGG--------GACCGTGCGATCTCT-CAAACAA----TTCC---TTGAAATGT-TTCTTTA-CC-TAAAGAAAAGTAGT-TT-CTAAATTTAGTCAACTT-----a
gi|8 : ataaaaacaGAGTTG-CAAA-TAA-----AACGC---GTATT-TCATGACACT---AG--T-GT-TG--AACA--CGTGTTGCAC----AAGTT-TACTCCTGACT-TT-AGCGGGAG-CATCA-TG-TTTCAACATGGCGGAGA-------ATAAAG--------AG---------T-TGACATATGAA---------------A-----------TTAAA------ATTT--T----G-----GGGAATATAAAGCAAACTTACCA-CGA-AAA-----AGA-TACATAAAGT---T-----TA-------ACTa
gi|9 : agTCATAAATA--TTTCAAGCA-GATG-GGATGGAT--TCACTACCGTTAATT-GGATTAGATACAAACAGGAAACTGAATCGCAAAGTCA-TTAATAT---C-TTTAATATG--TCCATTTATCATGCTCACTTCATAGGATGGAaagtcactgattttttt
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 1 5555555555555 11111 1 22 1111 11111 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111111111 111111 1111 5555555555555555555 1 22222222 1111 111 2222 22222 1 11 33333333 3333333333333 333333333 1 11 2222 1 11 2222222
lowQualScore : 5 111 88 3 4 0 3 2222222222222 1 6 6 66666 6 5 5 00 888 66 5 5 888 1111 1 2 1 66666 5 0 5 5 1 1 0 8 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 888888888888 444444 6 99 4444 1 6 6 1111111111111111111 4 1 99 3 1 1 44444444 44 6 5 4444 111 6 6 6 8 8 8888 00000 1 2 0 99 6 44 99 1 6 1 55555555 1 0 0000000000000 99 222222222 0 33 0 2222 3 0 2 1 6 5 11 3333333
lowQualScore : . ... .. . . . . ............. . . . ..... . . . .. ... .. . . ... .... . . . ..... . . . . . . . . . ..................................................................................... ............ ...... . .. .... . . . ................... . . .. . . . ........ .. . . .... ... . . . . . .... ..... . . . .. . .. .. . . . ........ . . ............. .. ......... . .. . .... . . . . . . .. .......
lowQualScore : 0 555 55 3 2 0 2 2222222222222 0 7 7 77777 7 4 0 44 888 99 0 0 999 6666 7 3 7 11111 7 7 7 7 0 0 6 8 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777777777777 333333 7 22 2222 7 7 7 3333333333333333333 0 0 22 3 0 0 22222222 77 7 7 2222 777 7 7 7 0 0 0000 00000 0 5 0 22 7 22 22 0 7 0 77777777 7 7 0000000000000 22 000000000 0 88 2 0000 2 0 5 4 0 6 00 0000000
consensus : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAAT---A-----TG-------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
Reference ( family-7125 ) : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAAT---A-----TG-------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
gi|1 : GTTTATT-ATACAAAGAGT--GCGTTCGATTAAGCG-ACACATG-TTACACGAGTACAATGTAGC-----TAGAATTG-TAAA-TAA-----AACGTCCAGT-TT-TC--GACACT---AG--T-GT-CG--CACG--TGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCTGGAGTCACTAGTG-TTCCGAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------GTTT--T----AT---CAGGAACATGTAGCG---T--CGA-CG--AAAT----A-G-T-CTTAAAAT---A-----TC-------ACTATATCTATCTG--ATTATTTCT-TTTTGGCTCGTTCGA--------GACCATGTAAGTTTT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAACAAAAATGTT-TT-CTAA----AGTAAACTT-----CAGTAAAATGTGGAACTGTATC-ATCATAAATA--GTTTAAACA-GATGAGGCCGGAT--TCCCTAACGTCAATT-TAATTGGGTACAAAC-------TGAATCGCGAAGCCA-TTAAAAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACCAA--CACTATACAACACGA----GT----------TTTCTAAAGATCAGTCACTGAGCATGCGCAAATCCAACTCTAGTGT--CACAAG----GGTTGGTTAAATCAAACACAC
gi|10 : ------------AG---------TGTGA------AGT--------------A-----------TCTGCAGGA--ATTT--T----ATGTTCAAG----TGTAGCG---T--CGA-CG--AAAA----AAG-T-CTAAAAA-----------------------------TTTG--G---------------CTCGTTCGG--------GACCATGTAATTTCT-CGA--AA----T--G---TTGAAATGT-TTTTTTA-CT-TAAAGAAAc
gi|11 : tataaacacaacacgggCATATTTAGACAAAAACACTATACAATACGAGA-TGTTTTA-TTTAATTCCTAAAGTTCAGTCACTGTGCATGCGCAAATTCAACTCTAGTATAACAC--G----GGTTGATTAAATCAAACGCAttct
gi|12 : cTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TCGAGTTG-TAAT-TAA-----AACGTCCATT-TT-TC--GACACT---AA--T-GT-CG--CACT--AGTGTTACGC----AAGTA-TACTCCCCAGT-TT-acca
gi|13 : GTATT-TCACGACGCT---AG--T-ATAAG--TATA--TATATTGAAC----AAGTT-TCCTCCTGAGT-TT-A--GGGAG
gi|14 : gt-TCATGACACT---AG--T-GT-TA--AACA--AGT-TT---------AATA-TACTCCTGATT-CT-AAAAGGAG-CATCAaa
gi|15 : ACTGAACATGCGCAAATTCAACACTAG-GT--CAT--G----AGTTGGTTAAATCGAACGCACagt
gi|16 : -TAAA-TAA-----AACGT---GTATT-TCATGACGCT---AG--T-GT-gcta
gi|2 : CACATG-TGACACGAGTAC-------T-----TAGAGTTG-TAAA-TAA-----AACGTCCAAT-TT-TC--GACACT---AG--T-GT-CA--TACA--AGTGTTACGT----CAGTA-TGCTTCCCAGT-TTTAGCGAGAGTCACTATTG-TTCAAAGATGGCGGGGT-------AT------------AAACACAACACTG----------A---------------A-----------TTTTTGCCTTTATTTGGT----AT---CAGAAATATGTAACG---T--CGA-CA--AAAA----AAG-T-CTAAAAATATCA-----TG-------ACTTTTTCCCTTTG--GTTATTTCTACTCTGTCTCTTTAAA--------GACCATGCAA------------------TCC---TTGAAATGT-TTCTTTATTT-TAAAAAAATGTGTT-TT-CTAA----AGTAAATTT-----CAGTAAATTGTGGAACTGTATC-ATCACAAATA--TTTAAAACA-AAC-AGGACGAAT--TCCCTAACGTCAGTT-TGATTAGATACAAA-A------TGAACCG-GTAGT-A-T---TAT---CGTGTATTGTA--CTCAT---------GAACTTCt
gi|3 : ttaaagTG--GTAATTTCT-CTTTGGCTCCTTCCAAAAATCATGACCATGCACTTTCT-CGAACAA----TTCC---TTCAAATGT-TTATGAA-TT-TAACGAAAAGTGTT-TT-CTAA----AGTCAATTT-----CAGTAAATTATGGAACT---TT-ATCATATATA--TTTTAAACA-GATG-GGACGGAT-----CTAACA-TAGTT-TAATTCGATACAAA-G------TGAATCGCAAAGTCA--------------TTAATATA--CTCAT---------TCTCTTCATATG-AGG
gi|3 : CATATCTAAACAAC--TACTCTACAAGACAAAGGCGTTTTAATTTAATGT-TAACGTTCAGTAAAAGAGCAAGAGCAAATTCAACTCTAGTGT--CAC--GATTAGGCTGGTTAAATCAAAcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgcatatctaaacaactactctacaagacaaaggcgttttaatttaatgttaacgttcagtaaaagagcaagagcaaattcaactctagtgtcacgattaggctggttaaatcaaa
gi|4 : tggtaatttctctttggctccttccaaaaatcatgaccatgcactttctcgaacaattccttcaaatgtttatgaatttaacgaaaagtgttttctaaagtcaatttcagtaaattatggaactttatcatatatattttaaacagatgggacggatctaacatagtttaattcgatacaaagtgaatcgcaaagtcattaatatactcattctcttcatatgaggcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgTTTTA-CTTTGGCTCGTTCGG--------GACCATGCAATGTCTGAGAGCAAAATTCTCCTATTTGAAATGTGTTCTTTA-CTATAAAAAAAAGTGCTGTTACTAACG--GGTCAACTTACAAATAGTAGTGTGTGGAATTGTATCGATCATAAATGATTTTTCAACATAATGTGGGCGGATTCTCCCTAACGTTAGTTATGATTTGATACAAACA------TGAA-CACAAAGTCA-TT-TTATGTGC-TTTAATATGTACTCA
gi|5 : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACTTGATTACGCGAG-GC-------TAAAACTCGAGTTGATAAATTAACTAACAGCGTCCATTCTTATC--GACACTCTGAGGATGGT-CGACTACGTATGTATTACTCGTATGAGTAGTATTCCCCAGTGTT-AGCTGGAGTCACCAGTGCTTCCAAGAT-GCGAGGTTTTAAACATCAACCCCGTGGAAG---------TGTAA------CA---------------ATGTTTTTGCTTTT---------ATTT--TTGGCAT---CAGGAATGTATTGCG---C--CAAGCGGTAAAAATTTAAG-T-CGTAAAAA---A-----CGATCATTAACTTTTCTCCCTTGATGTTATTTataaatttctattgtatgttggtcaatgtatatcacttgaacatttatagttgtcaaacagttttctttcctttcagtggtctacacactccgccatttaaa
gi|6 : TAAAGA--ATTTAAACA-GATTAG-ACGGAT--TATCTTATGTTACTT-TGGTTAGATACAAAC-------TGAATCGCAAAGTCAATC-ATAT---C-TTTAATATG--CTCAT---------TCATTTCATATG-TGG
gi|6 : ctttactCAAATTAAAACAAA--CCTTATACAACACGAAA-TGTTTTA-TTTAATTTCTAAAATTCAGTCACATAGGATGCGCAAGTCCAAC--------------------GGATAGTTAAATCAAACGCAtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgccaaattaaaacaaaccttatacaacacgaaatgttttatttaatttctaaaattcagtcacataggatgcgcaagtccaacggatagttaaatcaaacgcaa
gi|7 : ctttacttaaagaatttaaacagattagacggattatcttatgttactttggttagatacaaactgaatcgcaaagtcaatcatatctttaatatgctcattcatttcatatgtggtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgcCAAGACGG--------------T------------AG---------TGTGA------AATTTTATTTTGCTTTTA-----------TT----------TTT--T----AT---CAGAAATGTGTAGTG---T--CGA-TG--GTAA----AAGCT-TTTAAAGT---AATTTATG-------GCTCCTTCCCTTTG--GTTATTTCTTCTTTGACACCTTCGG--------GACCGTGCGATCTCT-CAAACAA----TTCC---TTGAAATGT-TTCTTTA-CC-TAAAGAAAAGTAGT-TT-CTAAATTTAGTCAACTT-----a
gi|8 : ataaaaacaGAGTTG-CAAA-TAA-----AACGC---GTATT-TCATGACACT---AG--T-GT-TG--AACA--CGTGTTGCAC----AAGTT-TACTCCTGACT-TT-AGCGGGAG-CATCA-TG-TTTCAACATGGCGGAGA-------ATAAAG--------AG---------T-TGACATATGAA---------------A-----------TTAAA------ATTT--T----G-----GGGAATATAAAGCAAACTTACCA-CG--AAAA----AGA-TACATAAAGT---T-----TA-------ACTa
gi|9 : agTCATAAATA--TTTCAAGCA-GATG-GGATGGAT--TCACTACCGTTAATT-GGATTAGATACAAACAGGAAACTGAATCGCAAAGTCA-TTAATAT---C-TTTAATATG--TCCATTTATCATGCTCACTTCATAGGATGGAaagtcactgattttttt
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 1 5555555555555 11111 1 22 1111 11111 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111111111 111111 1111 5555555555555555555 1 22222222 1111 111 2222 22222 1 11 33333333 3333333333333 333333333 1 11 2222 1 11 2222222
lowQualScore : 5 111 88 3 4 0 3 2222222222222 1 6 6 66666 6 5 5 00 888 66 5 5 888 1111 1 2 1 66666 5 0 5 5 1 1 0 8 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 888888888888 444444 6 99 4444 1 6 6 1111111111111111111 4 1 99 3 1 1 44444444 44 6 5 4444 111 6 6 6 8 8 8888 00000 1 2 0 99 6 44 99 1 6 1 55555555 1 0 0000000000000 99 222222222 0 33 0 2222 3 0 2 1 6 5 11 3333333
lowQualScore : . ... .. . . . . ............. . . . ..... . . . .. ... .. . . ... .... . . . ..... . . . . . . . . . ..................................................................................... ............ ...... . .. .... . . . ................... . . .. . . . ........ .. . . .... ... . . . . . .... ..... . . . .. . .. .. . . . ........ . . ............. .. ......... . .. . .... . . . . . . .. .......
lowQualScore : 0 555 55 3 2 0 2 2222222222222 0 7 7 77777 7 4 0 44 888 99 0 0 999 6666 7 3 7 11111 7 7 7 7 0 0 6 8 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777777777777 333333 7 22 2222 7 7 7 3333333333333333333 0 0 22 3 0 0 22222222 77 7 7 2222 777 7 7 7 0 0 0000 00000 0 5 0 22 7 22 22 0 7 0 77777777 7 7 0000000000000 22 000000000 0 88 2 0000 2 0 5 4 0 6 00 0000000
consensus : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAAT---A-----TG-------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
Reference ( family-7125 ) : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAAT---A-----TG-------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
gi|1 : GTTTATT-ATACAAAGAGT--GCGTTCGATTAAGCG-ACACATG-TTACACGAGTACAATGTAGC-----TAGAATTG-TAAA-TAA-----AACGTCCAGT-TT-TC--GACACT---AG--T-GT-CG--CACG--TGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCTGGAGTCACTAGTG-TTCCGAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------GTTT--T----AT---CAGGAACATGTAGCG---T--CGA-CG--AAAT----A-G-T-CTTAAAAT---A-----TC-------ACTATATCTATCTG--ATTATTTCT-TTTTGGCTCGTTCGA--------GACCATGTAAGTTTT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAACAAAAATGTT-TT-CTAA----AGTAAACTT-----CAGTAAAATGTGGAACTGTATC-ATCATAAATA--GTTTAAACA-GATGAGGCCGGAT--TCCCTAACGTCAATT-TAATTGGGTACAAAC-------TGAATCGCGAAGCCA-TTAAAAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACCAA--CACTATACAACACGA----GT----------TTTCTAAAGATCAGTCACTGAGCATGCGCAAATCCAACTCTAGTGT--CACAAG----GGTTGGTTAAATCAAACACAC
gi|10 : ------------AG---------TGTGA------AGT--------------A-----------TCTGCAGGA--ATTT--T----ATGTTCAAG----TGTAGCG---T--CGA-CG--AAAA----AAG-T-CTAAAAA-----------------------------TTTG--G---------------CTCGTTCGG--------GACCATGTAATTTCT-CGA--AA----T--G---TTGAAATGT-TTTTTTA-CT-TAAAGAAAc
gi|11 : tataaacacaacacgggCATATTTAGACAAAAACACTATACAATACGAGA-TGTTTTA-TTTAATTCCTAAAGTTCAGTCACTGTGCATGCGCAAATTCAACTCTAGTATAACAC--G----GGTTGATTAAATCAAACGCAttct
gi|12 : cTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TCGAGTTG-TAAT-TAA-----AACGTCCATT-TT-TC--GACACT---AA--T-GT-CG--CACT--AGTGTTACGC----AAGTA-TACTCCCCAGT-TT-acca
gi|13 : GTATT-TCACGACGCT---AG--T-ATAAG--TATA--TATATTGAAC----AAGTT-TCCTCCTGAGT-TT-A--GGGAG
gi|14 : gt-TCATGACACT---AG--T-GT-TA--AACA--AGT-TT---------AATA-TACTCCTGATT-CT-AAAAGGAG-CATCAaa
gi|15 : ACTGAACATGCGCAAATTCAACACTAG-GT--CAT--G----AGTTGGTTAAATCGAACGCACagt
gi|16 : -TAAA-TAA-----AACGT---GTATT-TCATGACGCT---AG--T-GT-gcta
gi|2 : CACATG-TGACACGAGTAC-------T-----TAGAGTTG-TAAA-TAA-----AACGTCCAAT-TT-TC--GACACT---AG--T-GT-CA--TACA--AGTGTTACGT----CAGTA-TGCTTCCCAGT-TTTAGCGAGAGTCACTATTG-TTCAAAGATGGCGGGGT-------AT------------AAACACAACACTG----------A---------------A-----------TTTTTGCCTTTATTTGGT----AT---CAGAAATATGTAACG---T--CGA-CA--AAAA----AAG-T-CTAAAAATATCA-----TG-------ACTTTTTCCCTTTG--GTTATTTCTACTCTGTCTCTTTAAA--------GACCATGCAA------------------TCC---TTGAAATGT-TTCTTTATTT-TAAAAAAATGTGTT-TT-CTAA----AGTAAATTT-----CAGTAAATTGTGGAACTGTATC-ATCACAAATA--TTTAAAACA-AAC-AGGACGAAT--TCCCTAACGTCAGTT-TGATTAGATACAAA-A------TGAACCG-GTAGT-A-T---TAT---CGTGTATTGTA--CTCAT---------GAACTTCt
gi|3 : ttaaagTG--GTAATTTCT-CTTTGGCTCCTTCCAAAAATCATGACCATGCACTTTCT-CGAACAA----TTCC---TTCAAATGT-TTATGAA-TT-TAACGAAAAGTGTT-TT-CTAA----AGTCAATTT-----CAGTAAATTATGGAACT---TT-ATCATATATA--TTTTAAACA-GATG-GGACGGAT-----CTAACA-TAGTT-TAATTCGATACAAA-G------TGAATCGCAAAGTCA--------------TTAATATA--CTCAT---------TCTCTTCATATG-AGG
gi|3 : CATATCTAAACAAC--TACTCTACAAGACAAAGGCGTTTTAATTTAATGT-TAACGTTCAGTAAAAGAGCAAGAGCAAATTCAACTCTAGTGT--CAC--GATTAGGCTGGTTAAATCAAAcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgcatatctaaacaactactctacaagacaaaggcgttttaatttaatgttaacgttcagtaaaagagcaagagcaaattcaactctagtgtcacgattaggctggttaaatcaaa
gi|4 : tggtaatttctctttggctccttccaaaaatcatgaccatgcactttctcgaacaattccttcaaatgtttatgaatttaacgaaaagtgttttctaaagtcaatttcagtaaattatggaactttatcatatatattttaaacagatgggacggatctaacatagtttaattcgatacaaagtgaatcgcaaagtcattaatatactcattctcttcatatgaggcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgTTTTA-CTTTGGCTCGTTCGG--------GACCATGCAATGTCTGAGAGCAAAATTCTCCTATTTGAAATGTGTTCTTTA-CTATAAAAAAAAGTGCTGTTACTAACG--GGTCAACTTACAAATAGTAGTGTGTGGAATTGTATCGATCATAAATGATTTTTCAACATAATGTGGGCGGATTCTCCCTAACGTTAGTTATGATTTGATACAAACA------TGAA-CACAAAGTCA-TT-TTATGTGC-TTTAATATGTACTCA
gi|5 : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACTTGATTACGCGAG-GC-------TAAAACTCGAGTTGATAAATTAACTAACAGCGTCCATTCTTATC--GACACTCTGAGGATGGT-CGACTACGTATGTATTACTCGTATGAGTAGTATTCCCCAGTGTT-AGCTGGAGTCACCAGTGCTTCCAAGAT-GCGAGGTTTTAAACATCAACCCCGTGGAAG---------TGTAA------CA---------------ATGTTTTTGCTTTT---------ATTT--TTGGCAT---CAGGAATGTATTGCG---C--CAAGCGGTAAAAATTTAAG-T-CGTAAAAA---A-----CGATCATTAACTTTTCTCCCTTGATGTTATTTataaatttctattgtatgttggtcaatgtatatcacttgaacatttatagttgtcaaacagttttctttcctttcagtggtctacacactccgccatttaaa
gi|6 : TAAAGA--ATTTAAACA-GATTAG-ACGGAT--TATCTTATGTTACTT-TGGTTAGATACAAAC-------TGAATCGCAAAGTCAATC-ATAT---C-TTTAATATG--CTCAT---------TCATTTCATATG-TGG
gi|6 : ctttactCAAATTAAAACAAA--CCTTATACAACACGAAA-TGTTTTA-TTTAATTTCTAAAATTCAGTCACATAGGATGCGCAAGTCCAAC--------------------GGATAGTTAAATCAAACGCAtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgccaaattaaaacaaaccttatacaacacgaaatgttttatttaatttctaaaattcagtcacataggatgcgcaagtccaacggatagttaaatcaaacgcaa
gi|7 : ctttacttaaagaatttaaacagattagacggattatcttatgttactttggttagatacaaactgaatcgcaaagtcaatcatatctttaatatgctcattcatttcatatgtggtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgcCAAGACGG--------------T------------AG---------TGTGA------AATTTTATTTTGCTTTTA-----------TT----------TTT--T----AT---CAGAAATGTGTAGTG---T--CGA-TG--GTAA----AAGCT-TTTAAAGT---AATTTATG-------GCTCCTTCCCTTTG--GTTATTTCTTCTTTGACACCTTCGG--------GACCGTGCGATCTCT-CAAACAA----TTCC---TTGAAATGT-TTCTTTA-CC-TAAAGAAAAGTAGT-TT-CTAAATTTAGTCAACTT-----a
gi|8 : ataaaaacaGAGTTG-CAAA-TAA-----AACGC---GTATT-TCATGACACT---AG--T-GT-TG--AACA--CGTGTTGCAC----AAGTT-TACTCCTGACT-TT-AGCGGGAG-CATCA-TG-TTTCAACATGGCGGAGA-------ATAAAG--------AG---------T-TGACATATGAA---------------A-----------TTAAA------ATTT--T----G-----GGGAATATAAAGCAAACTTACCA-CG--AAAA----AGA-TACATAAAGT---T-----TA-------ACTa
gi|9 : agTCATAAATA--TTTCAAGCA-GATG-GGATGGAT--TCACTACCGTTAATT-GGATTAGATACAAACAGGAAACTGAATCGCAAAGTCA-TTAATAT---C-TTTAATATG--TCCATTTATCATGCTCACTTCATAGGATGGAaagtcactgattttttt
blockSeqs : C . TT T G A T TAAAAC C A T CTAAC C A A AC CTG GA G A ACT GTAT G A G GTATG G G T A G T T C TTTTAAACATCAACCCCGTGGAAGTGTAACAATGTTTTTGCTTTTA TTGGCAT AACTTA G GT ATTT A C A AACGATCATTA T T AT A T G AAAATCAT TT G A AATT TAT G T A G A ATTT ACAAA T G G AT T GT TC C A A CAGGAAAC C TTTTATGTGC TA TTATCATGC A AA AGGC T A C T T T AA GATTA
blockSeqs : . A . T T A . . . C A . AT . . . . C TA A G A A . . . G A T G . TATAAACACAACACTGAATTTTTGCCTTTA TATGTT T . . . A . . TAATTTATG T T . T G T . TT . G . . . . . . . CG . T G . . . TA . C . C CA T ATCATATC . . . . GAT T . C T A T . G
blockSeqs : T . . T C . . . C C . AT . . . . T AT G A G A . . . G G . . . TAGTGTGAAATTTTATTTTGCTTTTATT GGTAT T . . . A . . TATCATG C T . . G C . TG . A . . . . . . . . . G . . . . A . T . T A T TTAATATC . . . . AAT T . . A T . . G
blockSeqs : . . . . A . AT . . . . A AA A A T C . . . G T . AATAAAGAGTTGACATATGAAATTAAAA TAT C . . . A . . TTTA . . . . A G . TC . . . . . . . . . . . . . G . A . A G T TTATCG . . A . . . .
blockSeqs : . . . . . . . . . . . T AA G G A A . . . . G TG T . . . G . . . . . . C . . . . . . . . . . . G . . . A C . . .
blockSeqs : . . . . . . . A AC . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : AT TAT********* TATCATA************ G* G******
originalCons : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAAT---A-----TG-------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATGAGGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
finalCons : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTTTAT---------CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAATATCATA------------ACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATG-GGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTCA-TT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CACG------GGTTGGTTAAATCAAACGCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 11 1 1 5555555555555 11111 1 22 1111 11111 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111111111 111111 111 1111 3333333333333 1 22222222 1111 111 2222 22222 1 1 33333333 22222222222 333333333 1 11 2222 1 11 2222222
lowQualScore : 5 111 88 3 4 0 3 2222222222222 1 6 6 66666 6 5 5 00 888 66 5 5 888 1111 1 2 1 66666 5 0 5 5 1 1 0 8 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 888888888888 444444 6 000 4444 6 6 6666666666666 4 1 99 3 1 1 44444444 44 6 5 4444 111 6 6 6 8 8 8888 00000 1 2 0 99 6 3 99 1 6 1 55555555 1 0 6 44444444444 99 222222222 0 33 0 2222 3 0 2 1 6 5 11 3333333
lowQualScore : . ... .. . . . . ............. . . . ..... . . . .. ... .. . . ... .... . . . ..... . . . . . . . . . ..................................................................................... ............ ...... . ... .... . . ............. . . .. . . . ........ .. . . .... ... . . . . . .... ..... . . . .. . . .. . . . ........ . . . ........... .. ......... . .. . .... . . . . . . .. .......
lowQualScore : 0 555 55 3 2 0 2 2222222222222 0 7 7 77777 7 4 0 44 888 99 0 0 999 6666 7 3 7 11111 7 7 7 7 0 0 6 8 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777777777777 333333 7 888 2222 7 7 4444444444444 0 0 22 3 0 0 22222222 77 7 7 2222 777 7 7 7 0 0 0000 00000 0 5 0 22 7 3 22 0 7 0 77777777 7 7 7 22222222222 22 000000000 0 88 2 0000 2 0 5 4 0 6 00 0000000
consensus : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAA---TA--TCA-TGACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATG-GGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTC-ATT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
Reference ( family-7125 ) : GTTTACTCATACAAAGAGTTTGCGTTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TNGAGTTG-TAAA-TAA-----AACGTCCAGTATT-TCATGACACT---AG--T-GT-CG--NACG--NGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCGGGAGTCACCAGTG-TTCCAAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------ATTT--T----AT---CAGGAATATGTAGCG---T--CGA-CG--AAAA----AAG-T-CTTAAAA---TA--TCA-TAACTTTTTCCCTTTG--GTTATTTCT-CTTTGGCTCNTTCGG--------GACCATGCAATTTCT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAAGAAAAGTGTT-TT-CTAA----AGTCAACTT-----CAGTAAANTGTGGAACTGTATC-ATCATAAATA--TTTTAAACA-GATG-GGACGGAT--TCCCTAACGTTAGTT-TGATTNGATACAAACA------TGAATCGCGAAGTC-ATT-ATAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACAAA--CACTATACAACACGAAA-CGTTTTA-TTTAATTTCTAAAGTTCAGTCACTGAGCATGCGCAAATTCAACTCTAGTGT--CAC--G----GGTTGGTTAAATCAAACGCAC
gi|1 : GTTTATT-ATACAAAGAGT--GCGTTCGATTAAGCG-ACACATG-TTACACGAGTACAATGTAGC-----TAGAATTG-TAAA-TAA-----AACGTCCAGT-TT-TC--GACACT---AG--T-GT-CG--CACG--TGTGTTACGC----GAGTA-TACTCCCCAGT-TT-AGCTGGAGTCACTAGTG-TTCCGAGATGGCGGGGT-------AT------------AG---------TGTGA------AA---------------A-----------TT---------GTTT--T----AT---CAGGAACATGTAGCG---T--CGA-CG---AAA----TAG-T-CTTAAAA---TA--TC----ACTATATCTATCTG--ATTATTTCT-TTTTGGCTCGTTCGA--------GACCATGTAAGTTTT-CGAACAA----TTCC---TTGAAATGT-TTCTTTA-CT-TAAACAAAAATGTT-TT-CTAA----AGTAAACTT-----CAGTAAAATGTGGAACTGTATC-ATCATAAATA--GTTTAAACA-GATGAGGCCGGAT--TCCCTAACGTCAATT-TAATTGGGTACAAAC-------TGAATCGCGAAGCC-ATTAAAAT---C-TTTAATATG--CTCAT---------TCACTTCATATG-TGGACATATTTAAACCAA--CACTATACAACACGA----GT----------TTTCTAAAGATCAGTCACTGAGCATGCGCAAATCCAACTCTAGTGT--CACAAG----GGTTGGTTAAATCAAACACAC
gi|10 : ------------AG---------TGTGA------AGT--------------A-----------TCTGCAGGA--ATTT--T----ATGTTCAAG----TGTAGCG---T--CGA-CG--AAAA----AAG-T-CTAAAAA-----------------------TTTG--G------CT-C--------GTTCGG--------GACCATGTAATTTCT-CGA--AA----T--G---TTGAAATGT-TTTTTTA-CT-TAAAGAAAc
gi|11 : tataaacacaacacgggCATATTTAGACAAAAACACTATACAATACGAGA-TGTTTTA-TTTAATTCCTAAAGTTCAGTCACTGTGCATGCGCAAATTCAACTCTAGTATAACAC--G----GGTTGATTAAATCAAACGCAttct
gi|12 : cTCGATTAAGCG-ACACGTG-TTACACGAGTAC-------T-----TCGAGTTG-TAAT-TAA-----AACGTCCATT-TT-TC--GACACT---AA--T-GT-CG--CACT--AGTGTTACGC----AAGTA-TACTCCCCAGT-TT-acca
gi|13 : GTATT-TCACGACGCT---AG--T-ATAAG--TATA--TATATTGAAC----AAGTT-TCCTCCTGAGT-TT-A--GGGAG
gi|14 : gt-TCATGACACT---AG--T-GT-TA--AACA--AGT-TT---------AATA-TACTCCTGATT-CT-AAAAGGAG-CATCAaa
gi|15 : ACTGAACATGCGCAAATTCAACACTAG-GT--CAT--G----AGTTGGTTAAATCGAACGCACagt
gi|16 : -TAAA-TAA-----AACGT---GTATT-TCATGACGCT---AG--T-GT-gcta
gi|2 : CACATG-TGACACGAGTAC-------T-----TAGAGTTG-TAAA-TAA-----AACGTCCAAT-TT-TC--GACACT---AG--T-GT-CA--TACA--AGTGTTACGT----CAGTA-TGCTTCCCAGT-TTTAGCGAGAGTCACTATTG-TTCAAAGATGGCGGGGT-------AT------------AAACACAACACTG----------A---------------A-----------TTTTTGCCTTTATTTGGT----AT---CAGAAATATGTAACG---T--CGA-CA--AAAA----AAG-T-CTAAAAA---TA--TCA-TGACTTTTTCCCTTTG--GTTATTTCTACTCTGTCTCTTTAAA--------GACCATGCAA------------------TCC---TTGAAATGT-TTCTTTATTT-TAAAAAAATGTGTT-TT-CTAA----AGTAAATTT-----CAGTAAATTGTGGAACTGTATC-ATCACAAATA--TTTAAAACA-AACA-GGACGAAT--TCCCTAACGTCAGTT-TGATTAGATACAAA-A------TGAACCG-GTAGT--AT---TAT---CGTGTATTGTA--CTCAT---------GAACTTCt
gi|3 : ttaaagTG--GTAATTTCT-CTTTGGCTCCTTCCAAAAATCATGACCATGCACTTTCT-CGAACAA----TTCC---TTCAAATGT-TTATGAA-TT-TAACGAAAAGTGTT-TT-CTAA----AGTCAATTT-----CAGTAAATTATGGAACT---TT-ATCATATATA--TTTTAAACA-GATG-GGACGGAT-----CTAACA-TAGTT-TAATTCGATACAAA-G------TGAATCGCAAAGTC-A-------------TTAATATA--CTCAT---------TCTCTTCATATG-AGG
gi|3 : CATATCTAAACAAC--TACTCTACAAGACAAAGGCGTTTTAATTTAATGT-TAACGTTCAGTAAAAGAGCAAGAGCAAATTCAACTCTAGTGT--CAC--GATTAGGCTGGTTAAATCAAAcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgcatatctaaacaactactctacaagacaaaggcgttttaatttaatgttaacgttcagtaaaagagcaagagcaaattcaactctagtgtcacgattaggctggttaaatcaaa
gi|4 : tggtaatttctctttggctccttccaaaaatcatgaccatgcactttctcgaacaattccttcaaatgtttatgaatttaacgaaaagtgttttctaaagtcaatttcagtaaattatggaactttatcatatatattttaaacagatgggacggatctaacatagtttaattcgatacaaagtgaatcgcaaagtcattaatatactcattctcttcatatgaggcaagttcgttgaacattcaaattgtcaaaagcgctttttcttgcgtcacacccgTTTTA-CTTTGGCTCGTTCGG--------GACCATGCAATGTCTGAGAGCAAAATTCTCCTATTTGAAATGTGTTCTTTA-CTATAAAAAAAAGTGCTGTTACTAACG--GGTCAACTTACAAATAGTAGTGTGTGGAATTGTATCGATCATAAATGATTTTTCAACATAATGTGGGCGGATTCTCCCTAACGTTAGTTATGATTTGATACAAACA------TGAA-CACAAAGTC-ATT-TTATGTGC-TTTAATATGTACTCA
gi|5 : GTTTACTCATAT---GAGTTTGCGTTCGATTAAGCGTACACTTGATTACGCGAG-GC-------TAAAACTCGAGTTGATAAATTAACTAACAGCGTCCATTCTTATC--GACACTCTGAGGATGGT-CGACTACGTATGTATTACTCGTATGAGTAGTATTCCCCAGTGTT-AGCTGGAGTCACCAGTGCTTCCAAGAT-GCGAGGTTTTAAACATCAACCCCGTGGAAG---------TGTAA------CA---------------ATGTTTTTGCTTTT---------ATTT--TTGGCAT---CAGGAATGTATTGCG---C--CAAGCGGTAAAAATTTAAG-T-CGTAAAAAACGA--TCATTAACTTTTCTCCCTTGATGTTATTTataaatttctattgtatgttggtcaatgtatatcacttgaacatttatagttgtcaaacagttttctttcctttcagtggtctacacactccgccatttaaa
gi|6 : TAAAGA--ATTTAAACA-GATT-AGACGGAT--TATCTTATGTTACTT-TGGTTAGATACAAAC-------TGAATCGCAAAGTCAATC-ATAT---C-TTTAATATG--CTCAT---------TCATTTCATATG-TGG
gi|6 : ctttactCAAATTAAAACAAA--CCTTATACAACACGAAA-TGTTTTA-TTTAATTTCTAAAATTCAGTCACATAGGATGCGCAAGTCCAAC--------------------GGATAGTTAAATCAAACGCAtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgccaaattaaaacaaaccttatacaacacgaaatgttttatttaatttctaaaattcagtcacataggatgcgcaagtccaacggatagttaaatcaaacgcaa
gi|7 : ctttacttaaagaatttaaacagattagacggattatcttatgttactttggttagatacaaactgaatcgcaaagtcaatcatatctttaatatgctcattcatttcatatgtggtaagtccattggacattcatattgtcaaaagcacttttcctttgtcactttcgcCAAGACGG--------------T------------AG---------TGTGA------AATTTTATTTTGCTTTTA-----------TT----------TTT--T----AT---CAGAAATGTGTAGTG---T--CGA-TG--GTAA----AAGCT-TTTAAAG---TAATTTA-TGGCTCCTTCCCTTTG--GTTATTTCTTCTTTGACACCTTCGG--------GACCGTGCGATCTCT-CAAACAA----TTCC---TTGAAATGT-TTCTTTA-CC-TAAAGAAAAGTAGT-TT-CTAAATTTAGTCAACTT-----a
gi|8 : ataaaaacaGAGTTG-CAAA-TAA-----AACGC---GTATT-TCATGACACT---AG--T-GT-TG--AACA--CGTGTTGCAC----AAGTT-TACTCCTGACT-TT-AGCGGGAG-CATCA-TG-TTTCAACATGGCGGAGA-------ATAAAG--------AG---------T-TGACATATGAA---------------A-----------TTAAA------ATTT--T----G-----GGGAATATAAAGCAAACTTACCA-CG--AAAA----AGA-TACATAAAG---Ta
gi|9 : agTCATAAATA--TTTCAAGCA-GATG-GGATGGAT--TCACTACCGTTAATT-GGATTAGATACAAACAGGAAACTGAATCGCAAAGTC-ATTAATAT---C-TTTAATATG--TCCATTTATCATGCTCACTTCATAGGATGGAttaactaagtcactgattttttt