lowQualScore : 111111 1 111 1 1 1111111 33 111111 222222222222222
lowQualScore : 6 77 7 9 7 3 44 3 77 3 555 999999 0 7 0 2 3 4 4 4 777 11 1 4 0 4 222 0 2 1111111 66 2 0 4 55 4 0 88 4 777 66 1 4 99 3 777 555555 4 99 222222222222222 55 4 3 6 5 0 1 6666 99 66 4 66 5 2
lowQualScore : . .. . . . . .. . .. . ... ...... . . . . . . . . ... .. . . . . ... . . ....... .. . . . .. . . .. . ... .. . . .. . ... ...... . .. ............... .. . . . . . . .... .. .. . .. . .
lowQualScore : 0 22 6 6 1 3 66 3 00 3 888 222222 9 3 5 0 6 0 0 0 000 22 1 4 3 0 555 2 7 4444444 99 7 3 4 22 4 8 22 0 666 33 6 0 33 4 000 333333 0 55 444444444444444 55 0 4 0 2 7 6 1111 55 11 4 99 0 0
consensus : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATG-TTTGATATTCTCCTAC--A-AGTA-NTTT-TTTCTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AA-TTATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT---GAAAATATAGGCCCCACAGGAAAA-----TGGCCCACCGGAGACAT-TTCTAAATGC-ACT-AGACATACACTT-CACTTT-TT--AAAAAAAAGTTCGG-ATG-TATGG---GGA----TT-TT--TTT------AA-------AAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-G--GGCTGA--TTTTCAG--TAAAA-ATG--GCAAA-TAATTA
Reference ( gi|7 ) : ATTAACATTA-ATTATCTGTAAGGACCAAAATTTGCCGGAAATGGGATG-TTTGATATTCTCCTAC--A-AGTA-TTTT-TTTCTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AA-TTATAT---TCCTAGCTGTTGTCATGGAAACACCA-GTCAAATGAAG-CAAAACAT---GAAAATATAGGCACCAAAGGAAAA-----TAGCTTACTGGAAACAT-TTCTAAATGC-ACT-AGACATACACTC-CACTTT-TC--AAAAAAACCTTCGG-ATG-TATAG---GCA----TT-TT--TTT------AA-------AAAC--T-TAGATGTTTAAGATTGCATCAAAAAGAACATTTTA-G--GGCTGA--TTTTCAG--TAAAA-ATG--GCAAA-TAATCA
gi|4 : TTAACACTG-ATTATCTGCAAGGAACAAAATTTGCTGGAAATGGGATG-TTTGATATTCTCCTAC--A-AGTA-TTTTTTTTCTTCAA---GTAG------GCCTATTT-AGTATTAAAATAAGTTG-TACAT-AAA-AA-TTATAT---TCCTAGCTGTTGTCATGCAAACACCA-GTCAAATAAAA-CAAAACAT---GAAAATATAGGCCCCACAGGAAAA-----TAACCCACTGGAAACAT-TTCTAAATGC-ACT-AGACATACACTT-CACTTT-TT--AAAAAAGAGTTTGA-ATG-TATAG---GGA----TC-TT--TTT------TA-------AAAC--T-TAGATGTTTAAGATGGTATCAAAAAGAACATTTTA-G--GGCTGA--TTTT
gi|1 : gTTAACACTG-ATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATG-TTTGATATTCTCCTAC--A-AGTAATTTT-TTTCTTCAA---GTATCGGTATGCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AA-TTATAT---TCTTAGCTGTTGTCATGGAAACACCA-GTCAAATAAAG-CAAAACAT---GAAAATATAGGCCCCACAGGAAAA-----TAGCCCACTGGAAACAT-TTCTAAATGC-GCT-GGACATACACTT-CACTTT-TT--AAgttaattcccattaaaacataaaaatattgcttattattcttttaaatcatttac
gi|3 : TTAACACGGCATTATCTGTAAGGACCAAAGTTTGCTGGACATGATATGTTTTGATATTCT-CTACAAA-AGTA-ATTT-TTTATTAAACTTATATTAATAGGCATATTTGAG----AAAATTAATTGATATAT-AAA-AATTTATAT---T-CTAGCTGTTGTCATGGTA--ATCA-GTCAAAT-AAG-CAAATCAT---AGAAAT-T-GGCCCCACTGG-AAA-----TAGCTCACTGGAAACAT-TTCTAAATGCAACTCAGACATACACTT-CATTTT-TT--AAAAAGA-TTTCGGAATG-TTTGA---GGA----TT-TT--TTT------TT-------AAACTAT-TAGATTTTTAAGATTGTACC-AAAAGAACATTTTACG--GGGTGACTTCTTCAG--TAAAA-AT---GCAAA-TAATTcnnnnnnnnnnnnnnnnnnnnnnnnntgaacaaaaagatcggatgctatgggaatttttttaaaaactgtaaatgtttaagattgtatcaaaagaaacattttaggctgattttcagtctaaaacataacaaataagtacacccatttctttgcttgtattttaaagaa
gi|15 : TTAACGCTG-ACTATCTGTAAGGACCAACATTTGCTGGAAATGGGATA-TTTGATATTTTCCTAC--A-AGTA-TTTT-TTTCTTCAA---GTAT------Gacaccttgttttctgcttgttatttacaaaaaa
gi|2 : atcAACACTG-ATTATCTGTTAGGACCAAATTTTGCTGGAAATGGAATG-CTTGATATTCTCCTAT--A-AGTA-AAGT-TTTCTTCAA---GTTT------GCCCATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AA-TCATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAA-CAAAATAT---GAAAATATAGGCCCCACAGGAAAA-----GAGCGAATCGGAGACAT-TTCTAAATGC-ACA-AGACATACATTT-CACTTT-ACCAAAAAAAAAGATGGG-ATA-GATAG---GGA----TT-CT--TTTTAAAAAAA-------AAAC--T-TAGATGTTTAAGATAGTAACAAAAATAACATTTTA-G--GGTTGGT-TTTTCAG--TAAAA-GTG--GCAAA-CAA
gi|12 : cAACACTG-ATTATCTGTAAGGACCAAATTTTGCTGGAAATGGAATG-TTTGATATTCTCCTAC--A-ATTA-ATTT-TTTCTTCAA---GTAC------GCCCATTT-AGTATTAAAATAAATTG-TATAT-AAA-AA-TGATAT---TCCTatacatgtacctcctttttctccttgtatctaaacttttttaaaaa
gi|8 : AACACTA-GT-ATCTATA--GACCAAA-TTTGCATGAAATA--ATG-T---ATATTC-CCTAT--A-AGTA-AATT-TTTCTTCAA---GC-T-------CCCATT-----AT----ATAA------ATAT-AAATAA-GCGCATCAATCCTA--CGT-GTCATG-AAACGCCA---CAAATAAAAACAAAACATAATGAAAA-----GCAC--AGGGAAAAAACAATCGATTAC-----ACATATCCTAAAT-C-ACA-AACCA-ACATTCTCACCTTACC--AAAAAAAAAT---A-ATGATATAA---GAAATCTTT-TC--TTT------AAAAAAAAAAAAC----TAGA-GTT---AATAGTAACAAAAA-AACA--TTA-G--G--TGA----TTCA---T-AAA-ATGCAACAAA-TAt
gi|6 : cTA-GTTATCTTCAAGAACTAATGTTTGCTGGAAATGGAATA-TTTGATATCCCCCTAC--A-AATA-TTTG-T--CTTCAA---ATAT------GCCCTTTA-AGTATTAGAAAAAGTTG-TATAT-AAG-CA-TTATAT---CCCTAGGTGTTGTCATGTAAACACCATATCAAATAAAG-CAAAGCAT---GACAATATAGGCCCCA--------------CGTCTCCCGGAGATAT-TTCTAAATGC-CTT-TGGTATACACTT-CACTTT-TT--TCAAAAGC--TGAG-ATG-CATAGAGAATA----TT-TTACTTT------AA-------A-----T-GAGATGCTTCGGATGGTAACAAAAAGAAGATTTTA-G--GGCTGG--TTGTAAG--TAATA-ATcatac
gi|5 : aTCTGTAAG-AC--AAATT--CTGGAAATAG-ATG-TT--ATATTCTCCTAC--AGAGTA-TTTT-TT-CTTCAA---GTAT------GCCTATTTTAGTATTAAAATAAGTTG-TATATAAAA-AA-TTGTGT---TCCTAGCTGTTGTCAT-GCAACACCA-GTCAAATAAAG-CAAAACAT---GAAAATATAGGCCCCACAGGAAAA-----TGGCCCATTGGAAACAT-TTTTAAATGC-ACT-AGACATACACTT-CACTTT-TT--AAAAAAAAGTTCGG-ATG-CATGG---GGA----TT-TT--TTTTC----AA-------AAAC--T-TAGATGTTTAAGGTTGTATCCAAAAGAACATTTTG-G--GGCTGA--TTTTCAG--TGAAA-ATG--GCAAA-TAATTtaccgtctgtttctcttcgtatttaacaaaatatgtccaaata
gi|13 : aactgaatTCTCTAAGGACCAAATTTTGCTGGAAAAGGAATG-TTTGATATTCCCCTGC--T-ATTA-TTTT-TTTCTTTAA---GTAT------GCTTTATT-ATTATTAGACTGATTTG-TATAccccctttttctgcttttatttttaaaaaatgtc
gi|10 : aacgctcTCTATAAGGACCAAATTTTGC----------------TGATATTCCCCTA-----------------TCTTTAA---GTAT------GTTTTCTC-ATTATTAGACTGATTTG-TATAA-TAG-AA-CTATTT---TCCTA---GTTGTCATGGAAACGTCA-ATTGAATAATG-TAAAACATAG-GAAAATATAGATCCCACATGAAata
gi|9 : acgctcTTTGCTGGGAATGGAATG-CTTTAT-TTCT-------A-TGTA-GTTT-TTTCC---A---GTTT------GCC-ATTT-GGTATTAG--T--GTTG-TAT-T-AA--------TAT---TTTAGGTTGTTGTCATGGAAA---GA-GTTA---------AAGATAT---GA----ATAAGGAC--AAGGAA--------GGCCGATTGGGGAC-T-TTC-AAATGC-----AG------ATTT-TA--TT-TC--AAACAGA--TTGGG-ATA--GTGG---GTT----CC-TTG-TTT------AA-------CAAC--T-TAGATGTTTAAA--TGTA-AAAAAATAAC-TTTTG-GTTGGTT----TTTTCAG--TAACA-GTG--GCAAACCAATC
gi|16 : TCAAATAAAG-CCAAAAAT---GAAAATATAGGCCCCACAGGAAAA-----TGGCTCACAGGAGACAT-TTCTAAATGC-ACT-AGACTTACACTT-CAtgtactctttctcgcttgtattttttt
gi|14 : -CACTTT-TT--AAAAAAAG-TTCGG-ATG-TAT-G---GAA----TTCTT--TTT------AA-------AG----T-TAAATGTTTAAGATGGTATACAAAAGAATATTTTA-A--GGCTGA--TTTTCAG--TAAAA-ATG--GCAAA-TA
gi|11 : TT-TA--AAAAAAATGTTCGG-ATG-TATGG---GGA----TT-TT--TTT------TA-------AAAC--T-TAGATGTTTAAGATTGTATCAAAAAGAACATTTTA-G--GGCTGA--TTTTCAG--TAAAA-AAG--GCAAA-TTATT
gi|1 : TCGG-ATGCTATGG---GAA----TT-TT--TTT------AA-------AAAC--TGTAAATGTTTAAGATTGTATCAAAAGAAACATTTTA----GGCTGA--TTTTCAGTCTAAAACATA--ACAAA-TAAcaccctttttttgcttgtattttaaaaaaatgtc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATTTTCCAGTGAAATGGCAAATAATTTACCCTTTTTCTGCTTGTATTTTTCAAAAAAAAAAATGTCTGAG
Alignments
lowQualScore : 111111 3333333333333333333 2222222222 22222222 11
lowQualScore : 4 4 3 3 44 8 3 3 555 777777 0 6 1 3 3 3 3 666 1 3 4 3 55 55 888 0 2 55 1111111111111111111 1111111111 7777 1 4 88 1 3 55 0 3 3 7 8888888 55 55 88888888 55 3 4 3 0 3 22 55 3 55
lowQualScore : . . . . .. . . . ... ...... . . . . . . . ... . . . . .. .. ... . . .. ................... .......... .... . . .. . . .. . . . . ....... .. .. ........ .. . . . . . .. .. . ..
lowQualScore : 4 2 1 1 22 1 1 1 444 777777 1 7 0 3 6 6 6 444 6 0 0 6 00 00 444 7 1 55 0000000000000000000 5555555555 6666 9 0 66 3 6 77 5 6 6 3 5555555 00 00 66666666 00 6 5 9 5 6 55 00 6 55
consensus : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAAT-AAAGCAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
Reference ( family-700 ) : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAAT-AAAGCAAAACAT--GA--AAATATAGGCCCCACAGGAAAATGGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
gi|1 : TTAACACTG-ATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTAATTTT-TTTCTTCAA---GTATCGGTATGCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCTTAGCTGTTGTCATGGAAACACCA-GTCAAAT-AAAGCAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACTGG--AAACATTTCTAAATGCGCTGGACATACACTTCACTTTTTAACNNNN-NN-NNNNNNNNNNN-NNNNNNN--NTGAACAAAAA-GATCGG-AT-GCTATGGGA---A---T--TTT--TTT--------AAAAAC--TGTAAATGTTTAAGATTGTATCAAAAGAAACATTTTA--GGCTGA--TTTTCAGTCTAAAACATA--ACAAATAAGTA
gi|10 : TCTATAAGGACCAAATTTTGCTG----------------ATATTCCCCTA----------------T-CTTTAA---GTAT------GTTTTCTC-ATTATTAGACTGATTTG-TATAA-TAG-AACT-ATTT---TCCTAG---TTGTCATGGAAACGTCA-ATTGAAT-AATGTAAAACATAGGA--AAATATAGATCCCACATGAAcacccatttctttgcttgtattttaaagaa
gi|11 : acgctcT--TTAAA-AAAAATGTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------TAAAAC--T-TAGATGTTTAAGATTGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-AAG--GCAAATTATTA
gi|12 : AACACTG-ATTATCTGTAAGGACCAAATTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--TTAATTTT-TT-CTTCAA---GTAC------GCCCATTT-AGTATTAAAATAAATTG-TATAT-AAA-AATG-ATAT---TCCTcaccctttttttgcttgtattttaaaaaaatgtc
gi|13 : TCTCTAAGGACCAAATTTTGCTGGAAAAGGAATGTTT-GATATTCCCCTGCT-A--TTATTTTT-TT-CTTTAA---GTAT------GCTTTATT-ATTATTAGACTGATTTG-TATAt
gi|14 : aacgctcCACTTT--TTAAA-AAAA--GTTCGG-AT-G-TATGGAA---T---T--CTT--TTT--------AAAG----T-TAAATGTTTAAGATGGTATACAAAAGAATATTTTA-AGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAata
gi|15 : TTAACGCTG-ACTATCTGTAAGGACCAACATTTGCTGGAAATGGGATATTT-GATATTTTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------G
gi|16 : atcTCAAAT-AAAGCCAAAAAT--GA--AAATATAGGCCCCACAGGAAAATGGCTCACAGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACTTACACT-TCA
gi|17 : --TTTCCAG--TGAAA--TG--GCAAATAATT
gi|2 : atAACACTG-ATTATCTGTTAGGACCAAATTTTGCTGGAAATGGAATGCTT-GATATTCTCCTATA-A--GTAAAGTT-TT-CTTCAA---GTTT------GCCCATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATC-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAAT-AAAACAAAATAT--GA--AAATATAGGCCCCACAGGAAAAGAGCGAATCGG--A-------------------GACAT----------TTCTAAATGCA-CA-AGACATACATT-TCACTTTACCAAAA-AAAAA-GATGGG-AT-A-GATAGGG---A---T--TCT--TTTTAAAAA--AAAAAC--T-TAGATGTTTAAGATAGTAACAAAAATAACATTTTA-GGGTTGGT-TTTTCAG--TAAAA-GTG--GCAAACAAATAtaccctttttctgcttgtatttttcaaaaaaaaaaatgtctgag
gi|3 : cTTAACACGGCATTATCTGTAAGGACCAAAGTTTGCTGGACATGATATGTTTTGATATTCTC-TACA-AAAGTAATTTT-TT-ATTAAACTTATATTAATAGGCATATTTGAG----AAAATTAATTGATATAT-AAA-AATTTATAT---TC-TAGCTGTTGTCATGGTAAT--CA-GTCAAAT-AA-GCAAATCAT--AG--AAAT-T-GGCCCCACTGGAAA-TAGCTCACTGG--A-------------------AACAT----------TTCTAAATGCAACTCAGACATACACT-TCATTTT--TT-AA-AAAGA-TTTCGGAAT-G-TTTGAGG---A---T--TTT--TTT--------TTAAACTAT-TAGATTTTTAAGATTGTACC-AAAAGAACATTTTACGGGGTGACTTCTTCAG--TAAAA-AT---GCAAATAATTAcatgtacctcctttttctccttgtatctaaacttttttaaaaa
gi|4 : TTAACACTG-ATTATCTGCAAGGAACAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTTTTT-CTTCAA---GTAG------GCCTATTT-AGTATTAAAATAAGTTG-TACAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGCAAACACCA-GTCAAAT-AAAACAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAACCCACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAGA-GTTTGA-AT-G-TATAGGG---A---T--CTT--TTT--------TAAAAC--T-TAGATGTTTAAGATGGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTacaccttgttttctgcttgttatttacaaaaaa
gi|5 : gACTG-AAT-TCTGTAAGA--CAAATT---CTGGAAATAGA-TGTT---ATATTCTCCTACAGA--GTA-TTTT-TT-CTTCAA---GTAT------GCCTATTTTAGTATTAAAATAAGTTG-TATATAAAA-AATT-GTGT---TCCTAGCTGTTGTCAT-GCAACACCA-GTCAAAT-AAAGCAAAACAT--GA--AAATATAGGCCCCACAGGAAAATGGCCCATTGG--A-------------------AACAT----------TTTTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-CATGGGG---A---T--TTT--TTTTC------AAAAAC--T-TAGATGTTTAAGGTTGTATCCAAAAGAACATTTTG-GGGCTGA--TTTTCAG--TGAAA-ATG--GCAAATAATTAgttaattcccattaaaacataaaaatattgcttattattcttttaaatcatttac
gi|6 : aTTATCTTCAAGAACTAATGTTTGCTGGAAATGGAATATTT-GATATCCCCCTACA-A--ATA--TTT-GT-CTTCAA---ATAT------GCCCTTTA-AGTATTAGAAAAAGTTG-TATAT-AAG-CATT-ATAT---CCCTAGGTGTTGTCATGTAAACACCATATCAAAT-AAAGCAAAGCAT--GA--CAATATAGGCCCCAC---------GTCTCCCGG--A-------------------GATAT----------TTCTAAATGCC-TT-TGGTATACACT-TCACTTT--TT--T-CAAAA-GCTGAG-AT-G-CATAGAGAATA---T--TTTACTTT--------AAA-----T-GAGATGCTTCGGATGGTAACAAAAAGAAGATTTTA-GGGCTGG--TTGTAAG--TAATA-ATccccctttttctgcttttatttttaaaaaatgtc
gi|7 : atagTTAACATTA-ATTATCTGTAAGGACCAAAATTTGCCGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACACCA-GTCAAAT-GAAGCAAAACAT--GA--AAATATAGGCACCAAAGGAAAATAGCTTACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-CCACTTT--TCAAA-AAAAC-CTTCGG-AT-G-TATAGGC---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATTGCATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATCAtaccgtctgtttctcttcgtatttaacaaaatatgtccaaata
gi|8 : aAACACT--AGTATCTATA--GACCAAA-TTTGCATGAAAT--AATGT----ATATTC-CCTATA-A--GTAAATTT-TT-CTTCAA---GC-T-------CCCATT-----AT----ATAA------ATAT-AAATAAGC-GCATCAATCCTA--CGT-GTCATG-AAACGCCA---CAAATAAAAACAAAACAT--AATGAAA---AG----CACAGGGAAA-AAACAATCGATTA-------------------CACATA---------TCCTAAAT-CA-C--AAACCAACATTCTCACCTTA-CCAAA-AAAAA-AT---A-AT-GATATAAGA---AATCT--TTT--CTTTAAAAAAAAAAAAC----TAGA-GTT---AATAGTAACAAAAA-AACA--TTA-GG--TGA----TTCA---T-AAA-ATGCAACAAATA
gi|9 : cTTTGCTGGGAATGGAATGCTT-TAT-TTCT-----A-T--GTAGTTTT-TT-CC---A---GTTT------GCC-ATTT-GGTATTAG--T--GTTG-TAT-T-AA--------TAT---TTTAGGTTGTTGTCATGGAAA-G--A-GT----T-AAAG----ATAT--GA--A--TA-AGG----ACAAGGAA--GGCCGATTGG--G-------------------GAC-T----------TTC-AAATGCA-----GAT------T-TTA--TT--TCAAA-CAGA---TTGGG-ATAG-T---GGG---T---TCCTTG--TTT--------AACAAC--T-TAGATGTTTAA-AT-GTA-AAAAAATAAC-TTTT---GGTTGGTTTTTTCAG--TAACA-GTG--GCAAAcatac
Alignments
lowQualScore : 111111 3333333333333333333 2222222222 22222222 11
lowQualScore : 4 4 3 3 44 8 3 3 555 777777 0 6 1 3 3 3 3 666 1 3 4 3 55 55 5 0 2 55 1111111111111111111 1111111111 7777 1 4 88 1 3 55 0 3 3 7 8888888 55 55 88888888 55 3 4 3 0 3 22 55 3 55
lowQualScore : . . . . .. . . . ... ...... . . . . . . . ... . . . . .. .. . . . .. ................... .......... .... . . .. . . .. . . . . ....... .. .. ........ .. . . . . . .. .. . ..
lowQualScore : 4 2 1 1 22 1 1 1 444 777777 1 7 0 3 6 6 6 444 6 0 0 6 00 00 6 7 1 55 0000000000000000000 5555555555 6666 9 0 66 3 6 77 5 6 6 3 5555555 00 00 66666666 00 6 5 9 5 6 55 00 6 55
consensus : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
Reference ( family-700 ) : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
gi|1 : TTAACACTG-ATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTAATTTT-TTTCTTCAA---GTATCGGTATGCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCTTAGCTGTTGTCATGGAAACACCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACTGG--AAACATTTCTAAATGCGCTGGACATACACTTCACTTTTTAACNNNN-NN-NNNNNNNNNNN-NNNNNNN--NTGAACAAAAA-GATCGG-AT-GCTATGGGA---A---T--TTT--TTT--------AAAAAC--TGTAAATGTTTAAGATTGTATCAAAAGAAACATTTTA--GGCTGA--TTTTCAGTCTAAAACATA--ACAAATAAGTA
gi|10 : TCTATAAGGACCAAATTTTGCTG----------------ATATTCCCCTA----------------T-CTTTAA---GTAT------GTTTTCTC-ATTATTAGACTGATTTG-TATAA-TAG-AACT-ATTT---TCCTAG---TTGTCATGGAAACGTCA-ATTGAATAATG-TAAAACATAGGA--AAATATAGATCCCACATGAAcacccatttctttgcttgtattttaaagaa
gi|11 : acgctcT--TTAAA-AAAAATGTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------TAAAAC--T-TAGATGTTTAAGATTGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-AAG--GCAAATTATTA
gi|12 : AACACTG-ATTATCTGTAAGGACCAAATTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--TTAATTTT-TT-CTTCAA---GTAC------GCCCATTT-AGTATTAAAATAAATTG-TATAT-AAA-AATG-ATAT---TCCTcaccctttttttgcttgtattttaaaaaaatgtc
gi|13 : TCTCTAAGGACCAAATTTTGCTGGAAAAGGAATGTTT-GATATTCCCCTGCT-A--TTATTTTT-TT-CTTTAA---GTAT------GCTTTATT-ATTATTAGACTGATTTG-TATAt
gi|14 : aacgctcCACTTT--TTAAA-AAAA--GTTCGG-AT-G-TATGGAA---T---T--CTT--TTT--------AAAG----T-TAAATGTTTAAGATGGTATACAAAAGAATATTTTA-AGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAata
gi|15 : TTAACGCTG-ACTATCTGTAAGGACCAACATTTGCTGGAAATGGGATATTT-GATATTTTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------G
gi|16 : atcTCAAATAAAG-CCAAAAAT--GA--AAATATAGGCCCCACAGGAAAATGGCTCACAGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACTTACACT-TCA
gi|17 : --TTTCCAG--TGAAA--TG--GCAAATAATT
gi|2 : atAACACTG-ATTATCTGTTAGGACCAAATTTTGCTGGAAATGGAATGCTT-GATATTCTCCTATA-A--GTAAAGTT-TT-CTTCAA---GTTT------GCCCATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATC-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAA-CAAAATAT--GA--AAATATAGGCCCCACAGGAAAAGAGCGAATCGG--A-------------------GACAT----------TTCTAAATGCA-CA-AGACATACATT-TCACTTTACCAAAA-AAAAA-GATGGG-AT-A-GATAGGG---A---T--TCT--TTTTAAAAA--AAAAAC--T-TAGATGTTTAAGATAGTAACAAAAATAACATTTTA-GGGTTGGT-TTTTCAG--TAAAA-GTG--GCAAACAAATAtaccctttttctgcttgtatttttcaaaaaaaaaaatgtctgag
gi|3 : cTTAACACGGCATTATCTGTAAGGACCAAAGTTTGCTGGACATGATATGTTTTGATATTCTC-TACA-AAAGTAATTTT-TT-ATTAAACTTATATTAATAGGCATATTTGAG----AAAATTAATTGATATAT-AAA-AATTTATAT---TC-TAGCTGTTGTCATGGTAAT--CA-GTCAAATAA-G-CAAATCAT--AG--AAAT-T-GGCCCCACTGGAAA-TAGCTCACTGG--A-------------------AACAT----------TTCTAAATGCAACTCAGACATACACT-TCATTTT--TT-AA-AAAGA-TTTCGGAAT-G-TTTGAGG---A---T--TTT--TTT--------TTAAACTAT-TAGATTTTTAAGATTGTACC-AAAAGAACATTTTACGGGGTGACTTCTTCAG--TAAAA-AT---GCAAATAATTAcatgtacctcctttttctccttgtatctaaacttttttaaaaa
gi|4 : TTAACACTG-ATTATCTGCAAGGAACAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTTTTT-CTTCAA---GTAG------GCCTATTT-AGTATTAAAATAAGTTG-TACAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGCAAACACCA-GTCAAATAAAA-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAACCCACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAGA-GTTTGA-AT-G-TATAGGG---A---T--CTT--TTT--------TAAAAC--T-TAGATGTTTAAGATGGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTacaccttgttttctgcttgttatttacaaaaaa
gi|5 : gACTG-AAT-TCTGTAAGA--CAAATT---CTGGAAATAGA-TGTT---ATATTCTCCTACAGA--GTA-TTTT-TT-CTTCAA---GTAT------GCCTATTTTAGTATTAAAATAAGTTG-TATATAAAA-AATT-GTGT---TCCTAGCTGTTGTCAT-GCAACACCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATGGCCCATTGG--A-------------------AACAT----------TTTTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-CATGGGG---A---T--TTT--TTTTC------AAAAAC--T-TAGATGTTTAAGGTTGTATCCAAAAGAACATTTTG-GGGCTGA--TTTTCAG--TGAAA-ATG--GCAAATAATTAgttaattcccattaaaacataaaaatattgcttattattcttttaaatcatttac
gi|6 : aTTATCTTCAAGAACTAATGTTTGCTGGAAATGGAATATTT-GATATCCCCCTACA-A--ATA--TTT-GT-CTTCAA---ATAT------GCCCTTTA-AGTATTAGAAAAAGTTG-TATAT-AAG-CATT-ATAT---CCCTAGGTGTTGTCATGTAAACACCATATCAAATAAAG-CAAAGCAT--GA--CAATATAGGCCCCAC---------GTCTCCCGG--A-------------------GATAT----------TTCTAAATGCC-TT-TGGTATACACT-TCACTTT--TT--T-CAAAA-GCTGAG-AT-G-CATAGAGAATA---T--TTTACTTT--------AAA-----T-GAGATGCTTCGGATGGTAACAAAAAGAAGATTTTA-GGGCTGG--TTGTAAG--TAATA-ATccccctttttctgcttttatttttaaaaaatgtc
gi|7 : atagTTAACATTA-ATTATCTGTAAGGACCAAAATTTGCCGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACACCA-GTCAAATGAAG-CAAAACAT--GA--AAATATAGGCACCAAAGGAAAATAGCTTACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-CCACTTT--TCAAA-AAAAC-CTTCGG-AT-G-TATAGGC---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATTGCATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATCAtaccgtctgtttctcttcgtatttaacaaaatatgtccaaata
gi|8 : aAACACT--AGTATCTATA--GACCAAA-TTTGCATGAAAT--AATGT----ATATTC-CCTATA-A--GTAAATTT-TT-CTTCAA---GC-T-------CCCATT-----AT----ATAA------ATAT-AAATAAGC-GCATCAATCCTA--CGT-GTCATG-AAACGCCA---CAAATAAAAACAAAACAT--AATGAAA---AG----CACAGGGAAA-AAACAATCGATTA-------------------CACATA---------TCCTAAAT-CA-C--AAACCAACATTCTCACCTTA-CCAAA-AAAAA-AT---A-AT-GATATAAGA---AATCT--TTT--CTTTAAAAAAAAAAAAC----TAGA-GTT---AATAGTAACAAAAA-AACA--TTA-GG--TGA----TTCA---T-AAA-ATGCAACAAATA
gi|9 : cTTTGCTGGGAATGGAATGCTT-TAT-TTCT-----A-T--GTAGTTTT-TT-CC---A---GTTT------GCC-ATTT-GGTATTAG--T--GTTG-TAT-T-AA--------TAT---TTTAGGTTGTTGTCATGGAAA-G--A-GT----TAAAG-----ATAT--GA--A--TA-AGG----ACAAGGAAG--GCCGATTGG--G-------------------GAC-T----------TTC-AAATGCA-----GAT------T-TTA--TT--TCAAA-CAGA---TTGGG-ATAG-T---GGG---T---TCCTTG--TTT--------AACAAC--T-TAGATGTTTAA-AT-GTA-AAAAAATAAC-TTTT---GGTTGGTTTTTTCAG--TAACA-GTG--GCAAAcatac
Alignments
lowQualScore : 111111 3333333333333333333 2222222222 22222222 11
lowQualScore : 4 4 3 3 44 8 3 3 555 777777 0 6 1 3 3 3 3 666 1 3 4 3 55 55 5 0 2 55 1111111111111111111 1111111111 7777 1 4 88 1 3 55 0 3 3 7 8888888 55 55 88888888 55 3 4 3 0 3 22 55 3 55
lowQualScore : . . . . .. . . . ... ...... . . . . . . . ... . . . . .. .. . . . .. ................... .......... .... . . .. . . .. . . . . ....... .. .. ........ .. . . . . . .. .. . ..
lowQualScore : 4 2 1 1 22 1 1 1 444 777777 1 7 0 3 6 6 6 444 6 0 0 6 00 00 6 7 1 55 0000000000000000000 5555555555 6666 9 0 66 3 6 77 5 6 6 3 5555555 00 00 66666666 00 6 5 9 5 6 55 00 6 55
consensus : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
Reference ( family-700 ) : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
gi|1 : TTAACACTG-ATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTAATTTT-TTTCTTCAA---GTATCGGTATGCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCTTAGCTGTTGTCATGGAAACACCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACTGG--AAACATTTCTAAATGCGCTGGACATACACTTCACTTTTTAACNNNN-NN-NNNNNNNNNNN-NNNNNNN--NTGAACAAAAA-GATCGG-AT-GCTATGGGA---A---T--TTT--TTT--------AAAAAC--TGTAAATGTTTAAGATTGTATCAAAAGAAACATTTTA--GGCTGA--TTTTCAGTCTAAAACATA--ACAAATAAGTA
gi|10 : TCTATAAGGACCAAATTTTGCTG----------------ATATTCCCCTA----------------T-CTTTAA---GTAT------GTTTTCTC-ATTATTAGACTGATTTG-TATAA-TAG-AACT-ATTT---TCCTAG---TTGTCATGGAAACGTCA-ATTGAATAATG-TAAAACATAGGA--AAATATAGATCCCACATGAAcacccatttctttgcttgtattttaaagaa
gi|11 : acgctcT--TTAAA-AAAAATGTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------TAAAAC--T-TAGATGTTTAAGATTGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-AAG--GCAAATTATTA
gi|12 : AACACTG-ATTATCTGTAAGGACCAAATTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--TTAATTTT-TT-CTTCAA---GTAC------GCCCATTT-AGTATTAAAATAAATTG-TATAT-AAA-AATG-ATAT---TCCTcaccctttttttgcttgtattttaaaaaaatgtc
gi|13 : TCTCTAAGGACCAAATTTTGCTGGAAAAGGAATGTTT-GATATTCCCCTGCT-A--TTATTTTT-TT-CTTTAA---GTAT------GCTTTATT-ATTATTAGACTGATTTG-TATAt
gi|14 : aacgctcCACTTT--TTAAA-AAAA--GTTCGG-AT-G-TATGGAA---T---T--CTT--TTT--------AAAG----T-TAAATGTTTAAGATGGTATACAAAAGAATATTTTA-AGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAata
gi|15 : TTAACGCTG-ACTATCTGTAAGGACCAACATTTGCTGGAAATGGGATATTT-GATATTTTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------G
gi|16 : atcTCAAATAAAG-CCAAAAAT--GA--AAATATAGGCCCCACAGGAAAATGGCTCACAGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACTTACACT-TCA
gi|17 : --TTTCCAG--TGAAA--TG--GCAAATAATT
gi|2 : atAACACTG-ATTATCTGTTAGGACCAAATTTTGCTGGAAATGGAATGCTT-GATATTCTCCTATA-A--GTAAAGTT-TT-CTTCAA---GTTT------GCCCATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATC-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAA-CAAAATAT--GA--AAATATAGGCCCCACAGGAAAAGAGCGAATCGG--A-------------------GACAT----------TTCTAAATGCA-CA-AGACATACATT-TCACTTTACCAAAA-AAAAA-GATGGG-AT-A-GATAGGG---A---T--TCT--TTTTAAAAA--AAAAAC--T-TAGATGTTTAAGATAGTAACAAAAATAACATTTTA-GGGTTGGT-TTTTCAG--TAAAA-GTG--GCAAACAAATAtaccctttttctgcttgtatttttcaaaaaaaaaaatgtctgag
gi|3 : cTTAACACGGCATTATCTGTAAGGACCAAAGTTTGCTGGACATGATATGTTTTGATATTCTC-TACA-AAAGTAATTTT-TT-ATTAAACTTATATTAATAGGCATATTTGAG----AAAATTAATTGATATAT-AAA-AATTTATAT---TC-TAGCTGTTGTCATGGTAAT--CA-GTCAAATAA-G-CAAATCAT--AG--AAAT-T-GGCCCCACTGGAAA-TAGCTCACTGG--A-------------------AACAT----------TTCTAAATGCAACTCAGACATACACT-TCATTTT--TT-AA-AAAGA-TTTCGGAAT-G-TTTGAGG---A---T--TTT--TTT--------TTAAACTAT-TAGATTTTTAAGATTGTACC-AAAAGAACATTTTACGGGGTGACTTCTTCAG--TAAAA-AT---GCAAATAATTAcatgtacctcctttttctccttgtatctaaacttttttaaaaa
gi|4 : TTAACACTG-ATTATCTGCAAGGAACAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTTTTT-CTTCAA---GTAG------GCCTATTT-AGTATTAAAATAAGTTG-TACAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGCAAACACCA-GTCAAATAAAA-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAACCCACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAGA-GTTTGA-AT-G-TATAGGG---A---T--CTT--TTT--------TAAAAC--T-TAGATGTTTAAGATGGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTacaccttgttttctgcttgttatttacaaaaaa
gi|5 : gACTG-AAT-TCTGTAAGA--CAAATT---CTGGAAATAGA-TGTT---ATATTCTCCTACAGA--GTA-TTTT-TT-CTTCAA---GTAT------GCCTATTTTAGTATTAAAATAAGTTG-TATATAAAA-AATT-GTGT---TCCTAGCTGTTGTCAT-GCAACACCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATGGCCCATTGG--A-------------------AACAT----------TTTTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-CATGGGG---A---T--TTT--TTTTC------AAAAAC--T-TAGATGTTTAAGGTTGTATCCAAAAGAACATTTTG-GGGCTGA--TTTTCAG--TGAAA-ATG--GCAAATAATTAgttaattcccattaaaacataaaaatattgcttattattcttttaaatcatttac
gi|6 : aTTATCTTCAAGAACTAATGTTTGCTGGAAATGGAATATTT-GATATCCCCCTACA-A--ATA--TTT-GT-CTTCAA---ATAT------GCCCTTTA-AGTATTAGAAAAAGTTG-TATAT-AAG-CATT-ATAT---CCCTAGGTGTTGTCATGTAAACACCATATCAAATAAAG-CAAAGCAT--GA--CAATATAGGCCCCAC---------GTCTCCCGG--A-------------------GATAT----------TTCTAAATGCC-TT-TGGTATACACT-TCACTTT--TT--T-CAAAA-GCTGAG-AT-G-CATAGAGAATA---T--TTTACTTT--------AAA-----T-GAGATGCTTCGGATGGTAACAAAAAGAAGATTTTA-GGGCTGG--TTGTAAG--TAATA-ATccccctttttctgcttttatttttaaaaaatgtc
gi|7 : atagTTAACATTA-ATTATCTGTAAGGACCAAAATTTGCCGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACACCA-GTCAAATGAAG-CAAAACAT--GA--AAATATAGGCACCAAAGGAAAATAGCTTACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-CCACTTT--TCAAA-AAAAC-CTTCGG-AT-G-TATAGGC---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATTGCATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATCAtaccgtctgtttctcttcgtatttaacaaaatatgtccaaata
gi|8 : aAACACT--AGTATCTATA--GACCAAA-TTTGCATGAAAT--AATGT----ATATTC-CCTATA-A--GTAAATTT-TT-CTTCAA---GC-T-------CCCATT-----AT----ATAA------ATAT-AAATAAGC-GCATCAATCCTA--CGT-GTCATG-AAACGCCA---CAAATAAAAACAAAACAT--AATGAAA---AG----CACAGGGAAA-AAACAATCGATTA-------------------CACATA---------TCCTAAAT-CA-C--AAACCAACATTCTCACCTTA-CCAAA-AAAAA-AT---A-AT-GATATAAGA---AATCT--TTT--CTTTAAAAAAAAAAAAC----TAGA-GTT---AATAGTAACAAAAA-AACA--TTA-GG--TGA----TTCA---T-AAA-ATGCAACAAATA
gi|9 : cTTTGCTGGGAATGGAATGCTT-TAT-TTCT-----A-T--GTAGTTTT-TT-CC---A---GTTT------GCC-ATTT-GGTATTAG--T--GTTG-TAT-T-AA--------TAT---TTTAGGTTGTTGTCATGGAAA-G--A-GT----TAAAG-----ATAT--GA--A--TA-AGG----ACAAGGAAG--GCCGATTGG--G-------------------GAC-T----------TTC-AAATGCA-----GAT------T-TTA--TT--TCAAA-CAGA---TTGGG-ATAG-T---GGG---T---TCCTTG--TTT--------AACAAC--T-TAGATGTTTAA-AT-GTA-AAAAAATAAC-TTTT---GGTTGGTTTTTTCAG--TAACA-GTG--GCAAAcatac
blockSeqs : C T T G AA A T . CTT TAATAG G T A A T T CAA C G T A AG TG T A TT . A ACTC T C AC A . AT A A A AATA CC AC TAAAAAAA TA . T T C CT . . CA
blockSeqs : . T . . . T . . . . T A . . . . . C G . . . . G C . . . CT A . A A . A . . . AATC . . TAAAAA . . G T . TT . . .
blockSeqs : . T . . . T . . . . . T . . . . . C A . . . . T T . . . CA A . . A . A . . . A . . TC . . A A . T . . .
blockSeqs : . A . . . A . . . . . G . . . . . C A . . . . T T . . . CT A . . A . A . . . T . . . . . T C . . . . .
blockSeqs : . T . . . A . . . . . A . . . . . G A . . . . T T . . . CT A . . A . A . . . A . . . . . G T . . . . .
blockSeqs : . G . . . T . . . . . G . . . . . C A . . . . T C . . . TT A . . A . A . . . A . . . . . T T . . . . .
blockSeqs : . A . . . T . . . . . G . . . . . T G . . . . . T . . . CT A . . A . C . . . A . . . . . G A . . . . .
blockSeqs : . T . . . A . . . . . G . . . . . . G . . . . . C . . . C C . . A . A . . . A . . . . . T T . . . . .
blockSeqs : G . . . G . . . . . G . . . . . . . . . . . . T . . . . . . . . . . . . . A . . . . . A A . . . . .
blockSeqs : A . . . . . . . . . G . . . . . . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ****** ******************* ********** **
originalCons : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
finalCons : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
Alignments
lowQualScore : 111111 3333333333333333333 2222222222 22222222 11
lowQualScore : 4 4 3 3 44 8 3 3 555 777777 0 6 1 3 3 3 3 666 1 3 4 3 55 55 5 0 2 55 1111111111111111111 1111111111 7777 1 4 88 1 3 55 0 3 3 7 8888888 55 55 88888888 55 3 4 3 0 3 22 55 3 55
lowQualScore : . . . . .. . . . ... ...... . . . . . . . ... . . . . .. .. . . . .. ................... .......... .... . . .. . . .. . . . . ....... .. .. ........ .. . . . . . .. .. . ..
lowQualScore : 4 2 1 1 22 1 1 1 444 777777 1 7 0 3 6 6 6 444 6 0 0 6 00 00 6 7 1 55 0000000000000000000 5555555555 6666 9 0 66 3 6 77 5 6 6 3 5555555 00 00 66666666 00 6 5 9 5 6 55 00 6 55
consensus : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
Reference ( family-700 ) : NTTAACACTG-ATTATCTGTAAGGACCAAANTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--GTANTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACCGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATNGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATTA
gi|1 : TTAACACTG-ATTATCTGTAAGGACCAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTAATTTT-TTTCTTCAA---GTATCGGTATGCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCTTAGCTGTTGTCATGGAAACACCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAGCCCACTGG--AAACATTTCTAAATGCGCTGGACATACACTTCACTTTTTAACNNNN-NN-NNNNNNNNNNN-NNNNNNN--NTGAACAAAAA-GATCGG-AT-GCTATGGGA---A---T--TTT--TTT--------AAAAAC--TGTAAATGTTTAAGATTGTATCAAAAGAAACATTTTA--GGCTGA--TTTTCAGTCTAAAACATA--ACAAATAAGTA
gi|10 : TCTATAAGGACCAAATTTTGCTG----------------ATATTCCCCTA----------------T-CTTTAA---GTAT------GTTTTCTC-ATTATTAGACTGATTTG-TATAA-TAG-AACT-ATTT---TCCTAG---TTGTCATGGAAACGTCA-ATTGAATAATG-TAAAACATAGGA--AAATATAGATCCCACATGAAcacccatttctttgcttgtattttaaagaa
gi|11 : acgctcT--TTAAA-AAAAATGTTCGG-AT-G-TATGGGG---A---T--TTT--TTT--------TAAAAC--T-TAGATGTTTAAGATTGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-AAG--GCAAATTATTA
gi|12 : AACACTG-ATTATCTGTAAGGACCAAATTTTGCTGGAAATGGAATGTTT-GATATTCTCCTACA-A--TTAATTTT-TT-CTTCAA---GTAC------GCCCATTT-AGTATTAAAATAAATTG-TATAT-AAA-AATG-ATAT---TCCTcaccctttttttgcttgtattttaaaaaaatgtc
gi|13 : TCTCTAAGGACCAAATTTTGCTGGAAAAGGAATGTTT-GATATTCCCCTGCT-A--TTATTTTT-TT-CTTTAA---GTAT------GCTTTATT-ATTATTAGACTGATTTG-TATAt
gi|14 : aacgctcCACTTT--TTAAA-AAAA--GTTCGG-AT-G-TATGGAA---T---T--CTT--TTT--------AAAG----T-TAAATGTTTAAGATGGTATACAAAAGAATATTTTA-AGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAata
gi|15 : TTAACGCTG-ACTATCTGTAAGGACCAACATTTGCTGGAAATGGGATATTT-GATATTTTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------G
gi|16 : atcTCAAATAAAG-CCAAAAAT--GA--AAATATAGGCCCCACAGGAAAATGGCTCACAGG--A-------------------GACAT----------TTCTAAATGCA-CT-AGACTTACACT-TCA
gi|17 : --TTTCCAG--TGAAA--TG--GCAAATAATT
gi|2 : atAACACTG-ATTATCTGTTAGGACCAAATTTTGCTGGAAATGGAATGCTT-GATATTCTCCTATA-A--GTAAAGTT-TT-CTTCAA---GTTT------GCCCATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATC-ATAT---TCCTAGCTGTTGTCATGGAAACGCCA-GTCAAATAAAA-CAAAATAT--GA--AAATATAGGCCCCACAGGAAAAGAGCGAATCGG--A-------------------GACAT----------TTCTAAATGCA-CA-AGACATACATT-TCACTTTACCAAAA-AAAAA-GATGGG-AT-A-GATAGGG---A---T--TCT--TTTTAAAAA--AAAAAC--T-TAGATGTTTAAGATAGTAACAAAAATAACATTTTA-GGGTTGGT-TTTTCAG--TAAAA-GTG--GCAAACAAATAtaccctttttctgcttgtatttttcaaaaaaaaaaatgtctgag
gi|3 : cTTAACACGGCATTATCTGTAAGGACCAAAGTTTGCTGGACATGATATGTTTTGATATTCTC-TACA-AAAGTAATTTT-TT-ATTAAACTTATATTAATAGGCATATTTGAG----AAAATTAATTGATATAT-AAA-AATTTATAT---TC-TAGCTGTTGTCATGGTAAT--CA-GTCAAATAA-G-CAAATCAT--AG--AAAT-T-GGCCCCACTGGAAA-TAGCTCACTGG--A-------------------AACAT----------TTCTAAATGCAACTCAGACATACACT-TCATTTT--TT-AA-AAAGA-TTTCGGAAT-G-TTTGAGG---A---T--TTT--TTT--------TTAAACTAT-TAGATTTTTAAGATTGTACC-AAAAGAACATTTTACGGGGTGACTTCTTCAG--TAAAA-AT---GCAAATAATTAcatgtacctcctttttctccttgtatctaaacttttttaaaaa
gi|4 : TTAACACTG-ATTATCTGCAAGGAACAAAATTTGCTGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTTTTT-CTTCAA---GTAG------GCCTATTT-AGTATTAAAATAAGTTG-TACAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGCAAACACCA-GTCAAATAAAA-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATAACCCACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAGA-GTTTGA-AT-G-TATAGGG---A---T--CTT--TTT--------TAAAAC--T-TAGATGTTTAAGATGGTATCAAAAAGAACATTTTA-GGGCTGA--TTTTacaccttgttttctgcttgttatttacaaaaaa
gi|5 : gACTG-AAT-TCTGTAAGA--CAAATT---CTGGAAATAGA-TGTT---ATATTCTCCTACAGA--GTA-TTTT-TT-CTTCAA---GTAT------GCCTATTTTAGTATTAAAATAAGTTG-TATATAAAA-AATT-GTGT---TCCTAGCTGTTGTCAT-GCAACACCA-GTCAAATAAAG-CAAAACAT--GA--AAATATAGGCCCCACAGGAAAATGGCCCATTGG--A-------------------AACAT----------TTTTAAATGCA-CT-AGACATACACT-TCACTTT--TTAAA-AAAAA-GTTCGG-AT-G-CATGGGG---A---T--TTT--TTTTC------AAAAAC--T-TAGATGTTTAAGGTTGTATCCAAAAGAACATTTTG-GGGCTGA--TTTTCAG--TGAAA-ATG--GCAAATAATTAgttaattcccattaaaacataaaaatattgcttattattcttttaaatcatttac
gi|6 : aTTATCTTCAAGAACTAATGTTTGCTGGAAATGGAATATTT-GATATCCCCCTACA-A--ATA--TTT-GT-CTTCAA---ATAT------GCCCTTTA-AGTATTAGAAAAAGTTG-TATAT-AAG-CATT-ATAT---CCCTAGGTGTTGTCATGTAAACACCATATCAAATAAAG-CAAAGCAT--GA--CAATATAGGCCCCAC---------GTCTCCCGG--A-------------------GATAT----------TTCTAAATGCC-TT-TGGTATACACT-TCACTTT--TT--T-CAAAA-GCTGAG-AT-G-CATAGAGAATA---T--TTTACTTT--------AAA-----T-GAGATGCTTCGGATGGTAACAAAAAGAAGATTTTA-GGGCTGG--TTGTAAG--TAATA-ATccccctttttctgcttttatttttaaaaaatgtc
gi|7 : atagTTAACATTA-ATTATCTGTAAGGACCAAAATTTGCCGGAAATGGGATGTTT-GATATTCTCCTACA-A--GTATTTTT-TT-CTTCAA---GTAT------GCCTATTT-AGTATTAAAATAAGTTG-TATAT-AAA-AATT-ATAT---TCCTAGCTGTTGTCATGGAAACACCA-GTCAAATGAAG-CAAAACAT--GA--AAATATAGGCACCAAAGGAAAATAGCTTACTGG--A-------------------AACAT----------TTCTAAATGCA-CT-AGACATACACT-CCACTTT--TCAAA-AAAAC-CTTCGG-AT-G-TATAGGC---A---T--TTT--TTT--------AAAAAC--T-TAGATGTTTAAGATTGCATCAAAAAGAACATTTTA-GGGCTGA--TTTTCAG--TAAAA-ATG--GCAAATAATCAtaccgtctgtttctcttcgtatttaacaaaatatgtccaaata
gi|8 : aAACACT--AGTATCTATA--GACCAAA-TTTGCATGAAAT--AATGT----ATATTC-CCTATA-A--GTAAATTT-TT-CTTCAA---GC-T-------CCCATT-----AT----ATAA------ATAT-AAATAAGC-GCATCAATCCTA--CGT-GTCATG-AAACGCCA---CAAATAAAAACAAAACAT--AATGAAA---AG----CACAGGGAAA-AAACAATCGATTA-------------------CACATA---------TCCTAAAT-CA-C--AAACCAACATTCTCACCTTA-CCAAA-AAAAA-AT---A-AT-GATATAAGA---AATCT--TTT--CTTTAAAAAAAAAAAAC----TAGA-GTT---AATAGTAACAAAAA-AACA--TTA-GG--TGA----TTCA---T-AAA-ATGCAACAAATA
gi|9 : cTTTGCTGGGAATGGAATGCTT-TAT-TTCT-----A-T--GTAGTTTT-TT-CC---A---GTTT------GCC-ATTT-GGTATTAG--T--GTTG-TAT-T-AA--------TAT---TTTAGGTTGTTGTCATGGAAA-G--A-GT----TAAAG-----ATAT--GA--A--TA-AGG----ACAAGGAAG--GCCGATTGG--G-------------------GAC-T----------TTC-AAATGCA-----GAT------T-TTA--TT--TCAAA-CAGA---TTGGG-ATAG-T---GGG---T---TCCTTG--TTT--------AACAAC--T-TAGATGTTTAA-AT-GTA-AAAAAATAAC-TTTT---GGTTGGTTTTTTCAG--TAACA-GTG--GCAAAcatac