lowQualScore : 1111111111111111
lowQualScore : 333 222222 1 0000000000000000 2222222222 111 2222222 1111 111 888888888888888888888888 2222 111 33333333 11 1 111 11 111 1111 111 33333 111 222 1 222222222 1111 22 111 1 1 1 111111 111111 22 11 111111 1 2222222 11111 2222 1 11111 11 111111 1 11 9999999999999999999999 1 4 33333 1
lowQualScore : 000 8 333333 0 8 8 8 2 6 99 6 6 0000000000000000 6666666666 666 99 2222222 6 4444 4 111 6 111111111111111111111111 3 0000 55 8 444 8 8 99 88888888 11 66 2 5 2 44 2 444 11 8 2 444 0 5555 6 111 00000 222 6 8 8 222 3 111111111 6 6 8 2222 6 11 4 6 111 3 5 0 1 4 0 2 666 777777 4 777 9999 4 777777 99 2 11 222222 4 4 5 4 4 99 66 2 4 888 0 4 7 6 4 66 66 0000000 888 5 77777 3333 4 4 00000 77 5 5 5 88 00 222222 7 5 6 3 5 11 4444444444444444444444 5 4 3 0 6 33333 7 6
lowQualScore : ... . ...... . . . . . . .. . . ................ .......... ... .. ....... . .... . ... . ........................ . .... .. . ... . . .. ........ .. .. . . . .. . ... .. . . ... . .... . ... ..... ... . . . ... . ......... . . . .... . .. . . ... . . . . . . . ... ...... . ... .... . ...... .. . .. ...... . . . . . .. .. . . ... . . . . . .. .. ....... ... . ..... .... . . ..... .. . . . .. .. ...... . . . . . .. ...................... . . . . . ..... . .
lowQualScore : 000 0 000000 8 0 0 0 8 7 22 7 7 8888888888888888 0000000000 444 22 7777777 7 2222 8 777 7 999999999999999999999999 5 0000 88 0 000 0 0 22 00000000 00 88 5 0 8 44 8 000 00 0 8 000 8 8888 0 777 22222 222 0 0 0 000 3 888888888 7 0 0 7777 7 77 2 7 777 2 0 2 6 0 3 0 222 111111 4 888 4444 4 999999 99 4 33 888888 4 4 0 4 3 88 66 7 4 888 1 4 8 9 0 33 11 2222222 888 0 99999 7777 7 0 00000 00 0 7 0 55 77 333333 0 7 0 7 7 00 0000000000000000000000 0 0 0 0 0 00000 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATANCGGTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTAC-ATTC--G-----------ATATAA--AGT-----ACANNATA--AAACACA------CATCGT-TTCAACT----TCAAG---TGGGGT-TATA--GTACTN----TA----T-----AATGAACCCCA---CGAAATTACAG-TTGT---T-TGAAA-GA--GAAACTGGGTTA-----TTAGA--GCAATGTTTCAAAGAGATACAAATAAGTG---GA--TAGA-AAC---AAAACAATAAT-ACGACATGTAGC---AGCATA-TATACTATACAG-TGTA-AAAAAGGTGGCTTGAATACAG-AGA------GT-ACCAAGGG-ACGGT-GCCTATGCAAAGTCG-ATCAGACTGACAAACT-TGTACT---CTAAGTATAC-AAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAG-AACACTGCAT-----GT-AGC---AGC----A-TACTATA-GTAAGTGTAAAAAAGGGTGGCTTGAATAC-AGAGA------GT-ACCAAGGG-ACGGT-GCCTAT-GCAAAGTCG-ATNTGACTGGCAAACT-TGTACT---CTAAGTATAC-AAAACACTCATTCATTCAGATCAACGTACA-ATAAAAGTAATACAG-AACACT--GCATGTA-----G-C---AGCA-TAC----TATAGTAAGTGTAAAAAAGGTGGCTTGAATAC-AGA-GAG-TACCAA-GGGACGGT-GCCTATGCAAAGTC-GATNTGACTGGCAAACTT-GTAC---TCTAAGTATAC-AAAACACTCATTCATTCAAATCAACGT--ACA--AG--ATAC---TGTGCAAGNAATACAGNANACT-TCATGTAAGCAGCATACTATT
Reference ( gi|1 ) : AGCTATGTGTAAAAAACAATACGAAGAAACGAGACACCAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GAGCCCT-CAGGGGG--CA-TTTAC-ATT---------------ATATAA--AAT-----ACATAATA--AAACACA------TATCGT-TTCAACT----TCAGG---TGGGGT-TATA--ATACTT----TA----T-----AATGAACCCCA---TGAAATTACAG-TTGT---T-TGAAA-GA--GAAACTGGGTT------T-AGA--GCAATGTTTCAAAGAGAGACAGATAAGCG---GA--TAGA-AGC---AAAACAATAAT-ATGACATATAGC---AGCATA-TATACTGTGCAG-TGTA-AACA-GGTGGCTTGAATACAG-AGA------GC-ACCAAGGG-ACGAT-GCCTATACAGAGTCG-ATATGACTGACAAACT-TGTACT---CTAAGTATAC-AAAACACTCATTCATTCATATCAAAGTACA-ATAAAAGTAATACAG-AACACTGTAT-----AT-AGC---AGC----A-TACTATA-GTAATTGTAAAAAAAAGTGGCTTGAACAC-GGAGA------GT-ACCAAGGG-ACGGT-GCCTAT-GTAAAGTCA-ATATGACTGGCAAACT-TGTACT---CTAAGTATAC-ACAACACTCATTCATTCAAATCAACGTACA-ATAAAAGTAATACAG-AACACT--GCATGTA-----A-C---AGCA-TAT----TATAGTGGGTGTAGAAAAGGTGGCTTGAACAC-GGG-GAG-CACCAA-GGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTC-GTAC---TCCAAGTAAAC-AAGACACCCATTCATTCAAATCAACGT--ATACGAG--ATAC---TGTAC---CAATACAATAAATTATTATGTAGCTATCAAATTATTCAA
gi|6 : AGATAA--ATATA-TAAATTTGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTTTAC-ATTCATAACAGTATGATCACATAA--AGT-----ACAATATA--AAACACA------CATCGT-TTCAACA----TCAAG---TGGAGTATACAT-GTACATAAAGTA----TATGTAAAAGAACCGTACGTCGATATT--AG-TTGTGCATGTGTAA-AA--GAAACTGGGTCATATGGT-AGA--ACAATG
gi|2 : ttctgacctactgacccaaatctacatgcacagtgtttgcataatatcagatcaatatgatactcatATACCGGTATAAT------GTT-AT-TCACCAAATCATTGGGCCCTTCAGGGGGGACA-------ATT---------------ATGTAA--CATTTTTAACACAATATAGAACACG------CATCGTTTTCAACT----TTAAG---T--AGT-TATA--a
gi|7 : TATA-T------ATTTAT-TCACTAA-TCAT-GGACCCT-CAGGGGG--CA-TTTAC-ATT---------------tattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|3 : attatatatatataatataataA-T------GTTTATATCACCAA-TCAT-G-GCCCT-CAGGGGG--CA-TTTAC-ATTTATAACAGTATGAC-ACATAA--AGT-----GCATA-TA--AAACACA------CATCGT-TTCAACT----TCATG---TGGGGT-TATA--ATACTG----TA----T-----AATGAA-CCCA---CGAAATTACAGTTTGT---T-TGAAA-GA--TAAACTGGTTT------T-AGA--GCAATGTTTCAATGAGATACAAATAAGTT---GA--TAGA-AAC---AAAACAATAAT----ACATGTAGC---AGC-----ATACTATACAG-TGTA-AAAA-GGTGGCTTGAGTACAG-AGA------GT-ACCAAGGG-ACGGT-GCA-ATGCCAAGTCG-ATCAGACTGACAAACT-TGTACT---C-AAGTATAC-AAAACACTCATTCATTCACATCAACGCATA-ACAAAAGT-ATACAG-AACACTGCAT-----GT-AGC---AGC----A-TACTATA-GTAAAT-TAAAAAAAGGTGGCTTGAATAC-AGAGA------GT-ACCAAGGG-ACGGT-GCCTAT-GCAAAGTCG-ATATGACTGGCAAACT-TATACT---CTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccacgaaattacagttgtttgaaagagaa
gi|10 : -T------ATTTAT-TCATCAA-TCAA-GGTCCCT-CAGGGGG--TA-TGTACAATTCTAGCA---------ATATAG--TGT-----ATAT-AT-----ACACAAGATTTTATGTT-TTCAA-TGAAATCAGGGTATGGGGT-TATA--AT
gi|11 : gttattttggctgtataattactgtgtattttactttGCCCT-CAGGGGG--CA-TTTAC-ATT----------------TATAACAAGT-----ACAATATA--AAACACT------CATAGT-TTCAACA----TCAAG---TGGGGT-TATACTGTACTA----CATGTCT-----AATGAACct
gi|8 : TA--AAACACA------CATCGT-TTCAACT----TCAAG---TGAGGT-T---------------------------------CCCCA---CGAAATTACAG-TTGT---T-TGAAA-GA--GAGACTGGGTT------TTAGA--ACAATGTTTCA--GAGATACAAATAAGTG---GA--TAGA-AAC---AAAACAATAAT-ACGACATGTAGC---AGC-----ATACTATACAG-TGTA-AAAA-GGTGGCTTGAATACAG-AGA------GT-ACCAAGGG-ACatgtaaaaaaaacaa
gi|7 : CCCCA---CGAAATTACAG-TTGT---T-TGAAA-GA--GAA
gi|2 : attatatatatataatataatatatatatttattcactaatcatggaccctcagggggcatttacatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCA---CGAAATTA--G-TTGT---T-TGAAAAGAAGGAAA--GGGTCA-----T-AGAAGGCAAT--TTGAAAGA-ATACAAA--AGTG---GAGTTAGATAACCAAAAAACAATAATTACTGCATGTAGCCCAAGGAAA-TATA---TACAGGTGTATAAAA-AGTGGCT-GAATACAGGAGA------ATTACCAAGGGGACAGT-GTCTATT----GTGG-ATG-----GGCAAACCCTGTACTTTTCTAAGTATAC-AAAACACTCATTCATTCAGATCAACATACATGTACAAGTAATACAG-AACACTTCAT-----GTAAGC---AGC----A-TACTAT---TAAT
gi|4 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaA--GAAACTGGGTT------TTAAA--GCAATGTTTCAAAGAGATACAAACAAGTG---GA--TAGA-AAC---AAAACAATAAT-ACGACATGTAGC---AGCATA-----CTATACAG-TGTA-AAAAAGGTGGCTTGGACACAG-AGACTCAGAGT-ACCAAGGG-ACGGT-GCCTATGCAAAGTCG-ATCAAACTGACAATCT-TGTACT---CTAAGTATAC-AAAACACTCATTCATTCATATCAAAGTATA-ATAAAAGTAATACAA-AACACTGTATGTATAGT-AGC---AGCATATA-TACTATA-GTAAGTGT-AAAAAAGGTGGTTTGAATAC-AAAGA------GT-ACCAAGGG-ATGGT-GCCTAT-GCAAAGTCG-ATATGACTGACAAACT-TATACT---TTAAGTATAC-AAAACACTCATTCATTCAGATCAACGTACA-ATAAAattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|5 : CAGATCAACGTACAA--TAAA-AGT---AATACAG-AAC-ACTGCATGTAGC---AGCATACTATA--GTA-AG-TGTA-AAAAAGGTG-CTTGAATACAG-AGA------GC-ACCAAGGG-ACGGT-GCCTATGCAAAGTCG-ATATGACTGGCAAACT-TGTACT---CTATGTATAC-AAAACACTCATTCATTCAAATCAACGTAC--ATACAAGTAATACAG-AACACTGCAT-----GT-AGC---AGC----ATTACTATA-GTAATAGTGAAAGGGGGT--TTTGAATAC-AGAGA------GC-ACCAAGGG-ACGGT-GCCTAT-GCAAAGTCG-ATCTGACTGGCAGACT-tatatatatgtgaataaataaatacacagagcgagatttcgatatggataggtaaatatatt
gi|34 : aagtatacaaacactcgctcattAAT-ACGACATGTAGC---AGCATACTATACAGT
gi|9 : GCTTGAACACAGGAGA------GT-ACCAAGGG-ACGGTTGCCTATGCAAAGTCGGATCTGACTG-CAAACT-TGTACT---CTAAGTATACAAAAACAC-CATCC--TCACAttattacaaggaatgac
gi|26 : CCTATGCAAAGTC--ATCAGACTGACAAACT----------------ATAC-AAAACACTCATTCATTCAacgctcagggtcctgagtccactccgcggccaccgatgtgaactcaggacccctgacgtttgttgagga
gi|5 : AAGTATAC-AAA-CACTCGCTCATTCAGATCAACGTACA-ATAAAAGTAATACAG-AACACTGCAT-----GT-AGC---AGC----A-TACTATA-GTAAGTGTAAAAAAG-GTG-CTTGAATAC-AGAGA------GC-ACCAAGGG-ACGGT-GCCTAT-GCAAAGTCG-ATATGACTGGCAAACT-TGTACT---CTATGTATAC-AAAACACTCATTCATTCAAATCAACGTAC--ATACAAGTAATACAG-AACACT--GCATGTA-----G-C---AGCATTAC----TATAGTAATAGT-GAAAGGGGGTTTTGAATAC-AGA-GAG-CACCAA-GGGACGGT-GCCTATGCAAAGTC-GATCTGACTGGCAGACTa
gi|38 : C-AAAACACTCATTCATTCAAACCAACGTACA-ATA
gi|32 : TTCATTCAGATCAACGTACA-ATAAAAGTAATACAG-AACA
gi|3 : -ATAGAAACAAAACAATAATAC---AT-----GT-AGC---AGC----A-TACTATA-C--AGTGTAAAAAG--GTGGCTTGAGTAC-AGAGA------GT-ACCAAGGG-ACGGT-GCA-AT-GCCAAGTCG-ATCAGACTGACAAACT-TGTACT---C-AAGTATAC-AAAACACTCATTCATTCACATCAACGCATA-ACAAAAGTA-TACAG-AACACT--GCATGTA-----G-C---AGCA-TAC----TATAGTAAATTAAAAAAAGGTGGCTTGAATAC-AGA-GAG-TACCAA-GGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTT-ATAC---TCattaacatgta
gi|4 : atgtttatatcaccaatcatggccctcagggggcatttacatttataacagtatgacacataaagtgcatataaaacacacatcgtttcaacttcatgtggggttataatactgtataatgaacccacgaaattacagtttgtttgaaagataaactggttttagagcaatgtttcaatgagatacaaataagttg-ATAGAAACAAAACAATAATACGACAT-----GT-AGC---AGC----A-TACTATA-C--AGTGTAAAAAAG-GTGGCTTGGACAC-AGAGACTCAGAGT-ACCAAGGG-ACGGT-GCCTAT-GCAAAGTCG-ATCAAACTGACAATCT-TGTACT---CTAAGTATAC-AAAACACTCATTCATTCATATCAAAGTATA-ATAAAAGTAATACAA-AACACT--GTATGTATAGTAG-C---AGCA-TATATACTATAGTAAGTGTAAAAAAGGTGGTTTGAATAC-AAA-GAG-TACCAA-GGGATGGT-GCCTATGCAAAGTC-GATATGACTGACAAACTT-ATAC---TTTAAGTATAC-AAAACACTCATTCATTCAGATCAACGT--ACAATAA--ATATATATATGT---GAATA-AATAAATt
gi|8 : agaaactgggttttaaagcaatgtttcaaagagatacaaacaagtgg-ATAGAAACAAAACAATAATACGACAT-----GT-AGC---AGC----A-TACTATA-C--AGTGTAAAAAG--GTGGCTTGAATAC-AGAGA------GT-ACCAAGGG-ACacacagagcgagatttcgatatggataggtaaatatatt
gi|2 : taaaacacacatcgtttcaacttcaagtgaggttccccacgaaattacagttgtttgaaagagagactgggttttagaacaatgtttcagagatacaaataagtggAAAAACAATA----ATTACTGCAT-----GT-AGCCCAAGG----A--AATATATACAGGTGTATAAAAA-GTGGCT-GAATACAGGAGA------ATTACCAAGGGGACAGT-GTCTATTGTGGA--------TG---GGCAAACCCTGTACTTTTCTAAGTATAC-AAAACACTCATTCATTCAGATCAACATACATGTACAAGTAATACAG-AACACT--TCATGTA-----AGC---AGCA-TAC----TAT
gi|9 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaGCTTGAACACAGGAGA------GT-ACCAAGGG-ACGGTTGCCTAT-GCAAAGTCGGATCTGACTG-CAAACT-TGTACT---CTAAGTATACAAAAACAC-CATCC--TCA---CAACGtaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|26 : CCTAT-GCAAAGTCA-TCA-GACTGACAAAC----------------TATAC-AAAACACTCATTCATTCAActcagggtcctgagtccactccgcggccaccgatgtgaactcaggacccctgacgtttgttgagga
gi|5 : AAGTATAC-A-AACACTCGCTCATTCAGATCAACGTACA-ATAAAAGTAATACAG-AACACT--GCATGTA-----G-C---AGCA-TAC----TATAGTAAGTGTAAAAAAGGTG-CTTGAATAC-AGA-GAG-CACCAA-GGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTT-GTAC---TCTATGTATAC-AAAACACTCATTCATTCAAATCAACGTACATACAAGTAATAC---
gi|38 : C-AAAACACTCATTCATTCAAACCAACGTACA-ATAagaacactgcatgtagcagcattactatagtaatagtgaaagggggttttgaatacagagagcaccaagggacggtgcctatgcaaagtcgatctgactggcagact
gi|32 : TTCATTCAGATCAACGTACA-ATAAAAGTAATACAG-AACAATTAACATGTA-----
gi|3 : -ATAGAAACAAAACA---ATAAT--ACATGTA-----G-C---AGCA-TAC----TATAC--AGTGTA-AAAAGGTGGCTTGAGTAC-AGA-GAG-TACCAA-GGGACGGT-GCA-ATGCCAAGTC-GATCAGACTGACAAACTT-GTAC---T-CAAGTATAC-AAAACACTCATTCATTCACATCAACGC--ATA
gi|8 : atgtttatatcaccaatcatggccctcagggggcatttacatttataacagtatgacacataaagtgcatataaaacacacatcgtttcaacttcatgtggggttataatactgtataatgaacccacgaaattacagtttgtttgaaagataaactggttttagagcaatgtttcaatgagatacaaataagttg-ATAGAAACAAAACAATAATACG--ACATGTA-----G-C---AGCA-TAC----TATAC--AGTGTA-AAAAGGTGGCTTGAATAC-AGA-GAG-TACCAA-GGGACacaaaagtatacagaacactgcatgtagcagcatactatagtaaattaaaaaaaggtggcttgaatacagagagtaccaagggacggtgcctatgcaaagtcgatatgactggcaaacttatactct
gi|2 : taaaacacacatcgtttcaacttcaagtgaggttccccacgaaattacagttgtttgaaagagagactgggttttagaacaatgtttcagagatacaaataagtggAAAAACAATA----ATTACT--GCATGTA-----G-CCCAAGGA-AATA---TATA-CAGGTGTATAAAAAGTGGC-TGAATACAGGA-GAATTACCAAGGGGACAGT-GTCTATT----GTG-GATG-----GGCAAACCCTGTACTTTTCTAAGTATAC-AAAACACTCATTCATTCAGATCAACAT--ACA-------------TGTACAAGTAATACAGAACACT-TCATGTAAGCAGCATACTATT
gi|9 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaGCTTGAACAC-AGGAGAG-TACCAA-GGGACGGTTGCCTATGCAAAGTCGGATCTGACT-GCAAACTT-GTAC---TCTAAGTATACAAAAACA-CCATCC--TCA---CAACGaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|26 : CCTATGCAAAGTC--ATCAGACTGACAAAC----------------TATAC-AAAACACTCATTCATTCAActcagggtcctgagtccactccgcggccaccgatgtgaactcaggacccctgacgtttgttgagga
gi|38 : C-AAAACACTCATTCATTCAAACCAACGT--ACA
25 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CACAGCCACGTTTCAGGGGTCCTGAGTCACCTAGTGACCGTGGTCCCACACGCCACGAGGTAGGACTCATGACCCCATGACATTTGTTGAGGA
Unaligned ( gi|13 ): TCCTCACAACGTCAGGGGTCCTGAGTTCACTCGTAGCCGTGGACCGTGGGACCCACGGCCACGAGTGGACTCAGGATCCATGACGTTGTGAG
Unaligned ( gi|14 ): TCCTACACAGACGTCAGGGGTCCTGAGTCCACTCGTGGCCGGTGTCCCACGAGCACGGGTGGACTCAGGACCCTGACGTTCGTGAGG
Unaligned ( gi|15 ): ATCCTCACAACTTAAAGGCCCTTCAGGAGTTCACTCGTCAGTGGACCACAGCCACGAATGGACTCGGGATCCCGGACGTTGTGAGGA
Unaligned ( gi|16 ): CCTCACAACGTTCGGGGTCCGTGAGCCCCACTCGTGGCCGTTCACGGGCCACGACGTGGACTCAGGACCCCTGACGTTGTGAGGA
Unaligned ( gi|17 ): CTCACAACATCAGGGGTCCTGAGTCCACTCGTGGCCGTGATCCCACGGCCACGAGTAGATTCAGAACCCCTGGTGTTGTAAGGA
Unaligned ( gi|18 ): CCTCACATCAAGGGTCCCGAGTACATTTGTAGCTGTGTCCACGGCCACATTAGTGGACTCAGTACCCCTGATGTTGTGAGGA
Unaligned ( gi|19 ): TGCAAAACCTCTACCTCATAACACCAGGGTCCACAGTCACTCTTGGCCCTTGAACTCAGGAACCCTGACATGAGGAT
Unaligned ( gi|20 ): CGTCCTTTCAACGTCAGGGTCCTGGGTCCACAACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|21 ): GTCCTTTCAACGTCAGGGGTCCTGGGTCCACACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|22 ): CCTCACCAACGTCAGGGTCCATCTCTGATCCACATGTGGACATCAGGACTCCCTGAAACGTTTGATGAAGATGA
Unaligned ( gi|23 ): CCTCGCAACGTCAGGGATCCCGAGTCCACTTGTCGCCATGAGTGAACTCGGGACTCCCGATGTTGAGAGGA
Unaligned ( gi|24 ): TCCTCACAACGTCAGGAGTCCGTGGCCGTGGGACACGAGTGGACTCGGGGACCCCTGATGTTGTGAGGA
Unaligned ( gi|25 ): TCCTCACAACGTCAGGGGTCCTGAGTGGACTCAGGACCCCTGACGTTGTGAG
Unaligned ( gi|27 ): TACACAACGTCAGAGGGTCCTGAGTCCACTCGTGGCCAAGTGGGACCTCAA
Unaligned ( gi|28 ): TATCCAAAAGCTCATCACACAGACGAAAATCAAAGTACTGAAGATACTGCG
Unaligned ( gi|29 ): TCCTCACAACGTCAGGGTCATAAGTCCACTTGTGGCCTCAGGACCCCTGAC
Unaligned ( gi|30 ): AACGTCAGGGGCGCCCTGAGTCCACTCATGGTCGTGGGACCCACAGCCACG
Unaligned ( gi|31 ): ACAACAGTCCCACGGCGACGAGTGGACTCAGGACCCCTGACGTTGTGAGG
Unaligned ( gi|33 ): TCCTCACAACGTCAGGGGTCCTGACTCAGGACCCCTTACGTTTTGAGG
Unaligned ( gi|35 ): TCGGGGGTTCCGAGTGGACTCGGGACTCCTGATGTTGTGAGGAT
Unaligned ( gi|36 ): ACGGCCACGAGTGGACTCAGGACCCCTGACATTGTGAGGA
Unaligned ( gi|37 ): GAGTGGACTCACCTAAGACCCCTGACGTTGTGAGGA
Unaligned ( gi|39 ): TCAGGGATCCTGAGTCCACTCGTGGCCGTCCCA
Unaligned ( gi|40 ): GACTCAGGACCCCTGATGTTGTGAGGAT
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 222 2222 11111 000000000000000000000000000000000 111 11 111111 1111 111 444444444444444444444444 111 111 444444 11 111 111 3333333 1 22222222 111 22222 1111 1111 1 11 2 1 1 1 2 2 11 222 3333 7777 4 33333 1
lowQualScore : 222 0000 6 6 6 3 5 77 5 44444 5 555555555555555555555555555555555 222 55 666666 5 2222 000 5 555555555555555555555555 1 1 111 2 6 111 6 6 77 111111 99 11 0 11 8 444 6 2 111 4444444 6 0 0 8 44444444 8 0 0 66 0 8 3 444 5 1 6 0 00000 8 7777 7777 0 2 2 1 3 88 0 66 7 0 3 0 0 1 2 4 0 3 88 111 0000 3 6 1111 77 1 6 0 6 33333 7 6
lowQualScore : ... .... . . . . . .. . ..... . ................................. ... .. ...... . .... ... . ........................ . . ... . . ... . . .. ...... .. .. . .. . ... . . ... ....... . . . . ........ . . . .. . . . ... . . . . ..... . .... .... . . . . . .. . .. . . . . . . . . . . .. ... .... . . .... .. . . . . ..... . .
lowQualScore : 777 8888 7 7 7 0 7 99 7 33333 7 111111111111111111111111111111111 777 00 444444 7 1111 000 7 555555555555555555555555 0 0 777 5 7 777 7 7 99 000000 22 88 8 00 0 000 7 5 777 2222222 7 6 8 0 22222222 0 8 6 00 8 0 8 000 6 0 7 8 00000 0 0000 0000 5 5 5 0 2 33 0 55 3 0 2 0 0 0 5 0 0 0 55 555 0000 0 0 0000 00 0 0 0 0 00000 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA----TGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC------TATA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA-ATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCAT-----GT-AGCAGC----ATACT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTAC---CAATACAATAAATTATTATGTAGCTATCAAATTATT
Reference ( family-7 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATANCGGTATA----TGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACANNATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--GTAC------TNTA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTTAT----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATATATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCAT-----GT-AGCAGC----ATACT----ATAGTAAGTGTAAAAAAGGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATNTGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCA-TACTATAGTAAGTGTAAAAAAGGTGGCTTGAATACAG-AGAGTACCAAGGGACGGT-GCCTATGCAAAGTC-GATNTGACTGGCAAACTTGTACTCTAAGTATAC-AAAACACTCATTCATTCAAATCAACG--TACAAGATACTGTGCAAGNAATACAGNANACT-TCATGTAAGCAGCATACTATT
gi|1 : AGATAC--GTATA----TGTTTAT-TCACCAA-TCAT-GAGCCCT-CAGGGGG--CA-TTTA-----C-ATT----------------------------AT---ATAA--AATACATAATAAAACACA------TATCG-TTTCAACT----TCAGG---TGGGGT-TATA--ATAC------TTTA----T---AATGAACCCCA---TGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT------TAGA--GCAATGTTTCAAAGAGAGACAGATAAGCGGA--TAGA-AGC---AAAACAATAA-TATGACATATAGC---AGCATATATACTGTGCA-GTGTAAACA-GGTGGCTTGAATACA-GAGA------G-CACCAA-GGGACGATGCCTATACAGAGTCGATATGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTACA-ATAAAAGTAATACAGAACACTGTAT-----AT-AGCAGC----ATACT----ATAGTAATTGTAAAAAAAAGTGGCTTGAACACGGAGAGTACCAAGGGACGGTGCCTATGTAAAGTCAATATGACTGGCAAACTTGTACTCTAAGTATACACAACACTCATTCATTCAAATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAACAGCA-TATTATAGTGGGTGTAGAAAAGGTGGCTTGAACACGG-GGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTCGTACTCCAAGTAAAC-AAGACACCCATTCATTCAAATCAACGTATACGAGATACTGTAC---CAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|10 : agctatgtgtaaaaaacaatacgaagaaacgagacacc----TATTTAT-TCATCAA-TCAA-GGTCCCT-CAGGGGG--TA-TGTA-----CAATTCTAGC----------A------------AT---ATAG--TGTATA-TAT---ACACAAGATTTTATGT-TTTCAA-TGAAATCAGGGTATGGGGT-TATA--ATcaa
gi|11 : gttattttggctgtataattactgtgtattttactttGCCCT-CAGGGGG--CA-TTTA-----C-ATT-----------------------------T---ATAACAAGTACAATATAAAACACT------CATAG-TTTCAACA----TCAAG---TGGGGT-TATACTGTAC------TACATGTCT---AATGAACct
gi|2 : ATACCGGTATAA---TGTT-AT-TCACCAAATCATTGGGCCCTTCAGGGGGGACA-ATTATGTAAC-ATT-----------------------------T---TTAA----CACAATATAGAACACG------CATCGTTTTCAACT----TTAAG---T--AGT-TATA--atgtaaaaaaaacaa
gi|2 : CCA---CGAAATTA--GTT-GT---T-TGAAAAGAAGGAAA--GGGTCA-----TAGAAGGCAA--TTTGAAAGA-ATACAA--AAGTGGAGTTAGATAACCAAAAAACAATAATTACTGCATGTAGCCCAAGGAAATA---TATACAGGTGTATAAAAAGTGGC-TGAATACAGGAGA------ATTACCAAGGGGACAGTGTCTATT----GTGGAT--G---GGCAAACCCTGTACTTTTCTAAGTATACAAAACACTCATTCATTCAGATCAACATACATGTACAAGTAATACAGAACACTTCAT-----GTAAGCAGC----ATACTATTAATATTAAGTGTtattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|2 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaAAAAAGGTGGTTTGAATACAG-AGAGT--------------GCCTACACCTAGTC-GATCTGACTGGCAAACTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|26 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctCCTATGCAAAGTC-ATCAGACTGACAAA-C---------------TATACAAAACACTCATTCATTCA
gi|3 : A----TGTTTATATCACCAA-TCAT-GG-CCCT-CAGGGGG--CA-TTTA-----C-ATT----T----------ATAACAGTATGACAC---ATAA--AGTGCAT-ATAAAACACA------CATCG-TTTCAACT----TCATG---TGGGGT-TATA--ATAC------TGTA----T---AATGAACCC-A---CGAAATTACAGTTTGT---T-TG-AAAGA--TAAACTGG-TT-T----TAGA--GCAATGTTTCAATGAGATACAAATAAGTTGA--TAGA-AAC---AAAACAATAA-TAC---ATGTAGC---AGCATA----CTATACA-GTGTAAAAA-GGTGGCTTGAGTACA-GAGA------G-TACCAA-GGGACGGTGCA-ATGCCAAGTCGATCAGACTGACAAA-CTTGTAC---TC-AAGTATACAAAACACTCATTCATTCACATCAACGCATA-ACAAAAGTA-TACAGAACACTGCAT-----GT-AGCAGC----ATACT----ATAGTAAAT-TAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTATACTCTa
gi|32 : TTCATTCAGATCAACGTACAATAAAAGTAATACAGAACAATTAACATGTA
gi|34 : AA-TACGACATGTAGC---AGC----ATACTATACA-GTTTA
gi|38 : CAAAACACTCATTCATTCAAACCAACGTACA-ATAttacaaggaatgac
gi|4 : A--GAAACTGGGTT-T----TAAA--GCAATGTTTCAAAGAGATACAAACAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA----CTATACA-GTGTAAAAAAGGTGGCTTGGACACA-GAGACTCAGAG-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAAACTGACAAT-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTATA-ATAAAAGTAATACAAAACACTGTATGTATAGT-AGCAGCATATATACT----ATAGTAAGTGTAAAAAA-GGTGGTTTGAATACAAAGAGTACCAAGGGATGGTGCCTATGCAAAGTCGATATGACTGACAAACTTATACTTTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAA
gi|5 : AAGTATACAAA-CACTCGCTCATTCAGATCAACGTACA-ATAAAAGTAATACAGAACACTGCAT-----GT-AGCAGC----ATACT----ATAGTAAGTGTAAAAAAGG-TG-CTTGAATACAGAGAGCACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTATGTATACAAAACACTCATTCATTCAAATCAACGTAC-ATACAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTAATAGTGAAAGGGG-GTTTTGAATACAG-AGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATCTGACTGGCAGACTtatatatatgtgaataaataaatacacagagcgagatttcgatatggataggtaaatatatt
gi|6 : AGATAAATATATAAATTTGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTTTA-----C-ATT----CATAACAGTATG------------ATCACATAA--AGTACAATATAAAACACA------CATCG-TTTCAACA----TCAAG---TGGAGTATACAT-GTACATAAAGTATA----TGTAAAAGAACCGTACGTCGATATT--AGTT-GTGCATGTG-TAAAA--GAAACTGGGTCATATGGTAGA--ACAATG
gi|7 : ttctgacctactgacccaaatctacatgcacagtgtttgcataatatcagatcaatatgatactcatTATA----TATTTAT-TCACTAA-TCAT-GGACCCT-CAGGGGG--CA-TTTA-----C-ATT----a
gi|7 : attatatatatataatataataCCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccacgaaattacagttgtttgaaagagaa
gi|8 : attatatatatataatataatatatatatttattcactaatcatggaccctcagggggcatttacatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAAAACACA------CATCG-TTTCAACT----TCAAG---TGAGGT-T---------------------------------CCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAGACTGGGTT-T----TAGA--ACAATGTTTCA--GAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGC----ATACTATACA-GTGT-AAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGAC
gi|9 : GCTTGAACACAGGAGAGTACCAAGGGACGGTTGCCTATGCAAAGTCGGATCTGACT-GCAAACTTGTACTCTAAGTATACAAAAACAC-CATCC--TCA---CAACG--CTCAGGGTCCTG
25 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACAGCCACGTTTCAGGGGTCCTGAGTCACCTAGTGACCGTGGTCCCACACGCCACGAGGTAGGACTCATGACCCCATGACATTTGTTGAGGA
Unaligned ( gi|13 ): TCCTCACAACGTCAGGGGTCCTGAGTTCACTCGTAGCCGTGGACCGTGGGACCCACGGCCACGAGTGGACTCAGGATCCATGACGTTGTGAG
Unaligned ( gi|14 ): TCCTACACAGACGTCAGGGGTCCTGAGTCCACTCGTGGCCGGTGTCCCACGAGCACGGGTGGACTCAGGACCCTGACGTTCGTGAGG
Unaligned ( gi|15 ): ATCCTCACAACTTAAAGGCCCTTCAGGAGTTCACTCGTCAGTGGACCACAGCCACGAATGGACTCGGGATCCCGGACGTTGTGAGGA
Unaligned ( gi|16 ): CCTCACAACGTTCGGGGTCCGTGAGCCCCACTCGTGGCCGTTCACGGGCCACGACGTGGACTCAGGACCCCTGACGTTGTGAGGA
Unaligned ( gi|17 ): CTCACAACATCAGGGGTCCTGAGTCCACTCGTGGCCGTGATCCCACGGCCACGAGTAGATTCAGAACCCCTGGTGTTGTAAGGA
Unaligned ( gi|18 ): CCTCACATCAAGGGTCCCGAGTACATTTGTAGCTGTGTCCACGGCCACATTAGTGGACTCAGTACCCCTGATGTTGTGAGGA
Unaligned ( gi|19 ): TGCAAAACCTCTACCTCATAACACCAGGGTCCACAGTCACTCTTGGCCCTTGAACTCAGGAACCCTGACATGAGGAT
Unaligned ( gi|20 ): CGTCCTTTCAACGTCAGGGTCCTGGGTCCACAACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|21 ): GTCCTTTCAACGTCAGGGGTCCTGGGTCCACACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|22 ): CCTCACCAACGTCAGGGTCCATCTCTGATCCACATGTGGACATCAGGACTCCCTGAAACGTTTGATGAAGATGA
Unaligned ( gi|23 ): CCTCGCAACGTCAGGGATCCCGAGTCCACTTGTCGCCATGAGTGAACTCGGGACTCCCGATGTTGAGAGGA
Unaligned ( gi|24 ): TCCTCACAACGTCAGGAGTCCGTGGCCGTGGGACACGAGTGGACTCGGGGACCCCTGATGTTGTGAGGA
Unaligned ( gi|25 ): TCCTCACAACGTCAGGGGTCCTGAGTGGACTCAGGACCCCTGACGTTGTGAG
Unaligned ( gi|27 ): TACACAACGTCAGAGGGTCCTGAGTCCACTCGTGGCCAAGTGGGACCTCAA
Unaligned ( gi|28 ): TATCCAAAAGCTCATCACACAGACGAAAATCAAAGTACTGAAGATACTGCG
Unaligned ( gi|29 ): TCCTCACAACGTCAGGGTCATAAGTCCACTTGTGGCCTCAGGACCCCTGAC
Unaligned ( gi|30 ): AACGTCAGGGGCGCCCTGAGTCCACTCATGGTCGTGGGACCCACAGCCACG
Unaligned ( gi|31 ): ACAACAGTCCCACGGCGACGAGTGGACTCAGGACCCCTGACGTTGTGAGG
Unaligned ( gi|33 ): TCCTCACAACGTCAGGGGTCCTGACTCAGGACCCCTTACGTTTTGAGG
Unaligned ( gi|35 ): TCGGGGGTTCCGAGTGGACTCGGGACTCCTGATGTTGTGAGGAT
Unaligned ( gi|36 ): ACGGCCACGAGTGGACTCAGGACCCCTGACATTGTGAGGA
Unaligned ( gi|37 ): GAGTGGACTCACCTAAGACCCCTGACGTTGTGAGGA
Unaligned ( gi|39 ): TCAGGGATCCTGAGTCCACTCGTGGCCGTCCCA
Unaligned ( gi|40 ): GACTCAGGACCCCTGATGTTGTGAGGAT
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 111111 11111 000000000000000000000000000000000 111 111111 1111 111 111 333333333333333333 111 111 111111 11 111 111 22222 22222222 111 22222 1111 1111 11 1 1 1 1 1 1 11 222 11
lowQualScore : 88 6 999999 6 6 6 3 5 77 5 44444 5 555555555555555555555555555555555 222 3 666666 5 2222 000 5 555 777777777777777777 1 1 111 2 6 111 6 6 77 666666 99 11 0 11 8 444 6 2 111 77777 6 7 0 0 8 44444444 8 0 0 66 0 8 3 444 5 1 6 0 8 00000 7777 7777 3 3 2 3 88 5 22 7 0 6 0 2 0 2 0 1 5 5 88 111 88 1 1
lowQualScore : .. . ...... . . . . . .. . ..... . ................................. ... . ...... . .... ... . ... .................. . . ... . . ... . . .. ...... .. .. . .. . ... . . ... ..... . . . . . ........ . . . .. . . . ... . . . . . ..... .... .... . . . . .. . .. . . . . . . . . . . . .. ... .. . .
lowQualScore : 33 7 222222 7 7 7 0 7 99 7 33333 7 111111111111111111111111111111111 777 5 444444 7 1111 000 7 000 444444444444444444 0 0 777 5 7 777 7 7 99 222222 22 88 8 00 0 000 7 5 777 55555 7 3 8 8 0 22222222 0 8 6 00 8 0 8 000 6 0 7 8 0 00000 0000 0000 2 2 5 2 33 5 00 3 0 5 0 0 0 5 7 0 5 0 55 555 55 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC------TATA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA-ATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
Reference ( family-7 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC------TATA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA-ATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|1 : AGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GAGCCCT-CAGGGGG--CA-TTTA-----C-ATT----------------------------AT---ATAA--AATACATAATAAAACACA------TATCG-TTTCAACT----TCAGG---TGGGGT-TATA--ATAC------TTTA----T---AATGAACCCCA---TGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T-----AGA--GCAATGTTTCAAAGAGAGACAGATAAGCGGA--TAGA-AGC---AAAACAATAA-TATGACATATAGC---AGCATATATACTGTGCA-GTGT-AAACAGGTGGCTTGAATACA-GAGA------G-CACCAA-GGGACGATGCCTATACAGAGTCGATATGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTACA-ATAAAAGTAATACAGAACACTGTATAT-A-----GCAGCATA----CT----ATAGTAATTGTAAAAAAAAGTGGCTTGAACACGGAGAGTACCAAGGGACGGTGCCTATGTAAAGTCAATATGACTGGCAAACTTGTACTCTAAGTATACACAACACTCATTCATTCAAATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAACAGCA-TATTATAGTGGGTGTAGAAAAGGTGGCTTGAACACGG-GGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTCGTACTCCAAGTAAAC-AAGACACCCATTCATTCAAATCAACGTATACGAGATACTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|10 : agctatgtgtaaaaaacaatacgaagaaacgagacacc-T------ATTTAT-TCATCAA-TCAA-GGTCCCT-CAGGGGG--TA-TGTA-----CAATTCTAGC----------A------------AT---ATAG--TGTAT-ATAT---ACACAAGATTTTATGT-TTTCAA-TGAAATCAGGGTATGGGGT-TATA--ATcaa
gi|11 : gttattttggctgtataattactgtgtattttactttGCCCT-CAGGGGG--CA-TTTA-----C-ATT-----------------------------T---ATAACAAGTACAATATAAAACACT------CATAG-TTTCAACA----TCAAG---TGGGGT-TATACTGTAC------TACATGTCT---AATGAACct
gi|2 : ATACCGGTATAAT------GTT-AT-TCACCAAATCATTGGGCCCTTCAGGGGGGACA-ATTATGTAAC-ATT-----------------------------T---TTAA----CACAATATAGAACACG------CATCGTTTTCAACT----TTAAG---T--AGT-TAT---ATAT------TAatgtaaaaaaaacaa
gi|2 : CCA---CGAAATTA--GTT-GT---T-TGAAAAGAAGGAAA--GGGTC-A----TAGAAGGCAA--TTTGAAAGA-ATACAA--AAGTGGAGTTAGATAACCAAAAAACAATAATTACTGCATGTAGCCCAAGGA-A-ATA-TATACAGGTGTATAAAAAGTGGC-TGAATACAGGAGA------ATTACCAAGGGGACAGTGTCTATT----GTGGAT--G---GGCAAACCCTGTACTTTTCTAAGTATACAAAACACTCATTCATTCAGATCAACATACATGTACAAGTAATACAGAACACTTCATGTAA-----GCAGCATA----CTATTAATATTAAGTGTacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|2 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaAAAAAGGTGGTTTGAATACAG-AGAG-------------T-GCCTACACCTAGTC-GATCTGACTGGCAAACTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|26 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctCCTATGCAAAGTC-ATCAGACTGACAAA-C---------------TATACAAAACACTCATTCATTCA
gi|3 : A-T------GTTTATATCACCAA-TCAT-GG-CCCT-CAGGGGG--CA-TTTA-----C-ATT----T----------ATAACAGTATGACAC---ATAA--AGTGCA-TATAAAACACA------CATCG-TTTCAACT----TCATG---TGGGGT-TATA--ATAC------TGTA----T---AATGAACCC-A---CGAAATTACAGTTTGT---T-TG-AAAGA--TAAACTGG-TT-T----TAGA--GCAATGTTTCAATGAGATACAAATAAGTTGA--TAGA-AAC---AAAACAATAA-TAC---ATGTAGC---AGCATA----CTATACA-GTGTAAAAA-GGTGGCTTGAGTACA-GAGA------G-TACCAA-GGGACGGTGCA-ATGCCAAGTCGATCAGACTGACAAA-CTTGTAC---TC-AAGTATACAAAACACTCATTCATTCACATCAACGCATA-ACAAAAGTA-TACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAAT-TAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTATACTCTa
gi|32 : TTCATTCAGATCAACGTACAATAAAAGTAATACAGAACAATTAACATGTA
gi|34 : AA-TACGACATGTAGC---AGC----ATACTATACA-GTTTA
gi|38 : CAAAACACTCATTCATTCAAACCAACGTACA-ATAttacaaggaatgac
gi|4 : A--GAAACTGGGTT-T----TAAA--GCAATGTTTCAAAGAGATACAAACAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA----CTATACA-GTGTAAAAAAGGTGGCTTGGACACA-GAGACTCAGAG-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAAACTGACAAT-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTATA-ATAAAAGTAATACAAAACACTGTATGT-ATAGTAGCAGCATATATACT----ATAGTAAGTGTAAAA-AAGGTGGTTTGAATACAAAGAGTACCAAGGGATGGTGCCTATGCAAAGTCGATATGACTGACAAACTTATACTTTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAA
gi|5 : AAGTATACAAA-CACTCGCTCATTCAGATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAA-GGTG-CTTGAATACAGAGAGCACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTATGTATACAAAACACTCATTCATTCAAATCAACGTAC-ATACAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTAATAGTGAAAGGGG-GTTTTGAATACAG-AGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATCTGACTGGCAGACTtatatatatgtgaataaataaatacacagagcgagatttcgatatggataggtaaatatatt
gi|6 : AGATAA--ATATA-TAAATTTGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTTTA-----C-ATT----CATAACAGTATG------------ATCACATAA--AGTACAATATAAAACACA------CATCG-TTTCAACA----TCAAG---TGGAGTATACAT-GTACATAAAGTATA----TGTAAAAGAACCGTACGTCGATATT--AGTT-GTGCATGTG-TAAAA--GAAACTGGGTCATATGGTAGA--ACAATG
gi|7 : ttctgacctactgacccaaatctacatgcacagtgtttgcataatatcagatcaatatgatactcatTATA-T------ATTTAT-TCACTAA-TCAT-GGACCCT-CAGGGGG--CA-TTTA-----C-ATT----a
gi|7 : attatatatatataatataataCCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccacgaaattacagttgtttgaaagagaa
gi|8 : attatatatatataatataatatatatatttattcactaatcatggaccctcagggggcatttacatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAAAACACA------CATCG-TTTCAACT----TCAAG---TGAGGT-T---------------------------------CCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAGACTGGGTT-T----TAGA--ACAATGTTTCA--GAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGC----ATACTATACA-GTGT-AAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGAC
gi|9 : GCTTGAACACAGGAGAGTACCAAGGGACGGTTGCCTATGCAAAGTCGGATCTGACT-GCAAACTTGTACTCTAAGTATACAAAAACA-CCATCC--TCA---CAACG--CTCAGGGTCCTG
25 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACAGCCACGTTTCAGGGGTCCTGAGTCACCTAGTGACCGTGGTCCCACACGCCACGAGGTAGGACTCATGACCCCATGACATTTGTTGAGGA
Unaligned ( gi|13 ): TCCTCACAACGTCAGGGGTCCTGAGTTCACTCGTAGCCGTGGACCGTGGGACCCACGGCCACGAGTGGACTCAGGATCCATGACGTTGTGAG
Unaligned ( gi|14 ): TCCTACACAGACGTCAGGGGTCCTGAGTCCACTCGTGGCCGGTGTCCCACGAGCACGGGTGGACTCAGGACCCTGACGTTCGTGAGG
Unaligned ( gi|15 ): ATCCTCACAACTTAAAGGCCCTTCAGGAGTTCACTCGTCAGTGGACCACAGCCACGAATGGACTCGGGATCCCGGACGTTGTGAGGA
Unaligned ( gi|16 ): CCTCACAACGTTCGGGGTCCGTGAGCCCCACTCGTGGCCGTTCACGGGCCACGACGTGGACTCAGGACCCCTGACGTTGTGAGGA
Unaligned ( gi|17 ): CTCACAACATCAGGGGTCCTGAGTCCACTCGTGGCCGTGATCCCACGGCCACGAGTAGATTCAGAACCCCTGGTGTTGTAAGGA
Unaligned ( gi|18 ): CCTCACATCAAGGGTCCCGAGTACATTTGTAGCTGTGTCCACGGCCACATTAGTGGACTCAGTACCCCTGATGTTGTGAGGA
Unaligned ( gi|19 ): TGCAAAACCTCTACCTCATAACACCAGGGTCCACAGTCACTCTTGGCCCTTGAACTCAGGAACCCTGACATGAGGAT
Unaligned ( gi|20 ): CGTCCTTTCAACGTCAGGGTCCTGGGTCCACAACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|21 ): GTCCTTTCAACGTCAGGGGTCCTGGGTCCACACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|22 ): CCTCACCAACGTCAGGGTCCATCTCTGATCCACATGTGGACATCAGGACTCCCTGAAACGTTTGATGAAGATGA
Unaligned ( gi|23 ): CCTCGCAACGTCAGGGATCCCGAGTCCACTTGTCGCCATGAGTGAACTCGGGACTCCCGATGTTGAGAGGA
Unaligned ( gi|24 ): TCCTCACAACGTCAGGAGTCCGTGGCCGTGGGACACGAGTGGACTCGGGGACCCCTGATGTTGTGAGGA
Unaligned ( gi|25 ): TCCTCACAACGTCAGGGGTCCTGAGTGGACTCAGGACCCCTGACGTTGTGAG
Unaligned ( gi|27 ): TACACAACGTCAGAGGGTCCTGAGTCCACTCGTGGCCAAGTGGGACCTCAA
Unaligned ( gi|28 ): TATCCAAAAGCTCATCACACAGACGAAAATCAAAGTACTGAAGATACTGCG
Unaligned ( gi|29 ): TCCTCACAACGTCAGGGTCATAAGTCCACTTGTGGCCTCAGGACCCCTGAC
Unaligned ( gi|30 ): AACGTCAGGGGCGCCCTGAGTCCACTCATGGTCGTGGGACCCACAGCCACG
Unaligned ( gi|31 ): ACAACAGTCCCACGGCGACGAGTGGACTCAGGACCCCTGACGTTGTGAGG
Unaligned ( gi|33 ): TCCTCACAACGTCAGGGGTCCTGACTCAGGACCCCTTACGTTTTGAGG
Unaligned ( gi|35 ): TCGGGGGTTCCGAGTGGACTCGGGACTCCTGATGTTGTGAGGAT
Unaligned ( gi|36 ): ACGGCCACGAGTGGACTCAGGACCCCTGACATTGTGAGGA
Unaligned ( gi|37 ): GAGTGGACTCACCTAAGACCCCTGACGTTGTGAGGA
Unaligned ( gi|39 ): TCAGGGATCCTGAGTCCACTCGTGGCCGTCCCA
Unaligned ( gi|40 ): GACTCAGGACCCCTGATGTTGTGAGGAT
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 111111 11111 000000000000000000000000000000000 111 111111 1111 111 111 333333333333333333 111 111 111111 11 111 111 22222 22222222 111 22222 1111 1111 11 1 1 1 1 1 1 11 222 11
lowQualScore : 88 6 999999 6 6 6 3 5 77 5 44444 5 555555555555555555555555555555555 222 3 666666 5 2222 000 5 555 777777777777777777 1 1 111 2 6 111 6 6 77 666666 99 11 0 11 8 444 6 2 111 77777 6 7 0 0 8 44444444 8 0 0 66 0 8 3 444 5 1 6 0 8 00000 7777 7777 3 3 2 3 88 5 22 7 0 6 0 2 0 2 0 1 5 5 88 111 88 1 1
lowQualScore : .. . ...... . . . . . .. . ..... . ................................. ... . ...... . .... ... . ... .................. . . ... . . ... . . .. ...... .. .. . .. . ... . . ... ..... . . . . . ........ . . . .. . . . ... . . . . . ..... .... .... . . . . .. . .. . . . . . . . . . . . .. ... .. . .
lowQualScore : 33 7 222222 7 7 7 0 7 99 7 33333 7 111111111111111111111111111111111 777 5 444444 7 1111 000 7 000 444444444444444444 0 0 777 5 7 777 7 7 99 222222 22 88 8 00 0 000 7 5 777 55555 7 3 8 8 0 22222222 0 8 6 00 8 0 8 000 6 0 7 8 0 00000 0000 0000 2 2 5 2 33 5 00 3 0 5 0 0 0 5 7 0 5 0 55 555 55 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC------TATA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA-ATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
Reference ( family-7 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC------TATA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA-ATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|1 : AGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GAGCCCT-CAGGGGG--CA-TTTA-----C-ATT----------------------------AT---ATAA--AATACATAATAAAACACA------TATCG-TTTCAACT----TCAGG---TGGGGT-TATA--ATAC------TTTA----T---AATGAACCCCA---TGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T-----AGA--GCAATGTTTCAAAGAGAGACAGATAAGCGGA--TAGA-AGC---AAAACAATAA-TATGACATATAGC---AGCATATATACTGTGCA-GTGT-AAACAGGTGGCTTGAATACA-GAGA------G-CACCAA-GGGACGATGCCTATACAGAGTCGATATGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTACA-ATAAAAGTAATACAGAACACTGTATAT-A-----GCAGCATA----CT----ATAGTAATTGTAAAAAAAAGTGGCTTGAACACGGAGAGTACCAAGGGACGGTGCCTATGTAAAGTCAATATGACTGGCAAACTTGTACTCTAAGTATACACAACACTCATTCATTCAAATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAACAGCA-TATTATAGTGGGTGTAGAAAAGGTGGCTTGAACACGG-GGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTCGTACTCCAAGTAAAC-AAGACACCCATTCATTCAAATCAACGTATACGAGATACTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|10 : agctatgtgtaaaaaacaatacgaagaaacgagacacc-T------ATTTAT-TCATCAA-TCAA-GGTCCCT-CAGGGGG--TA-TGTA-----CAATTCTAGC----------A------------AT---ATAG--TGTAT-ATAT---ACACAAGATTTTATGT-TTTCAA-TGAAATCAGGGTATGGGGT-TATA--ATcaa
gi|11 : gttattttggctgtataattactgtgtattttactttGCCCT-CAGGGGG--CA-TTTA-----C-ATT-----------------------------T---ATAACAAGTACAATATAAAACACT------CATAG-TTTCAACA----TCAAG---TGGGGT-TATACTGTAC------TACATGTCT---AATGAACct
gi|2 : ATACCGGTATAAT------GTT-AT-TCACCAAATCATTGGGCCCTTCAGGGGGGACA-ATTATGTAAC-ATT-----------------------------T---TTAA----CACAATATAGAACACG------CATCGTTTTCAACT----TTAAG---T--AGT-TAT---ATAT------TAatgtaaaaaaaacaa
gi|2 : CCA---CGAAATTA--GTT-GT---T-TGAAAAGAAGGAAA--GGGTC-A----TAGAAGGCAA--TTTGAAAGA-ATACAA--AAGTGGAGTTAGATAACCAAAAAACAATAATTACTGCATGTAGCCCAAGGA-A-ATA-TATACAGGTGTATAAAAAGTGGC-TGAATACAGGAGA------ATTACCAAGGGGACAGTGTCTATT----GTGGAT--G---GGCAAACCCTGTACTTTTCTAAGTATACAAAACACTCATTCATTCAGATCAACATACATGTACAAGTAATACAGAACACTTCATGTAA-----GCAGCATA----CTATTAATATTAAGTGTacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|2 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaAAAAAGGTGGTTTGAATACAG-AGAG-------------T-GCCTACACCTAGTC-GATCTGACTGGCAAACTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|26 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctCCTATGCAAAGTC-ATCAGACTGACAAA-C---------------TATACAAAACACTCATTCATTCA
gi|3 : A-T------GTTTATATCACCAA-TCAT-GG-CCCT-CAGGGGG--CA-TTTA-----C-ATT----T----------ATAACAGTATGACAC---ATAA--AGTGCA-TATAAAACACA------CATCG-TTTCAACT----TCATG---TGGGGT-TATA--ATAC------TGTA----T---AATGAACCC-A---CGAAATTACAGTTTGT---T-TG-AAAGA--TAAACTGG-TT-T----TAGA--GCAATGTTTCAATGAGATACAAATAAGTTGA--TAGA-AAC---AAAACAATAA-TAC---ATGTAGC---AGCATA----CTATACA-GTGTAAAAA-GGTGGCTTGAGTACA-GAGA------G-TACCAA-GGGACGGTGCA-ATGCCAAGTCGATCAGACTGACAAA-CTTGTAC---TC-AAGTATACAAAACACTCATTCATTCACATCAACGCATA-ACAAAAGTA-TACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAAT-TAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTATACTCTa
gi|32 : TTCATTCAGATCAACGTACAATAAAAGTAATACAGAACAATTAACATGTA
gi|34 : AA-TACGACATGTAGC---AGC----ATACTATACA-GTTTA
gi|38 : CAAAACACTCATTCATTCAAACCAACGTACA-ATAttacaaggaatgac
gi|4 : A--GAAACTGGGTT-T----TAAA--GCAATGTTTCAAAGAGATACAAACAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA----CTATACA-GTGTAAAAAAGGTGGCTTGGACACA-GAGACTCAGAG-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAAACTGACAAT-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTATA-ATAAAAGTAATACAAAACACTGTATGT-ATAGTAGCAGCATATATACT----ATAGTAAGTGTAAAA-AAGGTGGTTTGAATACAAAGAGTACCAAGGGATGGTGCCTATGCAAAGTCGATATGACTGACAAACTTATACTTTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAA
gi|5 : AAGTATACAAA-CACTCGCTCATTCAGATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAA-GGTG-CTTGAATACAGAGAGCACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTATGTATACAAAACACTCATTCATTCAAATCAACGTAC-ATACAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTAATAGTGAAAGGGG-GTTTTGAATACAG-AGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATCTGACTGGCAGACTtatatatatgtgaataaataaatacacagagcgagatttcgatatggataggtaaatatatt
gi|6 : AGATAA--ATATA-TAAATTTGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTTTA-----C-ATT----CATAACAGTATG------------ATCACATAA--AGTACAATATAAAACACA------CATCG-TTTCAACA----TCAAG---TGGAGTATACAT-GTACATAAAGTATA----TGTAAAAGAACCGTACGTCGATATT--AGTT-GTGCATGTG-TAAAA--GAAACTGGGTCATATGGTAGA--ACAATG
gi|7 : ttctgacctactgacccaaatctacatgcacagtgtttgcataatatcagatcaatatgatactcatTATA-T------ATTTAT-TCACTAA-TCAT-GGACCCT-CAGGGGG--CA-TTTA-----C-ATT----a
gi|7 : attatatatatataatataataCCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccacgaaattacagttgtttgaaagagaa
gi|8 : attatatatatataatataatatatatatttattcactaatcatggaccctcagggggcatttacatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAAAACACA------CATCG-TTTCAACT----TCAAG---TGAGGT-T---------------------------------CCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAGACTGGGTT-T----TAGA--ACAATGTTTCA--GAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGC----ATACTATACA-GTGT-AAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGAC
gi|9 : GCTTGAACACAGGAGAGTACCAAGGGACGGTTGCCTATGCAAAGTCGGATCTGACT-GCAAACTTGTACTCTAAGTATACAAAAACA-CCATCC--TCA---CAACG--CTCAGGGTCCTG
blockSeqs : CG A AAATTT A A T T T GA T TGTAA A CATAACAGTATGATCAC CAA A AGATTT T GAAA GTA A ACT ATAAAGTATATGTA T C CGT C T GCA G A AG ATATGG AG AA GT T CAA T T CCA AAA G A G CTCAGAG G CA C C TTT T G T A TAGTA TATA ATTA A A G A TA T TA T G C T C G G T A . . . . T C
blockSeqs : . . . . . . G . . . . . TATAACAGTATGACAC T A . . . . . AT TACATGTCT T T . C . . . . . A . AT . . . . G . ATA . A . AT . CA . T . T C . . . . . A A G A . . . T . T . G
blockSeqs : . . . . . G . . . . . CTAGCAAT A A . . . . . A TGTAT A C . C . . . . . T . AA . . . . G . ATA . A . G . CA . T . . A . . . . . . . . . . . . T . .
blockSeqs : . . . . . G . . . . . T A A . . . . . A . . C . . . . . . . T . . . . . . G . A . A . G . . . . . . T . . . . .
blockSeqs : . . . . . A . . . . . T . . . . . . . . . . . . . . . . T . . . . A . . G .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : CTAGCAAC************************* TGTT************** ATA**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATT----C----------G------------AT---ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC------TATA----T---AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA-ATACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CA-TTTA-----C-ATTCTAGCAAC-------------------------ATAA--AGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATACTGTT--------------AATGAACCCCA---CGAAATTACAGTT-GT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA--TACTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
25 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACAGCCACGTTTCAGGGGTCCTGAGTCACCTAGTGACCGTGGTCCCACACGCCACGAGGTAGGACTCATGACCCCATGACATTTGTTGAGGA
Unaligned ( gi|13 ): TCCTCACAACGTCAGGGGTCCTGAGTTCACTCGTAGCCGTGGACCGTGGGACCCACGGCCACGAGTGGACTCAGGATCCATGACGTTGTGAG
Unaligned ( gi|14 ): TCCTACACAGACGTCAGGGGTCCTGAGTCCACTCGTGGCCGGTGTCCCACGAGCACGGGTGGACTCAGGACCCTGACGTTCGTGAGG
Unaligned ( gi|15 ): ATCCTCACAACTTAAAGGCCCTTCAGGAGTTCACTCGTCAGTGGACCACAGCCACGAATGGACTCGGGATCCCGGACGTTGTGAGGA
Unaligned ( gi|16 ): CCTCACAACGTTCGGGGTCCGTGAGCCCCACTCGTGGCCGTTCACGGGCCACGACGTGGACTCAGGACCCCTGACGTTGTGAGGA
Unaligned ( gi|17 ): CTCACAACATCAGGGGTCCTGAGTCCACTCGTGGCCGTGATCCCACGGCCACGAGTAGATTCAGAACCCCTGGTGTTGTAAGGA
Unaligned ( gi|18 ): CCTCACATCAAGGGTCCCGAGTACATTTGTAGCTGTGTCCACGGCCACATTAGTGGACTCAGTACCCCTGATGTTGTGAGGA
Unaligned ( gi|19 ): TGCAAAACCTCTACCTCATAACACCAGGGTCCACAGTCACTCTTGGCCCTTGAACTCAGGAACCCTGACATGAGGAT
Unaligned ( gi|20 ): CGTCCTTTCAACGTCAGGGTCCTGGGTCCACAACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|21 ): GTCCTTTCAACGTCAGGGGTCCTGGGTCCACACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|22 ): CCTCACCAACGTCAGGGTCCATCTCTGATCCACATGTGGACATCAGGACTCCCTGAAACGTTTGATGAAGATGA
Unaligned ( gi|23 ): CCTCGCAACGTCAGGGATCCCGAGTCCACTTGTCGCCATGAGTGAACTCGGGACTCCCGATGTTGAGAGGA
Unaligned ( gi|24 ): TCCTCACAACGTCAGGAGTCCGTGGCCGTGGGACACGAGTGGACTCGGGGACCCCTGATGTTGTGAGGA
Unaligned ( gi|25 ): TCCTCACAACGTCAGGGGTCCTGAGTGGACTCAGGACCCCTGACGTTGTGAG
Unaligned ( gi|27 ): TACACAACGTCAGAGGGTCCTGAGTCCACTCGTGGCCAAGTGGGACCTCAA
Unaligned ( gi|28 ): TATCCAAAAGCTCATCACACAGACGAAAATCAAAGTACTGAAGATACTGCG
Unaligned ( gi|29 ): TCCTCACAACGTCAGGGTCATAAGTCCACTTGTGGCCTCAGGACCCCTGAC
Unaligned ( gi|30 ): AACGTCAGGGGCGCCCTGAGTCCACTCATGGTCGTGGGACCCACAGCCACG
Unaligned ( gi|31 ): ACAACAGTCCCACGGCGACGAGTGGACTCAGGACCCCTGACGTTGTGAGG
Unaligned ( gi|33 ): TCCTCACAACGTCAGGGGTCCTGACTCAGGACCCCTTACGTTTTGAGG
Unaligned ( gi|35 ): TCGGGGGTTCCGAGTGGACTCGGGACTCCTGATGTTGTGAGGAT
Unaligned ( gi|36 ): ACGGCCACGAGTGGACTCAGGACCCCTGACATTGTGAGGA
Unaligned ( gi|37 ): GAGTGGACTCACCTAAGACCCCTGACGTTGTGAGGA
Unaligned ( gi|39 ): TCAGGGATCCTGAGTCCACTCGTGGCCGTCCCA
Unaligned ( gi|40 ): GACTCAGGACCCCTGATGTTGTGAGGAT
Alignments
lowQualScore : 11 111111 777777777777777 1111 111111 1111 111 11 666666666666666 111 111 111111 11 111 111 22 22222222 111 22222 1111 1111 11 1 1 1 1 1 1 11 222 11
lowQualScore : 88 6 999999 6 6 6 3 5 77 5 5 333333333333333 4444 3 3 666666 5 2222 000 5 33 888888888888888 1 111 2 6 111 6 6 77 666666 99 11 0 11 8 444 6 111 22 99 6 7 0 0 8 44444444 8 0 0 66 0 8 3 444 5 1 6 0 8 00000 7777 7777 3 3 2 3 88 5 22 7 0 6 0 2 0 2 0 1 5 5 88 111 88 1 1
lowQualScore : .. . ...... . . . . . .. . . ............... .... . . ...... . .... ... . .. ............... . ... . . ... . . .. ...... .. .. . .. . ... . ... .. .. . . . . . ........ . . . .. . . . ... . . . . . ..... .... .... . . . . .. . .. . . . . . . . . . . . .. ... .. . .
lowQualScore : 33 7 222222 7 7 7 0 7 99 7 7 000000000000000 2222 5 5 444444 7 1111 000 7 66 666666666666666 0 777 5 7 777 7 7 99 222222 22 88 8 00 0 000 7 777 88 22 7 3 8 8 0 22222222 0 8 6 00 8 0 8 000 6 0 7 8 0 00000 0000 0000 2 2 5 2 33 5 00 3 0 5 0 0 0 5 7 0 5 0 55 555 55 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTT-AC-ATTC-TAGCA--------ACAT----AAAGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC---A------TGTATAATGAACCCCA---CGAAATTACAG-TTGT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCA-ATA--CTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
Reference ( family-7 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTT-AC-ATTC-TAGCA--------ACAT----AAAGTACAATATAAAACACA------CATCG-TTTCAACT----TCAAG---TGGGGT-TATA--ATAC----------TGT-TAATGAACCCCA---CGAAATTACAG-TTGT---T-TG-AAAGA--GAAACTGGGTT-T----TAGA--GCAATGTTTCAAAGAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATATA--CTATACA-GTGTAAAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCANATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTGGNNGTGAAAAAGGTGGCTTGAACACAG-AGAGCACCAAGGGACGGT-GCCTACGCAAAGTC-GATCTGACTGGCAAACTCGTACTCCAAGTANACAAAGACACCCATCCATTCAAATCAACGTACNCGGGGTNCTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|1 : AGATAC--GTATA-T------GTTTAT-TCACCAA-TCAT-GAGCCCT-CAGGGGG--CATTT-AC-ATT---------------ATAT----AAAATACATAATAAAACACA------TATCG-TTTCAACT----TCAGG---TGGGGT-TATA--ATAC----------TTTATAATGAACCCCA---TGAAATTACAG-TTGT---T-TG-AAAGA--GAAACTGGGTT-T-----AGA--GCAATGTTTCAAAGAGAGACAGATAAGCGGA--TAGA-AGC---AAAACAATAA-TATGACATATAGC---AGCATATATACTGTGCA-GTGTAAACA-GGTGGCTTGAATACA-GAGA------G-CACCAA-GGGACGATGCCTATACAGAGTCGATATGACTGACAAA-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTACA-ATAAAAGTAATACAGAACACTGTATAT-A-----GCAGCATA----CT----ATAGTAATTGTAAAAAAAAGTGGCTTGAACACGGAGAGTACCAAGGGACGGTGCCTATGTAAAGTCAATATGACTGGCAAACTTGTACTCTAAGTATACACAACACTCATTCATTCAAATCAACGTACAATAAAAGTAATACAGAACACT--GCATGTAACAGCA-TATTATAGTGGGTGTAGAAAAGGTGGCTTGAACACGG-GGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATATGACTGGCAAACTCGTACTCCAAGTAAAC-AAGACACCCATTCATTCAAATCAACGTATACGAGATACTGTACCAATACAATAAATTATTATGTAGCTATCAAATTATT
gi|10 : agctatgtgtaaaaaacaatacgaagaaacgagacacc-T------ATTTAT-TCATCAA-TCAA-GGTCCCT-CAGGGGG--TATGT-ACAATTC-TAGCA--------ATAT----AGTGTAT-ATAT---ACACAAGATTTTATGT-TTTCAA-TGAAATCAGGGTATGGGGT-TATA--ATcaa
gi|11 : gttattttggctgtataattactgtgtattttactttGCCCT-CAGGGGG--CATTT-AC-ATT--TA-TA--------ACA-------AGTACAATATAAAACACT------CATAG-TTTCAACA----TCAAG---TGGGGT-TATACTGTACTACA------TGTCTAATGAACct
gi|2 : ATACCGGTATAAT------GTT-AT-TCACCAAATCATTGGGCCCTTCAGGGGGGACAATT-AT--------GTA--------ACATTTTTAA--CACAATATAGAACACG------CATCGTTTTCAACT----TTAAG---T--AGT-TATA--atgtaaaaaaaacaa
gi|2 : CCA---CGAAATTA--G-TTGT---T-TGAAAAGAAGGAAA--GGGTC-A----TAGAAGGCAA--TTTGAAAGA-ATACAA--AAGTGGAGTTAGATAACCAAAAAACAATAATTACTGCATGTAGCCCAAGGAAATA---TATACAGGTGTATAAAAAGTGGC-TGAATACAGGAGA------ATTACCAAGGGGACAGTGTCTATT----GTGGAT--G---GGCAAACCCTGTACTTTTCTAAGTATACAAAACACTCATTCATTCAGATCAACATACATGTACAAGTAATACAGAACACTTCATGTAA-----GCAGCATA----CTATTAATATTAAGTGTtattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|2 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaAAAAAGGTGGTTTGAATACAG-AGAG-------------T-GCCTACACCTAGTC-GATCTGACTGGCAAACTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctaaaaaggtggtttgaatacagagagtgcctacacctagtcgatctgactggcaaacttgt
gi|26 : ataccggtataatgttattcaccaaatcattgggcccttcaggggggacaattatgtaacatttttaacacaatatagaacacgcatcgttttcaactttaagtagttatatattaacatggataaaatggaatatgtataataaaaaaaaaaataaaaaaataaaaaaaaataaccacgaaattagttgtttgaaaagaaggaaagggtcatagaaggcaatttgaaagaatacaaaagtggagttagataaccaaaaaacaataattactgcatgtagcccaaggaaatatatacaggtgtataaaaagtggctgaatacaggagaattaccaaggggacagtgtctattgtggatgggcaaaccctgtacttttctaagtatacaaaacactcattcattcagatcaacatacatgtacaagtaatacagaacacttcatgtaagcagcatactattaatattaagtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttccgtctCCTATGCAAAGTC-ATCAGACTGACAAA-C---------------TATACAAAACACTCATTCATTCA
gi|3 : A-T------GTTTATATCACCAA-TCAT-GG-CCCT-CAGGGGG--CATTT-AC-ATTTATAACAGTATGAC-ACAT----AAAGTGCA-TATAAAACACA------CATCG-TTTCAACT----TCATG---TGGGGT-TATA--ATAC----------TGTATAATGAA-CCCA---CGAAATTACAGTTTGT---T-TG-AAAGA--TAAACT-GGTT-T----TAGA--GCAATGTTTCAATGAGATACAAATAAGTTGA--TAGA-AAC---AAAACAATAA-T---ACATGTAGC---AGC--ATA--CTATACA-GTGT-AAAAAGGTGGCTTGAGTACA-GAGA------G-TACCAA-GGGACGGTGCA-ATGCCAAGTCGATCAGACTGACAAA-CTTGTAC---TC-AAGTATACAAAACACTCATTCATTCACATCAACGCATA-ACAAAAGT-ATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAAT-TAAAAAAAGGTGGCTTGAATACAGAGAGTACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTATACTCTa
gi|32 : TTCATTCAGATCAACGTACAATAAAAGTAATACAGAACAATTAACATGTA
gi|34 : AA-TACGACATGTAGC---AGC--ATA--CTATACA-GTTTA
gi|38 : CAAAACACTCATTCATTCAAACCAACGTACA-ATAttacaaggaatgac
gi|4 : A--GAAACTGGGTT-T----TAAA--GCAATGTTTCAAAGAGATACAAACAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGCATA----CTATACA-GTGTAAAAAAGGTGGCTTGGACACA-GAGACTCAGAG-TACCAA-GGGACGGTGCCTATGCAAAGTCGATCAAACTGACAAT-CTTGTAC---TCTAAGTATACAAAACACTCATTCATTCATATCAAAGTATA-ATAAAAGTAATACAAAACACTGTATGT-ATAGTAGCAGCATATATACT----ATAGTAAGTGTAAAA-AAGGTGGTTTGAATACAAAGAGTACCAAGGGATGGTGCCTATGCAAAGTCGATATGACTGACAAACTTATACTTTAAGTATACAAAACACTCATTCATTCAGATCAACGTACAATAAA
gi|5 : AAGTATACAAA-CACTCGCTCATTCAGATCAACGTACA-ATAAAAGTAATACAGAACACTGCATGT-A-----GCAGCATA----CT----ATAGTAAGTGTAAAAAA-GGTG-CTTGAATACAGAGAGCACCAAGGGACGGTGCCTATGCAAAGTCGATATGACTGGCAAACTTGTACTCTATGTATACAAAACACTCATTCATTCAAATCAACGTAC-ATACAAGTAATACAGAACACT--GCATGTAGCAGCATTACTATAGTAATAGTGAAAGGGG-GTTTTGAATACAG-AGAGCACCAAGGGACGGT-GCCTATGCAAAGTC-GATCTGACTGGCAGACTtatatatatgtgaataaataaatacacagagcgagatttcgatatggataggtaaatatatt
gi|6 : AGATAA--ATATA-TAAATTTGTTTAT-TCACCAA-TCAT-GGGCCCT-CAGGGGG--CATTTTAC-ATTCATAACAGTATGATCACAT----AAAGTACAATATAAAACACA------CATCG-TTTCAACA----TCAAG---TGGAGTATACAT-GTACATAAAGTATATGT-AAAAGAACCGTACGTCGATATT--AG-TTGTGCATGTG-TAAAA--GAAACTGGGTCATATGGTAGA--ACAATG
gi|7 : ttctgacctactgacccaaatctacatgcacagtgtttgcataatatcagatcaatatgatactcatTATA-T------ATTTAT-TCACTAA-TCAT-GGACCCT-CAGGGGG--CATTT-AC-ATTa
gi|7 : attatatatatataatataataCCCCA---CGAAATTACAG-TTGT---T-TG-AAAGA--GAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccccacgaaattacagttgtttgaaagagaa
gi|8 : attatatatatataatataatatatatatttattcactaatcatggaccctcagggggcatttacatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTAAAACACA------CATCG-TTTCAACT----TCAAG---TGAGGT-T------------------------------CCCCA---CGAAATTACAG-TTGT---T-TG-AAAGA--GAGACTGGGTT-T----TAGA--ACAATGTTTCA--GAGATACAAATAAGTGGA--TAGA-AAC---AAAACAATAA-TACGACATGTAGC---AGC--ATA--CTATACA-GTGT-AAAAAGGTGGCTTGAATACA-GAGA------G-TACCAA-GGGAC
gi|9 : GCTTGAACACAGGAGAGTACCAAGGGACGGTTGCCTATGCAAAGTCGGATCTGACT-GCAAACTTGTACTCTAAGTATACAAAAACA-CCATCC--TCA---CAACG--CTCAGGGTCCTG
25 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACAGCCACGTTTCAGGGGTCCTGAGTCACCTAGTGACCGTGGTCCCACACGCCACGAGGTAGGACTCATGACCCCATGACATTTGTTGAGGA
Unaligned ( gi|13 ): TCCTCACAACGTCAGGGGTCCTGAGTTCACTCGTAGCCGTGGACCGTGGGACCCACGGCCACGAGTGGACTCAGGATCCATGACGTTGTGAG
Unaligned ( gi|14 ): TCCTACACAGACGTCAGGGGTCCTGAGTCCACTCGTGGCCGGTGTCCCACGAGCACGGGTGGACTCAGGACCCTGACGTTCGTGAGG
Unaligned ( gi|15 ): ATCCTCACAACTTAAAGGCCCTTCAGGAGTTCACTCGTCAGTGGACCACAGCCACGAATGGACTCGGGATCCCGGACGTTGTGAGGA
Unaligned ( gi|16 ): CCTCACAACGTTCGGGGTCCGTGAGCCCCACTCGTGGCCGTTCACGGGCCACGACGTGGACTCAGGACCCCTGACGTTGTGAGGA
Unaligned ( gi|17 ): CTCACAACATCAGGGGTCCTGAGTCCACTCGTGGCCGTGATCCCACGGCCACGAGTAGATTCAGAACCCCTGGTGTTGTAAGGA
Unaligned ( gi|18 ): CCTCACATCAAGGGTCCCGAGTACATTTGTAGCTGTGTCCACGGCCACATTAGTGGACTCAGTACCCCTGATGTTGTGAGGA
Unaligned ( gi|19 ): TGCAAAACCTCTACCTCATAACACCAGGGTCCACAGTCACTCTTGGCCCTTGAACTCAGGAACCCTGACATGAGGAT
Unaligned ( gi|20 ): CGTCCTTTCAACGTCAGGGTCCTGGGTCCACAACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|21 ): GTCCTTTCAACGTCAGGGGTCCTGGGTCCACACGTGGTCGTGAAGAATGGACTCGGGATCCTTAACTTTGTGAGG
Unaligned ( gi|22 ): CCTCACCAACGTCAGGGTCCATCTCTGATCCACATGTGGACATCAGGACTCCCTGAAACGTTTGATGAAGATGA
Unaligned ( gi|23 ): CCTCGCAACGTCAGGGATCCCGAGTCCACTTGTCGCCATGAGTGAACTCGGGACTCCCGATGTTGAGAGGA
Unaligned ( gi|24 ): TCCTCACAACGTCAGGAGTCCGTGGCCGTGGGACACGAGTGGACTCGGGGACCCCTGATGTTGTGAGGA
Unaligned ( gi|25 ): TCCTCACAACGTCAGGGGTCCTGAGTGGACTCAGGACCCCTGACGTTGTGAG
Unaligned ( gi|27 ): TACACAACGTCAGAGGGTCCTGAGTCCACTCGTGGCCAAGTGGGACCTCAA
Unaligned ( gi|28 ): TATCCAAAAGCTCATCACACAGACGAAAATCAAAGTACTGAAGATACTGCG
Unaligned ( gi|29 ): TCCTCACAACGTCAGGGTCATAAGTCCACTTGTGGCCTCAGGACCCCTGAC
Unaligned ( gi|30 ): AACGTCAGGGGCGCCCTGAGTCCACTCATGGTCGTGGGACCCACAGCCACG
Unaligned ( gi|31 ): ACAACAGTCCCACGGCGACGAGTGGACTCAGGACCCCTGACGTTGTGAGG
Unaligned ( gi|33 ): TCCTCACAACGTCAGGGGTCCTGACTCAGGACCCCTTACGTTTTGAGG
Unaligned ( gi|35 ): TCGGGGGTTCCGAGTGGACTCGGGACTCCTGATGTTGTGAGGAT
Unaligned ( gi|36 ): ACGGCCACGAGTGGACTCAGGACCCCTGACATTGTGAGGA
Unaligned ( gi|37 ): GAGTGGACTCACCTAAGACCCCTGACGTTGTGAGGA
Unaligned ( gi|39 ): TCAGGGATCCTGAGTCCACTCGTGGCCGTCCCA
Unaligned ( gi|40 ): GACTCAGGACCCCTGATGTTGTGAGGAT