lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 1 222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222 1111111 2222222 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333 33333333333 4444444 111 333 11 222 55555555555555555555555555555555555555555555555555555555555555555555555555555555 2 0000000000000000000000000000000 1 22222222 555555555 222 33333333 333333333 1 55 11
lowQualScore : 77 2 9 6 3 3 555555555555555555555555555555555555555555555555555555555555555555555555555555 5 44444444 3 5555555 7777 1111111 2 3 2 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 00000 9 8 55 3 11111111111 6 6 6 0000000 000 88888 000 2 66 000 99 44444444444444444444444444444444444444444444444444444444444444444444444444444444 2 88 0 3333333333333333333333333333333 2 66666666 4 555555555 3 333 44444444 777777777 2 5 55 22
lowQualScore : .. . . . . . .............................................................................. . ........ . ....... .... ....... . . . . ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ..... . . .. . ........... . . . ....... ... ..... ... . .. ... .. ................................................................................ . .. . ............................... . ........ . ......... . ... ........ ......... . . .. ..
lowQualScore : 33 3 0 0 2 2 333333333333333333333333333333333333333333333333333333333333333333333333333333 7 22222222 3 3333333 8888 7777777 5 0 5 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 11111 8 6 00 5 77777777777 7 7 7 5555555 000 44444 666 7 55 777 22 00000000000000000000000000000000000000000000000000000000000000000000000000000000 5 55 0 0000000000000000000000000000000 0 00000000 0 333333333 7 333 77777777 000000000 5 0 00 00
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCCCG---AAA--------TA------TAG-TA-T--------TT--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGAT--TTC--CCCTTTT-ATAGCCAGATGAC-------TCCCACGNAAAACCTACTATGTATA--TGC--AT-CC-GT-G----A-CACC-CCC----TCTCATTCCGG-------------T-TACGTTTACGACGGACCATTCC--CG---------TACATATNCTTTCCATTCTGAAATT----A-----ANCCTTTTCTGGCTA-TTCATTTCTTT--TATATCCT-AAATGGAGAGTT--AATTTC--C---GAATTCCCTT-----GATTG--T--TTTTNG--AAATA-TTC-A-TTATTCAACGAACA---TCATNTCAT-TC--AGTCG-AA---TGTTAT-GTA----AAACAAT--------CA-----N-------------AA-------ANT-CAGA------ATA--TTTCGTGCTTGTA--AAA-CAGCACCTAT---TTAGGCAA--------C----GC-----T-A--GTTAAA--CA-GATA-G-AANTATTTATCNTACGANGAATCAA----AAT---TGT------C------CAT---TTGATT-NAN-ACAAAAAC--TTCCTAC---AGATAG--TGG-AG-TAAAAT---TTAAATTT------TACAACTCTGTT-GATTGCC--TA-C---CC-C-GATTC-AAATTGCCGCT-C--T---------AAGGAATCAACTCG---CTCTCTCGCTAGACGCGATT-----------CTTAACACGTC-A-TGNG---GAGAAA---GTGGG-ATTTTTCAATTAGATT-AGAGGTTTTTGAGAGGA--AACTTTTTCCCCAANTGTTCTCCGGTC-A-TTG--GTG----ATG---TTGCGCGA--CC-TATTATCG---ATAT------AACTATTNCAGGNGGCGCAACTCCCCGNCGNTACTGNCAGTACTTCGATTCGATNCACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCNATTCGAAG---AATATTCTGGAAAA----GTTTTGATTTTTAGCATGCACTCCNAAAACTTATT--TAGCTCACCTG
Reference ( gi|1 ) : TATAGTAGCCTTTCCTCCCAACCATCTTTCCCCCCG---AAA--------TA------TAG-TA-C--------TT--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGAT--CCC--CCCTTTT-ATAGCCAGATGAC-------TCCCATGGAAATCCTATTATGTATACATGTATATACCGGTAGTAGAAACACC-CCC----TCTCATTCCGG-------------T-AACGTTTACAGCGGACCATTCC--TG---------TACATATGCTTTCCATTCTGAAATT----A-----GGCTTTTCCTAGCTA-TT-ATTT--TC--TATATCCT-AAATGGAAAGTT--AATTTC--T---GAATCCCCTT-----GATT---T--TTTTT---AAATA-TTT-C-TTATCCAGCAAACA---TCATATCAG-TC--AGTCG-GA---TGTTAT-GTA----GAACAAT--------CA-----A-------------AA-------AAT-CAGA------ATA--TTTCGTCCTTGTA--AAA-CAGCACCTTT---TTAGGCAA--------T----GC-----T-A--GTTAAA--TA-GATACGCAAGTATTTATCGTACGGGGAATCAC----AAT---TGT------C------CAT---TTGATT-TAC-ACACAAAC--TTCATAC---AAATAG--TGG-AG-TAAAAT---TCAAACTC------TACAACTCTGTT-GATTGCC--TA-C---CC-C-GATTCCAAATTACCGCTAC--T---------AAGGAATCAACTCG---ACCTCTCACTAGACACGATT-----------CTTAACACCTC-A-TGTG---CAGAAA---GTAGG-GTTTTTC-ATCAAATT-AGAGGTTTTTAGCAGGA--AACCTTCCCCCCAGCTGTTCTCGGGAC-A-TTG--GTA---GATGA-ATTGTGTGA-ACC-TATTGTCG---ATAT------AACTATTCCAGGCAGTGCAACT-CCTA-----ACTGCCAATACATC--TTCG-TTTACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAA----GTTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|15 : ATAGTAGTATTTCCTCCTAGTCACAT--CCCCCGG---AAAAATAGCTATA------TAG-TAGT--------TT--------TTC-CC--CG-G--CCA---------A-A-TGG-CTA
gi|10 : tgaGTAGTGTTTCCCCCAAGCCATCTTTACTCCTG---GA---------TA-------AA-T--------------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGAT--TTC--CCCT----ATAGCCAGATGAC-------CCCCACGGGAAACATACTA-GTATA----TATATATC-GTCG-------ACTGCCC----T---ATTTCAG-------------T--------------GANCATTCC---------------CAT-CG-TTTCAATTCTAAAATT----A-----ATCCTTTTCTGGTTATTT-ATTT--CT--TTTAT
gi|7 : AGCCTTTAC-CCTAGCAATCTTTCTCCCCG---GAA--------AA------TGGCTA-T--------TTGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGACTATA----------GTAGGAT--CCC--CTTTTTT-ATAGTC-GATGAC-------
gi|12 : gtaTTCCCCCGGTAAAAA--------TAGCTACATAG-TA-CATGTAGGTCT--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGAT--TTCATCCATTTT-ATAGCCAGATTAT-------TTCCACGCACAACCTACTATGTAaacccaaccccccccaaaaccccccccccccccccccccctaaactatgacactgtagtagaataccctccgtttttcattccagttcacgtttacgaaggaccattcccatgcatacaaattacatatatctccatcctgaaatacctttcggggcttatttttatttcaaaattcgaatttcacttgattggggttttcgaaaaatattcattgtgaacataatttcattcttcgtcgaatat
gi|3 : agccctttcccccgcaaaaatggttatgaagtggCCCCCG---AAA--------GA------CAGATA-T--------CTAGTAGA--TCC-CCTACG-G--AAA---------T-G-TGG-ATATATA--------CTAAGAT--TAC--TCCTTTTCATGATCAGATAAC-------CC---TGTAAAACCTA----ATATACCTGC-----CC-----------CACC-CCC----TCT---------------------------TTT---------CATTCC--CA---------TGGATA-----------CTGAAATT----AATCGGGGTTTCTTTTTACAA-TTCATTTC-TT--TTTATCGT-AAGTGGAAAGTT--GTTCTT--TTACGAATTCCTTTCAAAGGATT---T--TTTG----AATTA-CTTAC-TT-TTCAACAAACA---TCATTTCAA-TT--A-------------------A----AAACAGT--------CA-----T-------------AT-------AAT-CAGG------ATA--CATCTTGCTTGTG--CAA-CAACAA-TAT---CAAGGCAACCAAACATT----TC-----TGA--TTTACA--CA-GATA----GGTATTTATCTTACGAGGAATCTA----AATGTATCT------C------CAT---TTCACTATA--ACAAAAACGTTTCCTAC---AGATAG--TGG-AT-TTAAAT---GTTAATTT------TATAA--CTGTT-GATTACC--T------------------AACTGTGACTTT--T---------AAGGAATCGACTTG---c
gi|2 : cttcaagtagtcgtgacaA--------TA------TAG-CA-G--------TC--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTCCA--CCCTTTT-ATAGCCAGATGACCCCCTCCTCCCCTTGAAAACCTACTAT-------TG---ATCCT---------AACCCC-CCC----CCCCCCCCCGGGTTCTTTTTTTCGT-TACATTTACGACAGACCATTCC--CA---------TACATATTCTTTCCATTCTGATATTTAAAA-----TCCCTTTCCTTGCTA-TTCATTTCTTT--TATATCCC-AAGTGGAGAGTT--AATTTC--C---GAATTCCCTT-----GATTG--TAATTTTTGG-AAATA-TTC-A-TTATTCAACAAACA---TC--ATC---TC--AGTTG-AA---TGTTAC-GTA----AAACAAT--------CATGTTTAGCCTT--------AG-------ATT-CAGAGTACCTGTA--TTTCGTGCTTGTA--AAA----CACCTTCTAATTCAGCAAACC-----T----GT-----T-A--GTTTAA--CA-AA-----AAATATTTATCTTATGAGGAATCAA----AAT---TGT------T------CCTCTCTCGATC-GAT-CC----AT--TTCCTAC---AG--AG--TGA-AG-TAAA-----TCAAA------------AA-----TT-GATTGCC--CA-C---CC-C-----C------------------------------AATCAACTCG---CTCTCTTGATAGACGCGAAT-----------CTTAACACATC-ATTATG----AGAAA---GTGGG-ACTTTTCAATTAGACT--GAGGTTTTTGAGAGGA--AA-TTTATGCCAAAATGTTCTCTGGTC-A-TTGATGTG---CATG---TTATG-GATATT-TA-TATCGTACATGT------AACTATTCCAGGGGGTGCAACT-CCCAGCTGTACTGTCAGTA---C--TTTGATTT--ATAAAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGG---ATTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|15 : atat--------TCC-CC--CG-G--AAA---------A-A-TAG-CTATATA--------GTAGTTT--TTC--CCC-------GGCCAAATGGC-------Tcc
gi|7 : tgaatagtagtatttcctcctagtcacaGTAGTAGAA-TACC-CTCCGTTTTTCATTCCAG-------------TTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATA-TCTCCATCCTGAAAT------------ACCTTTCGGGGC---TT-ATTT--T---TATTTC---------AAAATTCGAATTTC-------A-----CTT-----GATTGGGG--TTTTCGAAAAATA-TTC-A-TT-----GTGAACA---TAATTTCAT-TCTTCGTCG-AA---TATa
gi|8 : gtaagcctttaccctagcaatctttctccccggaaaatggctatttgtagattctcctccacgttaaaatgtggactatagtaggatccccttttttatagtcgatgacaacccaaccccccccaaaaccccccccccccccccccccctaaactatgacactTCATTCCGA-------------T-TACGTTTACGGCAGACTATTCC--C---------------ATCCTTTCCATTCTAAAATC----A-----ATCCTTTTCTGGTTA-TTTATTTCTTT--TATATCCT-AAATC-----TT--AATTTCCTT---GAATG----------GGTT---T--TTTGG---AAATA-TGC-A-CCATTCAACAAACG---TCGTTTCAT-TC--AGTCG-AA---TGTTAT-GTA----AAACAAT--------CA-----
gi|9 : -TT-ATTTCTTT--TATATTTTTAAATGGAGAGTT--ATTTGC--T---GATT--CCTT-----GA----------ATG---GAAGA-TTT---------GGGGAATA---TTTTAT--G-TC--ATT----A---TGTTAT-GTA----TAGCAAT--------TT-----ATATTTTCGGATGGAA-------AGT-TAGA------ATATGTTTTGTGCTTGTAACAAA-CA------TA---TTAGGCAA--------CCCAAGA-----T-ATTGTTAAAGGCA-GGTA-G-AATTATTTATCtatattaattttagaatgttagtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
gi|4 : ttTT--TCGTTATATTTT-AAATGGAGAGTT--AATTTA--C---GAATCCCCTT-----GATTGGGT--TTTTTG--GAATA---T-CATTATTCAAGAAACA---TTATATCAATTC--TGTTG-AA---TGTTAT-GTAAAGGAAACATT--------TA-----G-------------AATGCATTTAAT-CAGA------ATA--TTTAGTGTTTGTT--ACG-CAGCACCTAT---T-----AA--------T----GC-----G-A--CTGGGA--TATGCTAAATAATTATTTGTCGCACGATGGATCAA----AAT---TGTCTCTCGC------CAT---TTGA-T-TAA-AGAAAACC--TT--TTC---AGATAGATT----G-TAAAAC---T-AAAATG------TACAACT-TGTT-GATCATT--TACC---CC-C-GATTCAAACTTGCCGCTACAATAGTAAATCAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTC-A-TTAG---GAGAAA---GTGGGCGTTTCCA-ATTAGATT-AGAGGTTTTTGGGAGTA--AA-ATTTTCCCCAACTGTTCTCGGGaattgatgaatcaagaattctctc
gi|5 : ttcaAATAATTT-A-TTAATCAACAAAAAAACTAAT-TC-T-TT--AGTTGAGA---TGTTATTGTA-----AATAAT--------CA-----T-------------AA-------ATT-TAGA------AGG--CTT---------A--AAATCAGAA--TAT---CTAGGCAA-------------------------------------AT-CGGAA---TTTGT--TA--GTGAATCCA----AAT---TGT------CTCTCTTCAT---TTGATT-AACAACAAAAAC--TCCATACACGAGACAC--TGGCAGTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATT-----TT-------C--T---------CACAAATCAACTCG---CTCTCTCGCTAG-CCCAA-T-----------CTTA-----TT-A-T-TGATTCGGAA----------GTT--------AAGTTAAGAGGTGTTTGAGAGGAACAACC-CCCCTCCACCCCCCCCCCAATC-AGTTG--GTAATTAATGAGATTGTGC----CCATGTTATC----ATAT------AAtccttaatgg
gi|13 : AACA---TCAT--CAT-TC--AATCG-AAATTTGATAT-GTA----AAACAATGATATATTTA-----A-------------AATGTA---AATTCAGA------ATA--TTCCCTGCTTGTA--AAA-CAGTACCTAT---TCAGCTAA--------C----TCAGAATT-C--GTGAAA--TA-AAGATACAAATATTCAGCGTAT-----ATCATTTGAAAT---TGT------C------
gi|6 : t------TACAACTCAGTT-GATTGCC--TA-C---CCAT-GATTCGAAATTGCCGTTAC--T---------AGGGAATGAACTCG---TTCTCTC-----------TT-----------CTTAACACGTCAA-TA-G---GAGAAA---GTGGG-ATTTTGCAATCAAATT---TGCTTTTTAAGAGAA--AGGTTT---------TGTTCT----ATAA-TT----------------TTGCGTGA-----CATTG--G---ATATAATCAAAACTATTGCAGGCGGCGCAACTCCCTGTTGT-ACTGACAGTACTTTGATTCA-TACACAT
gi|14 : T-AATTGCC--TA-C---CT-CTGATTCCAAATTGCCACCGC--T---------AACAAATCACCTCG---CTCTCTCACCAGGCATGATT-----------CTTAACACGTC-A-TGAG-----GAAA---GTGAG-ATTTTTCAATTAGATT-GGGGGCTTTTCGAAGGG--AAtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|19 : GATT-----------CTCAACACCTT-A-TGGG---GAGAAAAAGGTGAG-ATTTTTCAATTAAATataggtgatatataa
gi|17 : tGAAA---GTGAG-ATTTT-----CAATTT-AGAAGTTTTAGAGAGGA--ATCTTTTTCTTCAAATGTTCTCTAGTC-A-TTG--GT
gi|6 : TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAA----GTTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGg
gi|11 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttAATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAA----GTTTTG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATATCGATGTACTCGTAACTAATCTAGGTCGTGCAACGTCCAGTTGTATTGTCAATAATATTGTGTACATACATAAT
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 6666666666666666666666 11 3333333333333 33333333 333333333333333 333333333333333333333333333333333333333333333333333333 1111 44444444444444444 111111 44444444444444444444 1111111111 111111 44444444444 1111 88888888888888888888888888888888888888888 111111 11111 9999999999999999999999999999999999999999999999999 111 2222222222222 111 111 11 111 11 22222 2222222222 111 777777777777777777777777777777777777777777777 111 22222222222 1 333333333333333 1 11111111 666666666 111 2222 5555555 444444 111 333333333 111 11111 22
lowQualScore : 1 1 0 0 6 1111111111 0000000000000000000000 5 33 5 66 2222222222222 5 77777777 88888 6 666666666666666 3 1 000000000000000000000000000000000000000000000000000000 5 7777 3 2 22222222222222222 1 222222 33333333333333333333 6 1 9999999999 1 3 4 0 777 2 0 1 000000 1 5 2 77777777777 8888 5 2 2 5 777 9 555 8888 0 4 777 5 0000 44444444444444444444444444444444444444444 66 444444 66 77 5 11111 7 5555555555555555555555555555555555555555555555555 3 44 1 0 5 000 5555555555555 444 1 444 44 11 3 0 444 0 5 8 11 8 00000 2222222222 000 5 888888888888888888888888888888888888888888888 0 111 3 5 6 1 77777777777 0 55 22 888 2 5 7 5 777777777777777 8 3 6 0 3 6 6 55555555 000000000 777 4444 44 1 1 0 7777777 1 77 555555 6 3 777 4 777777777 1 777 3 88888 7 1 3 77
lowQualScore : . . . . . .......... ...................... . .. . .. ............. . ........ ..... . ............... . . ...................................................... . .... . . ................. . ...... .................... . . .......... . . . . ... . . . ...... . . . ........... .... . . . . ... . ... .... . . ... . .... ......................................... .. ...... .. .. . ..... . ................................................. . .. . . . ... ............. ... . ... .. .. . . ... . . . .. . ..... .......... ... . ............................................. . ... . . . . ........... . .. .. ... . . . . ............... . . . . . . . ........ ......... ... .... .. . . . ....... . .. ...... . . ... . ......... . ... . ..... . . . ..
lowQualScore : 0 2 8 8 7 6666666666 6666666666666666666666 0 88 0 99 6666666666666 0 11111111 00000 7 000000000000000 0 0 222222222222222222222222222222222222222222222222222222 6 0000 2 5 77777777777777777 0 777777 33333333333333333333 7 7 3333333333 0 5 2 1 666 3 7 7 333333 4 7 1 11111111111 0000 0 2 0 1 888 7 333 1111 9 4 888 0 6666 88888888888888888888888888888888888888888 00 444444 99 99 7 44444 6 7777777777777777777777777777777777777777777777777 0 77 0 3 7 000 1111111111111 000 0 666 44 00 2 8 000 8 0 0 00 0 44444 6666666666 888 7 666666666666666666666666666666666666666666666 7 777 7 7 3 7 11111111111 1 33 11 888 0 4 1 7 000000000000000 5 3 7 5 2 7 7 22222222 555555555 555 0000 00 0 0 7 0000000 0 33 333333 5 2 555 2 000000000 0 555 2 88888 3 0 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGA-------C-------CCCCACGNAAAACCT---------------------ACTATGTAC--A-TGTATA--CC-GTAG----AACACCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-----CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANT--G---T----TTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTC-ATTC--AGTCGA-A---TGTTAT-GTA----AAACAATC-------------A-------------TA----A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCTATTNAGGCAA---C---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATT-C-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCG-ACC-TAT---TATCG---ATATAACTATTCCAGGCGGCGCAACTCCC-GCTG-TACTGNCAGTACTTCGATTC--T-CACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGA-------C-------TCCCACGNAAAACCT---------------------ACTATGTAT--A-TGCAT---CC-GT------GACACCCCC----TCTCATTCCG-------------GTT-ACGTTTACGACGGACCATTCCCGTACATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-----CTTTTCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGATT--G---T----TTTTNG--AAATA-TTCATTATTCAACGAACA---TCATNTC-ATTC--AGTCGA-A---TGTTAT-GTA----AAACAATC-------------A-------------NA----A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCTATTTAGGCAA---C---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCNTACGANGAATCAA-AAT---TGT------C------CAT---TTGATTNANA-CAAAAAC--TTCCTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATT-C-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACGCGATT-----------CTTAACACGTCATGNGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTTTCCCCAANT-GTTCTCCGGTCATTG-GT-G---ATG--TTGCGCG-ACC-TAT---TATCG---ATATAACTATTNCAGGNGGCGCAACTCCCCGNCGNTACTGNCAGTACTTCGATTCGATNCACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCNATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCNAAAACTTATT--TAGCTCACCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CGAA--------ATATAG-T-A-C----T--T--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGA-------C-------TCCCATGGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATA-----TGC-----TTTCCATTCTGA-AATTAG---GC-----TTTTCCTAGCTATT-ATT--TTCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT--T---T----TTTT----AAATA-TTTCTTATCCAGCAAACA---TCATATC-AGTC--AGTCGG-A---TGTTAT-GTA----GAACAATC-------------A-------------AA----A-------A-ATCAGA------ATAT--TTCGTCCTTGTAA--AA-CAGCACCTTTTTAGGCAA---T---G--------C-----T-A--GTTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT---TCAAACTCT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTCC-AAA-TTACCGC------------TACTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTC-ATCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---ATATAACTATTCCAGGCAGTGCAACTCC------TAACTGCCAATACATC--TTCG-TTTACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TGGA-----------TAA---A-T---------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGA-------C-------CCCCACGGGAAACAT---------------------ACTA-GTAT--A-TATATA--TC-GTC-----GAC-TGCCC----T---ATTTCA-------------GT--------------GANCATTCCC------A-----TCG-----TTTCAATTCTAA-AATTAA---TC-----CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : AATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAAG-----TTTTG
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCAAA--------A-ATGG-TTA-TGAAGTGGT--------TCC-CC--CG-G--TAA---------A-AATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : --------ATGTAG---G-T----C--T--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTA-------T-------TTCCACGCACAACCT---------------------ACTATGTAaacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggttcccccggtaaaaatagctacatagtacAACA---TCAT--C-ATTC--AATCGA-AATTTGATAT-GTA----AAACAATG-------------ATATATTTAAAATGTA----A-------A-TTCAGA------ATAT--TCCCTGCTTGTAA--AA-CAGTACCTATTCAGCTAA---C---T--------CAGAATT-C--GTGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------c
gi|14 : tTA-ATTGCCT--A-C---CT-CTGATT-CCAAA-TTGCCAC------------CGCTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GGAAAAATAGCTATATAG-T-AGT----T--T--------TTC-CC--CG-G--CCA---------A-A-TGG-CTAtaggtgatatataa
gi|17 : tgaGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------ATATAG-C-A-G----T--C--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGACCCCCTCC-------TCCCCTTGAAAACCT---------------------ACTAT--------TG-AT---CC--T------AACCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATA-----TTC-----TTTCCATTCTGATATTTAAAATCC-----CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATT--GTAAT----TTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTA----AAACAATC-------------ATGTTTAGCCT---TA----G-------A-TTCAGAGTACCTGTAT--TTCGTGCTTGTAA--AA-CACCTTCTAATTCAGCAAACCT---G--------T-----T-A--GTTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT-AAA-----TCAAA------------AA-----TTG-ATTGCCC--A-C---CC-C------C--------------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-G-A---TATTTATATCGTACATGTAACTATTCCAGGGGGTGCAACTCCCAGCTG-TACTGTCAGTACTTTGATT-------TATAAAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CGAA--------AGACAGAT-A-T----C--TAGTAGA--TCC-CCTACG-G--AAA---------T--GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAA-------C-------CCT---GTAAAACCT---------------------A--ATATAC--C-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA---------------------CTGA-AATTAA---TCGGGGTTTCTTTTTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAA--GGA-T----TTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTC-A-----------------ATTA----A----AAACAGTC-------------A-------------TA----T-------A-ATCAGG------ATAC--ATCTTGCTTGTGC--AA-CAACAA-TATCAAGGCAA---C---CAAACATTTC-----TGA--TTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAAT---GTTAATTTT------ATAA--CTGTTG-ATTACCT---------------------AA-CTGTGACT-----------T-TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATTGGG---T----TTTTTG--GAATA--TCATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAAACATTT-------------A-------------GA----ATGCATTTA-ATCAGA------ATAT--TTAGTGTTTGTTA--CG-CAGCACCTATTAATGCGA---CTGGG--------A-----T-AT-GCTAAA--T----------AATTATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAA----CTAAAATGT------ACAACT-TGTTG-ATCATTT--ACC---CC-C-GATT-C-AAACTTGCCGCTACAATAGTAAAT-CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AA-TTTTCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTA----AA-TAATC-------------A-------------TA----A-------A-TTTAGA------A--------G-GCTT--AA--AATCAGAA--TATCTAGGCAA----------------------------------------ATC-G-GA--ATTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATT-T------------------------T-CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTAT-TGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGTT----GGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----ATATAAg
gi|6 : T------ACAACTCAGTTG-ATTGCCT--A-C---CCAT-GATT-CGAAA-TTGCCGT------------TACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATT--TGC-TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---G-A---TAT---AATCA---A---AACTATTGCAGGCGGCGCAACTCCCTGTTG-TACTGACAGTACTTTGATTC-ATACACAT
gi|6 : TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttCCCTAGCAATCTTTCTCCC-CGGA--------AAATGGCT-A-T----T--TGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGAC--TATA--------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGA-------CAACCCAACCCCCCCCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-AC--ACTGTA-------GTAG----AATACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATATCTCCATCCTGA-AAT------AC-----CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTGGG---G----TTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTC-ATTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCC------A-----TCC-----TTTCCATTCTAA-AATCAA---TC-----CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAAT--GGGTT----TTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTC-ATTC--AGTCGA-A---TGTTAT-GTA----AAACAATC-------------A-------------TATATTA-------ATTTTAGA------ATGT--T
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAAT--G---GAAGATTTGGG--GAATA-TT-------------------TTATGTC-ATT----------A---TGTTAT-GTA----TAGCAATTTATATTTTCGGATG-------------GA----A-------A-GTTAGA------ATATGTTTTGTGCTTGTAACAAA-CA-----TATT-AGGCAA---C---C--------CAAGA-T-ATTGTTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------agtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATATCGATGTACTCGTAACTAATCTAGGTCGTGCAACGTCCAGTTGTATTGTCAATAATATTGTGTACATACATAAT
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 2222222222 6666666666666666666666 11 3333333333333 33333333 22222222222222222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 44444444444444444444 222222222222 111111 44444444444 8888888888888888888888888888888888888888888888888 111111 11111 999999999999999999999999999999999999999999999 111 2222222222222 111 111 11 111 11 22222 2222222222 111 77777777777777777777777777777777777777777777 111 22222222222 33333333333333 1 11111111 4444444 111 2222222222222 1 11 5555555 11 2222222222222222222222222 111 11111 11
lowQualScore : 1 1 0 0 6 1111111111 0000000000000000000000 5 33 5 66 2222222222222 5 77777777 88888 6 22222222222222222222 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 222222 33333333333333333333 6 1 444444444444 3 1 3 4 777 2 0 1 000000 1 5 1 77777777777 8888 5 22 2 777 9 66 8888 0 4 777 5 0 9999999999999999999999999999999999999999999999999 66 444444 66 77 5 11111 5 6 111111111111111111111111111111111111111111111 3 44 1 0 5 000 5555555555555 444 444 44 11 1 0 444 0 5 8 11 8 00000 2222222222 000 5 88888888888888888888888888888888888888888888 0 111 3 5 1 1 77777777777 1 11 22 888 2 5 7 5 22222222222222 3 3 6 3 6 6 88888888 3 9999999 444 9999999999999 44 2 6 99 6 1 88 5555555 33 0 9999999999999999999999999 0 8 444 3 88888 7 1 88
lowQualScore : . . . . . .......... ...................... . .. . .. ............. . ........ ..... . .................... . ............................................................................................. . ...... .................... . . ............ . . . . ... . . . ...... . . . ........... .... . .. . ... . .. .... . . ... . . ................................................. .. ...... .. .. . ..... . . ............................................. . .. . . . ... ............. ... ... .. .. . . ... . . . .. . ..... .......... ... . ............................................ . ... . . . . ........... . .. .. ... . . . . .............. . . . . . . ........ . ....... ... ............. .. . . .. . . .. ....... .. . ......................... . . ... . ..... . . ..
lowQualScore : 0 2 8 8 7 6666666666 6666666666666666666666 0 88 0 99 6666666666666 0 11111111 00000 7 55555555555555555555 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 333333 00000000000000000000 7 7 333333333333 7 0 5 2 666 3 7 7 333333 4 7 0 11111111111 0000 0 44 0 888 7 22 1111 9 4 888 0 9 9999999999999999999999999999999999999999999999999 00 444444 99 99 7 44444 7 6 999999999999999999999999999999999999999999999 0 77 3 3 7 000 1111111111111 000 666 44 00 0 8 000 8 0 0 00 0 44444 6666666666 888 7 66666666666666666666666666666666666666666666 7 777 7 7 5 7 11111111111 0 66 11 888 0 4 1 7 88888888888888 5 3 7 2 7 7 77777777 2 8888888 000 0000000000000 66 8 0 22 4 0 55 2222222 88 8 0000000000000000000000000 8 0 000 2 88888 3 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANT--GGG-T----TTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---AT------GTAACTATTCCAGGCGGTGCAACGTCCN-GCTGTACTGTCAGTACTTTGATTCG-T-CACATGAATCTGACAAATAG---ACA---TCGTCAT--A----T-TTATTCCCATTCGAA-G---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CACCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANT--G---T----TTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---AT------ATAACTATTCCAGGCGGCGCAAC-TCCC-GCTGTACTGNCAGTACTTCGATTC--T-CACATGAATCTGACAAATAG---ACA---TCGTCAT--A----T-TTATTCCCATTCGAA-G---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CGAA--------ATATAG-T-A-C----T--T--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGAC-------TCCCAT-------GGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATA-----TGC-----TTTCCATTCTGA-AATTAG---GC-------TTTTCCTAGCTATT-ATTT--TCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT--T---T----TTTT----AAATA-TTTCTTATCCAGCAAACA---TCATATCA-GTC--AGTCGG-A---TGTTAT-GTAGAACAATC-----------A----------A----A-------------A-------A-ATCAGA------ATAT--TTCGTCCTTGTAA--AA-CAGCACCT-TTTTAGGCAAT---G--------C-----T-A--GTTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT---TCAAACTCT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTCCAAA-TTACCGC------------TACTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTCA-TCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---AT------ATAACTATTCCAGGCAGTGCAAC-TCCT-A----ACTGCCAATACATC--TTCGTT-TACATGAATCTGACAAATAG---ACA---TCATCAT--A----T-TTATTCCCATTCGAA-G---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TGGA-----------TAA---A-T---------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGAC-------CCCCAC-------GGGAAACAT---------------------ACTA-GTA--TA-TATATA--TCG----TCGAC-TGCCC---------TATTTCA-------------GT--------------GANCATTCCC------A-----TCG-----TTTCAATTCTAA-AATTAA---TC-------CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : T------GTGACTATTCCAGGTCGTTCCTCGTCCA-GCTGTATTGTCAGTACTTTAAT-------ACATAAGT---ACACAAAGTTTACA--------AA--A----T-TTATCCTC-TTCAAGTG---AAT
gi|11 : ataatAATTTGACAGATAG---ACAACATCATCAT--A----TCTTATTCCCATTTGAA-G---AATATTCTTGAAAAG-----TTTTGttatctttaatttgacagatagacaacatcatcatatcttattcccatttgaagaatattcttgaaaagttttg
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCAAA--------A-ATGG-TTA-TGAAGTGGT--------TCC-CC--CG-G--TAA---------A-AATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : --------ATGTAG---G-T----C--T--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTAT-------TTCCAC-------GCACAACCT---------------------ACTATGTA--Caacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggttcccccggtaaaaatagctacatagtacAACA---TCAT--CA-TTC--AATCGA-AATTTGATAT-GTAAAACAATG-----------A----------T----ATATTTAAAATGTAA-------A-TTCAGA------ATAT--TCCCTGCTTGTAA--AA-CAGTACCT-ATTCAGCTAAC---T--------CAGAATT-C--GTGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------
gi|14 : tTA-ATTGCCT--A-C---CT-CTGATTCCAAA-TTGCCAC------------CGCTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GGAAAAATAGCTATATAG-T-AGT----T--T--------TTC-CC--CG-G--CCA---------A-A-TGG-CTAtaggtgatatataa
gi|16 : tga---TATCG---ATGTACTCGTAACTAATCTAGGTCGTGCAACGTCCA-GTTGTATTGTCAATA
gi|17 : aGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---atattgtgtacatacataat
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------ATATAG-C-A-G----T--C--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGAC-------CCCCTCCTCCCCTTGAAAACCT---------------------ACTAT--------TG-ATC--CT--------AA-CCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATA-----TTC-----TTTCCATTCTGATATTTAAAATCC-------CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATT--GTAAT----TTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTAAAACAATC-----------ATGTTTAGCCTT----A-------------G-------A-TTCAGAGTACCTGTAT--TTCGTGCTTGTAA--AA-CACCTTCTAATTCAGCAAACCT-G--------T-----T-A--GTTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT-AAA-----TCAAA------------AA-----TTG-ATTGCCC--A-C---CC-C-----C--------------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-GA----TATTTATATCGTACAT------GTAACTATTCCAGGGGGTGCAAC-TCCCAGCTGTACTGTCAGTACTTTGATT-------TATAAAT---ACAAAT-------T---TCCCCATTGA----TGTTATTTTGAATCATA-GATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CGAA--------AGACAGAT-A-T----C--TAGTAGA--TCC-CCTACG-G--AAA---------T--GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAAC-------CCT----------GTAAAACCT---------------------A--ATATA--CC-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA---------------------CTGA-AATTAA---TCGGGGTTTCTTT--TTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAA--GGA-T----TTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTCA------------------ATTA----AAAACAGTC-----------A----------T----A-------------T-------A-ATCAGG------ATAC--ATCTTGCTTGTGC--AA-CAACAA-T-ATCAAGGCAAC---CAAACATTTC-----TGA--TTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAAT---GTTAATTTT------ATAA--CTGTTG-ATTACCT--------------------AA-CTGTGACT-----------T-TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATT--GGG-T----TTTTTG--GAATA-T-CATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAAAC-----------A----------TTTAGA-------------ATGCATTTA-ATCAGA------ATAT--TTAGTGTTTGTTA--CG-CAGCACCT-ATTAATGCGACTGGG--------A-----T-AT-GCTAAA--T----------AATTATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAA----CTAAAATGT------ACAACT-TGTTG-ATCATTT--ACC---CC-C-GATTC-AAACTTGCCGCTACAATAGTAAAT-CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AATTT-TCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTAAA-TAATC-----------A----------T----A-------------A-------A-TTTAGA------A--------G-GCTT--AA--AATCAGAA--T-ATCTAGGCAA-------------------------------------ATC-G-GA--ATTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATTT------------------------T-CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTA-TTGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGT----TGGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----AT------ATAAg
gi|6 : T------ACAACTCAGTTG-ATTGCCT--A-C---CCAT-GATTCGAAA-TTGCCGT------------TACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATT--TGC-TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---GA----TAT---AATCA---A---------AACTATTGCAGGCGGCGCAAC-TCCCTGTTGTACTGACAGTACTTTGATTCA-TACACAT
gi|6 : TGAACCTGATAAATAG---ACA---GCGTCAT--AATAGT-TCATTCCTATCCGAG-G---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttCCCTAGCAATCTTTCTCCC-CGGA--------AAATGGCT-A-T----T--TGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGAC--TATA--------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGACAACCCAACCCCCC-------CCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-A--CACTGTA------G----TAGAA-TACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATATCTCCATCCTGA-AAT------AC-------CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTGGG---G----TTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTCA-TTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCC------A-----TCC-----TTTCCATTCTAA-AATCAA---TC-------CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAAT--GGGTT----TTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----ATATT---------A-------ATTTTAGA------ATGT--T
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAAT--G---GAAGATTTGGG--GAATA-TT-------------------TTATGTCA-TT----------A---TGTTAT-GTATAGCAATTTATATTTTCGGA----------TGG--A-------------A-------A-GTTAGA------ATATGTTTTGTGCTTGTAACAAA-CA-----T-ATT-AGGCAAC---C--------CAAGA-T-ATTGTTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------agtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 6666666666666666666666 11 3333333333333 33333333 22222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 44444444444444444444 222222222222 111111 111111 1111 88888888888888888888888888888888888888888888888 111111 11111 999999999999999999999999999999999999999999999 111 2222222222222 111 111 11 111 11 22222 2222222222 111 77777777777777777777777777777777777777777777 111 22222222222 33333333333333 1 11111111 4444444 111 1111 111111 1 44444444 111 333333333 111 11111 11
lowQualScore : 1 1 0 0 6 1111111111 0000000000000000000000 5 33 5 66 2222222222222 5 77777777 88888 6 22222222222222222222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 33333333333333333333 6 1 444444444444 3 1 3 4 777 2 0 1 000000 1 5 1 333333 1 77 5 2 2 777 9 555 8888 0 4 777 5 0000 22222222222222222222222222222222222222222222222 66 444444 66 77 5 11111 5 6 111111111111111111111111111111111111111111111 3 44 1 0 5 000 5555555555555 444 444 44 11 1 0 444 0 5 8 11 8 00000 2222222222 000 5 88888888888888888888888888888888888888888888 0 111 3 5 1 1 77777777777 1 11 22 888 2 5 3 5 22222222222222 3 3 6 3 6 6 88888888 3 9999999 444 7777 999999 44 0 1 6 6 55555555 6 3 777 4 777777777 0 777 3 88888 7 1 88
lowQualScore : . . . . . .......... ...................... . .. . .. ............. . ........ ..... . .................... . ............................................................................................. . ...... .................... . . ............ . . . . ... . . . ...... . . . ...... . .. . . . ... . ... .... . . ... . .... ............................................... .. ...... .. .. . ..... . . ............................................. . .. . . . ... ............. ... ... .. .. . . ... . . . .. . ..... .......... ... . ............................................ . ... . . . . ........... . .. .. ... . . . . .............. . . . . . . ........ . ....... ... .... ...... .. . . . . ........ . . ... . ......... . ... . ..... . . ..
lowQualScore : 0 2 8 8 7 6666666666 6666666666666666666666 0 88 0 99 6666666666666 0 11111111 00000 7 55555555555555555555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333333 00000000000000000000 7 7 333333333333 7 0 5 2 666 3 7 7 333333 4 7 0 333333 0 99 0 2 0 888 7 333 1111 9 4 888 0 6666 22222222222222222222222222222222222222222222222 00 444444 99 99 7 44444 7 6 999999999999999999999999999999999999999999999 0 77 3 3 7 000 1111111111111 000 666 44 00 0 8 000 8 0 0 00 0 44444 6666666666 888 7 66666666666666666666666666666666666666666666 7 777 7 7 5 7 11111111111 0 66 11 888 0 4 9 7 88888888888888 5 3 7 2 7 7 77777777 2 8888888 000 2222 222222 66 0 0 4 5 55555555 4 2 555 2 000000000 2 555 2 88888 3 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTC-ATTC--AGTCGA-A---TGTTAT-GTA----AAACAATC-----------A----------T--A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACNTCCAGCTGTACTGTCAGTACTTTGATTCGTA--T-ACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTC-ATTC--AGTCGA-A---TGTTAT-GTA----AAACAATC-----------A----------T--A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACGTCCNGCTGTACTGTCAGTACTTTGATTCGT---C-ACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CGAA--------ATATAG-T-A-C----T--T--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGAC-------TCCCAT-------GGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATA-----TGC-----TTTCCATTCTGA-AATTAG---GC-------TTTTCCTAGCTATT-ATTT--TCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT-------TTTTTT---AAATA-TTTCTTATCCAGCAAACA---TCATATC-AGTC--AGTCGG-A---TGTTAT-GTA----GAACAATC-----------A----------A--A-------------A-------A-ATCAGA------ATAT--TTCGTCCTTGTAA--AA-CAGCACCT-TTTTAGGCAAT---G--------C-----T-A--GTTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT---TCAAACTCT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTCCAAA-TTACCGC------------TACTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTCA-TCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---ATATA------ACTATTCCAGGCAGTGCAAC-TCCTA----ACTGCCAATACATC--TTCGT---TTACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TGGA-----------TAA---A-T---------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGAC-------CCCCAC-------GGGAAACAT---------------------ACTA-GTA--TA-TATATA--TCG----TCGAC-TGCCC---------TATTTCA-------------GT--------------GANCATTCCC------A-----TCG-----TTTCAATTCTAA-AATTAA---TC-------CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : TGTG------ACTATTCCAGGTCGTTCCTCGTCCAGCTGTATTGTCAGTACTTTAATACATAAGT-ACACAAAGTTTACAAA
gi|11 : ataatAATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAAG-----TTTTGatttatcctcttcaagtgaatttatctttaatttgacagatagacaacatcatcatatcttattcccatttgaagaatattcttgaaaagttttg
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCAAA--------A-ATGG-TTA-TGAAGTGGT--------TCC-CC--CG-G--TAA---------A-AATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : --------ATGTAG---G-T----C--T--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTAT-------TTCCAC-------GCACAACCT---------------------ACTATGTA--Caacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggttcccccggtaaaaatagctacatagtacAACA---TCAT--C-ATTC--AATCGA-AATTTGATAT-GTA----AAACAATG-----------A----------T--ATATTTAAAATGTAA-------A-TTCAGA------ATAT--TCCCTGCTTGTAA--AA-CAGTACCT-ATTCAGCTAAC---T--------CAGAATT-C--GTGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------
gi|14 : tTA-ATTGCCT--A-C---CT-CTGATTCCAAA-TTGCCAC------------CGCTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GGAAAAATAGCTATATAG-T-AGT----T--T--------TTC-CC--CG-G--CCA---------A-A-TGG-CTAtaggtgatatataa
gi|16 : tga---TATCG---ATGTACTCGTAACTAATCTAGGTCGTGCAACGTCCAGTTGTATTGTCAATA
gi|17 : aGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---atattgtgtacatacataat
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------ATATAG-C-A-G----T--C--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGAC-------CCCCTCCTCCCCTTGAAAACCT---------------------ACTAT--------TG-ATC--CT--------AA-CCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATA-----TTC-----TTTCCATTCTGATATTTAAAATCC-------CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATTGTA--A-TTTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTA----AAACAATC-----------ATGTTTAGCCTT--A-------------G-------A-TTCAGAGTACCTGTAT--TTCGTGCTTGTAA--AA-CACCTTCTAATTCAGCAAACCT-G--------T-----T-A--GTTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT-AAA-----TCAAA------------AA-----TTG-ATTGCCC--A-C---CC-C-----C--------------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-GA----TATTTATATCGTACATGTA------ACTATTCCAGGGGGTGCAACTCCCAGCTGTACTGTCAGTACTTTGATT---------TATAAAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CGAA--------AGACAGAT-A-T----C--TAGTAGA--TCC-CCTACG-G--AAA---------T--GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAAC-------CCT----------GTAAAACCT---------------------A--ATATA--CC-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA---------------------CTGA-AATTAA---TCGGGGTTTCTTT--TTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAAG-G--A-TTTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTC-A-----------------ATTA----A----AAACAGTC-----------A----------T--A-------------T-------A-ATCAGG------ATAC--ATCTTGCTTGTGC--AA-CAACAA-T-ATCAAGGCAAC---CAAACATTTC-----TGA--TTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAAT---GTTAATTTT------ATAA--CTGTTG-ATTACCT--------------------AA-CTGTGACT-----------T-TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATTG-G--G-TTTTTTG--GAATA--TCATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAAACATTT-----------A----------G--A-------------ATGCATTTA-ATCAGA------ATAT--TTAGTGTTTGTTA--CG-CAGCACCT-ATTAATGCGACTGGG--------A-----T-AT-GCTAAA--T----------AATTATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAA----CTAAAATGT------ACAACT-TGTTG-ATCATTT--ACC---CC-C-GATTC-AAACTTGCCGCTACAATAGTAAAT-CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AATTT-TCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTA----AA-TAATC-----------A----------T--A-------------A-------A-TTTAGA------A--------G-GCTT--AA--AATCAGAA--T-ATCTAGGCAA-------------------------------------ATC-G-GA--ATTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATTT------------------------T-CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTA-TTGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGT----TGGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----ATATA------Ag
gi|6 : T------ACAACTCAGTTG-ATTGCCT--A-C---CCAT-GATTCGAAA-TTGCCGT------------TACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATTTGC---TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---GA----TAT---AATCA---A---A------ACTATTGCAGGCGGCGCAACTCCCTGTTGTACTGACAGTACTTTGATTCATA--C-ACAT
gi|6 : TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttCCCTAGCAATCTTTCTCCC-CGGA--------AAATGGCT-A-T----T--TGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGACTATA----------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGACAACCCAACCCCCC-------CCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-A--CACTGTA------G----TAGAA-TACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATATCTCCATCCTGA-AAT------AC-------CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTG-G--G-GTTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTC-ATTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCC------A-----TCC-----TTTCCATTCTAA-AATCAA---TC-------CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAATG-G--GTTTTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTC-ATTC--AGTCGA-A---TGTTAT-GTA----AAACAATC-----------A----------T--ATATT---------A-------ATTTTAGA------ATGT--T
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAATG-GAAG-ATTTGGG--GAATA-TT-------------------TTATGTC-ATT----------A---TGTTAT-GTA----TAGCAATTTATATTTTCGGA----------TGGA-------------A-------A-GTTAGA------ATATGTTTTGTGCTTGTAACAAA-CA-----T-ATT-AGGCAAC---C--------CAAGA-T-ATTGTTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------agtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 6666666666666666666666 11 3333333333333 33333333 22222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 44444444444444444444 222222222222 111111 111111 8888888888888888888888888888888888888888888888888 111111 11111 999999999999999999999999999999999999999999999 111 2222222222222 111 111 11 111 11 22222 2222222222 111 77777777777777777777777777777777777777777777 111 22222222222 33333333333333 1 11111111 4444444 111 1111 111111 111111 111 333333333 111 11111 11
lowQualScore : 1 1 0 0 6 1111111111 0000000000000000000000 5 33 5 66 2222222222222 5 77777777 88888 6 22222222222222222222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 33333333333333333333 6 1 444444444444 3 1 3 4 777 2 0 1 000000 1 5 1 333333 1 77 5 22 2 777 9 66 8888 0 4 777 5 0 9999999999999999999999999999999999999999999999999 66 444444 66 77 5 11111 5 6 111111111111111111111111111111111111111111111 3 44 1 0 5 000 5555555555555 444 444 44 11 1 0 444 0 5 8 11 8 00000 2222222222 000 5 88888888888888888888888888888888888888888888 0 111 3 5 1 1 77777777777 1 11 22 888 2 5 3 5 22222222222222 3 3 6 3 6 6 88888888 3 9999999 444 7777 999999 44 1 1 0 8 222222 0 6 3 777 4 777777777 0 777 3 88888 7 1 88
lowQualScore : . . . . . .......... ...................... . .. . .. ............. . ........ ..... . .................... . ............................................................................................. . ...... .................... . . ............ . . . . ... . . . ...... . . . ...... . .. . .. . ... . .. .... . . ... . . ................................................. .. ...... .. .. . ..... . . ............................................. . .. . . . ... ............. ... ... .. .. . . ... . . . .. . ..... .......... ... . ............................................ . ... . . . . ........... . .. .. ... . . . . .............. . . . . . . ........ . ....... ... .... ...... .. . . . . ...... . . . ... . ......... . ... . ..... . . ..
lowQualScore : 0 2 8 8 7 6666666666 6666666666666666666666 0 88 0 99 6666666666666 0 11111111 00000 7 55555555555555555555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333333 00000000000000000000 7 7 333333333333 7 0 5 2 666 3 7 7 333333 4 7 0 333333 0 99 0 44 0 888 7 22 1111 9 4 888 0 9 9999999999999999999999999999999999999999999999999 00 444444 99 99 7 44444 7 6 999999999999999999999999999999999999999999999 0 77 3 3 7 000 1111111111111 000 666 44 00 0 8 000 8 0 0 00 0 44444 6666666666 888 7 66666666666666666666666666666666666666666666 7 777 7 7 5 7 11111111111 0 66 11 888 0 4 9 7 88888888888888 5 3 7 2 7 7 77777777 2 8888888 000 2222 222222 66 0 4 8 2 666666 2 4 2 555 2 000000000 2 555 2 88888 3 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTCCCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACNTCCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CGAA--------ATATAG-T-A-C----T--T--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGAC-------TCCCAT-------GGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATA-----TGC-----TTTCCATTCTGA-AATTAG---GC-------TTTTCCTAGCTATT-ATTT--TCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT-------TTTTTT---AAATA-TTTCTTATCCAGCAAACA---TCATATCA-GTC--AGTCGG-A---TGTTAT-GTAGAACAATC-----------A----------A----A-------------A-------A-ATCAGA------ATAT--TTCGTCCTTGTAA--AA-CAGCACCT-TTTTAGGCAAT---G--------C-----T-A--GTTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT---TCAAACTCT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTCCAAA-TTACCGC------------TACTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTCA-TCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---ATATA------ACTATTCCAGGCAGTGCAACTCCTA-----ACTGCCAATACATC--TTCGTT--TACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TGGA-----------TAA---A-T---------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGAC-------CCCCAC-------GGGAAACAT---------------------ACTA-GTA--TA-TATATA--TCG----TCGAC-TGCCC---------TATTTCA-------------GT--------------GANCATTCCC------A-----TCG-----TTTCAATTCTAA-AATTAA---TC-------CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : TGTG------ACTATTCCAGGTCGTTCCTCGTCCAGCTGTATTGTCAGTACTTTAATACATAAGTACACAAAGTTTACAAA
gi|11 : ataatAATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAAG-----TTTTGatttatcctcttcaagtgaatttatctttaatttgacagatagacaacatcatcatatcttattcccatttgaagaatattcttgaaaagttttg
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCAAA--------A-ATGG-TTA-TGAAGTGGT--------TCC-CC--CG-G--TAA---------A-AATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : --------ATGTAG---G-T----C--T--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTAT-------TTCCAC-------GCACAACCT---------------------ACTATGTA--Caacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggttcccccggtaaaaatagctacatagtacAACA---TCAT--CA-TTC--AATCGA-AATTTGATAT-GTAAAACAATG-----------A----------T----ATATTTAAAATGTAA-------A-TTCAGA------ATAT--TCCCTGCTTGTAA--AA-CAGTACCT-ATTCAGCTAAC---T--------CAGAATT-C--GTGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------
gi|14 : tTA-ATTGCCT--A-C---CT-CTGATTCCAAA-TTGCCAC------------CGCTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GGAAAAATAGCTATATAG-T-AGT----T--T--------TTC-CC--CG-G--CCA---------A-A-TGG-CTAtaggtgatatataa
gi|16 : tga---TATCG---ATGTACTCGTAACTAATCTAGGTCGTGCAACGTCCAGTTGTATTGTCAATAAT---ATT-GTG--TACAT
gi|17 : aGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---acataat
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------ATATAG-C-A-G----T--C--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGAC-------CCCCTCCTCCCCTTGAAAACCT---------------------ACTAT--------TG-ATC--CT--------AA-CCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATA-----TTC-----TTTCCATTCTGATATTTAAAATCC-------CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATTGTA--A-TTTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTAAAACAATC-----------ATGTTTAGCCTT----A-------------G-------A-TTCAGAGTACCTGTAT--TTCGTGCTTGTAA--AA-CACCTTCTAATTCAGCAAACCT-G--------T-----T-A--GTTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT-AAA-----TCAAA------------AA-----TTG-ATTGCCC--A-C---CC-C-----C--------------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-GA----TATTTATATCGTACATGTA------ACTATTCCAGGGGGTGCAACTCCCAGCTGTACTGTCAGTACTTTGATT--TA--TA----AAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CGAA--------AGACAGAT-A-T----C--TAGTAGA--TCC-CCTACG-G--AAA---------T--GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAAC-------CCT----------GTAAAACCT---------------------A--ATATA--CC-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA---------------------CTGA-AATTAA---TCGGGGTTTCTTT--TTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAAG-G--A-TTTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTCA------------------ATTA----AAAACAGTC-----------A----------T----A-------------T-------A-ATCAGG------ATAC--ATCTTGCTTGTGC--AA-CAACAA-T-ATCAAGGCAAC---CAAACATTTC-----TGA--TTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAAT---GTTAATTTT------ATAA--CTGTTG-ATTACCT--------------------AA-CTGTGACT-----------T-TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATTG-G--G-TTTTTTG--GAATA-T-CATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAAAC-----------A----------TTTAGA-------------ATGCATTTA-ATCAGA------ATAT--TTAGTGTTTGTTA--CG-CAGCACCT-ATTAATGCGACTGGG--------A-----T-AT-GCTAAA--T----------AATTATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAA----CTAAAATGT------ACAACT-TGTTG-ATCATTT--ACC---CC-C-GATTC-AAACTTGCCGCTACAATAGTAAAT-CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AATTT-TCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTAAA-TAATC-----------A----------T----A-------------A-------A-TTTAGA------A--------G-GCTT--AA--AATCAGAA--T-ATCTAGGCAA-------------------------------------ATC-G-GA--ATTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATTT------------------------T-CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTA-TTGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGT----TGGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----ATATA------Ag
gi|6 : T------ACAACTCAGTTG-ATTGCCT--A-C---CCAT-GATTCGAAA-TTGCCGT------------TACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATTTGC---TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---GA----TAT---AATCA---A---A------ACTATTGCAGGCGGCGCAACTCCCTGTTGTACTGACAGTACTTTGATTCATA--CACAT
gi|6 : TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttCCCTAGCAATCTTTCTCCC-CGGA--------AAATGGCT-A-T----T--TGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGACTATA----------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGACAACCCAACCCCCC-------CCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-A--CACTGTA------G----TAGAA-TACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATATCTCCATCCTGA-AAT------AC-------CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTG-G--G-GTTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTCA-TTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCC------A-----TCC-----TTTCCATTCTAA-AATCAA---TC-------CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAATG-G--GTTTTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----ATATT---------A-------ATTTTAGA------ATGT--T
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAATG-GAAG-ATTTGGG--GAATA-TT-------------------TTATGTCA-TT----------A---TGTTAT-GTATAGCAATTTATATTTTCGGA----------TGG--A-------------A-------A-GTTAGA------ATATGTTTTGTGCTTGTAACAAA-CA-----T-ATT-AGGCAAC---C--------CAAGA-T-ATTGTTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------agtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 6666666666666666666666 11 3333333333333 33333333 22222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 44444444444444444444 222222222222 111111 111111 8888888888888888888888888888888888888888888888888 111111 11111 999999999999999999999999999999999999999999999 111 2222222222222 111 111 11 111 11 22222 2222222222 111 77777777777777777777777777777777777777777777 111 22222222222 33333333333333 1 11111111 4444444 111 1111 111111 11 111111 111 333333333 111 11111 11
lowQualScore : 1 1 0 0 6 1111111111 0000000000000000000000 5 33 5 66 2222222222222 5 77777777 88888 6 22222222222222222222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 33333333333333333333 6 1 444444444444 3 1 3 4 777 2 0 1 000000 1 5 1 333333 1 77 5 22 2 777 9 66 8888 0 4 777 5 0 9999999999999999999999999999999999999999999999999 66 444444 66 77 5 11111 5 6 111111111111111111111111111111111111111111111 3 44 1 0 5 000 5555555555555 444 444 44 11 1 0 444 0 5 8 11 8 00000 2222222222 000 5 88888888888888888888888888888888888888888888 0 111 3 5 1 1 77777777777 1 11 22 888 2 5 3 5 22222222222222 3 3 6 3 6 6 88888888 3 9999999 444 7777 999999 44 0 11 1 0 8 222222 0 6 3 777 4 777777777 0 777 3 88888 7 1 88
lowQualScore : . . . . . .......... ...................... . .. . .. ............. . ........ ..... . .................... . ............................................................................................. . ...... .................... . . ............ . . . . ... . . . ...... . . . ...... . .. . .. . ... . .. .... . . ... . . ................................................. .. ...... .. .. . ..... . . ............................................. . .. . . . ... ............. ... ... .. .. . . ... . . . .. . ..... .......... ... . ............................................ . ... . . . . ........... . .. .. ... . . . . .............. . . . . . . ........ . ....... ... .... ...... .. . .. . . . ...... . . . ... . ......... . ... . ..... . . ..
lowQualScore : 0 2 8 8 7 6666666666 6666666666666666666666 0 88 0 99 6666666666666 0 11111111 00000 7 55555555555555555555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333333 00000000000000000000 7 7 333333333333 7 0 5 2 666 3 7 7 333333 4 7 0 333333 0 99 0 44 0 888 7 22 1111 9 4 888 0 9 9999999999999999999999999999999999999999999999999 00 444444 99 99 7 44444 7 6 999999999999999999999999999999999999999999999 0 77 3 3 7 000 1111111111111 000 666 44 00 0 8 000 8 0 0 00 0 44444 6666666666 888 7 66666666666666666666666666666666666666666666 7 777 7 7 5 7 11111111111 0 66 11 888 0 4 9 7 88888888888888 5 3 7 2 7 7 77777777 2 8888888 000 2222 222222 66 8 00 4 8 2 666666 2 4 2 555 2 000000000 2 555 2 88888 3 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CGAA--------ATATAG-T-A-C----T--T--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGAC-------TCCCAT-------GGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATA-----TGC-----TTTCCATTCTGA-AATTAG---GC-------TTTTCCTAGCTATT-ATTT--TCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT-------TTTTTT---AAATA-TTTCTTATCCAGCAAACA---TCATATCA-GTC--AGTCGG-A---TGTTAT-GTAGAACAATC-----------A----------A----A-------------A-------A-ATCAGA------ATAT--TTCGTCCTTGTAA--AA-CAGCACCT-TTTTAGGCAAT---G--------C-----T-A--GTTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT---TCAAACTCT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTCCAAA-TTACCGC------------TACTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTCA-TCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---ATATA------ACTATTCCAGGCAGTGCAACTC--CTA-----ACTGCCAATACATC--TTCGTT--TACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TGGA-----------TAA---A-T---------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGAC-------CCCCAC-------GGGAAACAT---------------------ACTA-GTA--TA-TATATA--TCG----TCGAC-TGCCC---------TATTTCA-------------GT--------------GANCATTCCC------A-----TCG-----TTTCAATTCTAA-AATTAA---TC-------CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : TGTG------ACTATTCCAGGTCGTTC--CTCGTCCAGCTGTATTGTCAGTACTTTAATACATAAGTACACAAAGTTTACAAA
gi|11 : ataatAATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAAG-----TTTTGatttatcctcttcaagtgaatttatctttaatttgacagatagacaacatcatcatatcttattcccatttgaagaatattcttgaaaagttttg
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCAAA--------A-ATGG-TTA-TGAAGTGGT--------TCC-CC--CG-G--TAA---------A-AATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : --------ATGTAG---G-T----C--T--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTAT-------TTCCAC-------GCACAACCT---------------------ACTATGTA--Caacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggttcccccggtaaaaatagctacatagtacAACA---TCAT--CA-TTC--AATCGA-AATTTGATAT-GTAAAACAATG-----------A----------T----ATATTTAAAATGTAA-------A-TTCAGA------ATAT--TCCCTGCTTGTAA--AA-CAGTACCT-ATTCAGCTAAC---T--------CAGAATT-C--GTGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------
gi|14 : tTA-ATTGCCT--A-C---CT-CTGATTCCAAA-TTGCCAC------------CGCTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GGAAAAATAGCTATATAG-T-AGT----T--T--------TTC-CC--CG-G--CCA---------A-A-TGG-CTAtaggtgatatataa
gi|16 : tga---TATCG---ATGTACTCGTAACTAATCTAGGTCGTGCAACGT--CCAGTTGTATTGTCAATAAT---ATT-GTG--TACAT
gi|17 : aGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---acataat
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------ATATAG-C-A-G----T--C--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGAC-------CCCCTCCTCCCCTTGAAAACCT---------------------ACTAT--------TG-ATC--CT--------AA-CCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATA-----TTC-----TTTCCATTCTGATATTTAAAATCC-------CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATTGTA--A-TTTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTAAAACAATC-----------ATGTTTAGCCTT----A-------------G-------A-TTCAGAGTACCTGTAT--TTCGTGCTTGTAA--AA-CACCTTCTAATTCAGCAAACCT-G--------T-----T-A--GTTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT-AAA-----TCAAA------------AA-----TTG-ATTGCCC--A-C---CC-C-----C--------------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-GA----TATTTATATCGTACATGTA------ACTATTCCAGGGGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATT--TA--TA----AAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CGAA--------AGACAGAT-A-T----C--TAGTAGA--TCC-CCTACG-G--AAA---------T--GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAAC-------CCT----------GTAAAACCT---------------------A--ATATA--CC-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA---------------------CTGA-AATTAA---TCGGGGTTTCTTT--TTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAAG-G--A-TTTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTCA------------------ATTA----AAAACAGTC-----------A----------T----A-------------T-------A-ATCAGG------ATAC--ATCTTGCTTGTGC--AA-CAACAA-T-ATCAAGGCAAC---CAAACATTTC-----TGA--TTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAAT---GTTAATTTT------ATAA--CTGTTG-ATTACCT--------------------AA-CTGTGACT-----------T-TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATTG-G--G-TTTTTTG--GAATA-T-CATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAAAC-----------A----------TTTAGA-------------ATGCATTTA-ATCAGA------ATAT--TTAGTGTTTGTTA--CG-CAGCACCT-ATTAATGCGACTGGG--------A-----T-AT-GCTAAA--T----------AATTATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAA----CTAAAATGT------ACAACT-TGTTG-ATCATTT--ACC---CC-C-GATTC-AAACTTGCCGCTACAATAGTAAAT-CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AATTT-TCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTAAA-TAATC-----------A----------T----A-------------A-------A-TTTAGA------A--------G-GCTT--AA--AATCAGAA--T-ATCTAGGCAA-------------------------------------ATC-G-GA--ATTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATTT------------------------T-CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTA-TTGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGT----TGGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----ATATA------Ag
gi|6 : T------ACAACTCAGTTG-ATTGCCT--A-C---CCAT-GATTCGAAA-TTGCCGT------------TACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATTTGC---TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---GA----TAT---AATCA---A---A------ACTATTGCAGGCGGCGCAACTC--CCTGTTGTACTGACAGTACTTTGATTCATA--CACAT
gi|6 : TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttCCCTAGCAATCTTTCTCCC-CGGA--------AAATGGCT-A-T----T--TGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGACTATA----------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGACAACCCAACCCCCC-------CCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-A--CACTGTA------G----TAGAA-TACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATATCTCCATCCTGA-AAT------AC-------CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTG-G--G-GTTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTCA-TTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCC------A-----TCC-----TTTCCATTCTAA-AATCAA---TC-------CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAATG-G--GTTTTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----ATATT---------A-------ATTTTAGA------ATGT--T
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAATG-GAAG-ATTTGGG--GAATA-TT-------------------TTATGTCA-TT----------A---TGTTAT-GTATAGCAATTTATATTTTCGGA----------TGG--A-------------A-------A-GTTAGA------ATATGTTTTGTGCTTGTAACAAA-CA-----T-ATT-AGGCAAC---C--------CAAGA-T-ATTGTTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------agtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 6666666666666666666666 11 3333333333333 33333333 22222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 44444444444444444444 222222222222 111111 111111 8888888888888888888888888888888888888888888888888 111111 11111 999999999999999999999999999999999999999999999 111 2222222222222 111 111 11 111 11 22222 2222222222 111 77777777777777777777777777777777777777777777 111 22222222222 33333333333333 1 11111111 4444444 111 1111 111111 11 111111 111 333333333 111 11111 11
lowQualScore : 1 1 0 0 6 1111111111 0000000000000000000000 5 33 5 66 2222222222222 5 77777777 88888 6 22222222222222222222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 33333333333333333333 6 1 444444444444 3 1 3 4 777 2 0 1 000000 1 5 1 333333 1 77 5 22 2 777 9 66 8888 0 4 777 5 0 9999999999999999999999999999999999999999999999999 66 444444 66 77 5 11111 5 6 111111111111111111111111111111111111111111111 3 44 1 0 5 000 5555555555555 444 444 44 11 1 0 444 0 5 8 11 8 00000 2222222222 000 5 88888888888888888888888888888888888888888888 0 111 3 5 1 1 77777777777 1 11 22 888 2 5 3 5 22222222222222 3 3 6 3 6 6 88888888 3 9999999 444 7777 999999 44 0 11 1 0 8 222222 0 6 3 777 4 777777777 0 777 3 88888 7 1 88
lowQualScore : . . . . . .......... ...................... . .. . .. ............. . ........ ..... . .................... . ............................................................................................. . ...... .................... . . ............ . . . . ... . . . ...... . . . ...... . .. . .. . ... . .. .... . . ... . . ................................................. .. ...... .. .. . ..... . . ............................................. . .. . . . ... ............. ... ... .. .. . . ... . . . .. . ..... .......... ... . ............................................ . ... . . . . ........... . .. .. ... . . . . .............. . . . . . . ........ . ....... ... .... ...... .. . .. . . . ...... . . . ... . ......... . ... . ..... . . ..
lowQualScore : 0 2 8 8 7 6666666666 6666666666666666666666 0 88 0 99 6666666666666 0 11111111 00000 7 55555555555555555555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333333 00000000000000000000 7 7 333333333333 7 0 5 2 666 3 7 7 333333 4 7 0 333333 0 99 0 44 0 888 7 22 1111 9 4 888 0 9 9999999999999999999999999999999999999999999999999 00 444444 99 99 7 44444 7 6 999999999999999999999999999999999999999999999 0 77 3 3 7 000 1111111111111 000 666 44 00 0 8 000 8 0 0 00 0 44444 6666666666 888 7 66666666666666666666666666666666666666666666 7 777 7 7 5 7 11111111111 0 66 11 888 0 4 9 7 88888888888888 5 3 7 2 7 7 77777777 2 8888888 000 2222 222222 66 8 00 4 8 2 666666 2 4 2 555 2 000000000 2 555 2 88888 3 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CGAA--------ATATAG-T-A-C----T--T--------TCC-CC--CG-G--AAA---------A-AATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGAC-------TCCCAT-------GGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATA-----TGC-----TTTCCATTCTGA-AATTAG---GC-------TTTTCCTAGCTATT-ATTT--TCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT-------TTTTTT---AAATA-TTTCTTATCCAGCAAACA---TCATATCA-GTC--AGTCGG-A---TGTTAT-GTAGAACAATC-----------A----------A----A-------------A-------A-ATCAGA------ATAT--TTCGTCCTTGTAA--AA-CAGCACCT-TTTTAGGCAAT---G--------C-----T-A--GTTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT---TCAAACTCT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTCCAAA-TTACCGC------------TACTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTCA-TCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---ATATA------ACTATTCCAGGCAGTGCAACTC--CTA-----ACTGCCAATACATC--TTCGTT--TACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TGGA-----------TAA---A-T---------------------C--CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGAC-------CCCCAC-------GGGAAACAT---------------------ACTA-GTA--TA-TATATA--TCG----TCGAC-TGCCC---------TATTTCA-------------GT--------------GANCATTCCC------A-----TCG-----TTTCAATTCTAA-AATTAA---TC-------CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : TGTG------ACTATTCCAGGTCGTTC--CTCGTCCAGCTGTATTGTCAGTACTTTAATACATAAGTACACAAAGTTTACAAA
gi|11 : ataatAATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAAG-----TTTTGatttatcctcttcaagtgaatttatctttaatttgacagatagacaacatcatcatatcttattcccatttgaagaatattcttgaaaagttttg
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCAAA--------A-ATGG-TTA-TGAAGTGGT--------TCC-CC--CG-G--TAA---------A-AATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : --------ATGTAG---G-T----C--T--------TCC-CCAACG-G--GAA---------T-A-TGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTAT-------TTCCAC-------GCACAACCT---------------------ACTATGTA--Caacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggttcccccggtaaaaatagctacatagtacAACA---TCAT--CA-TTC--AATCGA-AATTTGATAT-GTAAAACAATG-----------A----------T----ATATTTAAAATGTAA-------A-TTCAGA------ATAT--TCCCTGCTTGTAA--AA-CAGTACCT-ATTCAGCTAAC---T--------CAGAATT-C--GTGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------
gi|14 : tTA-ATTGCCT--A-C---CT-CTGATTCCAAA-TTGCCAC------------CGCTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GGAAAAATAGCTATATAG-T-AGT----T--T--------TTC-CC--CG-G--CCA---------A-A-TGG-CTAtaggtgatatataa
gi|16 : tga---TATCG---ATGTACTCGTAACTAATCTAGGTCGTGCAACGT--CCAGTTGTATTGTCAATAAT---ATT-GTG--TACAT
gi|17 : aGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---acataat
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------ATATAG-C-A-G----T--C--------CCCTCC--C-----AAA---------A-TGTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGAC-------CCCCTCCTCCCCTTGAAAACCT---------------------ACTAT--------TG-ATC--CT--------AA-CCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATA-----TTC-----TTTCCATTCTGATATTTAAAATCC-------CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATTGTA--A-TTTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTAAAACAATC-----------ATGTTTAGCCTT----A-------------G-------A-TTCAGAGTACCTGTAT--TTCGTGCTTGTAA--AA-CACCTTCTAATTCAGCAAACCT-G--------T-----T-A--GTTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT-AAA-----TCAAA------------AA-----TTG-ATTGCCC--A-C---CC-C-----C--------------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-GA----TATTTATATCGTACATGTA------ACTATTCCAGGGGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATT--TA--TA----AAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CGAA--------AGACAGAT-A-T----C--TAGTAGA--TCC-CCTACG-G--AAA---------T--GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAAC-------CCT----------GTAAAACCT---------------------A--ATATA--CC-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA---------------------CTGA-AATTAA---TCGGGGTTTCTTT--TTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAAG-G--A-TTTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTCA------------------ATTA----AAAACAGTC-----------A----------T----A-------------T-------A-ATCAGG------ATAC--ATCTTGCTTGTGC--AA-CAACAA-T-ATCAAGGCAAC---CAAACATTTC-----TGA--TTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAAT---GTTAATTTT------ATAA--CTGTTG-ATTACCT--------------------AA-CTGTGACT-----------T-TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATTG-G--G-TTTTTTG--GAATA-T-CATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAAAC-----------A----------TTTAGA-------------ATGCATTTA-ATCAGA------ATAT--TTAGTGTTTGTTA--CG-CAGCACCT-ATTAATGCGACTGGG--------A-----T-AT-GCTAAA--T----------AATTATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAA----CTAAAATGT------ACAACT-TGTTG-ATCATTT--ACC---CC-C-GATTC-AAACTTGCCGCTACAATAGTAAAT-CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AATTT-TCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTAAA-TAATC-----------A----------T----A-------------A-------A-TTTAGA------A--------G-GCTT--AA--AATCAGAA--T-ATCTAGGCAA-------------------------------------ATC-G-GA--ATTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTTAGATTTTCAATATACTACTTTGTTCTATTGCCTTTA-CGTGCC-T-GATTT------------------------T-CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTA-TTGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGT----TGGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----ATATA------Ag
gi|6 : T------ACAACTCAGTTG-ATTGCCT--A-C---CCAT-GATTCGAAA-TTGCCGT------------TACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATTTGC---TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---GA----TAT---AATCA---A---A------ACTATTGCAGGCGGCGCAACTC--CCTGTTGTACTGACAGTACTTTGATTCATA--CACAT
gi|6 : TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttatttCCCTAGCAATCTTTCTCCC-CGGA--------AAATGGCT-A-T----T--TGTAGATTCTCC-TC--CACGTTAAA---------A-TGTGGACTATA----------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGACAACCCAACCCCCC-------CCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-A--CACTGTA------G----TAGAA-TACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATACAAATTACATATATCTCCATCCTGA-AAT------AC-------CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTG-G--G-GTTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTCA-TTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCC------A-----TCC-----TTTCCATTCTAA-AATCAA---TC-------CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAATG-G--GTTTTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----ATATT---------A-------ATTTTAGA------ATGT--T
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAATG-GAAG-ATTTGGG--GAATA-TT-------------------TTATGTCA-TT----------A---TGTTAT-GTATAGCAATTTATATTTTCGGA----------TGG--A-------------A-------A-GTTAGA------ATATGTTTTGTGCTTGTAACAAA-CA-----T-ATT-AGGCAAC---C--------CAAGA-T-ATTGTTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------agtgtaaattaagaataaagcgcgcctgtaaagcacttacacaaacccagattccaaacagccgtcactatcaaatgattctcaacaccttatgggga
blockSeqs : G A G AAATAGCTAT CTATTTGTAGATTC T AA C TT TGTGGCTATATAG A TACATGTA ATC C CCCCTCCTCCCCT G CCCCCCCCCCCCCCCCCCTAAACTATGACACTGTAGTAGAATACCCTCCGTTTTTCATTCCAGTTC A ACGACA ATGCATACAAATTACATATA T T TCGGGGTTT T G T T TTT G G CTTTTA A A T GAAG G AA A TC T AAC C AT CTTC G ATT T ATATATTTAAAATGTAA TT GTACCT GT CA T GTACC A C CCAAGATATTGTTAAAGGCAGGTAGAAT G TG T G GTA CTCTCGC CTC CAA AA GT C CGA G C TT T ATCGG TTTTCAATAT CTT T ACCCCCGATTCAAACTTGCCGCTACAATAGTAAAT CAG A G A T AAAAAAAACAA G GA GA AAG T G G C CAACCCCCCTCCAC T A A A C . TGCATG T CCCA TTA GTAC CTCGTA TC GT C A CATAAG T A ACA A AATAGT ATT A TTTTT A A .
blockSeqs : A T . AT TTATGAAGTGGT . TA . . AAA . GTACAT CAC . AACCCAACCCCCC C ACTATTGATCCTAACCCCCCCCCCCCCCCCGGGTTCTTTTTTTCGTT G ACGAAG ATACATATTC . T AATCC C T T C CC G A TTC A . A TAA T . . TT T . T T CA . . . TATATTTTCGGATGGAA T . . . . CCTTC . C TCAGAATTCGTGAAATAAAGATACAAA T CG G . . CTCTCTT . TC GA . C . G . . . AT TTTT CTC . ACCTCTGATTCCAAATTGCCACCG . G A G T . C GG GA . T A A . TC A A . A . . AGA T GA . G . TC . T G CATA T A . C TGATG . A . .
blockSeqs : T . AT ATATCTAGTAGA . . . . ATG . . C . CCCCAC G ACTAGTATATATATATCGTCGACTGCCCTATTTCAGT G ACGGCA ATGGATA . T TC C T A C GT A G TTA A . T GGT T . . TT T . A T CA . . . ATTTAGAATGCATTT T . . . . GCACC . A CAAACATTTCTGATTTACACAGATAGG T CG G . . C . AA AA . T . C . . . A ATGT CT . ACCCATGATTCGAAATTGCCGTTA . G A A A . A TA GA . T G A . AA C C . C . . ACA . GA . A . GG . C G GTG C . . G ATC . . .
blockSeqs : . AG TAGTTT . . . . ATG . . C . TTCCAC T AATATACCTGCCCCACCCCCTCT . . ATCG . C AC T G T C TT A G TGC A . T GA C . . TC T . T T CT . . . ATGTTTAGCCTTAG A . . . . ACAA . A CTGTTAGTTTAACAAAAAA G TG T . . T . A . . A . . . . . . . C . TTACGTGCCTGATTTT . G . C T . C TA GA . C G A . GG . T . A . . . . . CG . T . TA .
blockSeqs : . AA CAGTC . . . . TA . . T . CCT C . . ATCC . . TC . G . T CT A . TT . . A GG G . . GC T . T T TA . . . ATATATTA A . . . . GAA . T TGGGATATGCTAAATAAT A T T . . C . . AACTGTGACTT . . . . T . T TC G . T A T . A . . . . . . .
blockSeqs : A GTCT . . . . AA . . C T . . . T . . A GG G . . C . . G T CA . . . ATAT T . . . . . . . ATCGGA . . T . . C . ACCCCC . . G TA . . G . . .
blockSeqs : . AT . . . . TG . T . T . . . . . . . . ATAA G . . . . .
blockSeqs : . . . . . .
blockSeqCons : TAGTT***************** ATG********** ATGCGTAC************ GG**** ATATTTGTAA*************************************** CGGATATCGTTAAACAGATAGAAA********************* A**** ACCCGTGACTCAAATTGCCCT*********************** GTA***
originalCons : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAG-T-A-T----T--T--------TCC-CC--CG-G--AAA---------A-AGTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCGTGCATA-----TNC-----TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATC-----------A----------T----A-------------A-------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAAC---G--------C-----T-A--GTTAAA--C--AGATA-G-AANTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT---TTAAATTTT------ACAACTCTGTTG-ATTGCCT--A-C---CC-C-GATTC-AAA-TTGCCGC------------T-CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATTCGTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
finalCons : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CGAA--------ATATAGTAGTT-----------------TCC-CC--CG-G--AAAATG----------TGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCATGCGTAC------------TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTGGG----TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTCA-TTC--AGTCGA-A---TGTTAT-GTAAAACAATCATATTTGTAA---------------------------------------A-NTCAGA------ATAT--TTCGTGCTTGTAA--AA-CAGCACCT-ATTNAGGCAACCGGATATCGTTAAACAGATAGAAA---------------------TATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAA----TTAAATTTT------ACAACTCTGTTG-ATTGCCTACCCGTGACTCAAATTGCCCT-----------------------CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTACTTTGATTGTA---TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33333333 22222222222222222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111111 66666666666666666666 222222222222 111111 111111 000000000000000000000000000000000000 111111 66666666666666666666666666666666666666 111 2222222222222 111 111 11 111 11 11 3333333333333333333 111 99999999999999999999999999999999999 111 22222222222 33333333333333 1 11111111 4444444 111 1111 111111 11 1111 111 333333333 111 11111 11
lowQualScore : 1 1 0 0 5 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 77777777 88888 6 22222222222222222222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 222222 44444444444444444444 1 6 1 444444444444 3 1 3 4 777 2 0 1 000000 1 5 1 333333 1 77 5 2 2 777 9 555 8888 0 4 777 5 0 9999 222222222222222222222222222222222222 1 444444 777 2 0 5 1 55 5 5 22222222222222222222222222222222222222 3 44 1 0 5 000 5555555555555 444 444 44 11 1 0 444 0 5 8 11 44 0000000000000000000 000 5 44444444444444444444444444444444444 0 111 3 5 1 1 77777777777 1 11 22 888 2 5 3 5 22222222222222 3 3 6 3 6 6 88888888 3 9999999 444 7777 999999 44 0 11 1 8 3 5 7777 99 44 0 6 3 777 4 777777777 0 777 3 88888 7 1 88
lowQualScore : . . . . . ....................................................................................... . ........ ..... . .................... . ............................................................................................. . ...... .................... . . . ............ . . . . ... . . . ...... . . . ...... . .. . . . ... . ... .... . . ... . . .... .................................... . ...... ... . . . . .. . . ...................................... . .. . . . ... ............. ... ... .. .. . . ... . . . .. .. ................... ... . ................................... . ... . . . . ........... . .. .. ... . . . . .............. . . . . . . ........ . ....... ... .... ...... .. . .. . . . . .... .. .. . . . ... . ......... . ... . ..... . . ..
lowQualScore : 0 2 8 8 7 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 11111111 00000 7 55555555555555555555 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 333333 00000000000000000000 7 7 7 333333333333 7 0 5 2 666 3 7 7 333333 4 7 0 333333 0 99 0 2 0 888 7 333 1111 9 4 888 0 9 0000 444444444444444444444444444444444444 0 444444 444 2 1 0 4 99 0 9 66666666666666666666666666666666666666 0 77 3 3 7 000 1111111111111 000 666 44 00 0 8 000 8 0 0 00 00 8888888888888888888 888 7 00000000000000000000000000000000000 7 777 7 7 5 7 11111111111 0 66 11 888 0 4 9 7 88888888888888 5 3 7 2 7 7 77777777 2 8888888 000 2222 222222 66 8 00 4 0 8 2 2222 22 22 2 4 2 555 2 000000000 2 555 2 88888 3 0 55
consensus : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CG---AA--------A------TA------T--A---GT-----A-------G-T--TTCC-CC----CG-G--AAA---------AT-GTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCATGCATA--C------------TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTC-ATTC--AGTCGA-A---TGTTAT-GTAAAACAAT--C-ATAT-TT-----------------G----TAA-------ANTCAGA------ATAT--TTCGTGCTTGTAAAA-CAGCACCT-ATTCAGGCAAC-C--AGATAT---CG--TTAAA--C--AGATA-G-AAGTATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT----T-AAATTTT------ACAACTCTGTTG-ATTGCCTACCCGCGATTC-AAA-TTGCC--C------------T--CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTAC-TTTGAT-C-GTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
Reference ( family-698 ) : NATAGTAGTNTTTCCCCCTAGCCATCTTTCCCCC-CG---AA--------A------TA------T--A---GT-----A-------G-T--TTCC-CC----CG-G--AAA---------AT-GTGG-CTATATA--------GTAGGATTTC--C--CCTTTT-ATAGCCAGATGAC-------CCCCAC-------GNAAAACCT---------------------ACTATGTA--CA-TGTATA--CCG----TAGAA-CGCCCCC----TCTCATTCCG-------------GTT-ACGTTTACGGCGGACCATTCCCATGCGTA--C------------TTTCCATTCTGA-AATTAA---NC-------CTTTCCTGGCTATTCATTTCTTTTATATCCT-AAATGGAGAGTTAAT---TTCCGAATTCC-CTTGANTG-G--G-TTTTTNG--AAATA-TTCATTATTCAACAAACA---TCATNTC-ATTC--AGTCGA-A---TGTTAT-GTAAAACAAT--C-ATAT-TT-----------------G----TAA-------ANTCAGA------ATAT--TTCGTGCTTGTAAAA-CAGCACCT-ATTNAGGCAAC-C--GGATAT---CG--TTAAA--C--AGATA-G-AAATATTTATCGTACGATGAATCAA-AAT---TGT------C------CAT---TTGATTAANA-CAAAAAC--TTCNTACA---GATAGTGG-A--GT-AAAAT----T-AAATTTT------ACAACTCTGTTG-ATTGCCTACCCGTGACTC-AAA-TTGCC--C------------T--CTAAGGAATCAACTCGCT---CTCTCGCTAGACACGATT-----------CTTAACACNTCATTAGGAGAAA---GTGGGATTTTTCAATTAGATTAGAGG-TTTTTGAGAGGAA------------ACTTTCTCCCCAANT-GTTCTCTGGTCATTG-GT-G---ACG--TTGTGCGA-CC-TAT---TATCG---ATGTA------ACTATTCCAGGCGGTGCAACTC--CCAGCTGTACTGTCAGTAC-TTTGAT-T-GTA--TACATGAATCTGACAAATAGACA---TCGTCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGAAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTNTTTATAGCTCGCCTG
gi|1 : ATAGTAGCCTTTCCTCCCAACCATCTTTCCCCC-CG---AA--------A------TA------T--A---GT-----A-------C-T--TTCC-CC----CG-G--AAA---------AA-ATGG-CTATATA--------GCAGGATCCC--C--CCTTTT-ATAGCCAGATGAC-------TCCCAT-------GGAAATCCT---------------------ATTATGTATACA-TGTATATACCGGTAGTAGAAACACCCCC----TCTCATTCCG-------------GTA-ACGTTTACAGCGGACCATTCCTGTACATATGC------------TTTCCATTCTGA-AATTAG---GC-------TTTTCCTAGCTATT-ATTT--TCTATATCCT-AAATGGAAAGTTAAT---TTCTGAATCCC-CTTGATT-------TTTTTT---AAATA-TTTCTTATCCAGCAAACA---TCATATC-AGTC--AGTCGG-A---TGTTAT-GTAGAACAAT--C-A-A---------------------------AA-------AATCAGA------ATAT--TTCGTCCTTGTAAAA-CAGCACCT-TTTTAGGCAAT-----GCTA-----G--TTAAA--T--AGATACGCAAGTATTTATCGTACGGGGAATCAC-AAT---TGT------C------CAT---TTGATTTACA-CACAAAC--TTCATACA---AATAGTGG-A--GT-AAAAT----TCAAACTCT------ACAACTCTGTTG-ATTGCCTACCC-CGATTCCAAA-TTACCG-C------------TA-CTAAGGAATCAACTCGAC---CTCTCACTAGACACGATT-----------CTTAACACCTCATGTGCAGAAA---GTAGGGTTTTTCA-TCAAATTAGAGG-TTTTTAGCAGGAA------------ACCTTCCCCCCAGCT-GTTCTCGGGACATTG-GTAG---ATGAATTGTGTGAACC-TAT---TGTCG---ATATA------ACTATTCCAGGCAGTGCAACTC--CTA-----ACTGCCAATACATCT--T-C-GTT--TACATGAATCTGACAAATAGACA---TCATCAT--A----T-TTATTCCCATTCGAAG---AATATTCTGGGAAAG-----TTTTGATTTTTAGCATGCACTCCCAAAACTTCTTTATAGCTCGTCTG
gi|10 : tGTAGTGTTTCCCCCAAGCCATCTTTACTCC-TG---GA-----------------------T--A----------A-------A-T--------C----CG-G--AAATGTGGCTATATAGTGG-CTATATA--------GTAAGATTTC--C--CC---T-ATAGCCAGATGAC-------CCCCAC-------GGGAAACAT---------------------ACTA-GTA--TA-TATATA--TCG----TCGAC-TGCCC---------TATTTCA-------------GT--------------GANCATTCCCAT-CG-----------------TTTCAATTCTAA-AATTAA---TC-------CTTTTCTGGTTATTTATTTCTTTTAT
gi|11 : TGTG------ACTATTCCAGGTCGTTC--CTCGTCCAGCTGTATTGTCAGTAC-TTTAATAC-ATAAGTACACAAAGTTTACAAA
gi|11 : ataatAATTTGACAGATAGACAACATCATCAT--A----TCTTATTCCCATTTGAAG---AATATTCTTGAAAAG-----TTTTGatttatcctcttcaagtgaatttatctttaatttgacagatagacaacatcatcatatcttattcccatttgaagaatattcttgaaaagttttg
gi|12 : ataattgtgactattccaggtcgttcctcgtccagctgtattgtcagtactttaatacataagtacacaaagtttacaaaatttatcctcttcaagtgaatttatctttAGCC--CTTTCCCCCGCA---AA--------A-------A------T--G---GTTATGAA-------G-TGGTTCC-CC----CG-G--TAA---------AA-ATAG-CTACATAGTACAT--GTAGGTCTTC--C--CC
gi|12 : TTCCCCC-GGTAAAA--------A------TAGCTACAT--A---GT-----ACATGTAGG-TC-TTCC-CCAA--CG-G--GAA----------T-ATGG-CTATATATACATGTAGTAGGATTTCATC--CATTTT-ATAGCCAGATTAT-------TTCCAC-------GCACAACCT---------------------ACTATGTA--Caacgggaatatggctatatatacatgtagtaggatttcatccattttatagccagattatttccacgcacaacctactatgtac
gi|13 : agccctttcccccgcaaaaatggttatgaagtggAACA---TCAT--C-ATTC--AATCGA-AATTTGATAT-GTAAAACAATGAT-ATAT-TTAAAAT------------G----TAA-------ATTCAGA------ATAT--TCCCTGCTTGTAAAA-CAGTACCT-ATTCAGCTAACTC--AGAATT---CG--TGAAA--TAAAGATA-C-AAATATTCAGCGTAT-ATCATTTGA-AAT---TGT------C------
gi|14 : tTA-ATTGCCTACCTCTGATTCCAAA-TTGCCACC------------G--CTAACAAATCACCTCGCT---CTCTCACCAGGCATGATT-----------CTTAACACGTCATGAG--GAAA---GTGAGATTTTTCAATTAGATTGGGGGCTTTTCGAAGGGAA------------A
gi|15 : ATAGTAGTATTTCCTCCTAGTCACA--TCCCCC-GG---AAAAATAGCTA------TA------T--A---GT-----A-------GTT--TTTC-CC----CG-GCCAAA-------------TGG-CTAtaggtgatatataa
gi|16 : tga---TATCG---ATGTACTCGTAACTAATCTAGGTCGTGCAACGT--CCAGTTGTATTGTCAATAA-T---AT-T-GTG--TACAT
gi|17 : aGAAA---GTGAGATTTT-CAATT----TAGAAG-TTTTAGAGAGGAA------------TCTTTTTCTTCAAAT-GTTCTCTAGTCATTG-GT-G---acataat
gi|19 : GATT-----------CTCAACACCTTATGGGGAGAAAAAGGTGAGATTTTTCAATTAAAT
gi|2 : t--------A------TA------T--A---GC-----A-------G-T--CCCCTCC----C-----AAA---------AT-GTGG-CTATATT--------GCAGGGTTTC--CACCCTTTT-ATAGCCAGATGAC-------CCCCTCCTCCCCTTGAAAACCT---------------------ACTAT--------TG-ATC--CT--------AA-CCCCCCC----CCCCCCCCCGGGTTCTTTTTTTCGTT-ACATTTACGACAGACCATTCCCATACATATTC------------TTTCCATTCTGATATTTAAAATCC-------CTTTCCTTGCTATTCATTTCTTTTATATCCC-AAGTGGAGAGTTAAT---TTCCGAATTCC-CTTGATTGTA--A-TTTTTGG--AAATA-TTCATTATTCAACAAACA---TCATC-----TC--AGTTGA-A---TGTTAC-GTAAAACAAT--C-ATGT-TT-----------------AGCCTTAG-------ATTCAGAGTACCTGTAT--TTCGTGCTTGTAAAA-CACCTTCTAATTCAGCAAAC-C--TGTTA-----G--TTTAA--C--A---A-A-AAATATTTATCTTATGAGGAATCAA-AAT---TGT------T------CCTCTCTCGATCGATC-C----AT--TTCCTACA---G--AGTGA-A--GT--AAAT----C-AAA------------AA-----TTG-ATTGCCCACCC---------------CC------------------------AATCAACTCGCT---CTCTTGATAGACGCGAAT-----------CTTAACACATCATTATGAGAAA---GTGGGACTTTTCAATTAGACT-GAGG-TTTTTGAGAGGAA------------A-TTTATGCCAAAAT-GTTCTCTGGTCATTG-AT-GTGCATG--TTATG-GA----TATTTATATCGTACATGTA------ACTATTCCAGGGGGTGCAACTC--CCAGCTGTACTGTCAGTAC-TTTGAT-T--TA--TA----AAT---ACAAAT----T---TCCCCATTGA----TGTTATTTTGAATCATAGATTAATATTTTGGA----TTTTTTTTTTATTTTTAGCATGCACTCCCAAA
gi|3 : atatCCCC-CG---AA--------AGACAGATA------TCTA---GT-----A-------G-A--TCCC-CTA---CG-G--AAA----------T-GTGG-ATATATA--------CTAAGATTAC--T--CCTTTTCATGATCAGATAAC-------CCT----------GTAAAACCT---------------------A--ATATA--CC-TGC-----CC-----------CACCCCC----TCT---------------------------TTT---------CATTCCCATGGATA--C------------T---------GA-AATTAA---TCGGGGTTTCTTT--TTACAATTCATTTCTTTT-TATCGT-AAGTGGAAAGTTGTTCTTTTACGAATTCC-TTTCAAAG-G--A-TTTTTTG--AATTA-CTTACTTTTCAACAAACA---TCATTTC-A-----------------ATTA----AAAACAGT--C-ATAT-----------------------------------AATCAGG------ATAC--ATCTTGCTTGTGCAA-CAACA-AT-ATCAAGGCAAC-C--AAACATTTCTGATTTACA--C--AGATA-G---GTATTTATCTTACGAGGAATCTA-AATGTATCT------C------CAT---TTCACTATAA-CAAAAACGTTTCCTACA---GATAGTGG-A--TT-TAAATG---T-TAATTTT------ATAA--CTGTTG-ATTACCTAACTGTGACT--------------------------T--TTAAGGAATCGACTTGcc
gi|4 : cttcaagtagtcgtgacaTTCATTTCGTT-ATATTTT-AAATGGAGAGTTAAT---TTACGAATCCC-CTTGATTG-G--G-TTTTTTG--GAATA--TCATTATTCAAGAAACA---TTATATCAATTC--TGTTGA-A---TGTTAT-GTAAAGGAA-----ACAT-TT-----------------A----GAATGCATTTAATCAGA------ATAT--TTAGTGTTTGTTACG-CAGCACCT-ATTAATGCGAC-TG-GGATAT----G--CTAAA--T--A-AT-------TATTTGTCGCACGATGGATCAA-AAT---TGTCTCTCGC------CAT---TTGATTAAA---GAAAAC--CTTTT-CA---GATA---G-ATTGT-AAAAC----T-AAAATGT------ACAACT-TGTTG-ATCATTTACCCCCGATTC-AAACTTGCCG-CTACAATAGTAAAT--CAAAGGAATCAAATCGTTCAGCTCTCGCTAGACATGATTAAAAAAAACAAC--AACACCTCATTAGGAGAAA---GTGGGCGTTTCCAATTAGATTAGAGG-TTTTTGGGAGTAA------------AATTT-TCCCCAACT-GTTCTCGGGTCCTTA-AT-G---
gi|5 : AATAATTTATTAATCAACAAAAAAACTAAT-TC--TTT--AGTTGAGA---TGTTATTGTAAA-TAAT--C-ATA----------------------------A-------ATTTAGA------A--------G-GCTT--AAAATCAGAA--T-ATCTAGGCAA---------AT---CG------------------G-AA---TTTGT--TA--GTGAATCCA-AAT---TGT------CTCTCTTCAT---TTGATTAACAACAAAAAC--TCCATACACGAGACACTGGCA--GTTAAAATCGGTT-AGATTTTCAATATACTACTTTGTTCTATTGCCTTTACGTGCCT---GA-TT-----T------------T--CTCACAAATCAACTCGCT---CTCTCGCTAG-CCCAA-T-----------CTTATTA-TTGATTCGG---AA---G--------TTAAGTTA----AGAGG-TGTTTGAGAGGAACAACCCCCCTCCACCCCCCCCCCAATCAGT----TGGTAATTA-AT-G---AGA--TTGTGC---CCATGT---TATC----ATATA------Ag
gi|6 : T------ACAACTCAGTTG-ATTGCCTACCCATGATTCGAAA-TTGCC--G------------TTACTAGGGAATGAACTCGTT---CTCTC-----------TT-----------CTTAACACGTCAATAGGAGAAA---GTGGGATTTTGCAATCAAATTTGC---TTTTTAAGAGAAA------------GGTTT---------T-GTTCTATAATT-TTGCGT-G---ACA--TTG---GA----TAT---AATCA---A---A------ACTATTGCAGGCGGCGCAACTC--CCTGTTGTACTGACAGTAC-TTTGAT-TCATA--CACAT
gi|6 : TGAT-T-TTA--TTT-TGAACCTGATAAATAGACA---GCGTCAT--AATAGT-TCATTCCTATCCGAGG---GATATTCTGGAAAAG-----TTTTGATTTTT---------TCCGAAAACTTATT--TAGCTCACCTGtcgttttgcaaaatttcctcagcaaaatttcttctgaaatgattttattttgaacctgataaatagacagcgtcataatagttcattcctatccgagggatattctggaaaagttttgattttttccgaaaacttatttagctcacctg
gi|7 : tacaactcagttgattgcctacccatgattcgaaattgccgttactagggaatgaactcgttctctcttcttaacacgtcaataggagaaagtgggattttgcaatcaaatttgctttttaagagaaaggttttgttctataattttgcgtgacattggatataatcaaaactattgcaggcggcgcaactccctgttgtactgacagtactttgattcatacacattcgttttgcaaaatttcctcagcaaaatttcttctgaaaCCCTAGCAATCTTTCTCCC-CGGA-AA--------A------TGGC----T--ATTTGT-----A-------G-A--TTCT-CCTCCACGTT--AAA---------AT-GTGGAC--TATA--------GTAGGATCCC--C--TTTTTT-ATAGTC-GATGACAACCCAACCCCCC-------CCAAAACCCCCCCCCCCCCCCCCCCCCTAAACTATG-A--CACTGTA------G----TAGAA-TACCCTCCGTTTTTCATTCCA-------------GTTCACGTTTACGAAGGACCATTCCCATGCATA--CAAATTACATATATCTCCATCCTGA-AAT------AC-------CTTTCGGGGC---TTAT---TTTTATTTC---AA----------AAT---T--CGAATTTCACTTGATTG-G--G-GTTTTCGAAAAATA-TTCATTGT-----GAACA---TAATTTC-ATTCTTCGTCGA-A---TAT
gi|8 : gtaagcctttaTCATTCCG-------------ATT-ACGTTTACGGCAGACTATTCCCAT-C-----C------------TTTCCATTCTAA-AATCAA---TC-------CTTTTCTGGTTATTTATTTCTTTTATATCCT-AAAT-----CTTAAT---TT--------C-CTTGAATG-G--GTTTTTTGG--AAATA-TGCACCATTCAACAAACG---TCGTTTC-ATTC--AGTCGA-A---TGTTAT-GTAAAACAAT--C-ATATATTAATTTTAGAATGTTAGTG----TAA-------ATTAAGA------ATAA--AGCGCGCCTGTAA----AGCACTT-ACACAAAC--C-C--AGAT-T---C----CAAA--C--AG
gi|9 : TTTATTTCTTTTATATTTTTAAATGGAGAGTTATT---TGCTGA--TTC-CTTGAATG-GAAG-ATTTGGG--GAATA-TT-------------------TTATGTC-ATT----------A---TGTTAT-GTATAGCAAT--TTATAT-TTTCGGAT-----------G----GAA-------AGTTAGA------ATATGTTTTGTGCTTGT--AA-CAA-ACAT-ATT-AGGCAAC-CCAAGATAT---TG--TTAAAGGC--AGGTA-G-AATTATTTATCAATTGATGAATCAAGAAT---TCT------C------ccgtcactatcaaatgattctcaacaccttatgggga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATCTGATGTTATTGATTCGTATGAATTAGAAGAAGCCCTAGAGGGGGCCAAGCCCCCCCCCCCCCCCCCCC