lowQualScore : 1111111111111111 11111111111111111111111
lowQualScore : 22222222 444444444 3 2 11111111 222222 444444 22 111 111 222 222222 111 22 11111 33 222222222 1111 1 3 0000000000000000 111111111 777777777777777777777777777777777 111 33 22222222 111 1 11 3 00000000000000000000000 11 11 1 11111 222 33333333333333333333333333333333 111 1 22 1111111 11 222 33 2 33333333333333 2 1111111 3333333333 4444444444444444 3
lowQualScore : 2 2 2 22 22222222 22 2 2 3 4 2 111111111 2 2 2 0 2 4 0 0 55555555 55 777777 4 2 22 555 2 000000 22 4 777 4 5555 2 55 2 2 22 55555 2 2 22 4 4 3 888 2 555 22 444 22 555555 111 2 2 2 4 44 1 0 3 1 1 1 22222 99 2 2 66 1 1 1 22 1 1 333 7777 333 1 999999999 3 5555 44 6 2 4 2 2222222222222222 888888 22 666 2 2 2 77 2 2 111111111 444 33 2 2 2 777777777777777777777777777777777 2 555 33 888 444 7 00 444 2 55555555 5 333 0 3 44 77 88 44 4 3 22222222222222222222222 4 66 2 2 666 333 2 2 22 2 44 5 1 2 2 6 22 333 00000 1 1 1 3 44 1 555 2 4 999 6 2 77 333 77777777777777777777777777777777 2 666 2 3 0 4 4 66 2 7 2 8888888 2 333 66 2 44 2 2 999 0 2 22 00 0 4 22 2 1 2 22 99999999999999 6 2 2 3333333 2 8888888888 2 7777777 2 2222222222222222 2 3 2 2 3
lowQualScore : . . . .. ........ .. . . . . . ......... . . . . . . . . ........ .. ...... . . .. ... . ...... .. . ... . .... . .. . . .. ..... . . .. . . . ... . ... .. ... .. ...... ... . . . . .. . . . . . . ..... .. . . .. . . . .. . . ... .... ... . ......... . .... .. . . . . ................ ...... .. ... . . . .. . . ......... ... .. . . . ................................. . ... .. ... ... . .. ... . ........ . ... . . .. .. .. .. . . ....................... . .. . . ... ... . . .. . .. . . . . . .. ... ..... . . . . .. . ... . . ... . . .. ... ................................ . ... . . . . . .. . . . ....... . ... .. . .. . . ... . . .. .. . . .. . . . .. .............. . . . ....... . .......... . ....... . ................ . . . . .
lowQualScore : 1 1 1 99 33333333 99 1 1 9 2 1 999999999 1 1 2 3 2 4 0 9 55555555 00 222222 2 1 99 888 1 222222 22 2 444 7 0000 4 33 2 1 99 33333 0 0 88 0 1 2 000 0 444 88 111 88 555555 000 0 0 1 2 00 9 7 8 9 9 9 11111 66 0 0 00 9 9 9 66 9 9 666 4444 444 2 777777777 3 1111 22 9 9 0 7 3333333333333333 222222 99 666 1 1 1 55 2 2 222222222 777 77 7 7 7 333333333333333333333333333333333 9 000 99 888 444 5 99 111 4 77777777 3 000 4 7 22 00 55 22 2 1 00000000000000000000000 4 22 2 2 999 777 0 0 88 0 00 2 9 0 0 3 88 555 99999 9 9 9 8 55 9 222 0 1 222 0 0 55 555 33333333333333333333333333333333 0 111 0 2 0 0 0 44 0 8 0 2222222 2 999 22 4 66 4 2 555 8 9 99 66 4 2 99 1 1 1 99 11111111111111 1 2 2 6666666 1 9999999999 1 3333333 1 6666666666666666 1 4 1 1 7
consensus : GTCTC-CA-T-CTTTTTTG--GGATC-AAAAT-TGT--AGG-TCAC-CGCTAT-A-AGAA--C-TCT--ATATTT-CTT-TTG-T-T-CT-CCATTTCAG-CGCCC-AA--CAA--ACA-CAT-A-CGA--T---GTTTA-CCG-G--AAC-C-CCCTT-C-TTGTA-C----CT-CC-TA-TA-G--A-----CTCCCTTA-C-C--TCAC-CCCCTCTATA-ACACTGAC-ATTG--A--CCCTC-CAAA--CTGAA---T--GCT---TC-GTTG-CC-CAG-ATTAAAAA-TC-CGC-TG-TCT-AAA-C-N-G-CTCAT-A-A-CTTC-CG-GTTT-GC-CG--A-T-TGTCT--CGGC---G-G-TACGCCGATA--GTCC--TAACG-GTT--TTAC--ACGCGCTCTC-ATT-GGCT-ATTG------TTT-GTATTCTC---A--AACTC--TT-T-A-G-T-CAC--T-G-AAAA------C--C---AA--A-AAAAG-TTA-GC--GTG--A-TG---CGCGCTCT--CATTG-GC-TAAC-TTT---TT--TTGG---TT---T-CAG-T---GA-CT--A-AA--GA-GTTT---GAGAATACCA--ATAGCC--A--ATG-AG-AGCGCGT---GTNA--AAC-CGTTAG----GAC-TATCGG-CGTA-C-C---GCCG--AGACG-A-T--CG-GC--AAAC-CGG-AA-GTTNT--G---AG-C-N-G-TTT-AGA-CA-GC-G-GA--TTTTT-AATCTG--GG-CAAC-GA--AG---C-AT---TCCAG---TTT-GAGGGTTCA--AT-GT-CAGTGT-T-ATAGA-GGG-G-TGAG--G-TAAGG-GGAGT--TCTA-T---AG-GA-G-GTAC-AA-GAAGGGGG-TTTCCGGTAAAC--A--TCGT-A--TG-TGTT-TG--TT--G-G-GCG-ATG-AAAT-G-GAGAA-CAAAAGAAA-N-ATA-G-A--GTT---CT-T----ATAGCG-GTGAC-CT--AC-AT-TTCG-ATCC-CAAAA-AAGA-TG-GAGAC
Reference ( gi|2 ) : GTCTC-CA-T-CTTTTTTG--GGATCCAAAAT-TGT--AGG-TCAC-CGCTGT-A-AGAAA-C-GCT--ATATTT-CTT-TTG-TGT-CT-C-ATTTTAT-CACCC-AA--CAA--ACAACAT-A-CAA--T---GTTTA-C---G--AAC-C-CCCTT-T-TTGTA-C----CT-C--TA-TA-G--A-----CTCCCTTA-C-C--TCAC-CCCCTCTGTA-CTATTGAC-ATTT--A--CCCTC-CAAA--CTGAA---A--GCT---TC-GTTG-CC-CAA-ATTAAAAATTC-CGC-TG-TCT-AAA-C-T-G-CTCATCA-A-CTTT-CG-GTTT-GC-CG--A-T-TGTCT--CGGC---G-G-TACGCCGATA--TTCC--CAACG-GTT--TAAC--ACGCGCGCTC-ATTCGGCT-ATTGT-TTCTTTTCGTATTATC---A--AACTC--TT-C-A-G-T-CAC--T-G-AAAA------C--C---AA--A-AAAAG-TTA-GC--GTTTTACTG---CGCACTCT--CATTGCGT-TAAC-TTT---TT--TTGG---TT---T-CA--T---GA-CT--G-A---GA-GTTT---GATAATGCCA--ATAAGC--A--ATGCAG-AGCGCGTACTGTTA--AAC-CGTTGGAATGGAC-TATCGC-CGTA-C-C---GCCG--AGACA-A-T--CG-GC--AA-C-CGG-AA-GTTAT--G---AG-C-A-G-TTT-AGA-CA-GC-G-GA--TTTTT-AATTT---GG-CAAC-GA--AG---C-TT---TCCAG---TTG-GAGGGTTCA--A--GT-CAATAG-T-ACAGA-GGG-G-TGAGA-G-TAAGG-GGAGT--TCTA-T---AA-GA-G-TTAC-AA-GAAGGGGGTTTTCCGGTAAAC--AT-TTGT-A--TG-TG-T-TG--TT-GG-G-GCG-ATA-AAATGG-GAGAA-CAAAAAGAA-A-ATA-G-C--GTTG--CT-T----ACAGCG-GTGACACT--ACGAT-TTTGCATCC-CAAAACAAGA-TG-GAGGC
gi|4 : GTCTC-CA-T-CTTTTTTG--G-ATC-AAAAT--GT--AGG-TCAC-CGCTG-----AAAA-C-TCT--ATATTT-CTT-TTG-T-T-CT-CCATTTT-T-CGCCCCAA--CAA--ACA-CAT-A-CAA--C---GTTTAGC---G--AGA-C-CCCTT-C-TTTTA-C----CT-CC-TA--A-G--A-----CTCCCTTA-C-C--TCAC-CCCCTCTGTA-ACATTGAC-AATG--A--CCCT--CAAA--CTGAA---T--GCT---TC-GTTGCCC-CAG-ATTAAAAA-TC-CAC-TG-TCT-AAA-G-T-G-CTCAT---A-CTTC-CG-GTTT-GC-CG--A-T-TGTCT--CGA----G-G-TACGCCGATA--GT-C--TAACG-GTT--TTAC--ACGCGCTCTC-ATT-GGCT-ATTG----------GTA-TATC---A--GACTT--TT-C-A-G-T-CAC--T-G-AAAA------C--C---AA--A-AAAAG-TTA-GC--GTGTTAC-G---CGCAATCT--CATTG-GC-TAAC-TTT---TT--TTGGTGTTT---T-TAG-T---GA-CT--GAA---GA-G-TT---GATAATACCA--ATAGCC--A--ATA-AG-AGCGCGTG----TA--AAA-CGTTA----GGAC-TATCGG-CGTA-C-C---GCCG--AGACA-A-T--CG-GCA-AA-C-CGG-AA-GTTAT--G---AG-C-ACA-TTT-AGA-CA--T-G-GA--ATTTT-AATCTG--GG-CAAC-GA--A----C-AT---T-CAG---TTT-GAGGG-TCAATA--GT-CAATCGTT-ACAGA-GGG-G-TATGA-G-GGAGG-GGAGT--
gi|1 : tgGTCTC-CA-T-CTTTTTTG--GGATC-AAAAT--GT--AGG-TCACACGCTAT-A-AAGAA-C-TCT--ATATTT-CTT-T-G-T-T-CT-CCATTTTAT-CGCC--AA--CAA---CA-CAT-A-CGA--T---GTTTA-CC--G--AAC-AGCCCAT-T-TTGTA-C----TC-C--TAGTAAG--A-----CTCC--TA-C-C--TCAC-CCTC---ATA-ATATTGAC-ATTG--A--CCCTCACAAAAACTGAA---TT-GCTGC-TC-GTTG-CC-CAA-TTAAAAAAATCACGC-TGGTCT-AAAAC-TAG-CTCAT-A-G-CTTC-CG-GTTT-GC-CGCAA-T-TGTCT--CGGCCCGG-G-TACGC--ATAAGTCCT--AAACGCGTTATTTAC--ACGCGCTCTC-ATT-GGCT-ATGGT-GACTTCC-------TC---C--AACTC--TT-TTA-G-T-CAC--TTG-AAAA------C--C---AA--A-AAAAG-TTA-GC--A-------G---TGCA-TCT--CATTG-GCATAAC-TTT---TT--TTGAGT-TT---T-CAAGT---GA-CT--A-AA--GA-GTTGAGAGAAAATACCA--ATAGCC--A--ATG-AG-AGCGCGT---GT----AAC-CGCTATA--GGAC-TATCGG-C-TA-C-CCC-GCCGCAAGACA-AAT--CG-GCCAAA-C-CGG-AAAGCTATTTG---A--C-A-G-TTT-AGA-CA-GC-G-GA--TTTTT-AATCTTGAGG-CAACTGATAAG---C-AT----ATAT---TTT-GAGG--TCA--T--GT-CAATAT-T-ATAGA-AGG-G-TGAAA-GGTAAGG-AAGTT--TCTA-T---AG-GA-G-T-AC-AAAGAAGGGG--TTTCCGGTAAAC--AAATCGT-AATTG-TGAT-TG--T---G-G-GCG-ATA-AA-TGA-GAGAA-CAAAAGAAATA-TTA-GAA--GATT--CTAT----ATAGCG-GTGAC-CTAAAC-AT-TTTG-ATCC-CAAAA-AGAA-TG-GAG
gi|3 : GTCTC-CA-T-CTTTTTTG--GCATC-AAAAT--GT--AGG-TCAC-CGC-AT-A-AGAA--C-TCT--ATATTT-CTT-TTG-T-T-CT-CCATTTTAT-CGCCC-AA--CAA--ACA-CATTA-CGA--T---GTTTA-CCG-G--AACAC-CCCTT-C-TTGTA-C----CT-CC-TA-TA-G--A-----CTTCCTTA-C-C--TCAC-CCCCTCCATA-ATATTGAC-ATTG--A--CCCT--CAAA--CTGAA---T--GCT---TC-GTTG-CC-CAG-ATTAAAAAATC-CGC-TG-TCT-TAA-C-T----TCAT-A-G-CTTC-CGCGTTT-G--CG--A-T-TGTCT--CGGC---G-GCTACGTCGATA--GTCC--TAACG-GTT--TTAC--ACGCGCTCTC-ATTGGGCT-ATTG----------GTATTCTC---C--AACTC--TT-T-A-GTT-CAC--T-G-AAAA------C--C---AA--A-AAAAG--TA-GC--c
gi|3 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcggcggtacgtcttcattgGTCTC-CAAT-CTTTTTTG--GGATTCAAGAT-TGTTCAGGATCAC-CGCTAT-A-AAGAA-----T--CTAATT-CTT-TTG-TTTGCT-CCATTTTAT--GCCC-AATTCAT--ACA-CAT-A-CGA--CTCGGTTTA-C---GG-AAA-C-CCCTT-C-TTGTA-CGTCTTT-C--TA-TA-G--ATGAGTCTGCTTTA-C-C--TCAC-CCC-TCCATAATTATTGAC-AATT--GACCCCTC-AAAA--CTGAA---T--GCT---TC-GTTG-CC-CAG-ATTAAAAATCC-CGC-TG-TCT-AAA-C-T-G--TC-TAA-A-------G-G-CT-GCTCG--A-T-TGTCT--CGGC---G-G-TACGTC
gi|7 : GTGTC-CA-T-CTTTTTTG--GGATCGAAA---TGT--AGG-TCAC-CGCTAT-A-AGAA--C-TCG--ATATTT-CTT-TTA-T-T-CT-CCATTTCAG-CATCT-AA--CAA--A-----------A--T---GTCTA-CCGGA--AAC-C-CCCTT-C-TTGCA-C----CT-CC-TA-TA-G--A-----CTCCCTTA-C-C--TCAC-CCCCTTTATA-ACACTGAT-ATTG--A--CCC-C-CAAA--TTGAATTTAATGCT---TC-ATTG-CC-CAG-ACTAAAAA-TA-CAC-TG-TCT-AAA-C-A-A-CTCAT-A-A-CTTC-CG-GTTT-GC-CG--A-T-CGTCT--CGAC---G-G-ttcattggctactttttttggttttcagtgaactaaagagttggagaataccaatagcccaatgagagcgcgtgtaaaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|8 : GTGTC-CA-T-CTTTTTGG--GGATC--GATT-TGT--AGG-TCAC-CGCTGT-T-TGAA--C-TCG--ATATTT-CTT-TTA-T-T-CT-CCATTTCAG-CATCT-AA--CAA--ACA-CAT-A-CGA--T---GTTTA-TCG-G--AAC-C-CCCAT-C-GTGTA-C----CC-CC-TA-TA-G--A-----CTCCCCTA-C-C--TCAC-CCCCTCTATA-ACATTG-C-ATTG--A--CCCT--CAAA--TTGAA---T--ACT---TT-ATTG-CC-CAG-ACTAAAAA-TC-CAC-TG-TCT-AAA-C-A-A-CTCA-AA-A-CTTC-CG-GTTT-GC-CG--C-T-TGTCG--CAGT---G-T-TACGC--ACA--CTCT--CActctcattggctattggtattctcaaactctttagtcacaatgaagcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|5 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaactctttagtcactgaaaaccgaataaaaagatagccaaGTGTC-CG-T-CTTTTGGG--GGATCGAAA---TGT--AGG-TCAC-CGCTAT-A-AGAA-----CTTGATATTT-CTT-TTA-T-T-CTCC-ATT-----------AA--C-------ATATGA-CAA--T---GTTCA-CCGGA--AAC-C-CCCTT-C-TTGCA-C----CTCC--TA-TA-A--A-----CTCCCTTA-C-C--TCAC-CCCCTCTATA-ACACTGAC-ATTG--A--CCCT--CAAA--CTGAA---T--GCT---TC-ATTG-CC-CAG-ACT-AAAACTC-CAC-TG-TCT-AAA-C-G-A-CTAA--A-A-CTTC-CA-GTTT-GC-CG--A-T-CGTCG--CGGT---G-C-TACc
gi|12 : cccttaacctcaccccctctataacactgacattgaccctcaaactgaatgctgtcatgcccagactaaaatccactgtataaacgactcaaacttttggtttgccgatcaccgcgacggtgttacacgcgctctcattggctattggtggtctcaaactttttagtcatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggctatttagtcagtgaaaaccaaaaaaggttagccaatgagagcgcagGTGTC-CA-TTCTTTTTGG--GGATCGAAA---TGT--AGG-TCAC-CGCTATTA-AGA---C-TCG--A-ATTT--TT-TTG-ATT-CT-CCATTTCAG-CATTCTAA--CAA--ACA-CAT-A-CAA--TT--GTTTA-CCG-G--AAC-CACCCTT-TCTTGTAAC----CT-CC-TA-TA-G--A-----CTCCCTTA-C-C--TCAC-TCCTTCTGTA-ACACTGAC-ATTG--A---CCTC---AA--TTG-A---A--GCT---TC-ATTA-CC-CAG-A-CAAAAAATC-CACTTG-TCT-AAA-C-A-A-CCAA--A-A-CTTC-CG-GTTT-GC-CG--A-T-CGTCC--C-----------------------------AACG-GTT--TTACAAACGCGCTCTC-ATT-GGCT-ATTGTATTC
gi|9 : GTCTC-GA-T-CTTTTTTG--GGAT--AAAAA-TGT--AGG-T-A---GATAC-A-AGA------TT--AT-TTT-CTT-TTG-TTT-C--C-ATTT-AT-CGC---AA--CAA--ACA---T-A-CGA--T---GT--A-C---G--GAA-C-ACTTC-T-TTGTA-------T-C--TA-TA-G--A-----TT---TTA-C-T----AC-TCC----ATA-ATATTG-C-AATTGAA--CTCTC---AA--CTGGA---AT-GCT---T--GTTG-CC---A-GTTTAAA--TC-CGC-TG-TAT-AA--C-T-GGTTCAT-A-G---TT-CA-GTTT-GC-CC--G-T-TGTCT--CGGC---G-G-TACG-CGATA----GC--TAACG-G-T--TAA---ACGCGC-CTC-ATT-GG-T-A---------TTTGGTATT-TCCCAG--AACTT--TT-A-A-G-T-CAC-------GAA------C--C---AA--A-AAAGT-TTA-GC-------AATGAGAGGCA-----------CGC-TAAC-TTT---TT--TTAA---TTATAT-TT--T---TC-TT--G-A---AC-GTTT---GATGATAC------AAGC--GCTGTGCAGTAATGTGTA
gi|14 : tGTCTT-CA-T-CTTGTTTG--G-ATCAAACAT--GT--AGG-T-AC-CGCAAT-A-AGAA-----CTC-ATAATT-CTT------GT-CT-C-CATTTAG-C-CGC-AA--CAA---CAGCAT-ATCGA--T---GTTTC-C---G--GAA-C-CC-TT-C-TTGTC-C----CT-CCTTA-TA-G--A-----TTCCATTA-CAC--TCAC-CCC-TCTATAATTATTGA---TTG--A--CCCT---AAA---TGAA---T--GCTCCTTC-GTTG-CC-CTA-GATAAAA--TC-CGC--G-TTA-AAA-C-T-G-CTCACCATA-GTTA-GG-GTTT-AC-CG--A-TCTGTCT--CGGC---G-G-TACGCga
gi|15 : aGTCCT-CA-T-CTTTTGGG--GGATC-AAAAT--GT--AGG-TCAC-CGCTAT-------------T--ATTTTT-CAT-TTT-CCC-TT-C-GTTTT----------------------CAT-A-CAA--T---GTTCA-TTGGA--AAT-C-CCCTT-C-TTGTA-C----CC-CC-TG-TA-G--A-----CTCCCGT---------AC-CCCCTCCATA-ACACTGAC-ATTG--A--C----------------------GCT---TC-GTTG-CC-CAA-ATTGAAAA-TC-CAA-TG-TAT-AAA-C-c
gi|19 : GTGTC-CA-T-CTTTTTTG--GGATCGAAA---TGT--AGG-TCAC-CG---T-A-AGAA--C-TCG--ATATTT-CTT-TTA-T-T-CTCC-ATTTCAG-CATCG-AA--CAA--AC-ACAT-A-CAA--T---GTTAC-C---GGAAAC-C-CCCTT-
gi|10 : TCTCTCA-T-CTTTTTTG--GGATC-AAAAT--GT--AGG-TCAC-CGCTAT-A-AGAA----TCT--ATATTT-CTT-TTG-T-T-CT-CCATTTTAT-CGCCC-AA--CAA---CA-CAT-A-CGA--T---GTTTA-CCG-G--AAA-C-CCCTC-T-T-GTA-C----CT-CC-TA-TA-G--A-----CTTCCTTA-C-C--TCAC-CCCCTCCATA-ATATTGAC-ATTG--A--CCCTC--AAA--CTGAA---T--GCT---TC-GTTG-CC-CAG-ATTAAAAAATC-CGC-TG-TCT-AAA-C-T-G-CTCAT-A-G-CTTC-CG--TTT-GC-CG--A-T-TGTCT--CGGC---G-G-TACGCCGATA--GTCC--TAACG-GTT--TTAC--ACGCGCTCTC-ATTTGGCT-ATTG----------GTATTCTC---C--AACTC--TT-T-A-G-T-CAC--T-G-AAAA------c
gi|21 : TCTC-CA-T-CTTTTTTG--GAAT-CAAAA--TGT--AGG-TCAT-CGCTAT-A-AG-AA-C-TCC--ACATTT-CTT-T
gi|1 : CTC-CA-T-TCTTTTTG--GGAT-CAAAATGTTT--AGG-TCAC-CGCTAT-ATAGAAT-CTTCTA-ATATTT-CTT-TTGTTCT-CT-C-A-TTTAT-CGCCC--A--CAATCACAAT-T-A-CGATTT---GTTTA-CCG-G--AAA-C-CCCTTCT-TTGTA-C----TC-C--TA-TA-GAAA-----CTTCCTTA-C-CTTTCA--CCCTTCTATA-ATATTGAC-A-TG--A--CC--T-CAAA--ATATA---T--GCTTA-TCAGTTG-CCTCAAGATTAAAAA-TC-CGC-TG-TCT-AAA-C-T-G-TCAAATA-G-CTTTCCG-GTTTGGC-CG--ATT-TGTCTTGCGGCGG-G-G-TA-GCCGATA--GTCCTATAGCG-GTT----AC--ACGCGCTCTC-ATT-GGCT-ATTG--GTATTTTC----TCTC------AACTC--TT-T-A-G-T-CACT-T-G-AAAA------CT-C---AA--A-AAAAG-TTATGC------CAATGAGATGCACT----------GC-TAAC-TTT---TT--TTGGT--TT---T-CAAGT---GA-CTAAA-A---GA-GTTG---GAGGAAGTCACCATAGCC--A--ATG-AG-AGCGCG---TGTAAATAACGCGTTTA---GGACTTAT-G--CGTA-C-CCGGGCCG--AGACA-A-TTGCG-GCA-AA-C-CGG-AA-GCTAT--G---AG-CTA-GTTTT-AGACCA-GC-GTGATTTTTTT-AATTG---GG-CAAC-GAGCAG---C-AA---TTCAGTTTTTGTGAGGG-TCA--AT-GT-CAATAT-T-AT-GA--GG-G-TGAG--G-TA----GGAGT--CTTACT---AG-GA-G--TAC-AA--AATGGGCTGTT-CGGTAAAC--A--TCGT-A--TG-TG-T-TG--TT----G-GCG-ATA-AAAT-G-GAGAA-C--AAAGAA-ATATA-G-A--GTTC--TT-T----ATAGCGTGTGAC-CT--AC-AT-TTTG-ATCC-CAAAA-AAGA-TG-GAGA
gi|13 : CTC-CA-T-CTTTTTTG--GGATC-AAAAT--GT--AGG-TCAC-CACTAT-A-AGAA--T-TCT--ATATTTTCTT-TTA-C-T-C--C-ATTTTAG-CGTTT-AA--CAA--A--------------T---GTTTA-C----------------T-T-CT---------------TA-TG-T--A-----CTCCCTTT-C-C--TCAT-CCG-TCCAAA-TTACTGAC-ATTG--A--TCCTC--AAA--CTGAA---T--GCT---TC-------C-TAA-AT--------C-CAC-TG-TCT-AAA-C-G-A-CTCA-AA-A-CTTC-CC-GTTT-GC-CG--A-T-CGTCG--CGGT---G-T-TACGCc
gi|6 : gttttgagtacaagtcataaatacaccggaacttagccaatgagagcgcTC-CA-T-CTTTTTTTTTGGATCGAA----TGT--AGG-TCAC-CGCTAT-A-AGAA--C-TCG--ATATTT-CTT-TTA-T-T-CT-C-ATTTCAG-CAACT-AA--CAA--ACA-CAT-A-CAT--T---TTTTA-CCG-G--AAC-C-CCCTT-A-CTGTA-C----CT-CC-TA-TA-G--A-----CTCC-TTA-C-C--TCAC-CCC-TCTGTA-C-ACTGAC-ATTG--A--CCCTC--AAA--TTGAA-------TT---TC-ATTG-CC-CAG-ACTAAAA-TTC-CAC-CG-TCTTAAA-C-A-A-CTCA-AA-A-CTTC-CG-GTTT-GC-CG--A-T-TGTCG--CGGT---G-T-TACGCCGATA--GTCT--CAATG-GTT--T-AC--ATTTGCTCTC-ATT-GGCT-ATTG----GTTTTC------TC---A--AACTC--TT-C-A-G-T-CAC--T---AAAA------T--C---CA--A-AAAAG-TTA-GCCAATGTTA-TG------GCTCT--CATTG-GC-TAAC-TAT---TT--TTGG---TT---T-CAG-T---GA-CT--tc
gi|11 : tattgatttttttgcaaaacaaaC-CA-T-CTTTTT-G--GGATC-GAAAT-T----AGG-TCAC-AGCTATTG-CGAAGTC-G----ATATTT-CTTATTA-T-T-CT-CCATTTCAGGCATGC-AAA-CAA--ACA-CAT-A-CAA--T---GT--A-CCG-A--AAC-C-CCCTT-C-TTGTAAC----CT-CC-TA-TA-G--A-----CTCCCTTA-C-C--TCA---CCCTCTATA-ACACTGAC-ATTG--A--CCCT--CAAA--TTACA---T--GCT---TC-ATTG-CC-CAAGACTAAA---TC-CAC-TG-GCT-AAA-C-A-A-CTCA-AA-A-CTTC-CG-GTTT-GC-CA--G----------------------ACGTCG--------------CG-GGT--C-AC--GCGCACTCTC-ATTGGGCTAACTTT-TTTTTTTGGT---------------TT--TT-C-A-G-T-GAC--T-A-AAGA------a
gi|20 : gggctatgcgttatctcaaac-CA-T-CTTTTTTG--GGATCGAAA---TGT--AGG-TCAC-C---GT-A-AG-AA-C-TCG--ATATTT-CTT-TTA-T-T-CT-C-CATTCA--CATCG-AA--CAA--AC-ACAT-A-CAA--T---GTTAC-C---GGAAAC-C-CCCTt
gi|7 : tCT-AA--CAA--ACA-CAT-A-CAA--T---GTCTA-CCG-G--AAC-C-CCCCT-TCTTGTA-C----CT-CC-TA-TA-G--A-----CTCCCTTA-C-C--TCAC-CCCCTTTATA-ACACTGAC-ATTG--A--CCCT--CAAA--CTGAA---T--GCT---TC-ATTG-
gi|16 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaactctttagtca--TA-TA-G--G-----TTCCCTTA-C-C--TCACACCCCAC-----CCACCCAT-A-----A--CCTTG-CA----TTGAC-------CT---TC-ATTG-CC-TAA-ATCAAAAG--C-CAC-CG-TCT-AAA-C-G-A-CTCA-AA-A-CTTC-CG-TTTT-AG-CG--A-T-
gi|4 : ccg-G--A-----CTCCCCTC-C-C--TCATACCCCTCTGTAACGATTGACTATTG--A--CCCTC--AAA--CTGAA---T--G-T---TC-GTTG-CC-CAG-ATTAAAA-TTC-CA--TG-TCT-AAA-TGT-G-CTCAT-A-A-CTTC-CG-GTTT-GC-CG--A-T-TGTCT--CGGC---G-G-TACGCCGATA--GTCC--TAACG-TTT--TA-C--ACGCGCTCTT-ATT-GGCT-ATTG----------GTATTATC---A--A-CTC--TT-C-A-G-T-CAC--T-A-AAAA------CACC---AA--A-AAAAG-TTA-GCCAATGAGATTG---CGCG-TAA--CA---CGC-TAAC-TTT---TT--TTGG---TT---TTCAG-T---GA-CT--G-A---AAAGTCT---GATA-TACCA--ATAGCC--A--ATG-AG-AGCGCGT---GTAA--AAC-CGTTAGA-----C-TATCGG-CGTA-C-C----TCG--AGACA-A-T--CG-GCA-AA-C-CGG-AA-G-TAT--G---AG-C-A-C-TTT-AGA-CA-GT-G-GA--TTTTT-AATCTGG-GG-CAAC-GA--AG---C-AT---T-CAG---TTT-GAGGG-TCAT-T--GT-CAATGT-T-ACAGAGGGG-G-TGAG--G-TAA-G-GGAG---TCT--T---AG-GA-G-GTAA-AA-GAAGGGG---TCTCGCTAAAC--G--TTGT-A--TG-TGTT-TG--TT-GG-G-GCG-A-A-AAAT-G-GAGAA-CAAAAGAAA-T-ATA-G-A--GTT----T-T-----CAGCG-GTGAC-CT--AC-AT-TTTG-AT-C-CAAAA-AAGA-TG-GAGAcacgttatgttacacacactctcattggctattagta
gi|5 : tCCCTTAAC-C--TCAC-CCCCTCTATA-ACACTGAC-ATTG--A--CCCT--CAAA--CTGAA---T--GCTG--TC-A-TG-CC-CAG-ACTAAAA--TC-CAC-TG-TAT-AAA-C-G-A-CTCA--A-A-CTTT-TG-GTTT-GC-CG--A-T---------------------CACCG-----------CGACG-GTG--TTAC--ACGCGCTCTC-ATT-GGCT-ATTG----------GTGGTCTC---A--AACTT--TT-T-A-G-T-CA
gi|18 : AAAAATCC-CACATG-TCT-AAA-C-A-A-CTCA--A-A-ACTC-CG-GTTT-GC-CG--A-T-T-TCG--TGGT---GTG-TACGCtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggctatttagtcagtgaaaaccaaaaaaggttagccaatgagagcgcaggtagcaccgcgacgatcggcaaactggaagttttagtcgtttagacagtggagttttagtctgggcaatgaagcattcagtttgagggtcaatgtcagtgttatagagggggtgaggtaagggagtttataggaggtgcaagaagggggtttccggtgaacattgtcatatgttaatggagaataaaagaaatatcaagttcttatagcggtgacctacatttcgatcccccaaaagacggacac
gi|8 : tagttctcaaactctttagatatgaaaacaaaaaaagtttagcaatgagagtgcgcTT-CAC-TG-TAT-AAA-C-A-A-TCCA--A-ATCTTC-CG-GTTT-GC-CG--A-T-CGTCC--Ctc
gi|25 : agT-CG-GTTT-GC-CG--A-T-TGTCT--CGGC---G-G-TCCGCCGacgcactctcattggctattggtattctcaaactctttagtcactgaaaaccgaataaaaagatagccaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|17 : C--TAACG-TTT--TA-C--ACGCCCTCTCCATT-GG-T-ATTG----------GTATT--C---C--AACTCATTT-A-A-G-T-CACA-T-G-AAAA------C--C---AA--AAAAAAG-TTA-
gi|8 : gcggcttgttgtcataaactgttgcaagtatactgaaaacgcaaaaaatgttagcgtgctctcattggctaC--ACGCACTCTC-ATT-GGCT-ATTG----------GTATTCTC---A--AACTC--TT-T-A-G-T-CAC--T-G-AAAA------C--C---GAATA-AAAAG-ATA-GC--
gi|7 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtccCTC-ATT-GGCT-ATTG----------GTATTCTC---A--AACTC--TT-T-A-G-T-CACAAT-G-AAcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|6 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctT-ATTGA-TTTTTTT-GCAAAA-C---A--AA----------A-G-T-CAC--T-G-AAA-------C--C---AA--A-AATAG-TTA-GC------CAATG---AGAGCCATAACATTG-GC-TAAC-TTT---TT--TGGA---TT---T-TAG-T---GA-CT--G-AA--GA-GTTT---GAGAAAACCA--ATAGCC--A--ATG-AG-AGCA---AATGT-A--AAC-CATTGA----GAC-TATCGG-CGTA-A-C---ACCG--CGACA-A-T--CG-GCA-AA-C-CGG-AA-GTTTT--G---AG-T-T-G-TTTAAGA-CG-GT-G-GA--ATTTT-AGTCTG--GG-CAAT-GA--AA----------TTCAA---TTT-GAGGG-TCA--AT-GT-CAGT-G-T-ACAGA-GGG-G-TGAG--G-TAAGG-AG-----TCTA-T---AG-GA-G-GTAC-AG-TAAGGGGG--TTCCGGTAAAA--A--ATGT-A--TG-TGTT-TG--TT-AGTT-GC---TG-AAAT---GAGAA-TAAAAGAAA-T-ATC-G-A--GTT---CT-T----ATAGCG-GTGAC-CT--ACA---TTCG-ATCCAAAAAAAAAGA-TG-GAgcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|9 : TTGTATCATC---A--AACG---TT-C-A-A----------G-AAAAATATAAT--T---AA--A-AAAAG-TTA-GC--GT-----------GC-CTCT--CATTGC---TAAA-CTT---TT--TTGG---TT-----CG--T---GA-CTT-A-A---AA-GTTCTGGGA-AATACCA--AATACC--A--ATG-AG--GCGCGT----TTA--A-C-CGTTAG------C-TATCGC--GTA-C-C---GCCG--AGACA-A-C--GG-GC--AA-A-CTG-AA--CTAT--G---AACC-A-G--TT-ATA-CA-GC-G-GA----TTT-AAACT---GG-CAAC--A--AG---C-AT---TCCAG---TT--GAGAGTTCA--A--TTGCAATAT-T-ATGGA-GTA-G-TAAAA----------------TCTA-T----A-GA----TACAAA-GAAGTG----TTCC-GT--AC--A--TCGT-A--TG-T--T-TG--TT------GCG-AT--AAATGG---AAA-C-AAAAGAA-A-ATA-A-T--CTTGTATC-T----AC-----------CT--AC-AT-TTT-TATCC-CAAAA-AAGA-TC-GAGAa
gi|17 : tTGTTGTC---ATAAACTG--TTGC-AAG-TATAC--T-G-AAAA------CG-C---AA--A-AAATG-TTA-GC--GT-------------GCTCT--CATTGGCTATAACTTTT---TT--TTGGT--TT---T-CATGT---GA-CT--T-AAATGA-GTTG---G--AATACCA--AT-ACC--A--ATGGAG-AGGGCGTG----TA--AAA-CGTTAGgcgctgtgcagtaatgtgtaga
gi|18 : gcggctTTCTC---A--AACTC--TT-T-A-G-A-TA---T-G-AAAA---------C---AA--A-AAAAGTTTA-GC--
gi|11 : tagTC---A--AACTC--TT-T-A-G-T-CAC--T-GAAAAA------C--CAAAAA--A-AAAAG-TTA-GC--aatgagagtgcgcgcgtacacaccacgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|5 : gggctatgcgttatcCTA--TT-T-A-G-T-CAG--T-G-AAAA------C--C---AA--A-AAAGG-TTA-GC--ccaatgagagtgcgcgtgacccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|8 : cccttaacctcaccccctctataacactgacattgaccctcaaactgaatgctgtcatgcccagactaaaatccactgtataaacgactcaaacttttggtttgccgatcaccgcgacggtgttacacgcgctctcattggctattggtggtctcaaactttttagtcatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngg--GTGTTAC-G---CACACTCT--CATTG-GC-TATC-TTT---TTATTCGG---TT---TTCAG-T---GA-CT--A-AA--GA-GTTT---GAGAATACCA--ATAGCC--A--ATG-AG-AGTGCGTcaatgagagcgcaggtagcaccgcgacgatcggcaaactggaagttttagtcgtttagacagtggagttttagtctgggcaatgaagcattcagtttgagggtcaatgtcagtgttatagagggggtgaggtaagggagtttataggaggtgcaagaagggggtttccggtgaacattgtcatatgttaatggagaataaaagaaatatcaagttcttatagcggtgacctacatttcgatcccccaaaagacggacac
gi|5 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccCTG---CGC--TCT--CATTG-GC-TAAC-CTT---TT--TTGGT--TT---T-CAC-T---GA-CT--A-A---tgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|11 : cccttaacctcaccccctctataacactgacattgaccctcaaactgaatgctgtcatgcccagactaaaatccactgtataaacgactcaaacttttggtttgccgatcaccgcgacggtgttacacgcgctctcattggctattggtggtctcaaactttttagtcatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggctatG---CGCACTCT--CATTGGGC-TAAC-TTTTTTTT--TTGGTT-TT---T-CAG-T---GA-CTA-A-A---GA-GTTTGA-GATAACGCgtagcaccgcgacgatcggcaaactggaagttttagtcgtttagacagtggagttttagtctgggcaatgaagcattcagtttgagggtcaatgtcagtgttatagagggggtgaggtaagggagtttataggaggtgcaagaagggggtttccggtgaacattgtcatatgttaatggagaataaaagaaatatcaagttcttatagcggtgacctacatttcgatcccccaaaagacggacac
gi|18 : gggctatG---CGCACTCT--CATTGC-T-AAAC-TTT---TT--TTGT---TT---T-CA--T---AT-CTA-A-A---GA-GTTT---GAGAAgtgacccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|3 : tagT--CATTG-GC-TA-C-TTT---TT--TTGG---TT---TTCAG-T---GAACT--A-AA--GA-GTTG---GAGAATACCA--ATA-GCCCA--ATG-AG-AGCGCGT---GTAA--AAC-CGTTAG----GAC-TATCGA-CGTAGC-C---GCCG--AGACA-A-T--CG-CA--AA-CGCGG-AA-GCTAT--G---A----A-G-TTA-AGA-CA-GC-G-GA--TTTTTTAATCT---GGGCAAC-GA--AG---C-AT---TC-AG---TTT-GAGGGT-CA--AT-GT-CAATAT-T-ATGGA-GGG-GGTGAG--G-TAAGG-A-AGT---CTA-T---AG-GA-G-GTAC-AA-GAAGGGG-TGTTCCGGTAAAC--A--TCGTAA--TG-TGTT-TG--TT--G-G-GCG-ATA-AAAT-G-GAGAA-CAAAAGAAA-T-ATA-G-A--GTT---CT-T----AT-GCG-GTGAC-CT--AC-AT-TTTG-ATGC-CAAAA-AAGA-TG-GAGAgcgtacacaccacgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|7 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcggcggtacgtctG---CT---T-CA--TTGTGA-CT--A-AA--GA-GTTT---GAGAATACCA--ATAGCC--A--ATG-AG-AGC-CGT
gi|10 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcg---TT---T-CAG-T---GA-CT--A-AA--GA-GTTG---GAGAATACCA--ATA-GCCAA--ATG-AG-AGCGCGT---GTAA--AAC-CGTTAG----GAC-TATCGG-CGTA-C-C---GCCG--AGACA-A-T--CG-GC--AA-A-CGG-AA-GCTAT--G---AG-C-A-G-TTT-AGA-CA-GC-G-GAT-TTTTT-AATCTG--GG-CAAC-GA--AG---C-AT---T-CAG---TTT-GAGGG-TCA--AT-GT-CAATAT-T-ATGGAGGGG-G-TGAG--G-TAA-G-GAAG---TCTA-T---AG-GA-G-GTAC-AA-GAGGGG---TTTCCGGTAAAC--A--TCGT-A--TG-TG-T-TG--TT--G-G-GCG-ATA-AAAT-G-GAGAA-CAAAAGAAA-T-ATA-G----ATT---CT-T----ATAGCG-GTGAC-CT--AC-AT-TTTG-ATCC-CAAAA-AAGA-TGAGAGattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|5 : tA--T---GA-CT--A-A---AAAGTTT---GAGACCACCA--ATAGCC--A--ATG-AG-AGCGCGT---GT----AAC-------------------------A-C-C---GTCG--CGGTG-A-T--CG-GC--AAAC-CAA-AA-GTT-T--G---AG-T-C-G-TTT-ATA-CA-GT-G-GA--TTTT--AGTCT---GG-GCAT-GAC-AG---C-AT---TC-AG---TTT-GAGGGT-CA--AT-GT-CAGTGT-T-ATAGA-GGGGG-TGAGG-T-TAAGG-Ga
gi|13 : CGCGCGTA-A-C---ACCG--CGACG-A-T--CG-GC--AA-A-CGGGAA-GTTTT--G---AG-T-C-G-TTT-AGA-CA-GT-G-GA--TTT----------------AG-GA--AG---C-AT---TC-AG---TTT-GAGGAT-CA--AT-GT-CAGTAA-T-TTGGA-CGG-A-TGAGG----AAAG-GGAGT--AC-----------------AT-AA-GAAG------------TAAAC--AT-TTGT-----------------T-AA-A--CG-CTA-AAATGG----AG-TAAAAGAAA-ATATA-G-A--ATT---CT-T----ATAGTG-GTGAC-CT--AC-AT-TTTG-ATCC-CAAAA-AAGA-TG-GAGagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggctatttagtcagtgaaaaccaaaaaaggttagccaatgagagcgcaggtagcaccgcgacgatcggcaaactggaagttttagtcgtttagacagtggagttttagtctgggcaatgaagcattcagtttgagggtcaatgtcagtgttatagagggggtgaggtaagggagtttataggaggtgcaagaagggggtttccggtgaacattgtcatatgttaatggagaataaaagaaatatcaagttcttatagcggtgacctacatttcgatcccccaaaagacggacac
gi|18 : gttttgagtacaagtcataaatacaccggaacttagccaatgagagCGCGCGTA-CAC---ACCA--CGA-A-A-T--CG-GCA-AA-C-CGG--A-GTTTT--G---AG-T-T-G-TTT-AGA-CATGTGG-GA--TTTTT-tc
gi|25 : tagttctcaaactctttagatatgaaaacaaaaaaagtttagcaatgagagtgCGG-CGGA-C-C---GCCG--AGACA-A-T--CG-GCA-AA-C-CGtc
gi|3 : t-CGTA-C-C---GCCG--AGACA-A-T--CGAGC--AG-C-C------TTTA---G---A--C-A-G-TTT-AGA-CA-GCGG-GA--TTTTT-AATCTG--GG-CAAC-GA--AG---C-AT---T-CAGT--TTT-GAGGGGTCA--ATTGT-CAATAATT-ATGGA-GGG-G-TGAG--G-TAAAGCAGACTCATCTA-TAGAAA-GA-C-GTAC-AA-GAAGGGG--TTTCC-GTAAACCGAG-TCGT-A--TG-TG-TATGAATT--G-G-GC--ATA-AAATGGAGCAAA-CAAAA--GA-A-TTA-G----ATTC--TT-T----ATAGCG-GTGATCCTGAACAAT-CTTGAATCC-CAAAA-AAGATTG-GAGA
gi|8 : -CGTA-A-C---ACTG--CGACA-A-G--CG-GC--AAAC-CGG-AA-GTTTT--G---AG-T-T-G-TTT-AGA-CA-GT-G-GA--TTTTT-AGTCTG--GG-CAAT-AA--AG-----TA---TTCAA---TTT-GAGGG-TCA--A--TG-CAATGT-T-ATAGAGGGG-G-TGAG--G-T-AGG-GGAG---TCTA-T---AG-GG-G-GTAC-AC-GATGGGGG--TTCCGATAAAC--A--TCGT-A--TG-TGTT-TG--TT-AG-ATGC---TG-AAAT-G-GAGAA-TAAAAGAAA-T-ATC-G-A--GTT---CA-A----ACAGCG-GTGAC-CT--ACAA--ATCG-ATCC-CCAAA-AAGA-TG-GAtcttcattggctactttttttggttttcagtgaactaaagagttggagaataccaatagcccaatgagagcgcgtgtaaaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|14 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaactctttagtcactgaaaaccgaataaaaagatagccaatgagagtgtg-CGTA-C-C---GCCG--AGACAGA-T--CG-GT--AAAC-CCT-AA--CTAT--GGTGAG-C-A-G-TTT-TAA-C--GC-G-GA--TTTT---ATCTAG-GG-CAAC-GA--AGGAGC-AT---TC-AT---TT---AGGGT-CA--A---T-CAATAA-TTATAGA-GGG-G-TGAGT-G-TAATG-GAA----TCTA-T---AAGGA-G-GGAC-AA-GAAGGG----TTCCGG-AAAC--AT-CGAT-A--TGCTG-T-TG--TT-GC-G-GC---T--AAAT-G-GAG-A-CAAGAAT------TATG-A--GTT---CT-T----ATTGCG-GT-AC-CT--AC-ATGTTTG-ATCC---AAACAAGA-TG-AAGAcacc
gi|5 : agGTA-G-C---ACCG--CGACG-A-T--CG-GC--AAAC-TGG-AA-GTT-T--T---AG-T-C-G-TTT-AGA-CA-GT-G-GA--GTTTT-AGTCTG--GG-CAAT-GA--AG---C-AT---T-CAG---TTT-GAGGG-TCA--AT-GT-CAGTGT-T-ATAGAGGGG-G-TGAG--G-TAA-G-GGAGT--T-TA-T---AG-GA-G-GTGC-AA-GAAGGGGG-TTTCCGGTGAAC--A--TTGTCA--TA-TG-T-T--------------------AAT-G-GAGAA-TAAAA--GA-A-ATA-T-CAAGTT---CT-T----ATAGCG-GTGAC-CT--AC-AT-TTCG-ATCC-CCCAA-AAGA-CG-GAc
gi|12 : cccttaacctcaccccctctataacactgacattgaccctcaaactgaatgctgtcatgcccagactaaaatccactgtataaacgactcaaacttttggtttgccgatcaccgcgacggtgttacacgcgctctcattggctattggtggtctcaaactttttagtcatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggctatttagtcagtgaaaaccaaaaaaggttagccaatgagagcgcagA-C-C---GTTG--GGACG-A-T--CG-GC--AAAC-CGG-AA-GTTTT--G----G-T-T-G-TTT-AGA-CAAGT-G-GA--TTTTT-TGTCT---GGGTAAT-GA--AG---C-TT-----CAA---TTG--AGG--TCA--AT-GT-CAGTGT-T-ACAGA-AGGAG-TGAG--G-TAAGG-G-AGT---CTA-T---AG-GA-GGTTAC-AA-GAAAGGGTGGTTCCGGTAAAC--AA-TTGT-A--TG-TGTT-TG--TT-AG-A-ATG-CTG-AAAT-G-GAGAATCAAAA--AA-A-TTC-G-A--GT----CT-TA---ATAGCG-GTGAC-CT--AC-AT-TTCG-ATCC-CCAAAAAGAA-TG-GAcac
gi|7 : gtg-C-C---GTCG--AGACG-A-T--CG-GC--AAAC-CGG-AA-GTTAT--G---AG-T-T-G-TTT-AGA-CA-GT-G-TA--TTTTT-AGTCTG--GG-CAAT-GA--AG---CATTAAATTCAA---TTT-GGGGG-TCA--AT-AT-CAGTGT-T-ATAAAGGGG-G-TGAG--G-TAA-G-GGAG---TCTA-T---AG-GA-G-GTGC-AA-GAAGGGGG-TTTCCGGTAGAC--AT-T-------------T-TG--TT-AG-ATGC---TG-AAAT-G-GAGAA-TAAAAGAAA-T-ATC-G-A--GTT---CT-T----ATAGCG-GTGAC-CT--AC-AT-TTCG-ATCC-CAAAA-AAGA-TG-GAtttacaaacgcgctctcattggctattgtattc
gi|11 : gtgCCG--CGACG-T-C--TG-GC--AAAC-CGG-AA-GTTTT--G---AG-T-T-G-TTT-AGC-CA-GT-G-GA----TTT-AGTCTTG-GG-CAAT-GA--AG---CATG---T--AA---TTT-GAGGG-TCA--AT-GT-CAGTGT-T-ATAGA--GG-G-TGAG--G-TAA-G-GGAG---TCTA-T---AG-GAGG-TTAC-AA-GAAGGGGGTTT--CGGT--AC--A--TTGT-A--TG-TGTT-TG--TT-TG-C-ATGCCTG-AAAT-G-GAGAA-TAATAAG-A-A-ATA-T-C--G--A--CT-TCGCAATAGCT-GTGAC-CT--A--AT-TTCG-ATCC-CAAA--AAGA-TG-Gctctcattggctattggtattctcaaactctttagtcacaatgaagcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gggctatgcgttatctcaaactctttagtcactgaaaaaccaaaaaaaaaagttagcccaatgagagtgcgcgtgacG--GGACG-A-T--CG-GC--AAAC-CGG-AA-GATTT--G---GA-T-T-G-TTT-ATA-CA-GT-G-AA--CTt
gi|16 : --AA-A-CGG-AA-GTTTT--G---AG-T-C-G-TTT-AGA-CG-GT-G-G---CTTTT-GATTTA--GG-CAAT-GA--AG---G-T------CAA----TG-CAAGGTT------------ATGG-G-TGGGT-GGG-G-TGTGAGG-TAAGG-GAA----CCTA-T---Aacgcactctcattggctattggtattctcaaactctttagtcactgaaaaccgaataaaaagatagccaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|15 : ccg-G-TTT-ATA-CA-TT-G-GA--TTTTC-AATTT---GGGCAAC-GA--AG---C----------------------GT-CA--AT-GT-CAGTGT-T-ATGGA-GGG-G-------G-TACGG-G-AGT---CTA-C---AG-GG-G-GTAC-AA-GAAGGGGA-TTTCCAATGAAC--A--TTGT-A--TG------------------------A-AAACGA-AGGGA--AAATGAAA-A-ATA--------------------ATAGCG-GTGAC-CT--AC-AT-TTTG-ATCC-CCCAA-AAGA-T--GAGGtagcgatcacgttatgttacacacactctcattggctattagta
gi|7 : -CAAT-GA--AG---C-AT---TC-AG---TTT-GAGGGT-CA--AT-GT-CAGTGT-T-ATAAA-GGG-GGTGAG--G-TAAGG-G-AGT---CTA-T---AG-GA-G-GTAC-AA-GAAGGGGG-GTTCCGGTAGAC--A--TTGT-A--TG-TGTT-TG--TT-AG-ac
gi|19 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaactctttagtca-GAAGGGGGTTT-CCGGT-AAC--A--TTGT-A--TG-TGTT-TG--TTCGA-T-GC---TG-AAAT-G-GAGAA-TAAAAGAAA-T-ATC-G-A--GTT---CT-T----A---CG-GTGAC-CT--AC-AT-TTCG-ATCC-CAAAA-AAGA-TG-GA
gi|20 : gtgAGGGGGTTT-CCGGT-AAC--A--TTGT-A--TG-TGTT-TG--TT-------CG-ATGTGAAT-G-GAGAA-TAAAAGAAA-T-ATC-G-A--GTT---CT-T----A---CG-GTGAC-CT--AC-AT-TTCG-ATCC-CAAAA-AAGA-TG-
gi|21 : tAAAGAA-ATGTG-G-A--GTT---CT-T----ATAGCG-ATGAC-CT--AC-AT-TTTG-ATTC-CAAAA-AAGA-TG-GAG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 2 11111111111111 222 666666666666666666666666666666666666666 1111 3333333333333333 33333333333333333333 111 111111 11 2222222 3333333333333333333333 11 111 111 1111 11 11 111 1 3333333333 111 111
lowQualScore : 2 2 2 33 2 2 0 33 2 2 33 2 2 3 2 2 4444 00000000000000 33 5 5 2 2 0 777 7777 33 2 5 444 2 2 2 66666 2 2 2 55555 4 2 2 333 333 88888 999 4 2 4 55 2 2 22 4 2 2 33 33 88 33 2 2 33 2 1 666666666666666666666666666666666666666 33 2 8 0000 1111111111111111 0 1 999 3 3 88888 44 3 555 5 00000000000000000000 999 4 55 4 55 111 55 777 444444 55 4 44 9999 4 5 1111111 4 5 5 9999999999999999999999 3 00 0 77 5 99999 111 5 5 5 77 1 1 66 7777 0 444 9999 0 88 5 66 0 88 2 8 99 11 888 8 2 444 8 6 1 99 6 0 6 99 7 3 0000000000 6 6 7 6 3 222 6 6 111 6 99 6 6 6
lowQualScore : . . . .. . . . .. . . .. . . . . . .... .............. .. . . . . . ... .... .. . . ... . . . ..... . . . ..... . . . ... ... ..... ... . . . .. . . .. . . . .. .. .. .. . . .. . . ....................................... .. . . .... ................ . . ... . . ..... .. . ... . .................... ... . .. . .. ... .. ... ...... .. . .. .... . . ....... . . . ...................... . .. . .. . ..... ... . . . .. . . .. .... . ... .... . .. . .. . .. . . .. .. ... . . ... . . . .. . . . .. . . .......... . . . . . ... . . ... . .. . . .
lowQualScore : 7 7 7 77 7 7 4 77 7 7 00 7 7 3 7 7 1111 11111111111111 77 7 3 7 7 8 333 7777 77 7 3 777 5 5 5 22222 4 4 4 99999 7 4 4 555 888 22222 777 7 4 4 33 4 4 77 7 4 4 22 11 99 44 4 4 22 4 2 000000000000000000000000000000000000000 99 9 6 0000 6666666666666666 9 0 333 3 3 33333 66 3 888 0 55555555555555555555 111 0 55 0 55 000 55 000 777777 00 4 77 4444 4 0 2222222 5 7 7 7777777777777777777777 2 44 7 99 7 33333 444 7 7 0 99 0 7 77 7777 3 222 0000 8 22 6 44 8 88 8 0 00 00 666 2 5 555 0 7 3 22 7 7 7 22 5 2 3333333333 7 7 5 7 0 333 7 7 333 7 22 7 7 7
consensus : GTCTC-CA-T-CTTTTTTG--GGAT-C-GAAATTGT--AGG-TCAC-CGCTAT-AA-GAA-CTCTATA-TTTCTT-TTGT-T--CTCCATTT--CAGCGC---CC-AA--CAAACA-CAT-A-CGAT---GTTTACCGGAA-C--C--CC-CTTCTTGTA-CCTC---CT-A-TA-GA-----CTCCCTTA-C-CTCAC-CCCC-----TCTATAAC-ACTGACA-TTGACCC-TC-CAAA--CTGAAT-----GCT---TCGTTGCCC-A-GACT-AAAAA--T-C-C-GC-TG-TC-TAAA--CNACTCAN-AAC--TTCCG-GTTTGC-CG--AT-CGTCTCGGC---G-G-TACGCCGATA-GTCCCAA-CG-GTT--TTAC--GCGCGCTCTCA-TT-GGCTA----TTGT--T----T------GTATTCTCAAACTCTTC--AG-T-CA-----C--T-GAA---AAC-CAAAAAAAGTTAGC----G---TNACGCGCGC--TCTCATTG-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGACT-AAA-GAGTT-TGAGA----A-TACCA-A-------TAGCCAAT-G-AGAGCGCG---TGT-AAACCGT--TA----GGACTATCGGCGTA--C-CGCCG--AGAC-AATCGG-CAAACCGG-AAGT--TNTGAGC-CGTTTAGACA-GC-GGATTTTTAATCT--GGGCAAC-G--AAGCATTCCAGTTTGAGGGTTCAAT-GTCAAT-ATTATAGAGGGG--TG--AG-GTAAGGGGAGTTCTATAGGAGGTACAA-GAAGGGGG-TTTCCGGTAAAC--A-TCGT-A--TGTGTTTGTT-GGGCGATG-AAAT-G-GAGAACAAAAGAAATA-TCGA--GTT-CT-TATAGCGGTGAC-CT--AC-ATTTCG-ATCCCAAAA-AAGATGGAGAC
Reference ( family-6925 ) : GTCTC-CA-T-CTTTTTTG--GGAT-C-AAAATTGT--AGG-TCAC-CGCTAT-AA-GAA-CTCTATA-TTTCTT-TTGT-T--CTCCATTT--CAGCGC---CC-AA--CAAACA-CAT-A-CGAT---GTTTACCGGAA-C--C--CC-CTTCTTGTA-CCTC---CT-A-TA-GA-----CTCCCTTA-C-CTCAC-CCCC-----TCTATAAC-ACTGACA-TTGACCC-TC-CAAA--CTGAAT-----GCT---TCGTTGCCC-A-GATT-AAAAA--T-C-C-GC-TG-TC-TAAA--CNGCTCAT-AAC--TTCCG-GTTTGC-CG--AT-TGTCTCGGC---G-G-TACGCCGATA-GTCCTAA-CG-GTT--TTAC--ACGCGCTCTCA-TT-GGCTA----TTGT--T----T------GTATTCTCAAACTCTTT--AG-T-CA-----C--T-GAA---AAC-CAAAAAAAGTTAGC----G---TGATGCGCGC--TCTCATTG-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGACT-AAA-GAGTT-TGAGA----A-TACCA-A-------TAGCCAAT-G-AGAGCGCG---TGTNAAACCGT--TA----GGACTATCGGCGTA--C-CGCCG--AGAC-GATCGG-CAAACCGG-AAGT--TNTGAGC-NGTTTAGACA-GC-GGATTTTTAATCT--GGGCAAC-G--AAGCATTCCAGTTTGAGGGTTCAAT-GTCAGT-GTTATAGAGGGG--TG--AG-GTAAGGGGAGTTCTATAGGAGGTACAA-GAAGGGGG-TTTCCGGTAAAC--A-TCGT-A--TGTGTTTGTT-GGGCGATG-AAAT-G-GAGAACAAAAGAAANA-TAGA--GTT-CT-TATAGCGGTGAC-CT--AC-ATTTCG-ATCCCAAAA-AAGATGGAGAC
gi|1 : GTCTC-CA-T-CTTTTTTG--GGAT-C-AAAAT-GT--AGG-TCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-T--CTCCATTT--TATCGC---C--AA--CAA-CA-CAT-A-CGAT---GTTTACCG-AA-CAGC--CC-ATT-TTGTA-C-TC---CT-AGTAAGA-----CTCC--TA-C-CTCAC-CCTC--------ATAAT-ATTGACA-TTGACCC-TCACAAAAACTGAATT----GCTGC-TCGTTGCCC-A--ATT-AAAAAAAT-CAC-GC-TGGTC-TAAAACTAGCTCAT-AGC--TTCCG-GTTTGC-CGCAAT-TGTCTCGGCCCGG-G-TACGC--ATAAGTCCTAAACGCGTTATTTAC--ACGCGCTCTCA-TT-GGCTA----TGGTGAC----T---------TCCTCCAACTCTTTT-AG-T-CA-----C--TTGAA---AAC-CAAAAAAAGTTAGC----A-------GTGCA---TCTCATTG-G-CATA--A-CTTTTT--TT---GAGTT---TT--CAAGTGACT-AAA-GAGTT--GAGAGAAAA-TACCA-A-------TAGCCAAT-G-AGAGCGCG---TGT--AACCGCTATA----GGACTATCGGC-TACCC-CGCCGCAAGACAAATCGGCCAAACCGGAAAGCTATTTGA-C-AGTTTAGACA-GC-GGATTTTTAATCTTGAGGCAACTGATAAGCA-TATATTTTGAGG--TC-AT-GTCAAT-ATTATAGAAGGG--TGAAAG-GTAAGGAAGTTTCTATAGGA-GTACAA-AGAAGGGG-TTTCCGGTAAACAAA-TCGT-AATTGTGATTG-T-GGGCGAT--AAAT-GAGAGAACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGAC-CTAAAC-ATTTTG-ATCCCAAAA-AGAATGGAG
gi|10 : TCTCTCA-T-CTTTTTTG--GGAT-C-AAAAT-GT--AGG-TCAC-CGCTAT-AA-GAA--TCTATA-TTTCTT-TTGT-T--CTCCATTT--TATCGC---CC-AA--CAA-CA-CAT-A-CGAT---GTTTACCGGAA-A--C--CC-CT-CTTGTA-CCTC---CT-A-TA-GA-----CTTCCTTA-C-CTCAC-CCCC-----TCCATAAT-ATTGACA-TTGACCC-TC--AAA--CTGAAT-----GCT---TCGTTGCCC-A-GATTAAAAAA--T-C-C-GC-TG-TC-TAAA--CTGCTCAT-AGC--TTCC--GTTTGC-CG--AT-TGTCTCGGC---G-G-TACGCCGATA-GTCCTAA-CG-GTT--TTAC--ACGCGCTCTCATTT-GGCTA----TTG---------------GTATTCTCCAACTCTTT--AG-T-CA-----C--T-GAA---AAc
gi|11 : ----G---TCACGCGCAC--TCTCATTG-GGC-TA--A-CTTTTT--TTTTTGG--T---TTTTCA-GTGACT-AAA-GAGTT-TGAG-----A-TAACGCA-------TAGCC
gi|11 : gC-CA-T-CTTTTT-G--GGAT-C-GAAATT----AGG-TCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-T--CTCCATTT--CAG-GCATGCA-AA--CAAACA-CAT-A-CAAT---GT--ACCGAAA-C--C--CC-CTTCTTGTAACCTC---CT-A-TA-GA-----CTCCCTTA-C-CTCAC-CC-------TCTATAAC-ACTGACA-TTGACCC-TC--AAA--TTACAT-----GCT---TCATTGCCC-AAGACT-AAA----T-C-C-AC-TG-GC-TAAA--CAACTCAA-AAC--TTCCG-GTTTGC-CA--GA-CGTC---GC---G-G------------GTC---------------AC--GCGCACTCTCA-TTGGGCTAAC--TTTT--T----T---------TTTT--GGTTTTTC--AG-T-GA-----C--T-AAA---GAccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTC-CA-TTCTTTTTGG--GGAT-C-GAAAT-GT--AGG-TCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-T--CTCCATTT--CAGCAT---TCTAA--CAAACA-CAT-A-CAATT--GTTTACCGGAA-C--CACCC-TTTCTTGTAACCTC---CT-A-TA-GA-----CTCCCTTA-C-CTCAC-TCCT-----TCTGTAAC-ACTGACA-TTGA-CC-TC---AA--TTGAA------GCT---TCATTACCC-A-GACA-AAAAA--T-C-C-ACTTG-TC-TAAA--CAAC-CAA-AAC--TTCCG-GTTTGC-CG--AT-C--------------------------GTCCCAA-CG-GTT--TTACAAACGCGCTCTCA-TT-GGCTA----TTGT--t
gi|13 : CTC-CA-T-CTTTTTTG--GGAT-C-AAAAT-GT--AGG-TCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA-----CTCCATTT--TAGCGT---TT-AA--CAA------------AT---GTTTA----------------CTTCT-------------T-A-TG-TA-----CTCCCTTT-C-CTCA--TCCG-----TCCAAATT-ACTGACA-TTGATCC-T--CAAA--CTGAAT-----GCT---TCCT---------------AAA--T-C-C-AC-TG-TC-TAAA--CGACTCAA-AAC--TTCCC-GTTTGC-CG--AT-CGTC---GC---G-G-TG-------------------------TTAC--GCGCGCTCTCA-TT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGTCTT-CA-T-CTTGTTTG--G-AT-C-AAACATGT--AGG-T-AC-CGCAAT-AA-GAA-CTC-ATA-ATTCTT---GT----CTCCATTT---AGC-C---GC-AA--CAA-CAGCAT-ATCGAT---GTTT-CCGGAA-C--C--C---TTCTTGTC-CCTC---CTTA-TA-GA-----TTCCATTA-CACTCAC-CCC------TCTATAATTATTGA---TTGACCC-T---AAA---TGAAT-----GCTCCTTCGTTGCCCTA-GAT---AAAA--T-C-C-GC--G-TT-AAAA--CTGCTCAC-CATAGTTAGG-GTTTAC-CG--ATCTGTCTCGGC---G-G-TACGCtc
gi|15 : aGTCCT-CA-T-CTTTTGGG--GGAT-C-AAAAT-GT--AGG-TCAC-CGCTAT-----------TATT-TTTCAT-TTTC-C--CTTCGTTT--T----------------------CAT-A-CAAT---GTTCATTGGAAAT--C--CC-CTTCTTGTA-CCCC---CT-G-TA-GA-----CTCCCGTA-C-C------CCC-----TCCATAAC-ACTGACA-TTGAC-----------------------GCT---TCGTTGCCC-A-AATT-GAAAA--T-C-C-AA-TG-TA-TAAA--Cc
gi|16 : T-A-TA-GG-----TTCCCTTA-C-CTCACACCCCACCCACCCATAAC-CTTG-CA-TTGACC------------------------T---TCATTGCCT-A-AATC-AAAAG----C-C-AC-CG-TC-TAAA--CGACTCAA-AAC--TTCCG-TTTTAG-CG--AT-C------AC---G-T-TATG-----------------------TTAC--ACACACTCTCA-TT-GGCTA----TT
gi|17 : ccgGC--T----T------GTTGTCATAAACTGTTGCAAG-TATA-----C--T-GAA---AACGCAAAAAATGTTAGC----G---TG-------C--TCTCATTG-G-C-TATAA-CTTTTT--TTT--GG--T---TTT-CATGTGACTTAAATGAGTT---GGA----A-TACCA-A-------TA-CCAATGG-AGAGGGCG---TGTAAAA-CGT--TA----Gagta
gi|18 : gcgGCGCAC--TCTCATTG---C-TA--AACTTTTT--TT---GT--T---TT--CA--TATCT-AAA-GAGTT-TGAGA----A-
gi|18 : tag-AAAAA--T-C-CCACATG-TC-TAAA--CAACTCAA-AAC---TCCG-GTTTGC-CG--AT-T-TCGTGGT---GTG-TACG--------------------------C--GCGCACTCTCA-TT--GCTAAACTTTTT--T----T------GTTTTCgcgtacacaccacgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|18 : tagttctcaaactctttagatatGCGTA--CACACCA--CGA--AATCGG-CAAACCGG-A-GT--TTTGAGT-TGTTTAGACATGTGGGATTTTTtc
gi|19 : tagttctcaaactctttagatatgaaaacaaaaaaagtttagcaatgagagtgcgc-GAAGGGGG-TTTCCGGTAA-C--A-TTGT-A--TGTGTTTGTT-CGATGCTG-AAAT-G-GAGAATAAAAGAAATA-TCGA--GTT-CT-TA---CGGTGAC-CT--AC-ATTTCG-ATCCCAAAA-AAGATGGACACtc
gi|2 : GTCTC-CA-T-CTTTTTTG--GGAT-CCAAAATTGT--AGG-TCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGT--CTC-ATTT--TATCAC---CC-AA--CAAACAACAT-A-CAAT---GTTTAC--GAA-C--C--CC-CTTTTTGTA-CCTC----T-A-TA-GA-----CTCCCTTA-C-CTCAC-CCCC-----TCTGTACT-ATTGACA-TTTACCC-TC-CAAA--CTGAAA-----GCT---TCGTTGCCC-A-AATT-AAAAAT-T-C-C-GC-TG-TC-TAAA--CTGCTCATCAAC--TTTCG-GTTTGC-CG--AT-TGTCTCGGC---G-G-TACGCCGATA-TTCCCAA-CG-GTT--TAAC--ACGCGCGCTCA-TTCGGCTA----TTGT--T----TCTTTTCGTATTATCAAACTCTTC--AG-T-CA-----C--T-GAA---AAC-CAAAAAAAGTTAGC----GTTTTACTGCGCAC--TCTCATTGCG-T-TA--A-CTTTTT--TT---GG--T---TT--CA--TGACT--GA-GAGTT-TGATA----A-TGCCA-A-------TAAGCAAT-GCAGAGCGCGTACTGTTAAACCGT--TGGAATGGACTATCGCCGTA--C-CGCCG--AGAC-AATCGG-C-AACCGG-AAGT--TATGAGC-AGTTTAGACA-GC-GGATTTTTAATTT---GGCAAC-G--AAGCTTTCCAGTTGGAGGGTTCAA--GTCAAT-AGTACAGAGGGG--TG--AGAGTAAGGGGAGTTCTATAAGAGTTACAA-GAAGGGGGTTTTCCGGTAAAC--ATTTGT-A--TGTG-TTGTTGGGGCGATA-AAATGG-GAGAACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGACACT--ACGATTTTGCATCCCAAAACAAGATGGAGGC
gi|20 : AGGGGG-TTTCCGGTAA-C--A-TTGT-A--TGTGTTTGTT----CGATGTGAAT-G-GAGAATAAAAGAAATA-TCGA--GTT-CT-TA---CGGTGAC-CT--AC-ATTTCG-ATCCCAAAA-AAGATG
gi|21 : tTCTC-CA-T-CTTTTTTG--GAAT-C-AAAAT-GT--AGG-TCAT-CGCTAT-AA-GAA-CTCCACA-TTTCTT-T
gi|25 : CG-GTTTGC-CG--AT-TGTCTCGGC---G-G-TCCGCCG
gi|3 : tGTCTC-CAAT-CTTTTTTG--GGATTC-AAGATTGTTCAGGATCAC-CGCTAT-AA-AGA-ATCTA-A-TT-CTT-TTGT-TTGCTCCATTT--TA-TGC---CC-AATTCATACA-CAT-A-CGACTCGGTTTAC-GGAA-A--C--CC-CTTCTTGTA-CGTCTTTCT-A-TA-GATGAGTCTGCTTTA-C-CTCAC-CCC------TCCATAATTATTGACAATTGACCCCTC-AAAA--CTGAAT-----GCT---TCGTTGCCC-A-GATT-AAAAA--TCC-C-GC-TG-TC-TAAA--CTG-TC-T-AA-------A-GGCTGCTCG--AT-TGTCTCGGC---G-G-TACGTC
gi|3 : GTCTC-CA-T-CTTTTTTG--GCAT-C-AAAAT-GT--AGG-TCAC-CGC-AT-AA-GAA-CTCTATA-TTTCTT-TTGT-T--CTCCATTT--TATCGC---CC-AA--CAAACA-CATTA-CGAT---GTTTACCGGAA-CA-C--CC-CTTCTTGTA-CCTC---CT-A-TA-GA-----CTTCCTTA-C-CTCAC-CCCC-----TCCATAAT-ATTGACA-TTGACCC-T--CAAA--CTGAAT-----GCT---TCGTTGCCC-A-GATTAAAAAA--T-C-C-GC-TG-TC-TTAA--CT--TCAT-AGC--TTCCGCGTTTG--CG--AT-TGTCTCGGC---G-GCTACGTCGATA-GTCCTAA-CG-GTT--TTAC--ACGCGCTCTCA-TTGGGCTA----TTG---------------GTATTCTCCAACTCTTT--AGTT-CA-----C--T-GAA---AAC-CAAAAAAAG-TAGC----ttcattggctactttttttggttttcagtgaactaaagagttggagaataccaatagcccaatgagagcgcgtgtaaaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcggcggtacgtcttcattgGTCTC-CA-T-CTTTTTTG--G-AT-C-AAAAT-GT--AGG-TCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-T--CTCCATTTTTC-GC-C---CC-AA--CAAACA-CAT-A-CAAC---GTTTAGCGAGA-C--C--CC--TTCTTTTA-CCTC---CT-A--A-GA-----CTCCCTTA-C-CTCAC-CCCC-----TCTGTAAC-ATTGACA-ATGACCC-TC--AAA--CTGAAT-----GCT---TCGTTGCCCCA-GATT-AAAAA--T-C-C-AC-TG-TC-TAAA--GTGCTCAT-A-C--TTCCG-GTTTGC-CG--AT-TGTCTCGA----G-G-TACGCCGATA-GTC-TAA-CG-GTT--TTAC--ACGCGCTCTCA-TT-GGCTA----TTG---------------GTAT-ATCAGACTTTTC--AG-T-CA-----C--T-GAA---AAC-CAAAAAAAGTTAGC----G---TGTTACGCGCAATCTCATTG-G-C-TA--A-CTTTTT--TT---GG--TGTTTT--TA-GTGACT-GAA-GAGTT--GATA----A-TACCA-A-------TAGCCAAT-A-AGAGCGCG---TGTAAAAC-GT--TA----GGACTATCGGCGTA--C-CGCCG--AGAC-AATCGG-CAAACCGG-AAGT--TATGAGCACATTTAGACA--T-GGAATTTTAATCT--GGGCAAC-G--AA-CATT-CAGTTTGAGGG-TCAATAGTCAATCGTTACAGAGGGGTATG--AG-G-GAGGGGAGT
gi|5 : tgCCCTTAAC-CTCAC-CCCC-----TCTATAAC-ACTGACA-TTGACCC-TC--AAA--CTGAAT-----GCTG--TCAT-GCCC-A-GACT-AAAA---T-C-C-AC-TG-TA-TAAA--CGACTCA--AAC--TTTTG-GTTTGC-CG--AT-CACC---GC---G--------------------A-CG-GTG--TTAC--ACGCGCTCTCA-TT-GGCTA----TTG---------------GTGGTCTCAAACTTTTT--AG-T-CATAGNNN--N-NNN---NNN-NNNNNNNNNNNNNN----N---NNNNNNNNNN--NNNNNNNN-N-N-NN--N-NNNNNN--NN---NN--N---NN--NN-NNGGCT-ATT-TAGTC-AGTGA----A-AACCA-AAAAAGGTTAGCCAAT-G-AGAGCGC------------------A----GG--TA-----GCA--C-CGC-----GAC-GATCGG-CAAACTGG-AAGT--TTT-AGT-CGTTTAGACA-GT-GGAGTTTTAGTCT--GGGCAAT-G--AAGCATTC-AGTTTGAGGGT-CAAT-GTCAGT-GTTATAGAGGGGG-TG--AG-GTAAGGG-AGTT-TATAGGAGGTGCAA-GAAGGGGG-TTTCCGGTGAAC--A-TTGTCA--TATGTT---------------AAT-G-GAGAATAAAAGAAATA-TCAA--GTT-CT-TATAGCGGTGAC-CT--AC-ATTTCG-ATCCCCCAA-AAGACGGACAC
gi|6 : TC-CA-T-CTTTTTTTTTGGAT-C-GAA--TGT--AGG-TCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-T--CTC-ATTT--CAGCAA---CT-AA--CAAACA-CAT-A-CATT---TTTTACCGGAA-C--C--CC-CTTACTGTA-CCTC---CT-A-TA-GA-----CT-CCTTA-C-CTCA--CCCC-----TCTGT-AC-ACTGACA-TTGACCC-T--CAAA--TTGAAT-------T---TCATTGCCC-A-GACT-AAAAT--T-C-C-AC-CG-TCTTAAA--CAACTCAA-AAC--TTCCG-GTTTGC-CG--AT-TGTCGCGGT---G-T-TACGCCGATA-GTCTCAA-TG-G-T--TTAC--ATTTGCTCTCA-TT-GGCTA----TTGG--T----T---------TTCTCAAACTCTTC--AG-T-CA-----C--T--AA---AAT-CCAAAAAAGTTAGCCAATG---TTATG---GC--TCTCATTG-G-C-TA--A-CTATTT--TT---GG--T---TT--CA-GTGACT-
gi|7 : tattgatttttttgcaaaacaaaGTGTC-CA-T-CTTTTTTG--GGAT-C-GAAAT-GT--AGG-TCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-T--CTCCATTT--CAGCAT---CT-AA--CAAA-----------AT---GTCTACCGGAAAC--C--CC-CTTCTTGCA-CCTC---CT-A-TA-GA-----CTCCCTTA-C-CTCAC-CCCC-----TTTATAAC-ACTGATA-TTGACCC--C-CAAA--TTGAATTTAATGCT---TCATTGCCC-A-GACT-AAAAA--T-A-C-AC-TG-TC-TAAA--CAACTCAT-AAC--TTCCG-GTTTGC-C----------------------------GATC-GTCTCGA-CG-G---------------CTCTCA-TT-GGCTA----TTG---------------GTATTCTCAAACTCTTT--AG-T-CA-----CAAT-GAA---a
gi|7 : ---CT-AA--CAAACA-CAT-A-CAAT---GTCTACCGGAA-C--C--CCCCTTCTTGTA-CCTC---CT-A-TA-GA-----CTCCCTTA-C-CTCAC-CCCC-----TTTATAAC-ACTGACA-TTGACCC-T--CAAA--CTGAAT-----GCT---TCATTGT-----GACT-AAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAGT----G---TTACGCACAC--TCTCATTG-G-C-TA--T-CTTTTTATTC---GG--T---TTT-CA-GTGACT-AAA-GAGTT-TGAGA----A-TACCA-A-------TAGCCAAT-G-AGAGTGCG---TG-----------------GGACGATC--------------------------GG-CAAACCGG-AAGA--TTTGGAT-TGTTTATACA-GT-GAACT
gi|8 : GTGTC-CA-T-CTTTTTGG--GGAT-C-GAT-TTGT--AGG-TCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-T--CTCCATTT--CAGCAT---CT-AA--CAAACA-CAT-A-CGAT---GTTTATCGGAA-C--C--CC-CATCGTGTA-CCCC---CT-A-TA-GA-----CTCCCCTA-C-CTCAC-CCCC-----TCTATAAC-ATTG-CA-TTGACCC-T--CAAA--TTGAAT-----ACT---TTATTGCCC-A-GACT-AAAAA--T-C-C-AC-TG-TC-TAAA--CAACTCAA-AAC--TTCCG-GTTTGC-CG--CT-TGTC---GC---A-G-TG-------------------------TTAC--GCACACTCTCA-TT-GGCTA----TC-T--T----T------TTATTC----GGTTTTC--AG-T-GA-----C--T-AAA---GAgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCAAACGTTCA--AG-A-AA-----------AATATAAT-TAAAAAAAGTTAGC----G---TG-----C-C--TCTCATTG---C-TA--A-ACTTTT--TT---GG--T---TC-----GTGACT-TAA-AAGTTCTGGGA----AATACCA-AA------TA-CCAAT-G-AG-GCGCG---TTT--AACCGT--TA----G--CTATCG-CGTA--C-CGCCG--AGAC-AACGGG-CAAACTGA-A--C--TATGAAC-CAGTTATACA-GC-GGATTT--AAACT--GG-CAAC----AAGCATTCCAGTT-GAGAGTTCAAT-TGCAAT-ATTATGGAGTAG--TA--A----AA-------TCTATAGA---TACAAAGAAGTG----TTCCG-TA--C--A-TCGT-A--TGT--TTGTT-G--CGAT--AAAT-G-GA-AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-AC-CT--AC-ATTTTT-ATCCCAAAA-AAGATCGAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 2 1111 11111111 222 111111 55555555555555555555555555555555555555 3333333333333333333333333 11111 11111111 22222222222222 1111 11 1111 2222222 222222222222222222222 11 11 11 11 1 2222222222 111 1 111 11 11 11
lowQualScore : 4 3 55 4 0 0 4 1111 4 3 4 4 2 4 55 0 88888888 2 3 4 3 7 55 55 3 7 3 3 3 3 77777 111 44 111111 77 3 3 3 66 3 66 6 3 3 3 1 3 77 44 3 11111111111111111111111111111111111111 666 6 7777777777777777777777777 3 4 4 4 4 00000 55 4 44444444 22222222222222 1 3 3 555 3 0000 44 999 44 888 33 66 3 33 3 8888 7777 3 3 5555555 0 3 4 4 4 666666666666666666666 1 5 88 55 3 3 3 3 3 4 999999 1 1 00 4 4 4 00 4 66 777 77 4 44 555 8 4 3 66 66 8 2222222222 5 888 2 4 4 3 222 4 4 8 55 4 0 55 111 55 4 4 55 55 55 3 3 33 3 3 00 7 3 1 7 3 3 3
lowQualScore : . . .. . . . . .... . . . . . . .. . ........ . . . . . .. .. . . . . . . ..... ... .. ...... .. . . . .. . .. . . . . . . .. .. . ...................................... ... . ......................... . . . . . ..... .. . ........ .............. . . . ... . .... .. ... .. ... .. .. . .. . .... .... . . ....... . . . . . ..................... . . .. .. . . . . . . ...... . . .. . . . .. . .. ... .. . .. ... . . . .. .. . .......... . ... . . . . ... . . . .. . . .. ... .. . . .. .. .. . . .. . . .. . . . . . . .
lowQualScore : 0 1 55 0 8 4 0 4444 0 0 0 0 1 0 55 8 44444444 1 6 7 6 3 00 00 6 3 3 3 1 1 77777 555 22 222222 33 7 1 1 88 1 66 2 1 1 1 0 3 66 66 8 77777777777777777777777777777777777777 000 7 8888888888888888888888888 9 0 0 0 0 00000 55 0 66666666 77777777777777 5 1 3 999 3 1111 66 222 22 555 55 66 1 66 3 6666 1111 3 6 9999999 5 6 0 0 0 000000000000000000000 8 1 66 00 6 6 6 6 6 0 666666 0 4 66 0 0 4 66 4 11 888 99 4 66 333 9 4 3 11 11 9 8888888888 0 888 5 4 0 2 555 0 0 0 55 0 7 55 555 44 0 0 55 55 00 6 6 55 6 6 00 3 6 6 3 6 6 6
consensus : GTCTCCAT-CTTTTTTG--GGATC-GAAATTGTAGGTCAC-CGCTAT-AA-GAA-CTCNATA-TTTCTT-TTAT-TCTCCATTT--CAGCGC---CT-AACAAACA-CATACAAT-GTTTACCGGAA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTA-CCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTGAAT-----GCT--TCGTTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCGTC-CGGC---G-GTACG-------GTCCCAA-CG-GTT--TTAC--GCGCGCTCTCATT-GGCTA----TTGT--T----T------GTATTCTCAAACTCTT-C-A-GT-CA-----C--T-GAAAA------C-CAAAAAAAGTTAGC----G--TT--AC-GCGCGCTCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A-------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCG-G-CAAAC-CGG-AA--GC--TNTGAGC-AGTTTAGACAGC-GGA-TTTTT-AATCT--GGGCAAC-G--AAG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-GTAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TGTTTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATATN-GA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTCTCCAT-CTTTTTTG--GGATC-GAAATTGTAGGTCAC-CGCTAT-AA-GAA-CTCTATA-TTTCTT-TTGT-TCTCCATTT--CAGCGC---CC-AACAAACA-CATACGAT-GTTTACCGGAA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTA-CCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTGAAT-----GCT--TCGTTGCCC-A-GACTAAAAA--TC-C-GC-TG-TC-TAAA-CNA-CTCA-NAACTTCCGGTTTGCCG--ATCGTCTCGGC---G-GTACGCCGATA-GTCCCAA-CG-GTT--TTAC--GCGCGCTCTCATT-GGCTA----TTGT--T----T------GTATTCTCAAACTCTT-C-A-GT-CA-----C--T-GAAAA------C-CAAAAAAAGTTAGC----G--TN--AC-GCGCGCTCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A-------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCG-G-CAAAC-CGG-AA--GT--TNTGAGC-CGTTTAGACAGC-GGA-TTTTT-AATCT--GGGCAAC-G--AAG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATAGA-GGGG--TG--AG-GTAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TGTTTG--TT-GGGCGATG-AAAT-G-GAG--AACAAAAGAAATATC-GA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTCG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATC-AAAAT-GTAGGTCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-TCTCCATTT--TATCGC---C--AACAA-CA-CATACGAT-GTTTACCG-AA-CAGC--CC-ATT-TTGTA-C-TCCTAGTAAGACTCC--TA-CCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTGAATT----GCTGCTCGTTGCCC-A--ATTAAAAAAATCAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAATTGTCTCGGCCCGG-GTACGC--ATAAGTCCTAAACGCGTTATTTAC--ACGCGCTCTCATT-GGCTA----TGGTGAC----T---------TCCTCCAACTCTT-TTA-GT-CA-----C--TTGAAAA------C-CAAAAAAAGTTAGC----A---------GTGCA-TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGTT---TT--CAAGTGA-CT-AAA-GAGTT----GAGAGAAAA-TACCA-A-------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCG-GCCAAAC-CGGAAA--GCTATTTGA-C-AGTTTAGACAGC-GGA-TTTTT-AATCTTGAGGCAACTGATAAG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-GTAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-T-AATTG-TGATTG---T-GGGCGAT--AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : --T---TT--CA-GTGA-CT-AAA-GAGTT---GGAGA----A-TACCA-A-------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCG-G-CAAA--CGG-AA--GC--TATGAGC-AGTTTAGACAGC-GGATTTTTT-AATCT--GGGCAAC-G--AAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAAT-A-TTATGGAGGGGG--TG--AG-GTAA-G-GAAG---TCTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TG-TTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATATA-GA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--TC--AC-GCGCACTCTCATT-G-GGC-TA--A-CTTTTT--TTTTTGG--T---TTTTCA-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA-------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATC-GAAATT--AGGTCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAG-GCATGCA-AACAAACA-CATACAAT-GT--ACCGAAA-C--C--CC-CTTCTTGTAACCTCCTA-TA-GACTCCCTTA-CCTCAC-CC-------TCTATAACACTGACATTGACCCTC--AAA--TTACAT-----GCT--TCATTGCCC-AAGACTAAA----TC-C-AC-TG-GC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCA--GACGTC---GC---G-G-----------GTC---------------AC--GCGCACTCTCATTGGGCTAAC--TTTT--T----T---------TTTT--GGTTTTT-C-A-GT-GA-----C--T-AAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATC-GAAAT-GTAGGTCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAGCAT---TCTAACAAACA-CATACAATTGTTTACCGGAA-C--CACCC-TTTCTTGTAACCTCCTA-TA-GACTCCCTTA-CCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC---AA--TTGAA------GCT--TCATTACCC-A-GACAAAAAA--TC-C-ACTTG-TC-TAAA-CAA-C-CA-AAACTTCCGGTTTGCCG--ATC-------------------------GTCCCAA-CG-GTT--TTACAAACGCGCTCTCATT-GGCTA----TTGT--t
gi|13 : CTCCAT-CTTTTTTG--GGATC-AAAAT-GTAGGTCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAGCGT---TT-AACAA----------AT-GTTTA----------------CTTCT----------TA-TG-TACTCCCTTT-CCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--CAAA--CTGAAT-----GCT--TC------------CT--AAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCCGTTTGCCG--ATCGTC---GC---G-GTG-------------------------TTAC--GCGCGCTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCG-G-TAAAC-CCT-AACTAT--GGTGAGC-AGTTTTAAC-GC-GGA-TTTT---ATCTA-GGGCAAC-G--AAGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTGTAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGAT-A--TGCTG-TTG--TT---GCGGCT-AAAT-G-GAG---AC--AAGAATTAT--GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACtc
gi|15 : aGTCCTCAT-CTTTTGGG--GGATC-AAAAT-GTAGGTCAC-CGCTAT-----------TATT-TTTCAT-TTTC-CCTTCGTTT--T--------------------CATACAAT-GTTCATTGGAAAT--C--CC-CTTCTTGTA-CCCCCTG-TA-GACTCCCGTA-CC------CCC-----TCCATAACACTGACATTGAC----------------------GCT--TCGTTGCCC-A-AATTGAAAA--TC-C-AA-TG-TA-TAAA-Cc
gi|16 : TA-TA-GGTTCCCTTA-CCTCACACCCCACCCACCCATAACCTTG-CATTGACC-----------------------T--TCATTGCCT-A-AATCAAAAG---C-C-AC-CG-TC-TAAA-CGA-CTCA-AAACTTCCGTTTTAGCG--ATC------AC---G-TTATG-----------------------TTAC--ACACACTCTCATT-GGCTA----TT
gi|17 : ccgGC--T----T------GTTGTCATAAACTGTTGC-AAGTATA-----C--T-GAAAA------CGCAAAAAATGTTAGC----G--T----------GCTCTCATT-G-G-C-TATAA-CTTTTT--TTT--GG--T---TTT-CATGTGA-CTTAAATGAGTT-----GGA----A-TACCA-A-------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgC-GCGCACTCTCATT-G---C-TA--AACTTTTT--TT---GT--T---TT--CA--TAT-CT-AAA-GAGTT---TGAGA----A-
gi|18 : tagAAAAA--TC-CCACATG-TC-TAAA-CAA-CTCA-AAAC-TCCGGTTTGCCG--ATT-TCGTGGT---GTGTACG--------------------------C--GCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgtacacaccacgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatat-GAAGGGGG-TTTCCGGTAA-C---A-TTG-T-A--TG-TGTTTG--TT-CGATGCTG-AAAT-G-GAG--AATAAAAGAAATATC-GA--GTT-CT-TA---CGGTGA-C-CT--AC-AT-TTCG-ATCCCAAAA-AAGA-TG-GACACtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TATCAC---CC-AACAAACAACATACAAT-GTTTAC--GAA-C--C--CC-CTTTTTGTA-CCTC-TA-TA-GACTCCCTTA-CCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-CAAA--CTGAAA-----GCT--TCGTTGCCC-A-AATTAAAAAT-TC-C-GC-TG-TC-TAAA-CTG-CTCATCAACTTTCGGTTTGCCG--ATTGTCTCGGC---G-GTACGCCGATA-TTCCCAA-CG-GTT--TAAC--ACGCGCGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCAAACTCTT-C-A-GT-CA-----C--T-GAAAA------C-CAAAAAAAGTTAGC----GTTTT--ACTGCGCACTCTCATT-GCG-T-TA--A-CTTTTT--TT---GG--T---TT--CA--TGA-CT--GA-GAGTT---TGATA----A-TGCCA-A-------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCG-G-C-AAC-CGG-AA--GT--TATGAGC-AGTTTAGACAGC-GGA-TTTTT-AATTT---GGCAAC-G--AAG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAGTAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-T-A--TG-TG-TTG--TTGGGGCGATA-AAATGG-GAG--AACAAAAAGAAAATA-GC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : AGGGGG-TTTCCGGTAA-C---A-TTG-T-A--TG-TGTTTG--TT----CGATGTGAAT-G-GAG--AATAAAAGAAATATC-GA--GTT-CT-TA---CGGTGA-C-CT--AC-AT-TTCG-ATCCCAAAA-AAGA-TG-
gi|21 : tAAAGAAATGTG-GA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCG-G-CAAAC-CG
gi|3 : t--TT--AC-ACGCGCTCTCATTGG-G-C-TA------------TT---GG--TA--TT--CT-CCAA-CT-CTT-TAGTTCACTGAAA-------ACCA-AAAAAAG-TAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCGAG-C-AGC-C-----------TTTAGAC-AGTTTAGACAGCGGGA-TTTTT-AATCT--GGGCAAC-G--AAG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-GTAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-T-A--TG-TGTATGAATT-GGGC-ATA-AAAT-G-GAGCAAACAAAAGAATTA---GA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : CGTCTTCATT-G-G-C-TA----CTTTTT--TT---GG--T---TTT-CA-GTGAACT-AAA-GAGTT---GGAGA----A-TACCA-A-------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG---CAAACGCGG-AA--GC--TATGAA---GTTAAGACAGC-GGA-TTTTTTAATCT--GGGCAAC-G--AAG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGAGGGGG--TG--AG-GTAA-G-GAAG---TCTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA--TG-TGTTTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATATA-GA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcggcggtaGTCTCCAT-CTTTTTTG--G-ATC-AAAAT-GTAGGTCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-GC-C---CC-AACAAACA-CATACAAC-GTTTAGCGAGA-C--C--CC--TTCTTTTA-CCTCCTA--A-GACTCCCTTA-CCTCAC-CCCC-----TCTGTAACATTGACAATGACCCTC--AAA--CTGAAT-----GCT--TCGTTGCCCCA-GATTAAAAA--TC-C-AC-TG-TC-TAAA-GTG-CTCA-TA-CTTCCGGTTTGCCG--ATTGTCTCGA----G-GTACGCCGATA-GTCT-AA-CG-GTT--TTAC--ACGCGCTCTCATT-GGCTA----TTG---------------GTAT-ATCAGACTTTT-C-A-GT-CA-----C--T-GAAAA------C-CAAAAAAAGTTAGC----G--TGTTAC-GCGCAATCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--TGTTTT--TA-GTGA-CT-GAA-GAGTT----GATA----A-TACCA-A-------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCG-G-CAAAC-CGG-AA--GT--TATGAGCACATTTAGACA-T-GGA-ATTTT-AATCT--GGGCAAC-G--AA----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G-GAGG-GGAGT--
gi|5 : tgCCCTTAACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC--AAA--CTGAAT-----GCTG-TCAT-GCCC-A-GACTAAAA---TC-C-AC-TG-TA-TAAA-CGA-CTCA--AACTTTTGGTTTGCCG--ATCACC---GC---G-------------------A-CG-GTG--TTAC--ACGCGCTCTCATT-GGCTA----TTG---------------GTGGTCTCAAACTTTT-T-A-GT-CATAGNNN--N-NNNNN------N-NNNNNNNNNNNNNN----N--NN--NN-NNNNNNNNNNNNN-N-N-N-NN--N-NNNNNN--NN---NN--N---NN--NN-NNGG-CT-ATT-TAGTC---AGTGA----A-AACCA-AAAAAGGTTAGCC-AA-T-G-AGAGCGCAGG----TA--------------------------GCA--CCGC-----GAC-G-ATCG-G-CAAAC-TGG-AA--GT--TTT-AGT-CGTTTAGACAGT-GGA-GTTTT-AGTCT--GGGCAAT-G--AAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTAA-G-GGAGT--T-TAT-AG---GAGGTGCAA-GAAGGGGG-TTTCCGGTGAAC---A-TTG-TCA--TA-TGTT-----------------AAT-G-GAG--AATAAAAGAAATATC-AA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTCG-ATCCCCCAA-AAGA-CG-GACAC
gi|6 : TCCAT-CTTTTTTTTTGGATC-GAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAGCAA---CT-AACAAACA-CATACATT-TTTTACCGGAA-C--C--CC-CTTACTGTA-CCTCCTA-TA-GACT-CCTTA-CCTCA--CCCC-----TCTGT-ACACTGACATTGACCCT--CAAA--TTGAAT-------T--TCATTGCCC-A-GACTAAAAT--TC-C-AC-CG-TCTTAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--ATTGTCGCGGT---G-TTACGCCGATA-GTCTCAA-TG-G-T--TTAC--ATTTGCTCTCATT-GGCTA----TTGG--T----T---------TTCTCAAACTCTT-C-A-GT-CA-----C--T--AAAA------T-CCAAAAAAGTTAGCCAATG--TT--AT-G---GCTCTCATT-G-G-C-TA--A-CTATTT--TT---GG--T---TT--CA-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATC-GAAAT-GTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAGCAT---CT-AACAAA---------AT-GTCTACCGGAAAC--C--CC-CTTCTTGCA-CCTCCTA-TA-GACTCCCTTA-CCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-CAAA--TTGAATTTAATGCT--TCATTGCCC-A-GACTAAAAA--TA-C-AC-TG-TC-TAAA-CAA-CTCA-TAACTTCCGGTTTGCCG--ATCGTCTCGAC---G-GC-----------TCTCA----------TTG-------GCT---ATT-GG-TA----T---------------------TCTCAAACTCTT-T-A-GT-CA-----CAAT-GAAa
gi|7 : ---CT-AACAAACA-CATACAAT-GTCTACCGGAA-C--C--CCCCTTCTTGTA-CCTCCTA-TA-GACTCCCTTA-CCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--CAAA--CTGAAT-----GCT--TCATTGT-----GACTAAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAGT----G--TT--AC-GCACACTCTCATT-G-G-C-TA--T-CTTTTTATTC---GG--T---TTT-CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A-------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGAT--------------------------CG-G-CAAAC-CGG-AA--GA--TTTGGAT-TGTTTATACAGT-GAA-CT
gi|8 : GTGTCCAT-CTTTTTGG--GGATC-GAT-TTGTAGGTCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAGCAT---CT-AACAAACA-CATACGAT-GTTTATCGGAA-C--C--CC-CATCGTGTA-CCCCCTA-TA-GACTCCCCTA-CCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--CAAA--TTGAAT-----ACT--TTATTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--CTTGTC---GC---A-GTG-------------------------TTAC--GCACACTCTCATT-GGCTA----TC-T--T----T------TTATTC----GGTTTT-C-A-GT-GA-----C--T-AAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCAAACG-TT-C-A-A--------------GAAAAATATAAT-TAAAAAAAGTTAGC----G--T--------GC-CTCTCATT-G---C-TA--A-ACTTTT--TT---GG--T---TC-----GTGA-CT-TAA-AAGTTC--TGGGA----AATACCA-AA------TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGG-G-CAAAC-TGA-A----C--TATGAAC-CAGTTATACAGC-GGA-TTT---AAACT--GG-CAAC----AAG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-T-A--TG-T--TTG--TT-G--CGAT--AAAT-G-GA---AACAAAAGAAA-AT---A--AT--CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 2 11111111 222 444444444444444444444444444444444444444444 3333333333333333333333333 1111111 11111111 1111111111111111111111 1111 111111 1111 111111 222222222222222222222 11 11 11 1 2222222222 111 111 1 111 11
lowQualScore : 2 3 3 44 3 3 3 6666 3 2 3 3 3 44 22222222 3 3 3 6 6 44 44 3 6 3 3 3 77777 111 44 77777 33 44 3 3 3 66 3 3 6 3 3 3 4 3 3 44 44 2 888888888888888888888888888888888888888888 666 6 1111111111111111111111111 55 3333333 4 4 4 44 55 4 44444444 5555555555555555555555 3 555 3 0000 44 999 44 888 444444 3 33 3 6666 777777 3 444444 0 3 4 4 4 333333333333333333333 1 5 88 55 3 3 3 3 4 666 1 777 77 4 4 4 4 4 00 4 66 4 777 77 4 44 555 8 4 3 66 66 8 4 3333333333 5 000 4 5 1 666 0 555 5 5 5 66 5 5 66 000 77 5 5 66 777 999 4 4 2 1 4 4 22 8 4 8 0 4 4 4
lowQualScore : . . . .. . . . .... . . . . . .. ........ . . . . . .. .. . . . . . ..... ... .. ..... .. .. . . . .. . . . . . . . . . .. .. . .......................................... ... . ......................... .. ....... . . . .. .. . ........ ...................... . ... . .... .. ... .. ... ...... . .. . .... ...... . ...... . . . . . ..................... . . .. .. . . . . . ... . ... .. . . . . . .. . .. . ... .. . .. ... . . . .. .. . . .......... . ... . . . ... . ... . . . .. . . .. ... .. . . .. ... ... . . . . . . .. . . . . . . .
lowQualScore : 5 3 1 66 3 7 3 5555 3 2 3 3 3 66 00000000 1 1 1 2 2 22 22 1 7 1 1 1 77777 555 22 77777 55 22 7 1 1 88 1 1 2 1 1 1 2 3 3 66 66 5 555555555555555555555555555555555555555555 888 7 7777777777777777777777777 55 8888888 0 0 0 22 55 0 66666666 2222222222222222222222 3 999 3 1111 66 222 22 555 222222 1 66 3 4444 555555 6 111111 5 6 0 0 0 666666666666666666666 8 1 66 00 6 6 6 6 0 222 0 000 22 0 0 0 0 4 66 4 11 4 888 99 4 66 333 9 4 3 11 11 9 4 5555555555 7 000 3 7 4 999 1 666 0 0 0 99 0 6 99 000 22 0 0 99 888 000 4 4 0 1 4 4 22 9 4 9 1 4 4 4
consensus : GTNTCCAT-CTTTTTTG--GGATC-GAAAT-GTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAGCGT-CT---AACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--A--TCGTC---GC---G-GTACG------G----TCCCAA-CG-G-T--TTAC--GCGCGCTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAAAAAAAGTTAGC----G--T--TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGC--TATG---AG-C-A-GTTTAGACAGC-GGA-TTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TG-TTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTCTCCAT-CTTTTTTG--GGATC-GAAATTGTAGGTCAC-CGCTAT-AA-GAA-CTCNATA-TTTCTT-TTAT-TCTCCATTT--CAGCGC-CT---AACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--A--TCGTC-CGGC---G-GTACG------G----TCCCAA-CG-GTT--TTAC--GCGCGCTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAAAAAAAGTTAGC----G--T--TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGC--TNTG---AG-C-A-GTTTAGACAGC-GGA-TTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TGTTTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATA-TNGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATC-AAAAT-GTAGGTCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-TCTCCATTT--TATCGC-C----AACAA-CA-CAT-ACGAT-GTTTACCG--AA-CAGC--CC-ATT-TTGTA-C-TCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTGCCC-A--ATTAAAAAAATCAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAA--TTGTCTCGGCCCGG-GTACGCATAA-G----TCCTAAACGCGTTATTTAC--ACGCGCTCTCATT-GGCTA----TGGTGAC----T---------TCCTCC--AACT------CTT-TTA-GT-CAC--TTGAAAA------C-CAAAAAAAGTTAGC----A---------GTGCA---TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGTT---TT--CAAGTGA-CT-AAA-GAGTT----GAGAGAAAA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATTTG---A--C-A-GTTTAGACAGC-GGA-TTTTT-AATCTTGAGGCAACTGATA-AG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-G-TAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-T-AATTG-TGATTG---T-GGGCGAT--AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : --T---TT--CA-GTGA-CT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAA--CGG-AAGC--TATG---AG-C-A-GTTTAGACAGC-GGATTTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAAT-A-TTATGGAGGGGG--TG--AG-G-TAA-G-GAAG---TCTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TG-TTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--T--CAC-GCGCAC--TCTCATT-G-GGC-TA--A-CTTTTT--TTTTTGG--T---TTTTCA-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATC-GAAATT--AGGTCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAG-GC-ATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AA-C--C--CC-CTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC--AAA--TTA-----CAT-GCT--TCATTGCCC-AAGACTAAA----TC-C-AC-TG-GC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCA--G--ACGTC---GC---G-----G------G----TC---------------AC--GCGCACTCTCATTGGGCTAAC--TTTT--T----T---------TTTT----GGTT------TTT-C-A-GT-GAC--T-AAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATC-GAAAT-GTAGGTCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAGCATTCT---AACAAACA-CAT-ACAATTGTTTACCGG-AA-C--CACCC-TTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC---AA--TTG-----AA--GCT--TCATTACCC-A-GACAAAAAA--TC-C-ACTTG-TC-TAAA-CAA-C-CA-AAACTTCCGGTTTGCCG--A--TC------------------------G----TCCCAA-CG-GTT--TTACAAACGCGCTCTCATT-GGCTA----TTGT--t
gi|13 : CTCCAT-CTTTTTTG--GGATC-AAAAT-GTAGGTCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAGCGT-TT---AACA-----------AAT-GTTTA-----------------CTTCT----------TA-TG-TACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--CAAA--CTG-----AAT-GCT--TC------------CT--AAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCCGTTTGCCG--A--TCGTC---GC---G-GTG----------------------------TTAC--GCGCGCTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-C--TATGGTGAG-C-A-GTTTTAAC-GC-GGA-TTTT---ATCTA-GGGCAAC-G--A-AGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTG-TAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGAT-A--TGCTG-TTG--TT---GCGGCT-AAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACtc
gi|15 : aGTCCTCAT-CTTTTGGG--GGATC-AAAAT-GTAGGTCAC-CGCTAT-------------TA-TTT--T-TCAT-TTTCCCTT------CGT-TT---T--------CAT-ACAAT-GTTCATTGG-AAAT--C--CC-CTTCTTGTA-CCCCCTG-TA-GACTCCCGTACC------CCC-----TCCATAACACTGACATTGAC-----------------------GCT--TCGTTGCCC-A-AATTGAAAA--TC-C-AA-TG-TA-TAAA-Cc
gi|16 : TA-TA-GGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACC------------------------T--TCATTGCCT-A-AATCAAAAG---C-C-AC-CG-TC-TAAA-CGA-CTCA-AAACTTCCGTTTTAGCG--A--TC------AC---G-TTATG--------------------------TTAC--ACACACTCTCATT-GGCTA----TT
gi|17 : ccgGC--T----T------GTTGTCATA--AACT------GTTGC-AAGTATAC--T-GAAAA------CGCAAAAAATGTTAGC----G--T----------GC--TCTCATT-G-G-C-TATAA-CTTTTT--TTT--GG--T---TTT-CATGTGA-CTTAAATGAGTT-----GGA----A-TACCA-A------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgTGGT----G--TG-TAC-GCGCGCACTCTCATT-G---C-TA--AACTTTTT--TT---GT--T---TT--CA--TAT-CT-AAA-GAGTT---TGAGA----A-
gi|18 : tagAAAAA--TC-CCACATG-TC-TAAA-CAA-CTCA-AAAC-TCCGGTTTGCCG--ATTTCGT---GGT---GTGTACG-----------------------------C--GCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatGTGTCCAT-CTTTTTTG--GGATC-GAAAT-GTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAGCAT-CG---AACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TATCAC-CC---AACAAACAACAT-ACAAT-GTTTAC--G-AA-C--C--CC-CTTTTTGTA-CCTC-TA-TA-GACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-CAAA--CTG-----AAA-GCT--TCGTTGCCC-A-AATTAAAAAT-TC-C-GC-TG-TC-TAAA-CTG-CTCATCAACTTTCGGTTTGCCG--A--TTGTCTCGGC---G-GTACGCC----GATATTCCCAA-CG-GTT--TAAC--ACGCGCGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAAAAAAAGTTAGC----GTTT--TACTGCGCAC--TCTCATT-GCG-T-TA--A-CTTTTT--TT---GG--T---TT--CA--TGA-CT--GA-GAGTT---TGATA----A-TGCCA-A------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-C-AAC-CGG-AAGT--TATG---AG-C-A-GTTTAGACAGC-GGA-TTTTT-AATTT---GGCAAC-G--A-AG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAG-TAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-T-A--TG-TG-TTG--TTGGGGCGATA-AAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : AGGGGG-TTTCCGGTAA-C---A-TTG-T-A--TG-TGTTTG--TT----CGATGTGAAT-G-GAG--AATAAAAGAAATA-TCGA--GTT-CT-TA---CGGTGA-C-CT--AC-AT-TTCG-ATCCCAAAA-AAGA-TG-
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : t--T--TAC-ACGCGC--TCTCATTGG-G-C-TA------------TT---GG--TA--TT--CT-CCAA-CT-CTT-TAGTTCACTGAAA-------ACCA-AAAAAAGTAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCG----AGC------AGC--CTTT---AGAC-A-GTTTAGACAGCGGGA-TTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-G-TAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-T-A--TG-TGTATGAATT-GGGC-ATA-AAAT-G-GAGCAAACAAAAGAATTA---GA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----G--G--TAC-GT---C--T-TCATT-G-G-C-TA----CTTTTT--TT---GG--T---TTT-CA-GTGAACT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGC--TATG---A----A-GTTAAGACAGC-GGA-TTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGAGGGGG--TG--AG-G-TAA-G-GAAG---TCTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA--TG-TGTTTG--TT-GGGCGATA-AAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATC-AAAAT-GTAGGTCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-GC-C-CC---AACAAACA-CAT-ACAAC-GTTTAGCGA-GA-C--C--CC--TTCTTTTA-CCTCCTA--A-GACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCTC--AAA--CTG-----AAT-GCT--TCGTTGCCCCA-GATTAAAAA--TC-C-AC-TG-TC-TAAA-GTG-CTCA-TA-CTTCCGGTTTGCCG--A--TTGTC-TCGA---G-GTACGCCGATAG----TCT-AA-CG-GTT--TTAC--ACGCGCTCTCATT-GGCTA----TTG---------------GTAT-ATCA--GACT------TTT-C-A-GT-CAC--T-GAAAA------C-CAAAAAAAGTTAGC----G--TGTTAC-GCGCAA--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--TGTTTT--TA-GTGA-CT-GAA-GAGTT----GATA----A-TACCA-A------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGT--TATG---AG-C-ACATTTAGACA-T-GGA-ATTTT-AATCT--GGGCAAC-G--A-A----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G--GAGG-GGAGT--
gi|5 : tgGTGTCCGT-CTTTTGGG--GGATC-GAAAT-GTAGGTCAC-CGCTAT-AA-GAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-------------------AACA-TATGACAAT-GTTCACCGGAAA-C--C--CC-CTTCTTGCA-CCTCCTA-TA-AACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTGCCC-A-GACTAAAAC--TC-C-AC-TG-TC-TAAA-CGA-CT-A-AAACTTCCAGTTTGCCG--A--TCGTC---GC---G-GTGC----------------------------TAC--CTGCGCTCTCATT-GGCTAACC-TTTT--T----T------G-GTTTTCACTGACTAAATAGCCN-N-N-NN-NNN--N-NNNNN------N-NNNNNNNNNNNNNN----N--N--NNN-NNNNNN--NNNNNNN-N-N-N-NN--N-NNNNNN--NN---NN--N---NC--TA--TGA-CT-AAA-AAGTT---TGAGA----C-CACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAA--------------------------CA--CCGTCG--CGGT-G-ATCGG-CAAAC-CAA-AAG---TTTG---AG-T-C-GTTTATACAGT-GGA--TTTT-AGTCT--GGGC-AT-G--ACAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTTAAGG-G
gi|6 : TCCAT-CTTTTTTTTTGGATC-GAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAGCAA-CT---AACAAACA-CAT-ACATT-TTTTACCGG-AA-C--C--CC-CTTACTGTA-CCTCCTA-TA-GACT-CCTTACCTCA--CCCC-----TCTGT-ACACTGACATTGACCCT--CAAA--TTG-----AAT---T--TCATTGCCC-A-GACTAAAAT--TC-C-AC-CG-TCTTAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--A--TTGTCGCGGT---G-TTACGCCGATAG----TCTCAA-TG-G-T--TTAC--ATTTGCTCTCATT-GGCTA----TTGG--T----T---------TTCTCA--AACT------CTT-C-A-GT-CAC--T--AAAA------T-CCAAAAAAGTTAGCCAATG--T--TAT-G---GC--TCTCATT-G-G-C-TA--A-CTATTT--TT---GG--T---TT--CA-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATC-GAAAT-GTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAGCAT-CT---AACAAA----------AT-GTCTACCGG-AAAC--C--CC-CTTCTTGCA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-CAAA--TTGAATTTAAT-GCT--TCATTGCCC-A-GACTAAAAA--TA-C-AC-TG-TC-TAAA-CAA-CTCA-TAACTTCCGGTTTGCCG--A--TC------------------------G----TCTCGA-CG----------------GCTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CACAAT-GAAa
gi|7 : -CT---AACAAACA-CAT-ACAAT-GTCTACCGG-AA-C--C--CCCCTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTGT-----GACTAAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAGT----G--T--TAC-GCACAC--TCTCATT-G-G-C-TA--T-CTTTTTATTC---GG--T---TTT-CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGAT--------------------------CGG-CAAAC-CGG-AAGA--TTTG---GA-T-T-GTTTATACAGT-GAA-CT
gi|8 : GTGTCCAT-CTTTTTGG--GGATC-GAT-TTGTAGGTCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAGCAT-CT---AACAAACA-CAT-ACGAT-GTTTATCGG-AA-C--C--CC-CATCGTGTA-CCCCCTA-TA-GACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--CAAA--TTG-----AAT-ACT--TTATTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--C--TTGTC---GC---A-GTG----------------------------TTAC--GCACACTCTCATT-GGCTA----TC-T--T----T------TTATTC------GGT------TTT-C-A-GT-GAC--T-AAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCA--AACG-------TT-C-A-A---------GAAAAATATAAT-TAAAAAAAGTTAGC----G--T--------GC-C--TCTCATT-G---C-TA--A-ACTTTT--TT---GG--T---TC-----GTGA-CT-TAA-AAGTTC--TGGGA----AATACCA-AA-----TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--C--TATG---AA-CCA-GTT-ATACAGC-GGA-TTT---AAACT--GG-CAAC----A-AG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A-----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-T-A--TG-T--TTG--TT-G--CGATA-AA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 111 1 22222 4444444444444444444444444444444444444444444444444 3333333333333333333333333 11111111 11111111 11111111111111111 1111 11111111 1111 111111 222222222222222222222 11 11 11 11 222222222 111 1111 111 11 1111 11 1 1
lowQualScore : 1 3 2 44 44 3 77 3 3 3 3 444444 222 1 2 2 2 4 33 33 2 6 3 3 3 77777 55555 77777 33 44 3 3 3 33 2 2 2 5 2 2 2 4 3 3 44 8888888888888888888888888888888888888888888888888 777 44 6 0000000000000000000000000 55 55555555 3 3 3 88 11111111 66 7777 55555555555555555 3 555 3 0000 44 999 3 888 66666666 3 33 3 2222 7777 3 3 444444 0 3 4 4 4 333333333333333333333 1 2 88 55 4 4 4 55555 66 777 77 4 4 4 8 00 4 66 4 777 77 4 44 555 8 4 4 55 66 8 4 0 444444444 5 000 4 5 3 2222 777 5 5 33 5 5 5 5 77 5 0 1 5 5 77 0 5 1111 5 5 0 2 5 5 33 0 5 0 1 5 5 5
lowQualScore : . . . .. .. . .. . . . . ...... ... . . . . . .. .. . . . . . ..... ..... ..... .. .. . . . .. . . . . . . . . . . .. ................................................. ... .. . ......................... .. ........ . . . .. ........ .. .... ................. . ... . .... .. ... . ... ........ . .. . .... .... . . ...... . . . . . ..................... . . .. .. . . . ..... .. ... .. . . . . .. . .. . ... .. . .. ... . . . .. .. . . . ......... . ... . . . .... ... . . .. . . . . .. . . . . . .. . . .... . . . . . . .. . . . . . . .
lowQualScore : 0 1 2 22 22 1 99 1 1 1 1 888888 333 2 9 9 9 3 99 99 9 7 1 1 1 77777 88888 77777 55 22 7 1 1 99 7 9 9 7 9 9 9 4 1 1 22 2222222222222222222222222222222222222222222222222 444 22 2 2222222222222222222222222 00 33333333 6 6 6 66 99999999 99 1111 00000000000000000 3 999 3 1111 66 222 3 555 66666666 1 66 3 3333 1111 3 6 111111 5 6 0 0 0 666666666666666666666 8 8 66 55 0 0 0 88888 11 888 33 4 4 4 9 66 4 11 4 888 99 4 66 333 9 4 4 00 11 9 4 1 333333333 7 000 3 7 0 0000 999 7 7 66 7 7 7 7 99 7 7 7 7 7 99 4 0 5555 0 0 4 5 0 0 88 0 0 0 4 0 0 0
consensus : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AAC--C--CC-CTTCTTGTA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-C--AAACTG-----AA-TGCT--TCGTTGCCC-A-GACT--AAAAA-TC-C-AC-T-GTC-T-AAACGA-CTCA-AAACTTCCGGTTTGCCG--ATCGTC---GC---G--G---TACG------G----TCC--AA-G----G-TTT-AC--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------C-TT-CA-GT-CAC--TGAAAA------C-CAA--AAAAAGTTAGC----G--T--TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---G-GT---TT--C--A-GTGA-CT-AAA-GAGTT---TGAG----AA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTNTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CGT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AAC--C--CC-CTTCTTGTA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-C--AAACTG-----AA-TGCT--TCGTTGCCC-A-GACT--AAAAA-TC-C-AC-T-GTC-T-AAACGA-CTCA-AAACTTCCGGTTTGCCG--ATCGTC---GC---G--G---TACG------G----TCCC-AACG----G-TTT-AC--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------C-TT-CA-GT-CAC--TGAAAA------C-CAA--AAAAAGTTAGC----G--T--TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---G-GT---TT--C--A-GTGA-CT-AAA-GAGTT---TGAG----AA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCACACGCTATAAAGAA-CTCTATA-TTTC-T-TTGT-TCTCCATTT--TAT-CG--CCAAC-AACA-CAT-ACGAT-GTTTACC-G-AACAGC--CC-ATT-TTGTA--CTCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTGCCC-A--ATTAAAAAAA-TCAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAATTGTCTCGGCCCGG--G---TACGCATAA-G----TCCTAAACGCGTTA-TTT-AC--ACGCG--CTCTCATT-GGCTA----TGGTGAC----T---------TCCTCC--AACT------CTTT-TA-GT-CACT-TGAAAA------C-CAA--AAAAAGTTAGC----A---------GTGCA---TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGT---TT--TCAA-GTGA-CT-AAA-GAG-T---TGAGAGAAAA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATTTG---A--C-A-GTTTAGACAGC-GGATTTTT-AATCTTGAGGCAACTGATA-AG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-G-TAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-TAATTG-TGAT-T-G---T-GGGCGAT-AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : T---TT--C--A-GTGA-CT-AAA-GAGTT---GGAG----AA-TACCA-A------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC--GG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--T--CAC-GCGCAC--TCTCATT-G-GGC-TA--A-CTTTTT--TTTTTG-GT---TTTTC--A-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATCGAAA--T-TAGGTCAC-AGCTATTGCGAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAGGCATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AAC--C--CC-CTTCTTGTAACCTCCTA-T-AGACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC----AAATTA-----CA-TGCT--TCATTGCCC-AAGACT--AAA---TC-C-AC-T-GGC-T-AAACAA-CTCA-AAACTTCCGGTTTGCCA--GACGTC---GC---G---------G------G----TC-----------------AC--GCGCA--CTCTCATTGGGCTAAC--TTTT--T----T---------TTTT----GGTT------T-TT-CA-GT-GAC--TAAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-TAAGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAG-CATTCTAACAAACA-CAT-ACAATTGTTTACCGG-AAC--CACCC-TTTCTTGTAACCTCCTA-T-AGACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC-----AATTG-----AA--GCT--TCATTACCC-A-GACA--AAAAA-TC-C-ACTT-GTC-T-AAACAA-C-CA-AAACTTCCGGTTTGCCG--ATC----------------------------G----TCCC-AACG----GTTTT-ACAAACGCG--CTCTCATT-GGCTA----TTGT--t
gi|13 : TCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCAC-CACTAT-AAGAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAG-CGT-TTAACA-----------AAT-GTTTA----------------CTTCT----------TA-T-GTACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--C--AAACTG-----AA-TGCT--TC------------CT----AAA-TC-C-AC-T-GTC-T-AAACGA-CTCA-AAACTTCCCGTTTGCCG--ATCGTC---GC---G--G---TG-----------------------------TT-AC--GCGCG--CTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-CTA--TGGTGAG-C-A-GTTTTAAC-GC-GGATTTT---ATCTA-GGGCAAC-G--A-AGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTG-TAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGATA--TGCTG-T-T-G--TT---GCGGCTAAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACgtc
gi|15 : aGTCCTCAT-CTTTTGGG--GGATCAAAA--TGTAGGTCAC-CGCTAT------------TA-TT--TT-TCAT-TTTCCCTT-------CGT-TT-------T-CAT-ACAAT-GTTCATTGGAAAT--C--CC-CTTCTTGTA-CCCCCTG-T-AGACTCCCGT-----AC-CCCC-----TCCATAACACTGACATTGAC-----------------------GCT--TCGTTGCCC-A-AATT--GAAAA-TC-C-AA-T-GTA-T-AAACc
gi|16 : TA-T-AGGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACC------------------------T--TCATTGCCT-A-AATC--AAAAG--C-C-AC-C-GTC-T-AAACGA-CTCA-AAACTTCCGTTTTAGCG--ATCA------C---G--T---TATG---------------------------TT-AC--ACACA--CTCTCATT-GGCTA----TT
gi|17 : ccgGC--T----T------GTTGTCATA--AACT------G-TTGCAAGTATAC--TGAAAA------CGCAA--AAAATGTTAGC----G--T----------GC--TCTCATT-G-G-C-TATAA-CTTTTT--TTT--G-GT---TTT-C--ATGTGA-CTTAAATGAGTT-----GG----AA-TACCA-A------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgTGGT----G--TG-TAC-GCGCGCACTCTCATT-G---C-TA--AACTTTTT--TT---G-TT---TT--C--A--TAT-CT-AAA-GAGTT---TGAG----AA-
gi|18 : tag--AAAAA-TC-CCACAT-GTC-T-AAACAA-CTCA-AAAC-TCCGGTTTGCCG--ATT-TC---GT---G--G---T---------------------------G-TGT-AC--GCGCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAAC--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AAGAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TAT-CAC-CCAACAAACAACAT-ACAAT-GTTTAC--G-AAC--C--CC-CTTTTTGTA-CCTC-TA-T-AGACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-C--AAACTG-----AA-AGCT--TCGTTGCCC-A-AATT--AAAAATTC-C-GC-T-GTC-T-AAACTG-CTCATCAACTTTCGGTTTGCCG--ATTGTCTCGGC---G--G---TACGCC----GATATTCCC-AACG----G-TTTAAC--ACGCG--CGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCA--AACT------C-TT-CA-GT-CAC--TGAAAA------C-CAA--AAAAAGTTAGC----GTTT--TACTGCGCAC--TCTCATT-GCG-T-TA--A-CTTTTT--TT---G-GT---TT--C--A--TGA-CT--GA-GAGTT---TGAT----AA-TGCCA-A------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-C-AAC-CGG-AAGTTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATTT---GGCAAC-G--A-AG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAG-TAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-TA--TG-TG-T-T-G--TTGGGGCGATAAAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : CAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCA-TT--CA--CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAAC--C--CC-CT
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : t--T--TAC-ACGCGC--TCTCATTGG-G-C-TA------------TT---G-GTA--TT--C--T-CCAA-CT-CTT-TAGTTCACTGAA----A---ACCA-AAAAAAGTAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCG----AGC------AGCCT--TT---AGAC-A-GTTTAGACAGCGGGATTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-G-TAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-TA--TG-TG-TAT-GAATT-GGGC-ATAAAAT-G-GAGCAAACAAAAG-AAT--TAGA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----G--G--TAC-GT---C--T-TCATT-G-G-C-TA----CTTTTT--TT---G-GT---TTT-C--A-GTGAACT-AAA-GAGTT---GGAG----AA-TACCA-A------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGCTA--TG---A----A-GTTAAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA-TG-TG-T-TTG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATCAAAA--TGTAGGTCAC-CGCTG---AAAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-G-C-C-CCAACAAACA-CAT-ACAAC-GTTTAGCGA-GAC--C--CC--TTCTTTTA-CCTCCTA---AGACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCTC----AAACTG-----AA-TGCT--TCGTTGCCCCA-GATT--AAAAA-TC-C-AC-T-GTC-T-AAAGTG-CTCA-TA-CTTCCGGTTTGCCG--ATTGTC---TC---GAGG---TACGCCGATAG----TCT--AACG----G-TTTTAC--ACGCG--CTCTCATT-GGCTA----TTG---------------GTAT-ATCA--GACT------T-TT-CA-GT-CAC--TGAAAA------C-CAA--AAAAAGTTAGC----G--TGTTAC-GCGCAA--TCTCATT-G-G-C-TA--A-CTTTTT--TT---G-GTGTTTT--T--A-GTGA-CT-GAA-GAGTT----GAT----AA-TACCA-A------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGTTA--TG---AG-C-ACATTTAGACA-T-GGAATTTT-AATCT--GGGCAAC-G--A-A----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G--GAGG-GGAGT--
gi|5 : tgGTGTCCGT-CTTTTGGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-----------------AACA-TATGACAAT-GTTCACCGGAAAC--C--CC-CTTCTTGCA-CCTCCTA-T-AAACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCT--C--AAACTG-----AA-TGCT--TCATTGCCC-A-GACT--AAAAC-TC-C-AC-T-GTC-T-AAACGA-CT-A-AAACTTCCAGTTTGCCG--ATCGTC---GC---G--G---TGC-----------------------------T-AC--CTGCG--CTCTCATT-GGCTAACC-TTTT--T----T------G-GTTTTCACTGACTAAATAGC-CN-NN-NN-NNN--NNNNNN------N-NNN--NNNNNNNNNNN----N--N--NNN-NNNNNN--NNNNNNN-N-N-N-NN--N-NNNNNN--NN---N-NN---NC--T--A--TGA-CT-AAA-AAGTT---TGAG----AC-CACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAA--------------------------CA--CCGTCG--CGGT-G-ATCGG-CAAAC-CAA-AAGTT---TG---AG-T-C-GTTTATACAGT-GGA-TTTT-AGTCT--GGGC-AT-G--ACAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTTAAGG-G
gi|6 : TCCAT-CTTTTTTTTTGGATCGAA---TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAG-CAA-CTAACAAACA-CAT-ACATT-TTTTACCGG-AAC--C--CC-CTTACTGTA-CCTCCTA-T-AGACT-CCTTACCTCA--CCCC-----TCTGT-ACACTGACATTGACCCT--C--AAATTG-----AA-T--T--TCATTGCCC-A-GACT--AAAAT-TC-C-AC-C-GTCTT-AAACAA-CTCA-AAACTTCCGGTTTGCCG--ATTGTC---GC---G--GTGTTACGCCGATAG----TCTC-AATG----G-TTT-AC--ATTTG--CTCTCATT-GGCTA----TTGG--T----T---------TTCTCA--AACT------C-TT-CA-GT-CAC--T-AAAA------T-CCA--AAAAAGTTAGCCAATG--T--TAT-G---GC--TCTCATT-G-G-C-TA--A-CTATTT--TT---G-GT---TT--C--A-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAA----------AAT-GTCTACCGGAAAC--C--CC-CTTCTTGCA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-C--AAATTGAATTTAA-TGCT--TCATTGCCC-A-GACT--AAAAA-TA-C-AC-T-GTC-T-AAACAA-CTCA-TAACTTCCGGTTTGCCG--ATCGTC---TC---G-------ACG--------------------------------------G--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------C-TT-TA-GT-CACAATGAAa
gi|7 : -CTAACAAACA-CAT-ACAAT-GTCTACCGG-AAC--C--CCCCTTCTTGTA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--C--AAACTG-----AA-TGCT--TCATTGT-----GACT--AAAGA-gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAG-TT-C-AC-T-GTA-T-AAACAA-TCCA-AATCTTCCGGTTTGCCG--ATCGTC--------------------------------CC-A------------------CGCA--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------C-TT-TA-GT-CAC--TGAAAA------C-CGAATAAAAAGATAGC----
gi|8 : AGT----G--T--TAC-GCACAC--TCTCATT-G-G-C-TA--T-CTTTTTATTC---G-GT---TTT-C--A-GTGA-CT-AAA-GAGTT---TGAG----AA-TACCA-A------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGATCGGCAAA--CCGcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|8 : agttcactgtataaacaatccaaatcttcGTGTCCAT-CTTTTTGG--GGATCGATT--TGTAGGTCAC-CGCTGT-TTGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACGAT-GTTTATCGG-AAC--C--CC-CATCGTGTA-CCCCCTA-T-AGACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--C--AAATTG-----AA-TACT--TTATTGCCC-A-GACT--AAAAA-TC-C-AC-T-GTC-T-AAACAA-CTCA-AAACTTCCGGTTTGCCG--CTTGTC---GC---A--G---TG-----------------------------TT-AC--GCACA--CTCTCATT-GGCTA----TC-T--T----T------TTATTC------GGT------T-TT-CA-GT-GAC--TAAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCA--AACG--------TT-CA-A--------GAAAAATATAAT-TAA--AAAAAGTTAGC----G--T--------GC-C--TCTCATT-G---C-TA--A-ACTTTT--TT---G-GT---TC-------GTGA-CT-TAA-AAGTTC--TGGG----AAATACCA-AA-----TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--CTA--TG---AA-CCA-GTT-ATACAGC-GGATTT---AAACT--GG-CAAC----A-AG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A-----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-TA--TG-T--T-T-G--TT-G--CGATAAA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 222 555555555555555555555555555555555555555555555555555 3333333333333333333333333 1111111 11111111 11111111111111111 1111 111111 1111 111111 222222222222222222222 11 11 11 11 222222222 111 1111 111 11 1111 11 1 1
lowQualScore : 3 2 44 44 3 44 3 3 3 3 3 444444 0 5 3 1 2 2 2 8 5 33 33 2 6 3 3 3 77777 111 44 77777 33 44 3 3 3 66 2 2 5 2 2 2 4 3 3 44 000000000000000000000000000000000000000000000000000 777 44 6 0000000000000000000000000 55 1111111 3 3 3 3 55 3 11111111 66 7777 55555555555555555 3 555 3 0000 44 999 44 888 444444 3 33 3 6666 777777 3 444444 0 3 4 4 4 333333333333333333333 1 2 88 55 4 4 4 55555 66 777 77 4 4 4 8 00 4 66 4 777 77 4 44 555 8 4 4 55 66 8 4 0 444444444 5 000 4 5 3 2222 777 5 5 33 5 5 5 5 77 5 0 1 5 5 77 0 5 1111 5 5 0 2 5 5 33 0 5 0 1 5 5 5
lowQualScore : . . .. .. . .. . . . . . ...... . . . . . . . . . .. .. . . . . . ..... ... .. ..... .. .. . . . .. . . . . . . . . . .. ................................................... ... .. . ......................... .. ....... . . . . .. . ........ .. .... ................. . ... . .... .. ... .. ... ...... . .. . .... ...... . ...... . . . . . ..................... . . .. .. . . . ..... .. ... .. . . . . .. . .. . ... .. . .. ... . . . .. .. . . . ......... . ... . . . .... ... . . .. . . . . .. . . . . . .. . . .... . . . . . . .. . . . . . . .
lowQualScore : 1 2 22 22 1 88 1 1 1 1 1 888888 1 7 6 4 9 9 9 6 7 99 99 9 7 1 1 1 77777 555 22 77777 55 22 7 1 1 33 9 9 7 9 9 9 4 1 1 22 777777777777777777777777777777777777777777777777777 444 22 2 2222222222222222222222222 00 6666666 6 6 6 6 00 6 99999999 99 1111 00000000000000000 3 999 3 1111 66 222 22 555 222222 1 66 3 4444 555555 6 111111 5 6 0 0 0 666666666666666666666 8 8 66 55 0 0 0 88888 11 888 33 4 4 4 9 66 4 11 4 888 99 4 66 333 9 4 4 00 11 9 4 1 333333333 7 000 3 7 0 0000 999 7 7 66 7 7 7 7 99 7 7 7 7 7 99 4 0 5555 0 0 4 5 0 0 88 0 0 0 4 0 0 0
consensus : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCGTC---GC---G--G---TACG------G-----TC----A---G-----TTT-AC--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T--TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCGTC---GC---G--G---TACG------G-----TC-C--AA-GG-----TTT-AC--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T--TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--T---TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-TCTCCATTT--TAT-CGC-C-AACAA-CA-CAT-ACGAT-GTTTACCG--AA-CAGC--CC-ATT-TTGTA-C-TCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTGCCC-A--ATTAAAAAAATCAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAATTGTCTCGGCCCGG--G---TACGCATAA-G-----TC-CTAAA-CGCGTTATTT-AC--ACGCG--CTCTCATT-GGCTA----TGGTGAC----T---------TCCTCC--AACT------CTT-TTA-GT-CAC--TTGAAAA------C-CAA--AAAAAGTTAGC----A---------GTGCA---TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGTT---TT--CAAGTGA-CT-AAA-GAGTT----GAGAGAAAA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATTTG---A--C-A-GTTTAGACAGC-GGATTTTT-AATCTTGAGGCAACTGATA-AG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-G-TAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-TAATTG-TGAT-T-G---T-GGGCGAT-AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : --T---TT--CA-GTGA-CT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC--GG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--T--CAC-GCGCAC--TCTCATT-G-GGC-TA--A-CTTTTT--TTTTTGG--T---TTTTCA-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATCGAAA--T-TAGGTCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAGGCATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AA-C--C--CC-CTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC--AAA--TTA-----CAT-GCT--TCATTGCCC-AAGACTAAA----TC-C-AC-TG-GC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCA--GACGTC---GC---G---------G------G-----TC------------------AC--GCGCA--CTCTCATTGGGCTAAC--TTTT--T----T---------TTTT----GGTT------TTT-C-A-GT-GAC--T-AAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAG-CATTCTAACAAACA-CAT-ACAATTGTTTACCGG-AA-C--CACCC-TTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC---AA--TTG-----AA--GCT--TCATTACCC-A-GACAAAAAA--TC-C-ACTTG-TC-TAAA-CAA-C-CA-AAACTTCCGGTTTGCCG--ATCGTC---CC---A-------ACG------G-----T---------------TTT-ACAAACGCG--CTCTCATT-GGCTA----TTGT--t
gi|13 : TCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAG-CGT-TTAACA-----------AAT-GTTTA-----------------CTTCT----------TA-TG-TACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--CAAA--CTG-----AAT-GCT--TC------------CT--AAA--TC-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCCGTTTGCCG--ATCGTC---GC---G--G---TG-------------------------------TT-AC--GCGCG--CTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-CTA--TGGTGAG-C-A-GTTTTAAC-GC-GGATTTT---ATCTA-GGGCAAC-G--A-AGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTG-TAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGATA--TGCTG-T-T-G--TT---GCGGCTAAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACgtc
gi|15 : aCAT-CTTTTGGG--GGATCAAAA--TGTAGGTCAC-CGCTAT-------------TA-TTT--T-TCAT-TTTCCCTT-------CGT-TTT--------CAT-ACAAT-GTTCATTGG-AAAT--C--CC-CTTCTTGTA-CCCCCTG-TA-GACTCCCGTACC------CCC-----TCCATAACACTGACATTGAC-----------------------GCT--TCGTTGCCC-A-AATTGAAAA--TC-C-AA-TG-TA-TAAA-Cc
gi|16 : TA-TA-GGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACC------------------------T--TCATTGCCT-A-AATCAAAAG---C-C-AC-CG-TC-TAAA-CGA-CTCA-AAACTTCCGTTTTAGCG--A---TC---AC---G--T---TATG-----------------------------TT-AC--ACACA--CTCTCATT-GGCTA----TTaggac
gi|17 : ccgGC--T----T------GTTGTCATA--AACT------GTTGC-AAGTATAC--T-GAAAA------CGCAA--AAAATGTTAGC----G--T----------GC--TCTCATT-G-G-C-TATAA-CTTTTT--TTT--GG--T---TTT-CATGTGA-CTTAAATGAGTT-----GGA----A-TACCA-A------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgTGGT----G--TG-TAC-GCGCGCACTCTCATT-G---C-TA--AACTTTTT--TT---GT--T---TT--CA--TAT-CT-AAA-GAGTT---TGAGA----A-
gi|18 : tagAAAAA--TC-CCACATG-TC-TAAA-CAA-CTCA-AAAC-TCCGGTTTGCCG--ATT-TC---GT---G--G---T-------------------------G-----TGT-AC--GCGCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TAT-CAC-CCAACAAACAACAT-ACAAT-GTTTAC--G-AA-C--C--CC-CTTTTTGTA-CCTC-TA-TA-GACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-CAAA--CTG-----AAA-GCT--TCGTTGCCC-A-AATTAAAAAT-TC-C-GC-TG-TC-TAAA-CTG-CTCATCAACTTTCGGTTTGCCG--ATTGTCTCGGC---G--G---TACGCC----GATATTCC-C--AACGG-----TTTAAC--ACGCG--CGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----GTTT--TACTGCGCAC--TCTCATT-GCG-T-TA--A-CTTTTT--TT---GG--T---TT--CA--TGA-CT--GA-GAGTT---TGATA----A-TGCCA-A------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-C-AAC-CGG-AAGTTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATTT---GGCAAC-G--A-AG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAG-TAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-TA--TG-TG-T-T-G--TTGGGGCGATAAAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : CAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCA-TT--CA--CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CT
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : t--T--TAC-ACGCGC--TCTCATTGG-G-C-TA------------TT---GG--TA--TT--CT-CCAA-CT-CTT-TAGTTCACTGAAA-------ACCA-AAAAAAGTAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCG----AGC------AGCCT--TT---AGAC-A-GTTTAGACAGCGGGATTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-G-TAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-TA--TG-TG-TAT-GAATT-GGGC-ATAAAAT-G-GAGCAAACAAAAG-AAT--TAGA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----G--G--TAC-GT---C--T-TCATT-G-G-C-TA----CTTTTT--TT---GG--T---TTT-CA-GTGAACT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGCTA--TG---A----A-GTTAAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA-TG-TG-T-TTG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATCAAAA--TGTAGGTCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-G-C-C-CCAACAAACA-CAT-ACAAC-GTTTAGCGA-GA-C--C--CC--TTCTTTTA-CCTCCTA--A-GACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCTC--AAA--CTG-----AAT-GCT--TCGTTGCCCCA-GATTAAAAA--TC-C-AC-TG-TC-TAAA-GTG-CTCA-TA-CTTCCGGTTTGCCG--ATTGTC---TC---GAGG---TACGCCGATAG-----TC-T--AACGG-----TTTTAC--ACGCG--CTCTCATT-GGCTA----TTG---------------GTAT-ATCA--GACT------TTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--TGTTAC-GCGCAA--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG--TGTTTT--TA-GTGA-CT-GAA-GAGTT----GATA----A-TACCA-A------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGTTA--TG---AG-C-ACATTTAGACA-T-GGAATTTT-AATCT--GGGCAAC-G--A-A----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G--GAGG-GGAGT--
gi|5 : tgGTGTCCGT-CTTTTGGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-----------------AACA-TATGACAAT-GTTCACCGG-AAAC--C--CC-CTTCTTGCA-CCTCCTA-TA-AACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTGCCC-A-GACTAAAAC--TC-C-AC-TG-TC-TAAA-CGA-CT-A-AAACTTCCAGTTTGCCG--ATCGTC---GC---G--G---TGC-------------------------------T-AC--CTGCG--CTCTCATT-GGCTAACC-TTTT--T----T------G-GTTTTCACTGACTAAATAGCCN-N-N-NN-NNN--N-NNNNN------N-NNN--NNNNNNNNNNN----N--N--NNN-NNNNNN--NNNNNNN-N-N-N-NN--N-NNNNNN--NN---NN--N---NC--TA--TGA-CT-AAA-AAGTT---TGAGA----C-CACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAA--------------------------CA--CCGTCG--CGGT-G-ATCGG-CAAAC-CAA-AAGTT---TG---AG-T-C-GTTTATACAGT-GGA-TTTT-AGTCT--GGGC-AT-G--ACAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTTAAGG-G
gi|6 : TCCAT-CTTTTTTTTTGGATCGAA---TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAG-CAA-CTAACAAACA-CAT-ACATT-TTTTACCGG-AA-C--C--CC-CTTACTGTA-CCTCCTA-TA-GACT-CCTTACCTCA--CCCC-----TCTGT-ACACTGACATTGACCCT--CAAA--TTG-----AAT---T--TCATTGCCC-A-GACTAAAAT--TC-C-AC-CG-TCTTAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--ATTGTC---GC---G--GTGTTACGCCGATAG-----TCTC--AATGG-----TTT-AC--ATTTG--CTCTCATT-GGCTA----TTGG--T----T---------TTCTCA--AACT------CTT-C-A-GT-CAC--T--AAAA------T-CCA--AAAAAGTTAGCCAATG--T--TAT-G---GC--TCTCATT-G-G-C-TA--A-CTATTT--TT---GG--T---TT--CA-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAA----------AAT-GTCTACCGGAAA-C--C--CC-CTTCTTGCA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-CAAA--TTGAATTTAAT-GCT--TCATTGCCC-A-GACTAAAAA--TA-C-AC-TG-TC-TAAA-CAA-CTCA-TAACTTCCGGTTTGCCG--ATCGTC---TC---G-------ACG----------------------------------------G--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CACAAT-GAAa
gi|7 : -CTAACAAACA-CAT-ACAAT-GTCTACCGG-AA-C--C--CCCCTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTGT-----GACTAAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAG--TT-C-AC-TG-TA-TAAA-CAA-TCCA-AATCTTCCGGTTTGCCG--ATCGTC--------------------------------C-C--A------------------CGCA--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CAC--T-GAAAA------C-CGAATAAAAAGATAGC----
gi|8 : AGT----G--T--TAC-GCACAC--TCTCATT-G-G-C-TA--T-CTTTTTATTC---GG--T---TTT-CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGATCGGCAAA--CCGcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|8 : agttcactgtataaacaatccaaatcttcGTGTCCAT-CTTTTTGG--GGATCGATT--TGTAGGTCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACGAT-GTTTATCGG-AA-C--C--CC-CATCGTGTA-CCCCCTA-TA-GACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--CAAA--TTG-----AAT-ACT--TTATTGCCC-A-GACTAAAAA--TC-C-AC-TG-TC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--CTTGTC---GC---A--G---TG-------------------------------TT-AC--GCACA--CTCTCATT-GGCTA----TC-T--T----T------TTATTC------GGT------TTT-C-A-GT-GAC--T-AAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCA--AACG-------TT-C-A-A---------GAAAAATATAAT-TAA--AAAAAGTTAGC----G--T--------GC-C--TCTCATT-G---C-TA--A-ACTTTT--TT---GG--T---TC-----GTGA-CT-TAA-AAGTTC--TGGGA----AATACCA-AA-----TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--CTA--TG---AA-CCA-GTT-ATACAGC-GGATTT---AAACT--GG-CAAC----A-AG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A-----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-TA--TG-T--T-T-G--TT-G--CGATAAA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 222 4444444444444444444444444444444444444444444444444444 3333333333333333333333333 1111111 11111111 111111111111111111111 1111 111111 1111 111111 222222222222222222222 11 11 11 11 222222222 111 1111 111 11 1111 11 1 1
lowQualScore : 3 2 44 44 3 44 3 3 3 3 3 444444 0 5 3 1 2 2 2 8 5 33 33 2 6 3 3 3 77777 111 44 77777 33 44 3 3 3 33 2 2 2 5 2 2 2 4 3 3 44 44 1111111111111111111111111111111111111111111111111111 3 666 44 6 0000000000000000000000000 55 1111111 3 3 3 3 55 3 11111111 66 444444444444444444444 3 555 3 0000 44 999 999 3 444444 3 33 3 2222 777777 3 444444 0 3 4 4 4 333333333333333333333 1 2 88 55 4 4 4 55555 66 777 77 4 4 4 8 00 4 66 4 777 77 4 44 555 8 4 4 55 66 8 4 0 444444444 5 000 4 5 3 2222 777 5 5 33 5 5 5 5 77 5 0 1 5 5 77 0 5 1111 5 5 0 2 5 5 33 0 5 0 1 5 5 5
lowQualScore : . . .. .. . .. . . . . . ...... . . . . . . . . . .. .. . . . . . ..... ... .. ..... .. .. . . . .. . . . . . . . . . . .. .. .................................................... . ... .. . ......................... .. ....... . . . . .. . ........ .. ..................... . ... . .... .. ... ... . ...... . .. . .... ...... . ...... . . . . . ..................... . . .. .. . . . ..... .. ... .. . . . . .. . .. . ... .. . .. ... . . . .. .. . . . ......... . ... . . . .... ... . . .. . . . . .. . . . . . .. . . .... . . . . . . .. . . . . . . .
lowQualScore : 1 2 22 22 1 88 1 1 1 1 1 888888 1 7 6 4 9 9 9 6 7 99 99 9 7 1 1 1 77777 555 22 77777 55 22 7 1 1 77 9 9 9 7 9 9 9 4 1 1 22 22 2222222222222222222222222222222222222222222222222222 1 777 22 2 2222222222222222222222222 00 6666666 6 6 6 6 00 6 99999999 99 555555555555555555555 3 999 3 1111 66 222 666 1 222222 1 66 3 3333 555555 6 111111 5 6 0 0 0 666666666666666666666 8 8 66 55 0 0 0 88888 11 888 33 4 4 4 9 66 4 11 4 888 99 4 66 333 9 4 4 00 11 9 4 1 333333333 7 000 3 7 0 0000 999 7 7 66 7 7 7 7 99 7 7 7 7 7 99 4 0 5555 0 0 4 5 0 0 88 0 0 0 4 0 0 0
consensus : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TCT-AAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GGT---ACG----------------GT------C--------TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TCT-AAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GGT---ACG----------------GT------C-----AG-TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-TCTCCATTT--TAT-CGC-C-AACAA-CA-CAT-ACGAT-GTTTACCG--AA-CAGC--CC-ATT-TTGTA-C-TCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTG-CCCA--ATTAAAAAAAT-CAC-GC-TGGTCT-AAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAATTG--TCTCGGCCCGGGT---ACGCATAAGTCCTAAACGCGT------T-----A--TTTA-C--ACGCG--CTCTCATT-GGCTA----TGGTGAC----T---------TCCTCC--AACT------CTT-TTA-GT-CAC--TTGAAAA------C-CAA--AAAAAGTTAGC----A--------GTGCA---TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGT-T-TT--CAAGTGA-CT-AAA-GAGTT----GAGAGAAAA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATTTG---A--C-A-GTTTAGACAGC-GGATTTTT-AATCTTGAGGCAACTGATA-AG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-G-TAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-TAATTG-TGAT-T-G---T-GGGCGAT-AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : ---T-TT--CA-GTGA-CT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC--GG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--T-CAC-GCGCAC--TCTCATT-G-GGC-TA--A-CTTTTT--TTTTTGG---T-TTTTCA-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATCGAAA--T-TAGGTCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAGGCATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AA-C--C--CC-CTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC--AAA--TTA-----CAT-GCT--TCATTG-CCCAAGACTAAA----T-C-C-AC-TG-GCT-AAA-CAA-CTCA-AAACTTCCGGTTTGCCA--GACG--TC---GC---G-------G----------------GT------C-----------A-C--GCGCA--CTCTCATTGGGCTAAC--TTTT--T----T---------TTTT----GGTT------TTT-C-A-GT-GAC--T-AAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAG-CATTCTAACAAACA-CAT-ACAATTGTTTACCGG-AA-C--CACCC-TTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC---AA--TTG-----AA--GCT--TCATTA-CCCA-GACAAAAAA--T-C-C-ACTTG-TCT-AAA-CAA-C-CA-AAACTTCCGGTTTGCCG--ATCG--TC---CC---A-----ACG----------------GT---------------TTTA-CAAACGCG--CTCTCATT-GGCTA----TTGT--t
gi|13 : TCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAG-CGT-TTAACA-----------AAT-GTTTA-----------------CTTCT----------TA-TG-TACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--CAAA--CTG-----AAT-GCT--TC------------CT--AAA--T-C-C-AC-TG-TCT-AAA-CGA-CTCA-AAACTTCCCGTTTGCCG--ATCG--TC---GC---GGT---G------------------------------------TTA-C--GCGCG--CTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-CTA--TGGTGAG-C-A-GTTTTAAC-GC-GGATTTT---ATCTA-GGGCAAC-G--A-AGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTG-TAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGATA--TGCTG-T-T-G--TT---GCGGCTAAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACgtc
gi|15 : aCAT-CTTTTGGG--GGATCAAAA--TGTAGGTCAC-CGCTAT-------------TA-TTT--T-TCAT-TTTCCCTT-------CGT-TTT--------CAT-ACAAT-GTTCATTGG-AAAT--C--CC-CTTCTTGTA-CCCCCTG-TA-GACTCCCGTACC------CCC-----TCCATAACACTGACATTGAC-----------------------GCT--TCGTTG-CCCA-AATTGAAAA--T-C-C-AA-TG-TAT-AAA-Cc
gi|16 : TA-TA-GGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACC------------------------T--TCATTG-CCTA-AATCAAAAG----C-C-AC-CG-TCT-AAA-CGA-CTCA-AAACTTCCGTTTTAGCG--A-----TC---AC---GTT---ATG----------------------------------TTA-C--ACACA--CTCTCATT-GGCTA----TTaggac
gi|17 : ccgGC--T----T------GTTGTCATA--AACT------GTTGC-AAGTATAC--T-GAAAA------CGCAA--AAAATGTTAGC----G--T---------GC--TCTCATT-G-G-C-TATAA-CTTTTT--TTT--GG---T-TTT-CATGTGA-CTTAAATGAGTT-----GGA----A-TACCA-A------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgTGGT----G--TGTAC-GCGCGCACTCTCATT-G---C-TA--AACTTTTT--TT---GT---T-TT--CA--TAT-CT-AAA-GAGTT---TGAGA----A-
gi|18 : tagAAAAA--T-C-CCACATG-TCT-AAA-CAA-CTCA-AAAC-TCCGGTTTGCCG--ATT---TC---GT---GGT-------------------------------------G-TGTA-C--GCGCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TAT-CAC-CCAACAAACAACAT-ACAAT-GTTTAC--G-AA-C--C--CC-CTTTTTGTA-CCTC-TA-TA-GACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-CAAA--CTG-----AAA-GCT--TCGTTG-CCCA-AATTAAAAA--TTC-C-GC-TG-TCT-AAA-CTG-CTCATCAACTTTCGGTTTGCCG--ATTG--TCTCGGC---GGT---ACGCCGAT-----------ATTCCCAAC-----GG-TTTAAC--ACGCG--CGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----GTTT-TACTGCGCAC--TCTCATT-GCG-T-TA--A-CTTTTT--TT---GG---T-TT--CA--TGA-CT--GA-GAGTT---TGATA----A-TGCCA-A------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-C-AAC-CGG-AAGTTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATTT---GGCAAC-G--A-AG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAG-TAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-TA--TG-TG-T-T-G--TTGGGGCGATAAAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : CAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCA-TT--CA--CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CT
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : t--T-TAC-ACGCGC--TCTCATTGG-G-C-TA------------TT---GG---TATT--CT-CCAA-CT-CTT-TAGTTCACTGAAA-------ACCA-AAAAAAGTAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCG----AGC------AGCCT--TT---AGAC-A-GTTTAGACAGCGGGATTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-G-TAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-TA--TG-TG-TAT-GAATT-GGGC-ATAAAAT-G-GAGCAAACAAAAG-AAT--TAGA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----G--G-TAC-GT---C--T-TCATT-G-G-C-TA----CTTTTT--TT---GG---T-TTT-CA-GTGAACT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGCTA--TG---A----A-GTTAAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA-TG-TG-T-TTG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATCAAAA--TGTAGGTCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-G-C-C-CCAACAAACA-CAT-ACAAC-GTTTAGCGA-GA-C--C--CC--TTCTTTTA-CCTCCTA--A-GACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCT--CAAA--CTG-----AAT-GCT--TCGTTGCCCCA-GATTAAAAA--T-C-C-AC-TG-TCT-AAA-GTG-CTC--ATACTTCCGGTTTGCCG--ATTGTCTC---GA---GGT---ACGCCGATA----------GTCTAA--C-----GGTTTTA-C--ACGCG--CTCTCATT-GGCTA----TTG---------------GTA-TATCA--GACT------TTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGCGT--G--T-TAC-GCGCAA--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GGTGTT-TT--TA-GTGA-CT-GAA-GAG-T---TGATA----A-TACCA-A------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGTTA--TG---AG-C-ACATTTAGACA-T-GGAATTTT-AATCT--GGGCAAC-G--A-A----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G--GAGG-GGAGT--
gi|5 : tgGTGTCCGT-CTTTTGGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-----------------AACA-TATGACAAT-GTTCACCGG-AAAC--C--CC-CTTCTTGCA-CCTCCTA-TA-AACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTG-CCCA-GACTAAAAC--T-C-C-AC-TG-TCT-AAA-CGA-CT-A-AAACTTCCAGTTTGCCG--ATCG--TC---GC---GGT---GC------------------------------------TA-C--CTGCG--CTCTCATT-GGCTAACC-TTTT--T----T------G-GTTTTCACTGACTAAATAGCCN-N-N-NN-NNN--N-NNNNN------N-NNN--NNNNNNNNNNN----N--N-NNN-NNNNNN--NNNNNNN-N-N-N-NN--N-NNNNNN--NN---NN---N-NC--TA--TGA-CT-AAA-AAGTT---TGAGA----C-CACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAA--------------------------CA--CCGTCG--CGGT-G-ATCGG-CAAAC-CAA-AAGTT---TG---AG-T-C-GTTTATACAGT-GGA-TTTT-AGTCT--GGGC-AT-G--ACAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTTAAGG-G
gi|6 : TCCAT-CTTTTTTTTTGGATCGAA---TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAG-CAA-CTAACAAACA-CAT-ACATT-TTTTACCGG-AA-C--C--CC-CTTACTGTA-CCTCCTA-TA-GACTCC-TTACCTCAC-CCC------TCTGTA-CACTGACATTGACCCTC--AAA--TTG-----AAT---T--TCATTG-CCCA-GACTAAAAT--T-C-C-AC-CG-TCTTAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--ATTG--TC---GC---GGTGTTACGCCGATA----------GT------CTCAATGG-TTTA-C--ATTTG--CTCTCATT-GGCTA----TTGG--T----T---------TTCTCA--AACT------CTT-C-A-GT-CAC--T--AAAA------T-CCA--AAAAAGTTAGCCAATG--T-TAT-G---GC--TCTCATT-G-G-C-TA--A-CTATTT--TT---GG---T-TT--CA-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAA----------AAT-GTCTACCGGAAA-C--C--CC-CTTCTTGCA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-CAAA--TTGAATTTAAT-GCT--TCATTG-CCCA-GACTAAAAA--T-A-C-AC-TG-TCT-AAA-CAA-CTCA-TAACTTCCGGTTTGCCG--ATCG--TC---TC---G-----ACG---------------------------------------------G--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CACAAT-GAAa
gi|7 : -CTAACAAACA-CAT-ACAAT-GTCTACCGG-AA-C--C--CCCCTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTG-T----GACTAAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAG--T-T-C-AC-TG-TAT-AAA-CAA-TCCA-AATCTTCCGGTTTGCCG--ATCG--TC-----------------------------------------C-------------C--ACGCA--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CAC--T-GAAAA------C-CGAATAAAAAGATAGC----
gi|8 : AGT----G--T-TAC-GCACAC--TCTCATT-G-G-C-TA--T-CTTTTTATTC---GG---T-TTT-CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGATCGGCAAA--CCGcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|8 : agttcactgtataaacaatccaaatcttcGTGTCCAT-CTTTTTGG--GGATCGATT--TGTAGGTCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACGAT-GTTTATCGG-AA-C--C--CC-CATCGTGTA-CCCCCTA-TA-GACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--CAAA--TTG-----AAT-ACT--TTATTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TCT-AAA-CAA-CTCA-AAACTTCCGGTTTGCCG--CTTG--TC---GC---AGT---G------------------------------------TTA-C--GCACA--CTCTCATT-GGCTA----TC-T--T----T------TTATTC------GGT------TTT-C-A-GT-GAC--T-AAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCA--AACG-------TT-C-A-A---------GAAAAATATAAT-TAA--AAAAAGTTAGC----G--T-------GC-C--TCTCATT-G---C-TA--A-ACTTTT--TT---GG---T-TC-----GTGA-CT-TAA-AAGTTC--TGGGA----AATACCA-AA-----TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--CTA--TG---AA-CCA-GTT-ATACAGC-GGATTT---AAACT--GG-CAAC----A-AG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A-----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-TA--TG-T--T-T-G--TT-G--CGATAAA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222 22222222222222222222222222222222222222222222 3333333333333333333333333 1111111 11111111 111111111111111111111 1111 111111 1111 111111 222222222222222222222 11 11 11 11 222222222 111 1111 111 11 1111 11 1 1
lowQualScore : 3 2 44 44 3 44 3 3 3 3 3 444444 0 5 3 1 2 2 2 8 5 33 33 2 6 3 3 3 77777 111 44 77777 33 44 3 3 3 33 2 2 2 5 2 2 2 4 3 3 44 44 66666666666666666666666666666666666666666666 3 666 44 6 0000000000000000000000000 55 1111111 3 3 3 3 55 3 11111111 66 444444444444444444444 3 555 3 0000 44 999 999 3 444444 3 33 3 2222 777777 3 444444 0 3 4 4 4 333333333333333333333 1 2 88 55 4 4 4 55555 66 777 77 4 4 4 8 00 4 66 4 777 77 4 44 555 8 4 4 55 66 8 4 0 444444444 5 000 4 5 3 2222 777 5 5 33 5 5 5 5 77 5 0 1 5 5 77 0 5 1111 5 5 0 2 5 5 33 0 5 0 1 5 5 5
lowQualScore : . . .. .. . .. . . . . . ...... . . . . . . . . . .. .. . . . . . ..... ... .. ..... .. .. . . . .. . . . . . . . . . . .. .. ............................................ . ... .. . ......................... .. ....... . . . . .. . ........ .. ..................... . ... . .... .. ... ... . ...... . .. . .... ...... . ...... . . . . . ..................... . . .. .. . . . ..... .. ... .. . . . . .. . .. . ... .. . .. ... . . . .. .. . . . ......... . ... . . . .... ... . . .. . . . . .. . . . . . .. . . .... . . . . . . .. . . . . . . .
lowQualScore : 1 2 22 22 1 88 1 1 1 1 1 888888 1 7 6 4 9 9 9 6 7 99 99 9 7 1 1 1 77777 555 22 77777 55 22 7 1 1 77 9 9 9 7 9 9 9 4 1 1 22 22 99999999999999999999999999999999999999999999 1 777 22 2 2222222222222222222222222 00 6666666 6 6 6 6 00 6 99999999 99 555555555555555555555 3 999 3 1111 66 222 666 1 222222 1 66 3 3333 555555 6 111111 5 6 0 0 0 666666666666666666666 8 8 66 55 0 0 0 88888 11 888 33 4 4 4 9 66 4 11 4 888 99 4 66 333 9 4 4 00 11 9 4 1 333333333 7 000 3 7 0 0000 999 7 7 66 7 7 7 7 99 7 7 7 7 7 99 4 0 5555 0 0 4 5 0 0 88 0 0 0 4 0 0 0
consensus : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GG---TACG------G----TC------------TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GG---TACG------G----TC------------TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-TCTCCATTT--TAT-CGC-C-AACAA-CA-CAT-ACGAT-GTTTACCG--AA-CAGC--CC-ATT-TTGTA-C-TCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTG-CCCA--ATTAAAAAAAT-CAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAATTG--TCTCGGCCCGGG---TACGCATAA-G----TCCTAAACGCGTTATTTA-C--ACGCG--CTCTCATT-GGCTA----TGGTGAC----T---------TCCTCC--AACT------CTT-TTA-GT-CAC--TTGAAAA------C-CAA--AAAAAGTTAGC----A--------GTGCA---TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGT-T-TT--CAAGTGA-CT-AAA-GAGTT----GAGAGAAAA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATTTG---A--C-A-GTTTAGACAGC-GGATTTTT-AATCTTGAGGCAACTGATA-AG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-G-TAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-TAATTG-TGAT-T-G---T-GGGCGAT-AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : ---T-TT--CA-GTGA-CT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC--GG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--T-CAC-GCGCAC--TCTCATT-G-GGC-TA--A-CTTTTT--TTTTTGG---T-TTTTCA-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATCGAAA--T-TAGGTCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAGGCATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AA-C--C--CC-CTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC--AAA--TTA-----CAT-GCT--TCATTG-CCCAAGACTAAA----T-C-C-AC-TG-GC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCA--GACG--TC---GC---G-------G------G----TC---------------A-C--GCGCA--CTCTCATTGGGCTAAC--TTTT--T----T---------TTTT----GGTT------TTT-C-A-GT-GAC--T-AAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAG-CATTCTAACAAACA-CAT-ACAATTGTTTACCGG-AA-C--CACCC-TTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC---AA--TTG-----AA--GCT--TCATTA-CCCA-GACAAAAAA--T-C-C-ACTTG-TC-TAAA-CAA-C-CA-AAACTTCCGGTTTGCCG--ATCG--TC---CC---A-----ACG------G----T-------------TTTA-CAAACGCG--CTCTCATT-GGCTA----TTGT--t
gi|13 : TCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAG-CGT-TTAACA-----------AAT-GTTTA-----------------CTTCT----------TA-TG-TACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--CAAA--CTG-----AAT-GCT--TC------------CT--AAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCCGTTTGCCG--ATCG--TC---GC---GG---TG----------------------------TTA-C--GCGCG--CTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-CTA--TGGTGAG-C-A-GTTTTAAC-GC-GGATTTT---ATCTA-GGGCAAC-G--A-AGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTG-TAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGATA--TGCTG-T-T-G--TT---GCGGCTAAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACgtc
gi|15 : aCAT-CTTTTGGG--GGATCAAAA--TGTAGGTCAC-CGCTAT-------------TA-TTT--T-TCAT-TTTCCCTT-------CGT-TTT--------CAT-ACAAT-GTTCATTGG-AAAT--C--CC-CTTCTTGTA-CCCCCTG-TA-GACTCCCGTACC------CCC-----TCCATAACACTGACATTGAC-----------------------GCT--TCGTTG-CCCA-AATTGAAAA--T-C-C-AA-TG-TA-TAAA-Cc
gi|16 : TA-TA-GGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACC------------------------T--TCATTG-CCTA-AATCAAAAG----C-C-AC-CG-TC-TAAA-CGA-CTCA-AAACTTCCGTTTTAGCG--A-----TC---AC---GT---TATG--------------------------TTA-C--ACACA--CTCTCATT-GGCTA----TTaggac
gi|17 : ccgGC--T----T------GTTGTCATA--AACT------GTTGC-AAGTATAC--T-GAAAA------CGCAA--AAAATGTTAGC----G--T---------GC--TCTCATT-G-G-C-TATAA-CTTTTT--TTT--GG---T-TTT-CATGTGA-CTTAAATGAGTT-----GGA----A-TACCA-A------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgTGGT----G--TGTAC-GCGCGCACTCTCATT-G---C-TA--AACTTTTT--TT---GT---T-TT--CA--TAT-CT-AAA-GAGTT---TGAGA----A-
gi|18 : tagAAAAA--T-C-CCACATG-TC-TAAA-CAA-CTCA-AAAC-TCCGGTTTGCCG--ATT---TC---GT---GG---TGTG---------------------------TA-C--GCGCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TAT-CAC-CCAACAAACAACAT-ACAAT-GTTTAC--G-AA-C--C--CC-CTTTTTGTA-CCTC-TA-TA-GACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-CAAA--CTG-----AAA-GCT--TCGTTG-CCCA-AATTAAAAA--TTC-C-GC-TG-TC-TAAA-CTG-CTCATCAACTTTCGGTTTGCCG--ATTG--TCTCGGC---GG---TACGCC----GATATTCCCAACGG-----TTTAAC--ACGCG--CGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----GTTT-TACTGCGCAC--TCTCATT-GCG-T-TA--A-CTTTTT--TT---GG---T-TT--CA--TGA-CT--GA-GAGTT---TGATA----A-TGCCA-A------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-C-AAC-CGG-AAGTTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATTT---GGCAAC-G--A-AG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAG-TAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-TA--TG-TG-T-T-G--TTGGGGCGATAAAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : CAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCA-TT--CA--CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CT
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : t--T-TAC-ACGCGC--TCTCATTGG-G-C-TA------------TT---GG---TATT--CT-CCAA-CT-CTT-TAGTTCACTGAAA-------ACCA-AAAAAAGTAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCG----AGC------AGCCT--TT---AGAC-A-GTTTAGACAGCGGGATTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-G-TAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-TA--TG-TG-TAT-GAATT-GGGC-ATAAAAT-G-GAGCAAACAAAAG-AAT--TAGA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----G--G-TAC-GT---C--T-TCATT-G-G-C-TA----CTTTTT--TT---GG---T-TTT-CA-GTGAACT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGCTA--TG---A----A-GTTAAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA-TG-TG-T-TTG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATCAAAA--TGTAGGTCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-G-C-C-CCAACAAACA-CAT-ACAAC-GTTTAGCGA-GA-C--C--CC--TTCTTTTA-CCTCCTA--A-GACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCT--CAAA--CTG-----AAT-GCT--TCGTTGCCCCA-GATTAAAAA--T-C-C-AC-TG-TC-TAAA-GTG-CTC--ATACTTCCGGTTTGCCG--ATTGTCTC---GA---GG---TACGCCGATAG----TCTAACGGT-----TTTA-C--ACGCG--CTCTCATT-GGCTA----TTG---------------GTA-TATCA--GACT------TTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGCGT--G--T-TAC-GCGCAA--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GGTGTT-TT--TA-GTGA-CT-GAA-GAG-T---TGATA----A-TACCA-A------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGTTA--TG---AG-C-ACATTTAGACA-T-GGAATTTT-AATCT--GGGCAAC-G--A-A----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G--GAGG-GGAGT--
gi|5 : tgGTGTCCGT-CTTTTGGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-----------------AACA-TATGACAAT-GTTCACCGG-AAAC--C--CC-CTTCTTGCA-CCTCCTA-TA-AACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTG-CCCA-GACTAAAAC--T-C-C-AC-TG-TC-TAAA-CGA-CT-A-AAACTTCCAGTTTGCCG--ATCG--TC---GC---GG---TGC----------------------------TA-C--CTGCG--CTCTCATT-GGCTAACC-TTTT--T----T------G-GTTTTCACTGACTAAATAGCCN-N-N-NN-NNN--N-NNNNN------N-NNN--NNNNNNNNNNN----N--N-NNN-NNNNNN--NNNNNNN-N-N-N-NN--N-NNNNNN--NN---NN---N-NC--TA--TGA-CT-AAA-AAGTT---TGAGA----C-CACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAA--------------------------CA--CCGTCG--CGGT-G-ATCGG-CAAAC-CAA-AAGTT---TG---AG-T-C-GTTTATACAGT-GGA-TTTT-AGTCT--GGGC-AT-G--ACAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTTAAGG-G
gi|6 : TCCAT-CTTTTTTTTTGGATCGAA---TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAG-CAA-CTAACAAACA-CAT-ACATT-TTTTACCGG-AA-C--C--CC-CTTACTGTA-CCTCCTA-TA-GACT-CCTTACCTCA--CCCC-----TCTGT-ACACTGACATTGACCCT--CAAA--TTG-----AAT---T--TCATTG-CCCA-GACTAAAAT--T-C-C-AC-CG-TCTTAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--ATTG--TC---GC---GGTGTTACGCCGATAG----TCTCAATGG-----TTTA-C--ATTTG--CTCTCATT-GGCTA----TTGG--T----T---------TTCTCA--AACT------CTT-C-A-GT-CAC--T--AAAA------T-CCA--AAAAAGTTAGCCAATG--T-TAT-G---GC--TCTCATT-G-G-C-TA--A-CTATTT--TT---GG---T-TT--CA-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAA----------AAT-GTCTACCGGAAA-C--C--CC-CTTCTTGCA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-CAAA--TTGAATTTAAT-GCT--TCATTG-CCCA-GACTAAAAA--T-A-C-AC-TG-TC-TAAA-CAA-CTCA-TAACTTCCGGTTTGCCG--ATCG--TC---TC---G-----ACG-------------------------------------G--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CACAAT-GAAa
gi|7 : -CTAACAAACA-CAT-ACAAT-GTCTACCGG-AA-C--C--CCCCTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTG-T----GACTAAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAG--T-T-C-AC-TG-TA-TAAA-CAA-TCCA-AATCTTCCGGTTTGCCG--ATCG--TC-----------------------------C-----------------C--ACGCA--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CAC--T-GAAAA------C-CGAATAAAAAGATAGC----
gi|8 : AGT----G--T-TAC-GCACAC--TCTCATT-G-G-C-TA--T-CTTTTTATTC---GG---T-TTT-CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGATCGGCAAA--CCGcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|8 : agttcactgtataaacaatccaaatcttcGTGTCCAT-CTTTTTGG--GGATCGATT--TGTAGGTCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACGAT-GTTTATCGG-AA-C--C--CC-CATCGTGTA-CCCCCTA-TA-GACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--CAAA--TTG-----AAT-ACT--TTATTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--CTTG--TC---GC---AG---TG----------------------------TTA-C--GCACA--CTCTCATT-GGCTA----TC-T--T----T------TTATTC------GGT------TTT-C-A-GT-GAC--T-AAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCA--AACG-------TT-C-A-A---------GAAAAATATAAT-TAA--AAAAAGTTAGC----G--T-------GC-C--TCTCATT-G---C-TA--A-ACTTTT--TT---GG---T-TC-----GTGA-CT-TAA-AAGTTC--TGGGA----AATACCA-AA-----TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--CTA--TG---AA-CCA-GTT-ATACAGC-GGATTT---AAACT--GG-CAAC----A-AG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A-----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-TA--TG-T--T-T-G--TT-G--CGATAAA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222 22222222222222222222222222222222222222222222 3333333333333333333333333 1111111 11111111 111111111111111111111 1111 111111 1111 111111 222222222222222222222 11 11 11 11 222222222 111 1111 111 11 1111 11 1 1
lowQualScore : 3 2 44 44 3 44 3 3 3 3 3 444444 0 5 3 1 2 2 2 8 5 33 33 2 6 3 3 3 77777 111 44 77777 33 44 3 3 3 33 2 2 2 5 2 2 2 4 3 3 44 44 66666666666666666666666666666666666666666666 3 666 44 6 0000000000000000000000000 55 1111111 3 3 3 3 55 3 11111111 66 444444444444444444444 3 555 3 0000 44 999 999 3 444444 3 33 3 2222 777777 3 444444 0 3 4 4 4 333333333333333333333 1 2 88 55 4 4 4 55555 66 777 77 4 4 4 8 00 4 66 4 777 77 4 44 555 8 4 4 55 66 8 4 0 444444444 5 000 4 5 3 2222 777 5 5 33 5 5 5 5 77 5 0 1 5 5 77 0 5 1111 5 5 0 2 5 5 33 0 5 0 1 5 5 5
lowQualScore : . . .. .. . .. . . . . . ...... . . . . . . . . . .. .. . . . . . ..... ... .. ..... .. .. . . . .. . . . . . . . . . . .. .. ............................................ . ... .. . ......................... .. ....... . . . . .. . ........ .. ..................... . ... . .... .. ... ... . ...... . .. . .... ...... . ...... . . . . . ..................... . . .. .. . . . ..... .. ... .. . . . . .. . .. . ... .. . .. ... . . . .. .. . . . ......... . ... . . . .... ... . . .. . . . . .. . . . . . .. . . .... . . . . . . .. . . . . . . .
lowQualScore : 1 2 22 22 1 88 1 1 1 1 1 888888 1 7 6 4 9 9 9 6 7 99 99 9 7 1 1 1 77777 555 22 77777 55 22 7 1 1 77 9 9 9 7 9 9 9 4 1 1 22 22 99999999999999999999999999999999999999999999 1 777 22 2 2222222222222222222222222 00 6666666 6 6 6 6 00 6 99999999 99 555555555555555555555 3 999 3 1111 66 222 666 1 222222 1 66 3 3333 555555 6 111111 5 6 0 0 0 666666666666666666666 8 8 66 55 0 0 0 88888 11 888 33 4 4 4 9 66 4 11 4 888 99 4 66 333 9 4 4 00 11 9 4 1 333333333 7 000 3 7 0 0000 999 7 7 66 7 7 7 7 99 7 7 7 7 7 99 4 0 5555 0 0 4 5 0 0 88 0 0 0 4 0 0 0
consensus : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GG---TACG------G----TC------------TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GG---TACG------G----TC------------TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCACACGCTAT-AAAGAA-CTCTATA-TTTCTT-T-GT-TCTCCATTT--TAT-CGC-C-AACAA-CA-CAT-ACGAT-GTTTACCG--AA-CAGC--CC-ATT-TTGTA-C-TCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTG-CCCA--ATTAAAAAAAT-CAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGCCGCAATTG--TCTCGGCCCGGG---TACGCATAA-G----TCCTAAACGCGTTATTTA-C--ACGCG--CTCTCATT-GGCTA----TGGTGAC----T---------TCCTCC--AACT------CTT-TTA-GT-CAC--TTGAAAA------C-CAA--AAAAAGTTAGC----A--------GTGCA---TCTCATT-G-G-CATA--A-CTTTTT--TT---GAGT-T-TT--CAAGTGA-CT-AAA-GAGTT----GAGAGAAAA-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----T-AA-CCGCTATA----GGACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATTTG---A--C-A-GTTTAGACAGC-GGATTTTT-AATCTTGAGGCAACTGATA-AG---CA-TATAT-TTTGAGG--TC-A-T-GTCAAT-A-TTATAGA-AGGG--TGAAAG-G-TAAGG-AAGTT--TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-TAATTG-TGAT-T-G---T-GGGCGAT-AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : ---T-TT--CA-GTGA-CT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCC-AAAT-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC--GG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----G--T-CAC-GCGCAC--TCTCATT-G-GGC-TA--A-CTTTTT--TTTTTGG---T-TTTTCA-GTGA-CT-AAA-GAGTT---TGAG-----A-TAACGCA------TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATCGAAA--T-TAGGTCAC-AGCTATTGC-GAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAGGCATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AA-C--C--CC-CTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC--AAA--TTA-----CAT-GCT--TCATTG-CCCAAGACTAAA----T-C-C-AC-TG-GC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCA--GACG--TC---GC---G-------G------G----TC---------------A-C--GCGCA--CTCTCATTGGGCTAAC--TTTT--T----T---------TTTT----GGTT------TTT-C-A-GT-GAC--T-AAAGA------ccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-TA-AGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAG-CATTCTAACAAACA-CAT-ACAATTGTTTACCGG-AA-C--CACCC-TTTCTTGTAACCTCCTA-TA-GACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC---AA--TTG-----AA--GCT--TCATTA-CCCA-GACAAAAAA--T-C-C-ACTTG-TC-TAAA-CAA-C-CA-AAACTTCCGGTTTGCCG--ATCG--TC---CC---A-----ACG------G----T-------------TTTA-CAAACGCG--CTCTCATT-GGCTA----TTGT--t
gi|13 : TCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCAC-CACTAT-AA-GAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAG-CGT-TTAACA-----------AAT-GTTTA-----------------CTTCT----------TA-TG-TACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCT--CAAA--CTG-----AAT-GCT--TC------------CT--AAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCCGTTTGCCG--ATCG--TC---GC---GG---TG----------------------------TTA-C--GCGCG--CTCTCATT-GGCTA-----AGT--TCCGGT------GTATTattc
gi|14 : gttttgagtacaagtcataGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-CTA--TGGTGAG-C-A-GTTTTAAC-GC-GGATTTT---ATCTA-GGGCAAC-G--A-AGGAGCATTC--A-TTT-AGGGT-CAA-T---CAAT-AATTATAGA-GGGG--TG--AGTG-TAATG-GAA----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGATA--TGCTG-T-T-G--TT---GCGGCTAAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACgtc
gi|15 : aCAT-CTTTTGGG--GGATCAAAA--TGTAGGTCAC-CGCTAT-------------TA-TTT--T-TCAT-TTTCCCTT-------CGT-TTT--------CAT-ACAAT-GTTCATTGG-AAAT--C--CC-CTTCTTGTA-CCCCCTG-TA-GACTCCCGTACC------CCC-----TCCATAACACTGACATTGAC-----------------------GCT--TCGTTG-CCCA-AATTGAAAA--T-C-C-AA-TG-TA-TAAA-Cc
gi|16 : TA-TA-GGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACC------------------------T--TCATTG-CCTA-AATCAAAAG----C-C-AC-CG-TC-TAAA-CGA-CTCA-AAACTTCCGTTTTAGCG--A-----TC---AC---GT---TATG--------------------------TTA-C--ACACA--CTCTCATT-GGCTA----TTaggac
gi|17 : ccgGC--T----T------GTTGTCATA--AACT------GTTGC-AAGTATAC--T-GAAAA------CGCAA--AAAATGTTAGC----G--T---------GC--TCTCATT-G-G-C-TATAA-CTTTTT--TTT--GG---T-TTT-CATGTGA-CTTAAATGAGTT-----GGA----A-TACCA-A------TA-CC-AA-TGG-AGAGGGCGTG----TAAA-ACGT--TA----Gagta
gi|18 : gcgTGGT----G--TGTAC-GCGCGCACTCTCATT-G---C-TA--AACTTTTT--TT---GT---T-TT--CA--TAT-CT-AAA-GAGTT---TGAGA----A-
gi|18 : tagAAAAA--T-C-CCACATG-TC-TAAA-CAA-CTCA-AAAC-TCCGGTTTGCCG--ATT---TC---GT---GG---TGTG---------------------------TA-C--GCGCGCACTCTCATT--GCTAAACTTTTT--T----T------GTTTTCcgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AA-GAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TAT-CAC-CCAACAAACAACAT-ACAAT-GTTTAC--G-AA-C--C--CC-CTTTTTGTA-CCTC-TA-TA-GACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTC-CAAA--CTG-----AAA-GCT--TCGTTG-CCCA-AATTAAAAA--TTC-C-GC-TG-TC-TAAA-CTG-CTCATCAACTTTCGGTTTGCCG--ATTG--TCTCGGC---GG---TACGCC----GATATTCCCAACGG-----TTTAAC--ACGCG--CGCTCATTCGGCTA----TTGT--T----TCTTTTCGTATTATCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----GTTT-TACTGCGCAC--TCTCATT-GCG-T-TA--A-CTTTTT--TT---GG---T-TT--CA--TGA-CT--GA-GAGTT---TGATA----A-TGCCA-A------TAAGC-AA-T-GCAGAGCGCGTACTGTTAAA-CCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-C-AAC-CGG-AAGTTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATTT---GGCAAC-G--A-AG---CTTTCCAG-TTGGAGGGTTCAA---GTCAAT-A-GTACAGA-GGGG--TG--AGAG-TAAGG-GGAGT--TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-TA--TG-TG-T-T-G--TTGGGGCGATAAAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : CAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCA-TT--CA--CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CT
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : t--T-TAC-ACGCGC--TCTCATTGG-G-C-TA------------TT---GG---TATT--CT-CCAA-CT-CTT-TAGTTCACTGAAA-------ACCA-AAAAAAGTAGCC-AA-T-G---------------------------A----AGAC-------GTA--CCGCCG--AGAC-A-ATCG----AGC------AGCCT--TT---AGAC-A-GTTTAGACAGCGGGATTTTT-AATCT--GGGCAAC-G--A-AG---CATT-CAGTTTTGAGGGGTCAATT-GTCAATAA-TTATGGA-GGGG--TG--AG-G-TAAAGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-TA--TG-TG-TAT-GAATT-GGGC-ATAAAAT-G-GAGCAAACAAAAG-AAT--TAGA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----G--G-TAC-GT---C--T-TCATT-G-G-C-TA----CTTTTT--TT---GG---T-TTT-CA-GTGAACT-AAA-GAGTT---GGAGA----A-TACCA-A------TAGCCCAA-T-G-AGAGCGCGTG----TAAAACCGT--TA----GGACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGCTA--TG---A----A-GTTAAGACAGC-GGATTTTTTAATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGT-CAA-T-GTCAAT-A-TTATGGA-GGGGG-TG--AG-G-TAAGG-A-AGT---CTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA-TG-TG-T-TTG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATCAAAA--TGTAGGTCAC-CGCTG---A-AAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-G-C-C-CCAACAAACA-CAT-ACAAC-GTTTAGCGA-GA-C--C--CC--TTCTTTTA-CCTCCTA--A-GACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCT--CAAA--CTG-----AAT-GCT--TCGTTGCCCCA-GATTAAAAA--T-C-C-AC-TG-TC-TAAA-GTG-CTC--ATACTTCCGGTTTGCCG--ATTGTCTC---GA---GG---TACGCCGATAG----TCTAACGGT-----TTTA-C--ACGCG--CTCTCATT-GGCTA----TTG---------------GTA-TATCA--GACT------TTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGCGT--G--T-TAC-GCGCAA--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GGTGTT-TT--TA-GTGA-CT-GAA-GAG-T---TGATA----A-TACCA-A------TAGCC-AA-T-A-AGAGCGCGTG----TAAA-ACGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGTTA--TG---AG-C-ACATTTAGACA-T-GGAATTTT-AATCT--GGGCAAC-G--A-A----CATT-CAG-TTTGAGGG-TCAA-TAGTCAATCG-TTACAGA-GGGGTATG--AG-G--GAGG-GGAGT--
gi|5 : tgGTGTCCGT-CTTTTGGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-----------------AACA-TATGACAAT-GTTCACCGG-AAAC--C--CC-CTTCTTGCA-CCTCCTA-TA-AACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTG-CCCA-GACTAAAAC--T-C-C-AC-TG-TC-TAAA-CGA-CT-A-AAACTTCCAGTTTGCCG--ATCG--TC---GC---GG---TGC----------------------------TA-C--CTGCG--CTCTCATT-GGCTAACC-TTTT--T----T------G-GTTTTCACTGACTAAATAGCCN-N-N-NN-NNN--N-NNNNN------N-NNN--NNNNNNNNNNN----N--N-NNN-NNNNNN--NNNNNNN-N-N-N-NN--N-NNNNNN--NN---NN---N-NC--TA--TGA-CT-AAA-AAGTT---TGAGA----C-CACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAA--------------------------CA--CCGTCG--CGGT-G-ATCGG-CAAAC-CAA-AAGTT---TG---AG-T-C-GTTTATACAGT-GGA-TTTT-AGTCT--GGGC-AT-G--ACAG---CATT-CAG-TTTGAGGG-TCAA-T-GTCAGT-G-TTATAGAGGGGG--TG--AG-GTTAAGG-G
gi|6 : TCCAT-CTTTTTTTTTGGATCGAA---TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAG-CAA-CTAACAAACA-CAT-ACATT-TTTTACCGG-AA-C--C--CC-CTTACTGTA-CCTCCTA-TA-GACT-CCTTACCTCA--CCCC-----TCTGT-ACACTGACATTGACCCT--CAAA--TTG-----AAT---T--TCATTG-CCCA-GACTAAAAT--T-C-C-AC-CG-TCTTAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--ATTG--TC---GC---GGTGTTACGCCGATAG----TCTCAATGG-----TTTA-C--ATTTG--CTCTCATT-GGCTA----TTGG--T----T---------TTCTCA--AACT------CTT-C-A-GT-CAC--T--AAAA------T-CCA--AAAAAGTTAGCCAATG--T-TAT-G---GC--TCTCATT-G-G-C-TA--A-CTATTT--TT---GG---T-TT--CA-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAA----------AAT-GTCTACCGGAAA-C--C--CC-CTTCTTGCA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCC-C-CAAA--TTGAATTTAAT-GCT--TCATTG-CCCA-GACTAAAAA--T-A-C-AC-TG-TC-TAAA-CAA-CTCA-TAACTTCCGGTTTGCCG--ATCG--TC---TC---G-----ACG-------------------------------------G--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CACAAT-GAAa
gi|7 : -CTAACAAACA-CAT-ACAAT-GTCTACCGG-AA-C--C--CCCCTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCT--CAAA--CTG-----AAT-GCT--TCATTG-T----GACTAAAGA--gcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAG--T-T-C-AC-TG-TA-TAAA-CAA-TCCA-AATCTTCCGGTTTGCCG--ATCG--TC-----------------------------C-----------------C--ACGCA--CTCTCATT-GGCTA----TTG---------------GTATTCTCA--AACT------CTT-T-A-GT-CAC--T-GAAAA------C-CGAATAAAAAGATAGC----
gi|8 : AGT----G--T-TAC-GCACAC--TCTCATT-G-G-C-TA--T-CTTTTTATTC---GG---T-TTT-CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGTGCGTG---------------------GGACGATCGGCAAA--CCGcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|8 : agttcactgtataaacaatccaaatcttcGTGTCCAT-CTTTTTGG--GGATCGATT--TGTAGGTCAC-CGCTGT-TT-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACGAT-GTTTATCGG-AA-C--C--CC-CATCGTGTA-CCCCCTA-TA-GACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCT--CAAA--TTG-----AAT-ACT--TTATTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CAA-CTCA-AAACTTCCGGTTTGCCG--CTTG--TC---GC---AG---TG----------------------------TTA-C--GCACA--CTCTCATT-GGCTA----TC-T--T----T------TTATTC------GGT------TTT-C-A-GT-GAC--T-AAAGA------gcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacGC--T----T------GTATCATCA--AACG-------TT-C-A-A---------GAAAAATATAAT-TAA--AAAAAGTTAGC----G--T-------GC-C--TCTCATT-G---C-TA--A-ACTTTT--TT---GG---T-TC-----GTGA-CT-TAA-AAGTTC--TGGGA----AATACCA-AA-----TA-CC-AA-T-G-AG-GCGCGTT----TAA--CCGT--TA----G--CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--CTA--TG---AA-CCA-GTT-ATACAGC-GGATTT---AAACT--GG-CAAC----A-AG---CATTCCAG-TT-GAGAGTTCAA-T-TGCAAT-A-TTATGGA-GTAG--TA--A-----AA----------TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-TA--TG-T--T-T-G--TT-G--CGATAAA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
blockSeqs : T G TT AT . TG . A T A G CAGG G A A A G T A A . AC C A . . A ACCCA CC . AATTT T . A C A . T . C T . T . A . T . TC TCGGCGGTACGCCGATATTCCCAACGGTT A AAA CA G TTGTTTCTTTTCGTA CT AAATAGC G . A A AA . ATATAAT AT GTGTACGCGCGCAC G GG . TAA AT TTT TGT A TTCAG A TA T CACT AA C AAAAAG C A G C CTGTTAAACCGTTGGAAT T G G . . G . GCGG . GTG GA C C G T A . . C GAG CC T TT TT A A G TA . T T CAGACTCAT A AAA G A G GGTT CGA T A A C . A T AA G A G . CA . AG G . G T A GA G G C C C T A
blockSeqs : . T . . . T . . . . . TTCG T T A . . . A A . . . A . . . . CC . . T . A . . . . . . A . . . A . . . . GCGGTGTTACGCCGATAGTCTCAATGGTT . G . C AACTTTTTTTGTT . T . . . . . . CG . GTTTTACTGCGCAC . CG . AA . T . . TCATG . A . CT A . A . . . . TAAAACCGTTA T G . . . . . CCT . . G . . . T . . . . . CC . GT TA C . . G . A . GGAGTT . . G . G GGT . . . . . . . . . . T . . . . CG . . G . . . A . A C . . .
blockSeqs : . G . . . A . . . . . CAG . T A . . . A . . . . . . . . . C . . A . G . . . . . . . . . . G . . . . GAGGTACGCCGATAGTCTAACGGTTT . G . . AGTTCCGGTGTA . G . . . . . . C . GTGTTACGCGCAA . G . A . . . . TCAG . A . G A . . . . . . TAAAACCGTTA T C . . . . . CGG . . G . . . . . . . . . C . TT T . . . G . . . AAGT . . G . G GGT . . . . . . . . . . A . . . . AG . . G . . . . . . T . . .
blockSeqs : . T . . . A . . . . . TAG . T A . . . . . . . . . . . . . C . . T . A . . . . . . . . . . G . . . . CCAACGGTTT . A . . ACCTTTTTTGG . C . . . . . . C . CAATGTTATGGC . G . A . . . . TCAG . A . T A . . . . . . TAAAACGTTA T G . . . . . CGG . . G . . . . . . . . . C . T T . . . . . . . GAAT . . C . G GTG . . . . . . . . . . A . . . . AT . . G . . . . . . C . . .
blockSeqs : . T . . . A . . . . . CAG . G A . . . . . . . . . . . . . C . . T . G . . . . . . . . . . A . . . . ACGTTATGT . G . . ACTTTTTT . T . . . . . . N . GTCACGCGCAC . G . A . . . . CAG . C . T A . . . . . . TAAAACGTTA G A . . . . . CAA . . G . . . . . . . . . C . T T . . . . . . . AAGT . . G . . . . . . . . . . . . . A . . . . AG . . G . . . . . . G . . .
blockSeqs : . T . . . A . . . . . TAT . C A . . . . . . . . . . . . . C . . T . G . . . . . . . . . . T . . . . GTGGTGTG . A . . TCTTTTTA . C . . . . . . T . NNNNNNNNNNN . G . N . . . . CTC . A . T A . . . . . . TAACCGTTA T G . . . . . TGA . . G . . . . . . . . . C . T T . . . . . . . T . . . . . . . . . . . . . . . . A . . . . A . . . . . . . . . C . . .
blockSeqs : . T . . . A . . . . . CAG . G A . . . . . . . . . . . . . C . . T . A . . . . . . . . . . T . . . . GCGGGTC . A . . TTGGTA . C . . . . . . C . GTTACGCACAC . N . A . . . . TAG . G . G A . . . . . . TAA . G . . . . . GG . . A . . . . . . . . . C . T T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . G . . . A . . . . . CAG . C A . . . . . . . . . . . . . C . . T . A . . . . . . . . . . G . . . . GCGGTGT . C . . TTGGTT . C . . . . . . GGTACGTC . G . T . . . . CAG . A . T A . . . . . . A . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . .
blockSeqs : . T . . . A . . . . . CAG . T A . . . . . . . . . . . . . C . . T . A . . . . . . . . . . A . . . . GCGGTGC . A . . TTGGTA . T . . . . . . GTGCC . G . A . . . . CA . A . T C . . . . . . . . . . . . .
blockSeqs : . T . . . T . . . . . CA . T A . . . . . . . . . . . . . C . . . . A . . . . . . . . . . A . . . . GCAGTGT . A . . TTGGTA . . . . . . . . GTGC . . . . . . . . CA . T . T A . . . . .
blockSeqs : . G . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . A . . . . TCGACG . G . . . . . . . . . . TA . . . . .
blockSeqs : . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . C . . . . . . G .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ** C** ** T* ** ** ** GCGGTGT************************************* ATTGGTA****************** GTTACGCGCGC********** *** CAG*** T*** A***** TAAAACCGTTA********** ** ** CGG** ** G* ** ** C* ** GAGT***** *** ** AG** **
originalCons : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC-CAAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TC---GC---GG---TACG------G----TC------------TTTA-C--GCGCG--CTCTCATT-GGCTA----TTGT--T----T------GTATTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGC----G--T-TAC-GCGCGC--TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TT--CA-GTGA-CT-AAA-GAGTT---TGAGA----A-TACCA-A------TAGCC-AA-T-G-AGAGCGCGTG----TAAA-CCGT--TA----GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTCCAG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGG-GGAGT--TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
finalCons : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AA-GAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-TA-GACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC--AAA--CTG-----AAT-GCT--TCGTTG-CCCA-GACTAAAAA--T-C-C-AC-TG-TC-TAAA-CGA-CTCA-AAACTTCCGGTTTGCCG--ATCG--TCGCGGTGT-------------------------------------TA-C--GCGCG--CTCTCATT-GGCTAATTGGTA------------------TTCTCA--AACT------CTT-C-A-GT-CAC--T-GAAAA------C-CAA--AAAAAGTTAGCGTTACGCGCGC----------TCTCATT-G-G-C-TA--A-CTTTTT--TT---GG---T-TTCAG---TGA-CT-AAA-GAGTTT---GAGAA-----TACCA-A------TAGCC-AA-T-G-AGAGCGCGTGTAAAACCGTTA----------GGACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAACCGG--AAGCTA--TG---AG-C-A-GTTTAGACAGC-GGATTTTT-AATCT--GGGCAAC-G--A-AG---CATTC-AG-TTTGAGGGTTCAA-T-GTCAAT-A-TTATGGA-GGGG--TG--AG-G-TAAGGGAGT-----CTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-TA--TG-TG-T-T-G--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGAG--TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA
Alignments
lowQualScore : 1111 2222222222222222222 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222 111111111 11111111 2222222222222222 111 11111 111 111 2 1 1 22222 111 1111 1111 11
lowQualScore : 3 1 44 44 3 6 3 3 3 3 44 33 77 2 3 3 3 9 3 44 44 3 7 3 3 3 88888 0000 88888 3 44 5 6 44 3 3 3 6 3 3 3 4 3 3 3333333333333333333 44 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 555555555 333333333 6666 1 0 1 22222222 4 4 4 99 5 66 7777 5555555555555555 777 3 7777 55 000 3 555 77777 55 3 3 3 77 7777 3 4 4 1 4 4 4 4 777 2 1 66 9999 2 88 55 4 4 4 4 4 333 77 4 4 4 4 4 99 4 55 111 4 4 4 0 2 888 2 2 55 55 8 4 4 11111 5 888 2 5 1 888 555 5 5 5 66 1111 5 7777777 0 5 5 66 444 3333 4 4 1 4 4 22 8 4 8 0 4 4 4
lowQualScore : . . .. .. . . . . . . .. .. .. . . . . . . .. .. . . . . . ..... .... ..... . .. . . .. . . . . . . . . . . ................... .. .......................................................................................... . ......... ......... .... . . . ........ . . . .. . .. .... ................ ... . .... .. ... . ... ..... .. . . . .. .... . . . . . . . . ... . . .. .... . .. .. . . . . . ... .. . . . . . .. . .. ... . . . . . ... . . .. .. . . . ..... . ... . . . ... ... . . . .. .... . ....... . . . .. ... .... . . . . . .. . . . . . . .
lowQualScore : 3 1 66 66 3 7 3 3 3 3 66 88 99 0 1 1 1 2 1 22 22 1 3 3 3 3 33333 4444 33333 3 66 6 7 22 1 1 1 2 1 1 1 4 1 1 8888888888888888888 22 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 777777777 333333333 5555 3 9 0 88888888 0 0 0 55 0 99 1111 2222222222222222 444 6 4444 00 000 6 888 33333 88 3 3 6 99 7777 6 0 0 6 0 4 4 4 888 0 8 11 4444 0 66 55 0 0 0 0 4 999 33 4 0 0 0 0 55 0 55 000 0 0 0 7 7 888 0 0 55 55 0 0 0 77777 0 888 5 0 4 999 666 0 0 0 99 5555 0 9999999 4 0 0 99 888 6666 4 4 1 4 4 22 9 4 9 1 4 4 4
consensus : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC----AAACTG-----AA-TGCT--TCGTTGCCC-AGACT--AAAAAT-C-C-AC-T-GTC-T-AAACGA-CTCA-AAACTTCCGGTTTGC-------------------CG--ATCGTC---GCGGT------------------GT-T--AC--GC--------------------------GCG-----------------------CTCTCATT-GGCTA-A------TTG---------GTA---TTCTCAAACT------C-TT-CA-GT-CAC--TGAAAAC-CAA--AAAAAGTTAGC----GT--T--AC-GCGCGC--TCTCATTG-G-C-TA--A-CTTTTT--TT---G-GT---TT--C--A-GTGA-CT-AAA-GAGTT-TGAG----AA-TACCA-A-TAGCC-AA-T-G-AGAGCGCGT---GTAAAACCGT--TAG----GACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA---TGAG-C-A-GTTTAGACAGCGG-A-TTTT-TAATCT--GGGCAAC-G--A---AGCATT-C-AG-TTTGAGGG-TCAA-T-GTCAAT-ATTATGGA-GGGG--TG--AG-G-TAA-GGGAG-----TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TG-T-TG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
Reference ( family-6925 ) : GTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACAAT-GTTTACCGG-AA-C--C--CC-CTTCTTGTA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC----AAACTG-----AA-TGCT--TCGTTGCCC-AGACT--AAAAAT-C-C-AC-T-GTC-T-AAACGA-CTCA-AAACTTCCGGTTTGC-------------------CG--ATCGTC---GCGGT------------------GT-T--AC--GC--------------------------GCG-----------------------CTCTCATT-GGCTA-A------TTG---------GTA---TTCTCAAACT------C-TT-CA-GT-CAC--TGAAAAC-CAA--AAAAAGTTAGC----GT--T--AC-GCGCGC--TCTCATTG-G-C-TA--A-CTTTTT--TT---G-GT---TT--C--A-GTGA-CT-AAA-GAGTT-TGAG----AA-TACCA-A-TAGCC-AA-T-G-AGAGCGCGT---GTAAAACCGT--TAG----GACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGCTA---TGAG-C-A-GTTTAGACAGCGG-A-TTTT-TAATCT--GGGCAAC-G--A---AGCATT-C-AG-TTTGAGGGTTCAA-T-GTCAAT-ATTATGGA-GGGG--TG--AG-G-TAA-GGGAG-----TCTAT-AG---GAGGTACAA-GAAGGGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TG-T-TG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TG-GAGAC
gi|1 : GTCTCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCACACGCTATAAAGAA-CTCTATA-TTTC-T-TTGT-TCTCCATTT--TAT-CG--CCAAC-AACA-CAT-ACGAT-GTTTACC-G-AA-CAGC--CC-ATT-TTGTA--CTCCTAGTAAGACTCC--TACCTCAC-CCTC--------ATAATATTGACATTGACCCTCACAAAAACTG-----AATTGCTGCTCGTTGCCC-A-ATTAAAAAAAT-CAC-GC-TGGTC-TAAAACTAGCTCA-TAGCTTCCGGTTTGC-------------------CGCAATTGTC---TCGGCCCG---------------GG-T--AC--GCATAAGTCCTAAACGCGTTATTTACACGCG-----------------------CTCTCATT-GGCTA---------TG---------GTGACTTCCTCCAACT------CTTT-TA-GT-CACT-TGAAAAC-CAA--AAAAAGTTAGC----A---------GTGCA---TCTCATTG-G-CATA--A-CTTTTT--TT---GAGT---TT--TCAA-GTGA-CT-AAA-GAG-T-TGAGAGAAAA-TACCA-A-TAGCC-AA-T-G-AGAGCGCGT---GT--AACCGCTATAG----GACTATCGGC-TACCCCGCCGCAAGACAA-ATCGGCCAAAC-CGGAAAGCTATT-TGA--C-A-GTTTAGACAGCGG-A-TTTT-TAATCTTGAGGCAACTGATA---AGCATA-T-AT-TTTGAGG--TC-A-T-GTCAAT-ATTATAGA-AGGG--TGAAAG-G-TAA-GGAAGTT---TCTAT-AG---GA-GTACAA-AGAAGGGG-TTTCCGGTAAACAA-A-TCG-T-AATTG-TGAT-TG---T-GGGCGAT-AAAT-GAGAG--AACAAAAGAAATATTAGAAGATT-CTATATAGCGGTGA-C-CTAAAC-AT-TTTG-ATCCCAAAA-AGAA-TG-GAG
gi|10 : T---TT--C--A-GTGA-CT-AAA-GAGTT-GGAG----AA-TACCA-A-TAGCC-AAAT-G-AGAGCGCGT---GTAAAACCGT--TAG----GACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAA--CGG-AAGCTA---TGAG-C-A-GTTTAGACAGCGG-ATTTTT-TAATCT--GGGCAAC-G--A---AGCATT-C-AG-TTTGAGGG-TCAA-T-GTCAAT-ATTATGGAGGGGG--TG--AG-G-TAA-GGAAG-----TCTAT-AG---GAGGTACAA-GA--GGGG-TTTCCGGTAAAC---A-TCG-T-A--TG-TG-T-TG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA---TT-CT-TATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCAAAA-AAGA-TGAGAGAc
gi|11 : t----GT--C--AC-GCGCAC--TCTCATTG-GGC-TA--A-CTTTTT--TTTTTG-GT---TTTTC--A-GTGA-CT-AAA-GAGTT-TGAG-----A-TAACGCA-TAGCC-
gi|11 : gCCAT-CTTTTT-G--GGATCGAAA--T-TAGGTCAC-AGCTATTGCGAA-GTCGATA-TTTCTTATTAT-TCTCCATTT--CAGGCATGCAAACAAACA-CAT-ACAAT-GT--ACCGA-AA-C--C--CC-CTTCTTGTAACCTCCTA-T-AGACTCCCTTACCTCAC-CC-------TCTATAACACTGACATTGACCCTC----AAATTA-----CA-TGCT--TCATTGCCCAAGACT----AAAT-C-C-AC-T-GGC-T-AAACAA-CTCA-AAACTTCCGGTTTGC-------------------CA--GACGTC---GCGG-------------------GT-C--AC--GC--------------------------GCA-----------------------CTCTCATTGGGCTA-A------CTT---------TT----TTTTTTGGTT------T-TT-CA-GT-GAC--TAAAGAccgcgacgtctggcaaaccggaagttttgagttgtttagccagtggatttagtcttgggcaatgaagcatgtaatttgagggtcaatgtcagtgttatagagggtgaggtaagggagtctataggaggttacaagaagggggtttcggtacattgtatgtgtttgtttgcatgcctgaaatggagaataataagaaatatcgacttcgcaatagctgtgacctaatttcgatcccaaaaagatggt
gi|12 : gggctatgcgttatctcaaacGTGTCCATTCTTTTTGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-TAAGA-CTCGA-A-TTTTTT-TGAT-TCTCCATTT--CAG-CATTCTAACAAACA-CAT-ACAATTGTTTACCGG-AA-C--CACCC-TTTCTTGTAACCTCCTA-T-AGACTCCCTTACCTCAC-TCCT-----TCTGTAACACTGACATTGA-CCTC-----AATTG-----AA--GCT--TCATTACCC-AGACA--AAAAAT-C-C-ACTT-GTC-T-AAACAA-C-CA-AAACTTCCGGTTTGC-------------------CG--ATCGTCCCAACGGT------------------TT-T--ACAAAC--------------------------GCG-----------------------CTCTCATT-GGCT--A------TT----------GTA---TTCt
gi|13 : TCCAT-CTTTTTTG--GGATCAAAA--TGTAGGTCAC-CACTAT-AAGAA-TTCTATATTTTCTT-TTA---CTCCATTT--TAG-CGT-TTAACA-----------AAT-GTTTA-----------------CTTCT----------TA-T-GTACTCCCTTTCCTCA--TCCG-----TCCAAATTACTGACATTGATCCTC----AAACTG-----AA-TGCT--TC-----------CT----AAAT-C-C-AC-T-GTC-T-AAACGA-CTCA-AAACTTCCCGTTTGC-------------------CG--ATCGTC---GCGGT------------------GT-T--AC--GC--------------------------GCG-----------------------CTCTCATT-GGCTA-A------
gi|14 : gttttgagtacaagtcataaatacaccggaacGCGTA--CCGCCG--AGAC-AGATCGG-TAAAC-CCT-AA-CTATGGTGAG-C-A-GTTTTAAC-GCGG-A-TTTT---ATCTA-GGGCAAC-G--AAGGAGCATT-C-A--TTT-AGGG-TCAA----TCAATAATTATAGA-GGGG--TG--AGTG-TAA-TGGAA-----TCTATAAG---GAGGGACAA-GAAGGG----TTCCGG-AAAC---A-TCGAT-A--TGCTG-T-TG--TT---GCGGCTAAAT-G-GAG---AC--AAGAATTA-T-GA--GTT-CT-TATTGCGGT-A-C-CT--AC-ATGTTTG-AT-CCAAAC-AAGA-TG-AAGACgtc
gi|15 : a-GTTTATACATTGG-A-TTTT-CAATTT--GGGCAAC-G--A---AGCG-----------------TCAA-T-GTCAGT-GTTATGGA-GGG--------G-G-TAC-GGGAG-----TCTAC-AG---GGGGTACAA-GAAGGGGA-TTTCCAATGAAC---A-TTG-T-A--TG--------------------AAAAC-G-AAG--GGAAAATGAAAAA-TA------------ATAGCGGTGA-C-CT--AC-AT-TTTG-ATCCCCCAA-AAGA-TG-AGGACc
gi|16 : TA-T-AGGTTCCCTTACCTCACACCCCACCCACCCATAACCTTG-CATTGACCTTC----A----------------------TTGCCT-AAATC--AAAAG--C-C-AC-C-GTC-T-AAACGA-CTCA-AAACTTCCGTTTTAG-------------------CG--ATCA-C---GTTAT------------------GT-T--AC--AC--------------------------ACA-----------------------CTCTCATT-GGCT--A------TTA---------GTA---
gi|17 : ccg-GGCTT-G------TTG---------TCA---T----AAACT------G-TTGCAAGTATAC--TGAAAACGCAA--AAAATGTTAGC----GT------------GC--TCTCATTG-G-C-TATAA-CTTTTT--TTT--G-GT---TTT-C--ATGTGA-CTTAAATGAGTT---GG----AA-TACCA-A-TA-CC-AA-TGG-AGAGGGCGT---GTAAAA-CGT--TAG----
gi|18 : gcTGGT----GTG-T--AC-GCGCGCACTCTCATTG---C-TA--AACTTTTT--TT---G-TT---TT--C--A--TAT-CT-AAA-GAGTT-TGAG----AA-
gi|18 : tag--AAAAAT-C-CCACAT-GTC-T-AAACAA-CTCA-AAAC-TCCGGTTTGC-------------------CG--ATT-TC---GTGGT------------------GTGT--AC--GC--------------------------GCGCA---------------------CTCTCATT--GCTA-A------cgaaatcggcaaaccggagttttgagttgtttagacatgtgggattttttc
gi|19 : tagttctcaaactctttagatatgaaaacaaaaaaagtGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CTTCtc
gi|2 : GTCTCCAT-CTTTTTTG--GGATCCAAAATTGTAGGTCAC-CGCTGT-AAGAAACGCTATA-TTTCTT-TTGTGTCTC-ATTT--TAT-CAC-CCAACAAACAACAT-ACAAT-GTTTAC--G-AA-C--C--CC-CTTTTTGTA-CCTC-TA-T-AGACTCCCTTACCTCAC-CCCC-----TCTGTACTATTGACATTTACCCTCC---AAACTG-----AA-AGCT--TCGTTGCCC-AAATT--AAAAATTC-C-GC-T-GTC-T-AAACTG-CTCATCAACTTTCGGTTTGC-------------------CG--ATTGTCTCGGCGGTACGCCGATATTCCCAACGGT-TTAAC--AC--------------------------GCG-----------------------CGCTCATTCGGCTA--------TTGTTTCTTTTCGTA---TTATCAAACT------C-TT-CA-GT-CAC--TGAAAAC-CAA--AAAAAGTTAGC----GT--TTTACTGCGCAC--TCTCATTGCG-T-TA--A-CTTTTT--TT---G-GT---TT--C--A--TGA-CT-GA--GAGTT-TGAT----AA-TGCCA-A-TAAGC-AA-T-GCAGAGCGCGTACTGTTAAACCGT--TGGAATGGACTATCGCCGTA--CCGCCG--AGAC-A-ATCGG-CAA-C-CGG-AAGTTA---TGAG-C-A-GTTTAGACAGCGG-A-TTTT-TAATTT---GGCAAC-G--A---AGCTTTCC-AG-TTGGAGGGTTCAA---GTCAAT-AGTACAGA-GGGG--TG--AGAG-TAAGGGGAGT----TCTAT-AA---GAGTTACAA-GAAGGGGGTTTTCCGGTAAAC---ATTTG-T-A--TG-TG-T-TG--TTGGGGCGATAAAATGG-GAG--AACAAAAAGAAAA-TAGC--GTTGCT-TACAGCGGTGA-CACT--ACGAT-TTTGCATCCCAAAACAAGA-TG-GAGGC
gi|20 : CAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CG---T-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCA-TT--CA--CAT-CGAACAAACA-CAT-ACAAT-G-TTACCGGAAA-C--C--CC-CT
gi|21 : tAAAGAAATG-TGGA--GTT-CT-TATAGCGATGA-C-CT--AC-AT-TTTG-ATTCCAAAA-AAGA-TG-GAGA
gi|25 : CGGCGGA--CCGCCG--AGAC-A-ATCGG-CAAAC-CG
gi|3 : tGACGTA--CCGCCG--AGAC-A-ATCG----AGC------AGCCT---TTAGAC-A-GTTTAGACAGCGGGA-TTTT-TAATCT--GGGCAAC-G--A---AGCATT-C-AGTTTTGAGGGGTCAATT-GTCAATAATTATGGA-GGGG--TG--AG-G-TAA-AGCAGACTCATCTAT-AGAAAGACGTACAA-GAA-GGGG-TTTCC-GTAAACCGAG-TCG-T-A--TG-TG-TATGAATT-GGGC-ATAAAAT-G-GAGCAAACAAAAG-AAT--TAGA--TTC-TT-TATAGCGGTGATC-CTGAACAAT-CTTGAATCCCAAAA-AAGATTG-GAGAC
gi|3 : GC----GG--T--AC-GT---C--T-TCATTG-G-C-TA----CTTTTT--TT---G-GT---TTT-C--A-GTGAACT-AAA-GAGTT-GGAG----AA-TACCA-A-TAGCCCAA-T-G-AGAGCGCGT---GTAAAACCGT--TAG----GACTATCGACGTAG-CCGCCG--AGAC-A-ATCG--CAAACGCGG-AAGCTA---TGA----A-GTTAAGACAGCGG-A-TTTTTTAATCT--GGGCAAC-G--A---AGCATT-C-AG-TTTGAGGG-TCAA-T-GTCAAT-ATTATGGAGGGGG--TG--AG-G-TAA-GGAAG-----TCTAT-AG---GAGGTACAA-GAAGGGGT-GTTCCGGTAAAC---A-TCG-TAA--TG-TGTT-TG--TT-GGGCGATAAAAT-G-GAG--AACAAAAGAAATA-TAGA--GTT-CT-TAT-GCGGTGA-C-CT--AC-AT-TTTG-ATGCCAAAA-AAGA-TG-GAGACttcattggctactttttttggttttcagtgaactaaagagttggagaataccaatagcccaatgagagcgcgtgtaaaaccgttaggactatcgacgtagccgccgagacaatcgcaaacgcggaagctatgaagttaagacagcggattttttaatctgggcaacgaagcattcagtttgagggtcaatgtcaatattatggagggggtgaggtaaggaagtctataggaggtacaagaaggggtgttccggtaaacatcgtaatgtgtttgttgggcgataaaatggagaacaaaagaaatatagagttcttatgcggtgacctacattttgatgccaaaaaagatggagac
gi|4 : gtctccaatcttttttgggattcaagattgttcaggatcaccgctataaagaatctaattcttttgtttgctccattttatgcccaattcatacacatacgactcggtttacggaaaccccttcttgtacgtctttctatagatgagtctgctttacctcacccctccataattattgacaattgacccctcaaaactgaatgcttcgttgcccagattaaaaatcccgctgtctaaactgtctaaaggctgctcgattgtctcgGTCTCCAT-CTTTTTTG--G-ATCAAAA--TGTAGGTCAC-CGCTG---AAAA-CTCTATA-TTTCTT-TTGT-TCTCCATTTTTC-G-C-C-CCAACAAACA-CAT-ACAAC-GTTTAGCGA-GA-C--C--CC--TTCTTTTA-CCTCCTA---AGACTCCCTTACCTCAC-CCCC-----TCTGTAACATTGACAATGACCCTC----AAACTG-----AA-TGCT--TCGTTGCCCCAGATT--AAAAAT-C-C-AC-T-GTC-T-AAAGTG-CTCA-TA-CTTCCGGTTTGCCGATTGTCTCGAGGTACGCCG--ATAGTCTA-ACGGT------------------TT-T--AC--AC--------------------------GCG-----------------------CTCTCATT-GGCTA--------TTG---------GTA---T-ATCAGACT------T-TT-CA-GT-CAC--TGAAAAC-CAA--AAAAAGTTAGC----GTGTT--AC-GCGCAA--TCTCATTG-G-C-TA--A-CTTTTT--TT---G-GTGTTTT--T--A-GTGA-CT-GAA-GAGTT--GAT----AA-TACCA-A-TAGCC-AA-T-A-AGAGCGCGT---GTAAAAC-GT--TAG----GACTATCGGCGTA--CCGCCG--AGAC-A-ATCGG-CAAAC-CGG-AAGTTA---TGAG-C-ACATTTAGACA-TGG-A-ATTT-TAATCT--GGGCAAC-G--A---A-CATT-C-AG-TTTGAGGG-TCAA-TAGTCAATCGTTACAGA-GGGGTATG--AG-G-GAG-GGGAG-----TC
gi|5 : tGTGTCCGT-CTTTTGGG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTTGATA-TTTCTT-TTAT-TCTCCATT-----------------AACA-TATGACAAT-GTTCACCGG-AAAC--C--CC-CTTCTTGCA-CCTCCTA-T-AAACTCCCTTACCTCAC-CCCC-----TCTATAACACTGACATTGACCCTC----AAACTG-----AA-TGCT--TCATTGCCC-AGACT--AAAACT-C-C-AC-T-GTC-T-AAACGA-CT-A-AAACTTCCAGTTTGC-------------------CG--ATCGTC---GCGGT------------------GC-T--AC--CT--------------------------GCG-----------------------CTCTCATT-GGCTA-ACCTTTTTTG---------GTT---TTCACTGACTAAATAGC-CN-NN-NN-NNN--NNNNNNN-NNN--NNNNNNNNNNN----NN--N--NN-NNNNNN--NNNNNNNN-N-N-NN--N-NNNNNN--NN---N-NN---NC--T--A--TGA-CT-AAA-AAGTT-TGAG----AC-CACCA-A-TAGCC-AA-T-G-AGAGCGCGT---GTAACACCGT-------------------------CGC-----GGT-G-ATCGG-CAAAC-CAA-AAGTT----TGAG-T-C-GTTTATACAGTGG-A--TTT-TAGTCT--GGGC-AT-G--AC--AGCATT-C-AG-TTTGAGGG-TCAA-T-GTCAGT-GTTATAGAGGGGG--TG--AG-GTTAA-GGG
gi|6 : TCCAT-CTTTTTTTTTGGATCGAA---TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTC-ATTT--CAG-CAA-CTAACAAACA-CAT-ACATT-TTTTACCGG-AA-C--C--CC-CTTACTGTA-CCTCCTA-T-AGACT-CCTTACCTCA--CCCC-----TCTGT-ACACTGACATTGACCCTC----AAATTG-----AA-T--T--TCATTGCCC-AGACT--AAAATT-C-C-AC-C-GTCTT-AAACAA-CTCA-AAACTTCCGGTTTGC-------------------CG--ATTGTC---GCGGT------------------GT-T--AC--GC---------------------------CGATAGTCTCAATGGTTTACATTTGCTCTCATT-GGCT--A------TTG---------GTT---TTCTCAAACT------C-TT-CA-GT-CAC--T-AAAAT-CCA--AAAAAGTTAGCCAATGT--T--AT-G---GC--TCTCATTG-G-C-TA--A-CTATTT--TT---G-GT---TT--C--A-GTGA-CT-
gi|7 : tattgatttttttgcaaaacaaaGTGTCCAT-CTTTTTTG--GGATCGAAA--TGTAGGTCAC-CGCTAT-AAGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAA----------AAT-GTCTACCGGAAA-C--C--CC-CTTCTTGCA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TTTATAACACTGATATTGACCCCC----AAATTGAATTTAA-TGCT--TCATTGCCC-AGACT--AAAAAT-A-C-AC-T-GTC-T-AAACAA-CTCA-TAACTTCCGGTTTGC-------------------CG--ATCGTC---TCG--------------------------AC--G-----------------------------G-----------------------CTCTCATT-GGCT--A------TTG---------GTA---TTCTCAAACT------C-TT-TA-GT-CACAATGAAa
gi|7 : -CTAACAAACA-CAT-ACAAT-GTCTACCGG-AA-C--C--CCCCTTCTTGTA-CCTCCTA-T-AGACTCCCTTACCTCAC-CCCC-----TTTATAACACTGACATTGACCCTC----AAACTG-----AA-TGCT--TCATTGT----GACT--AAAGAgcattcagtttgagggtcaatgtcagtgttataaagggggtgaggtaagggagtctataggaggtacaagaaggggggttccggtagacattgtatgtgtttgttag
gi|8 : gtgtccatcttttttgggatcgaaatgtaggtcaccgctataagaactcgatatttcttttattctccatttcagcatctaacaaaatgtctaccggaaacccccttcttgcacctcctatagactcccttacctcaccccctttataacactgatattgacccccaaattgaatttaatgcttcattgcccagactaaaaatacactgtctaaacaactcataacttccggtttgccgatcgtctcgacggctctcattggctattggtattctcaaacAGT-T-C-AC-T-GTA-T-AAACAA-TCCA-AATCTTCCGGTTTGC-------------------CG--ATCGTC----C----------------------------C--AC--------------------------GCA-----------------------CTCTCATT-GGCTA--------TTG---------GTA---TTCTCAAACT------C-TT-TA-GT-CAC--TGAAAAC-CGAATAAAAAGATAGC----
gi|8 : AGT----GT--T--AC-GCACAC--TCTCATTG-G-C-TA--T-CTTTTTATTC---G-GT---TTT-C--A-GTGA-CT-AAA-GAGTT-TGAG----AA-TACCA-A-TAGCC-AA-T-G-AGAGTGCGT---G-------------G----GACGATCGGCAAA--CCGcaatgagagtgtgcgtaacactgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|8 : agttcactgtataaacaatccaaatcttcGTGTCCAT-CTTTTTGG--GGATCGATT--TGTAGGTCAC-CGCTGT-TTGAA-CTCGATA-TTTCTT-TTAT-TCTCCATTT--CAG-CAT-CTAACAAACA-CAT-ACGAT-GTTTATCGG-AA-C--C--CC-CATCGTGTA-CCCCCTA-T-AGACTCCCCTACCTCAC-CCCC-----TCTATAACATTG-CATTGACCCTC----AAATTG-----AA-TACT--TTATTGCCC-AGACT--AAAAAT-C-C-AC-T-GTC-T-AAACAA-CTCA-AAACTTCCGGTTTGC-------------------CG--CTTGTC---GCAGT------------------GT-T--AC--GC--------------------------ACA-----------------------CTCTCATT-GGCTATC------TTT---------TTA---TTC----GGT------T-TT-CA-GT-GAC--TAAAGAgcgacaagcggcaaaccggaagttttgagttgtttagacagtggatttttagtctgggcaataaagtattcaatttgagggtcaatgcaatgttatagagggggtgaggtaggggagtctatagggggtacacgatgggggttccgataaacatcgtatgtgtttgttagatgctgaaatggagaataaaagaaatatcgagttcaaacagcggtgacctacaaatcgatccccaaaaagatggacacc
gi|9 : agttcactgtataaacaatccaaatcttccggtttgccgatcgtcccacgcactctcattggctattggtattctcaaacAAT-TAA--AAAAAGTTAGC----GT----------GC-C--TCTCATTG---C-TA--A-ACTTTT--TT---G-GT---TC-------GTGA-CT-TAA-AAGTTCTGGG----AAATACCA-AATA-CC-AA-T-G-AG-GCGCGT---TTAA--CCGT--TAG------CTATCG-CGTA--CCGCCG--AGAC-A-ACGGG-CAAAC-TGA-A--CTA---TGAA-CCA-GTT-ATACAGCGG-A-TTT---AAACT--GG-CAAC----A---AGCATT-CCAG-TT-GAGAGTTCAA-T-TGCAAT-ATTATGGA-GTAG--TA--A-----------AA-----TCTAT-AG---A---TACAAAGAAGTG----TTCCG-TA--C---A-TCG-T-A--TG-T--T-TG--TT-G--CGATAAA-T-G-GA---AACAAAAGAAA-A-TAA-----T-CT-TGTATC--T-A-C-CT--AC-AT-TTTT-ATCCCAAAA-AAGA-TC-GAGACc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): CTTGTTTCAATAAACTTTGCCAAAGTATGATACTATATAATAA
Unaligned ( gi|23 ): CATAGACGTCGCAAACTAAGCTATACAACAATACAAG
Unaligned ( gi|24 ): TCCTTAAACGTGGCATAGTATGCTGTATAACAACTCA