lowQualScore : 222222 55555555555555555555555555555555555555555555555555555555555555555 11 1 1111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111 1111111 5555555555555555555555555555555 1111111 2222 11 11111 444444444444 11111 111111 11
lowQualScore : 66 33 2 777777 4 2 6666 7 2 2 99999999999999999999999999999999999999999999999999999999999999999 77777 44 3 44 8888 99 6 6 3333 2 1 0 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 3 444444 1111111 0 666 55 44 55 3 6666666666666666666666666666666 4444444 3 3 1111 333 0 33 4 00000 33 555 5 2 222222222222 1 22222 33 44 3 666666 66
lowQualScore : .. .. . ...... . . .... . . . ................................................................. ..... .. . .. .... .. . . .... . . . . .......................................................................................... . . ...... ....... . ... .. .. .. . ............................... ....... . . .... ... . .. . ..... .. ... . . ............ . ..... .. .. . ...... ..
lowQualScore : 00 99 9 000000 4 2 9999 9 2 2 22222222222222222222222222222222222222222222222222222222222222222 77777 22 1 22 9999 44 6 2 9999 9 8 8 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 6 111111 6666666 5 444 00 66 00 6 1111111111111111111111111111111 7777777 6 6 4444 888 2 77 3 44444 44 777 0 5 777777777777 0 33333 99 22 1 111111 22
consensus : GGGCTCTCACAC--CAC-TTTTT---GGGAAT-G-GGGCC----GGGGCCG-TTCA-AA-T--TGGGAAAATT-A-C---CG----T-TAT-NT-NGGNG-AA-AATT--G--G-------A--AA-----AA--C-AAC--ATTC--AC-NAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTTGTTTTCAATTT----A-------TTTA-G---------GTTT-----TGGA------TA-CA--CA--------T-A--AC------------A------CGGTAAGT-TT------ATTTT----AAATATCCAAA---AAT--CTGT--CCT--TAATGTTCA-TGAAATGC---TCT-------AANATTTTTC--GNTAAGGGAAATTG------G-G-AAAATTCN-ACTTT-TAAATT-GGGAAAAAA---AAG--GT-A-C-CTT-TTT---C--A--T--TGGGAACGGGGCCGTTCAA--CGGCCCC--ATT-T----ATAGAGAATC-GAGAGCCCTG
Reference ( gi|1 ) : GGGCTCTTGCAC--CAC-TTGTA---GGGAAT-G-GGGCC----GGGGCTG-TTCA-AA-TGGTGGGAAAATT-A-T---TA----T-TAT-AT-AGGTG-AA-AATT--G--A-------A--AA-----AA--C-AAC--ATCC--AC-TAAATA-CTC-GTCAAAT-TTTGCTTTTCTATTGTTTTGTTTTCAATTT----A-------TTTAGG---------GTTT-----TGGA------TA-CA--CA--------T-A--AC------------A------CAGTAAAT-TT------ATTTT----AAGTATCCAAA---AAT--CTGT--CCT--TAATGTTCA-TGAAATGC---TGT-------AATATTTTTC--ATTAAGGGAAATTA------G-G-AAAATTCA-AGTTT-TAAATT-AGGAAAAAA---AAG--GT-A-C-TTT-TTT---C--A--TA-TGGGAACGGGGCCCTTTAA--CGGCCCC--ATT-T----AGAGAGAATG-GAGAGCCCTGC
gi|4 : GGGCTCTCGCAC--CAC-ATTT---------T-G-GGGCA----GGGGCCG-ATCA-GA-T--TGGGAAAATTCG-G---CA----T-T----T-GGGGG-AA-AATT--GGGA-------A--AA-----AA--CTAAC--ATTTT-AA-TAAAAG-CTT-AACAAAT-TTGG-TTTTCTAGAGATTTGTTATCAATTT--------------T--G---------GTTT-----ACAA------TA-CA--CA--------T-ATAAC------------AAA----CGGCAGTTCTT------GTTTT----GATT-T---------AT--GTGT---------ATGTTT--TG---TTT---TGTTTTA---AATATTTTTC----TGCAGAAAATTG------G-A-GAAATTCACACTTC-TCAGTT-AGGAAGAAA---A-G--GT-A-C-CTT-TTTTG-C--A--T--TTGGAACGGGGCTGTTCAA--CAGCCCT--AAT-T----ATAGAGAACC-GAGAGCCCTG
gi|18 : GGGCTCTCACAC--CAC-TTTTA---GTGAAT-G-GGACC----GGGGCCG-TTCA-AA-T--TGCTAAAATA-A-CAGATA----T-TTT-------TGAAA-AATTTGG--G-------G--AA-----AA--C-GAC--AATC--AC-CAAAAA-TTC-ATCAAAT-Tt
gi|2 : GGGCTCTTGCAC--CAC-TTTT---------T-G-GGACT----GGGGC------A-AA-T-------AAACG-A-C----A----T-T-T--T-GGGGG-AA-AATTA-G--C-------A--AATGATTAATCC-AAC--ATTT--AC-AAAAAAGCTA-AACAA-C-TTTGGTTTTCTGGAGATTTGTTATCAATTTTG--G-------TTTACA---------AT----------A------TA-CA--TA--------T-A--AC------------AAATGTGCAGTTGTT-TTTTTGTTGTTTT----TTTTATCTATG---TGT--GTGTGTCTTGTTGATTTTTA-AAAAA----------------AATATTTTT---ATGCAGA-AAATTG------G-G-CGT-TTCACACTTTCTCAAT--AGGAAAATA-----G--GT-T-C-TTT-TTTTG-C--A--T--TGGGAATGGGACAGTTCAA--TGGCCCCCAATTAT----A-AGAGAATC-GAGAGCCCTGa
gi|21 : GGGCTCTCACAC--CAC-TTTTG---GGGAAT-G-GGGCT----GGGGCCG-TTCA-AA---ATGGGAAAAatt
gi|23 : caGGGCTTTCACAC--CACATTAT----GGGAATCGCGGGCT----GGGACAG-TTCA-AA-T--TGGGAAAATT-T-C---CA----T-TAT-TT-GGGaaggtacctttttccaattgggaatagg
gi|11 : GGCCCTCACAC--AAC-CTTTT---TGGAAT-G-GGGCCCGTGGGGGCCT-TTCA-AA-T--TTGGAAAATT-A-C---CA----T-TATTAT----TG----------G--G-------A--AA-----AA--C-AAC--ATTC--AC--AAAAA-CTCAATCAAAT-TTTGCTTTTCTATTGTTTGGTTTTCAATTC----A-------TTTATG---------GTTT-----TGAA------TA-CA--CA--------G-A--ACTTCAACATGTGTA------CAGTAAGT-TT------ATTTT----GAATATCCAAA---AAT--CTGT--CCT--TAATGTTCA-gata
gi|12 : GGCTCTCACACTGCAC-TTTTT---GGGAAT-T-GGGCC----GGAGCCG-TTCA-AA-T--TGGGAAAATT-A-C---TG----T-TAT--T----TG-GA-AA------------------AA-----AA--C-AAC--ATTC--AC-GAAAAA-CTC-ATCACAT-TTTGCTTTTCTGTTTCTTTGTTTTCAACTTTTCGA-------TTTATG---------G
gi|25 : GCTCTCCCAC--CAC-TTTTA---GGGAAT-G-GGACC----AAGGCCA-TTCA-AA-T--TGGGAAAAGT-A-T---CG----T-Taaaaaaggtagtacctttttccatttgggaatggagctgttcaatggccctattcatagagaatcgagagctct
gi|22 : aGCTCTCAAAC--C---TTGTTTTTGGGAAT-G-GGGCC----AGGATTG-TTCA-AA---ATGGGGAAATT-A-C---CA----T-CAT-AT-TTGGG-AA-AATT--
gi|13 : CTCTCACAC--CAC-ATTTT---GGGAGT-G-GGACT----GGAGCCA-TTCA-A--T--TGGGAAAATG-A-C---CG----T-CAT-TT-GGG-G-GA-AATT--G--AG------A--AA-----AA--C-AAC--ATTC--AC------A-CTC-ATAAAAT-TTTGCTTTTCTATTGTTT
gi|17 : cCTTTCACAC--CAC-TTTTT---GGGAATAG-GGGGC----AGGGTCG-TTCA-AA---GTGG------T-A-T---AA----T-TAC-A----GT--AA-TGTTTGG--G-------A--AA-----AA--C-AAC--ATCA--AC--AAAAA-CTC-A--AAAT-Taattggcaaaagaagtattttatttccaattgagaatggggctgttcaagtgtcccatttatagagattcgagagccctgtac
gi|3 : TCTCGCAC--CAC-TGTTT---GGGAAT-G-GGGCA----GAGGCTG-TTCA-TA-TTG-GGGAAAATT-A-T---CG----T-TAT-TTTAGG-G-AA-AATT--G--G-------G--GG-----GG--G-GGGGGATTT--AC-GAAAAA-CTT-ATAAAAAATTTGCTTTTCTATTGTTTTG--------------A-------T----G---------ATTC-----TGGA------TA-CA--CA--------T-G-----------------------TAGTAAAT-TT------ATTTT----AGATATCCAAA---AAT--CTAT--CCT--TAATGTTCA-TGAAATAC---TTT-------ATAATTTTTC--TCTAAGGGAAATAG------G-G-AAAATTCT-ACTTT-TAAATT--GGGGAAAA---AAG--GT-A-C-TGT-TTT---CTAA--T--TGGGAATGGAACCATTCAG--TAGCCTC--ATT-T----GTAGAGAATT-GAGAGCCCTGgggaaaattccactttta
gi|5 : TCTTACAC--CAC-GTTTT---GGAAAT-G-GGGCC----CGGGTCG-TTCAGAA-T--TTGAAAAATT-A-C---TG----TATAT-TT-TGGGG-AA-ATTG--G--G-------A--AA-----AA--C-AAC--ACTC--ACACAAA-A-ATC-ATAAAAT-TTTGCTTTTCTATTGCTTTGT-------------A-------T----G---------CTCT-----TGGA------TA-CA--CA--------T-A--AC------------A------TAAGAAGT-TT------ATTTTTTTCAAATATCCACA---AAT--GTGT--CCT--TAATGTTCA-TGAAG-------------------ATTTTTC--AATAAGGGATATTG------G-G-AAAATTCC-ACTTT-TAAA----------AA---AAG--GT-A-CCTTT-TTT---C--A--AT-TGGGAATGGGGCTGATCAA--CAGCCCC--ATC-T----ATAGAGAATC-GAAAACTCTGac
gi|9 : TCTTACAC--CAC-TCTT----TGGAAT-G-GGGCC----AGGGCCA-TTCA-AA-TAG--GGAAA------C---TG----T-AAT-AC-TGGTT-AA-TTTT--G--G-------GGGAA-----AA--C-AAC--ATTC--AC-AAAAAA-CTC-ATCAAAT-TCTGCTTTTCTGTTGTTTTGTTTTCAATT------------------G---------GTTT-----TGGA------TC-CA--TA--------
gi|15 : tcta---GGGAAT-A-GGGCT----G---CTG----A-AA-CAG--GAAAAATT-A-C---TGGGGTT-TTT-GT-AAG-------ATT------------------------------AC--ATTC---T-TAAGAA-CTC-AACAAAT-TTTGTTTTTCTCTT---TGGTTTTCGATTT----A-------T----G---------GTTT-----TCTA------TA-CA--CAATT-----T-AT-AC------------A------TGGTAAGT-TT------ATTAT----AGATATCCAAA---AAT--CTGC--Catgttcatgaaatgctctaagatttttttgatagggatattgggaaaattccactcctttttgcaaatggaaatgggaccattaaacgcggccccatttctagagaatcacgagccctga
gi|26 : ---GGGAAT-G-GGGCC----GGGGC---CTCA-AATTGGT----AAATT-AGT---TA----T-T
gi|6 : tttttGGAT-G-GGGCCC---GGGGCCAATTCA-AA-T--TGGTAAAAT--A-T---AG----T-TAT-TT-TGG-G-ACTAATT--G--G-------G--AA-----AA--C-TAA--ATTCTAAC-AAAAAAACT------AAT-TTTGGTTTTCT-TTGTTTTGTTTTCA-TTT----A-------TAT-------------------------------TA-CA--TG--------TTA--AC------------A------CATTAAGT-TTT-----ACTTT----AAATATCCAAA---AAC--TGGT--CCT--TTATGTTCA-TGAAATAC---TCCCCCAAAAAAAA----TC--GATAAGAGAAATTG------G-GAAAAATTCC-ACTTT-TAAATTGAGG--AAAA---AGG--GT-GCC-TTT-TTC---C--A--AA-TGGGAATGCGTATGTTCAG--CAGCCCC--ATT-T----ATAGAAAATC-AAGAGCCCTGcggaataattag
gi|7 : -G-GGGTT----GGGGTCG-CTCA-GA-C--TGGTAAAATT-A-C---AG----G-TAT-TT-AGGGG-AA-AATT--T--GTATTACTA--AA-----AA--T-AAC--TTTT--AT-AAAATA-TTC-ATAAGAT----------CTATTGTCTTA-----GATTT----A-------TTTATA---------ATTT-----TGGACACATTTA-CA--CG--------T-A--AC------------A------CAGTAAAT-TT------ATTCC----AAATATTAAAA---AAT--CTGC--CCT--TAATTTTCA--AAAATGC---TCA-------AAAATTTTTC--GATAAGGGAAATTT------G-G-AAAAGGAA-AATTT-CACTTC-GGG--TAAA---AAG--GT-A-C-CTT-TTT---CCAA--T--TGGGAATGGGGCCa
gi|10 : T-TTTGCTTTTGTATTATTTTGTTTTCAATTT----AATCTAGTTTTGGGTACACATGAGTTTATTTCTTGA------TATCATTCAATAGATCTT-G--AT------------A------TTGCAAGT-TT------ATTTT----GAATAT---AATTTAATAGCTGT--TCT--TAATGTTCA-TGAAAAGT---TCT-------AAAAAATTTC--GCTAAGGG----TAGGGGGGG-G-GGAATCC--ACTTT-CAAATTGAAGAAAAAAGTTAAG--GT-T-C-CTT-TTC---CA-A--TATTTGGAACGGGGCCATTCAA--tgttcaa
gi|8 : GTAAGT-TT------GTTTT----AGATATCCAAA---AG---CTGT--CCC--TAATGTTCATTGAAA-GCTCTTGT---------TATTTTCG--A-TAAGGGAAAGGG------G-G-TAAATTCC-ACTTT-TAAATT--GGAGGAAA---AAG--GT-ACC-TTT-TTC---C--AATTT-TGGGAATGGGTCAATTCAA--CGGCCTC--ATT-T----ATAGAGAATC-GAGATCCCTG
gi|16 : aaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaatagatttcaatattT-TT------ATTTT----GAATATCCAAA---ACT--CTGT--CCT--TAATGTTCA-TGAAATGC---TCT-------GG-------------AAA--AAATCA------ATG-AA--TTCA----TT-T---TT-GGGAAAAG------G--GTTC-C-TTT-TCT---C--A--AT-TGGAAATGGGGCCCTTCAA--TGACCCC--ATT-T----ACAGAGAATT-GAGAGCCCTG
gi|9 : T--CCA--TAATGTTCA-TGAAATGC---TCT-------AAGATTTTTTTGAT--AGGGATATTG------G-G-AAAATTCC-ACTC-------------------------------C-TTT-TTG---C--A--AA-TGGAAATGGGACCATTAAACGCGGCCCC--ATT-T----CTAGAGAATC-ACGAGCCCTG
gi|19 : tctatcttacaccactctttggaatggggccagggccattcaaatagggaaactgtaatactggttaattttgggggaaaacaacattcacaaaaaactcatcaaattctgcttttctgttgttttgttttcaattggttttggaAAGGGAAACTG------G-G-AAAATTCC-ACTTT-TAA-TT-GG--AAAAA---AGG--GT-A-C-CTT-TTT---C--C---------AACTGGG------AA--CGGCCCC--ACT-T----AAAGAGAATC-AACAGCCCTa
gi|12 : TTCA-ACTTT-TCGATTTATGGAAAAA---AGGTAGT-A-C-CTT-TTT---CC-A--TT-TGGGAATGGAGCTGTTCAA--TGGCCCT--ATT-C----ATAGAGAATC-GAGAGCTCT
gi|13 : ggctctcacactgcactttttgggaattgggccggagccgttcaaattgggaaaattactgttatttggaaaaaaacaacattcacgaaaaactcatcacattttgcttttctgtttctttgttGTTT---AATT-GGCAAAAGA---A----GT-A-T-TTTATTT---CCAA--T--TGAGAATGGGGCTGTTCAA--GTGTCCC--ATT-T----ATAGAGATTC-GAGAGCCCTG
gi|20 : cctctcacaccacattttgggagtgggactggagccattcaattgggaaaatgaccgtcatttgggggaaattgagaaaaacaacattcacactcataaaattttgcttttctattTT-TAAATT-AGGAAAAAG-----G--GT-A-CCTTT-TTT---C--A--AT-TAGGAACAGGGCCGTTCAA--CGGCCCC--ATT-T----ACAGAGAATC-GAAAGCCCTGtac
gi|21 : caccTT-CAAAAT-GGGAAAA-----AAG--GT-A-C-CTT-TTT---CCAA--T--TGGGAATAGGac
gi|21 : cagggctctcacaccacttttggggaatggggctggggccgAAA---AAG--GT-A-C-CTT-TTTTCCC--A--T--TTTGAAC--GGCCC-------CAGCCCC--ATT-CCCCAAAAGTG-GTGTGAGAGCCCTG
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ATCAATATTGGGAATTTAGCAGCTTATTTTTGGGGAAATTATTTGATCAATCCAACATTTTAAAAAAATGAAAAAATTTGTTAATCAATTGGTTTTGGGTTTGTCAGATACAGCATAATAAGCGATTAACGTACGGTTCGTTTCTTGTTTTTGATTTTAAGTGTGTGTTTTGTTTTGTTTTTTTTTC
Unaligned ( gi|24 ): CTACAAAGCAGCTTATTAATATATTATTAAATTGAAAAATAAAAAGTATTCTACAAATAGAA
Unaligned ( gi|27 ): AAGATTGGGAAAAAAGGTACCTTTATCCAGTTGGGTATAGGGTCGTTCAG
Unaligned ( gi|28 ): TACAGAGAATCGAAAGCCCTGACATTGTGT
Alignments
lowQualScore : 111 1111111111 5555555555555555555555555555555555555555555555555 333333333333333333333333333333333 1111111111 111111111111111 33333333333
lowQualScore : 33 2 4 2 6666 2 2 22 2 2 4 2 3 1 111 4444 8888888888 77777 33 2 33 66 6 5 2 22 2 0 0 1 5555555555555555555555555555555555555555555555555 3 55 666666666666666666666666666666666 3 4444444444 44 3 7777 555 44 3 3 3 4 333333333333333 33 5 888888 2 33 555 2 1 333 2 999 88888 2 2 2 77777777777 2 2 0 33 33 2 2 5555
lowQualScore : .. . . . .... . . .. . . . . . . ... .... .......... ..... .. . .. .. . . . .. . . . . ................................................. . .. ................................. . .......... .. . .... ... .. . . . . ............... .. . ...... . .. ... . . ... . ... ..... . . . ........... . . . .. .. . . ....
lowQualScore : 77 5 2 1 6666 1 1 99 1 2 2 2 3 8 999 9999 6666666666 11111 99 9 99 88 6 7 9 55 7 8 1 3 2222222222222222222222222222222222222222222222222 6 00 111111111111111111111111111111111 6 6666666666 66 3 1111 888 66 1 3 6 5 444444444444444 22 7 222222 9 99 999 2 3 777 1 888 55555 1 1 1 44444444444 1 1 1 66 22 9 7 7777
consensus : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT-TACCGT-TATTTNGGGGAAAATT--G-G-------A--AA-----AA--C-AAC--ATTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTTGTTTTCAATTTA-------TTT--GG-T---------TT----TG------GA------TA-CA--CA--------T-A--AC------------A--CA-GTA-AGT----------T--T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGG-AA--AATTC-C-ACTTT-TAAATT---G-G-GAAAAAA---AAGGTACCTT-T-T-T---CCA-A---T-T-GGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
Reference ( family-68 ) : GGGCTCTCACAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT-TACCGT-TATNTNGGNGAAAATT--G-G-------A--AA-----AA--C-AAC--ATTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTTGTTTTCAATTTA-------TTTA-GG-T---------TT----TG------GA------TA-CA--CA--------T-A--AC------------A--CG-GTA-AGT----------T--T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAN-A-TTTTTCGNTAAGGG-AAATT------GGG-AA--AATTC-N-ACTTT-TAAATT---G-G-GAAAAAA---AAGGTACCTT-T-T-T---C---A---T-T-GGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
gi|1 : GGGCTCTTGCAC--CAC-TTGTAGGGAAT-G-GGGCC----GGGGCTG-TTCA-AATGGTGGG-AAAAT-TATTAT-TATATAGGTGAAAATT--G-A-------A--AA-----AA--C-AAC--ATCC--ACTAAATA-CTC-GTCAAAT-TTTGCTTTTCTATTGTTTTGTTTTCAATTTA-------TTTA-GGGT---------TT----TG------GA------TA-CA--CA--------T-A--AC------------A--CA-GTA-AAT----------T--T-ATTTT----AAGTATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTGT-------AAT-A-TTTTTCATTAAGGG-AAATT------AGG-AA--AATTC-A-AGTTT-TAAATT---A-G-GAAAAAA---AAGGTACTTT-T-T-T---C---A---TAT-GGGAACGGGGCC-CTTTAA--CGG-CCCCATTTAG-AGAGAAT----GGAGAGCCCTG
gi|10 : T-TTTGCTTTTGTATTATTTTGTTTTCAATTTAATCTAGTTTTG-GG-TACACATGAGTT----TATTTCTTGA------TATCATTCAATAGATCTT-G--AT------------A--TT-GCA-AGT----------T--T-ATTTT----GAATAT---AATTTAATAGCTGT-TCTTAATG-TTCAT-GAAAAGTTCT-------AAA-A-AATTTCGCTAAGGGTAGGGG------GGG-GG--GAATC-C-ACTTT-CAAATT---GAA-GAAAAAAGTTAAGGTTCCTT-T-T-C---CAATA---T-T-TGGAACGGGGCC-ATTCAA--c
gi|11 : GGCCCTCACAC--AAC-CTTTTTGGAAT-G-GGGCCCGTGGGGGCCT-TTCA-AAT--TTGG-AAAAT-TACCAT-TATT---------ATT--G-GG------A--AA-----AA--C-AAC--ATTC--AC-AAAAA-CTCAATCAAAT-TTTGCTTTTCTATTGTTTGGTTTTCAATTCA-------TTTATGG-T---------TT----TG------AA------TA-CA--CA--------G-A--ACTTCAACATGTGTA--CA-GTA-AGT----------T--T-ATTTT----GAATATCCAAA---AAT--CTGT-CCTTAATG-TTCA
gi|12 : GGCTCTCACACTGCAC-TTTTTGGGAAT-T-GGGCC----GGAGCCG-TTCA-AAT--TGGG-AAAAT-TACTGT-TATTTGG-----AA--------------A--AA-----AA--C-AAC--ATTC--ACGAAAAA-CTC-ATCACAT-TTTGCTTTTCTGTTTCTTTGTTTTCAACT---------TTTC-GA-T---------TTA---TG------GA------
gi|12 : TTC-A-ACTTT-TCGATTTATG-G-AAAAAAG---GTAGTACCTT-T-T-T---CC--A---T-TTGGGAATGGAGCT-GTTCAA--TGG-CCCTATTCAT-AGAGAAT----CGAGAGCTCTaaaaaggtagtacctttttccatttgggaatggagctgttcaatggccctattcatagagaatcgagagctct
gi|13 : ggctctcacactgcactttttgggaattgggccggagccgttcaaattgggaaaattactgttatttggaaaaaaacaacattcacgaaaaactcatcacattttgcttttctgtttctttgttCTCTCACAC--CAC-ATTTTGGGAGT-G-GGACT----GGAGCCA-TTC--AAT--TGGG-AAAAT-GACCGT-CATTTGGGGG-AAATT--GAG-------A--AA-----AA--C-AAC--ATTC--AC-----A-CTC-ATAAAAT-TTTGCTTTTCTATTGTTT
gi|13 : cTTC-T-ATTGT-TTAATT---G-G-CAAAAGA---A--GTATTTTAT-T-T---CCA-A---T-T-GAGAATGGGGCT-GTTCAA--GTG-TCCCATTTAT-AGAGATT----CGAGAGCCCTGaattggcaaaagaagtattttatttccaattgagaatggggctgttcaagtgtcccatttatagagattcgagagccctgtac
gi|15 : cctctcacaccacattttgggagtgggactggagccattcaattgggaaaatgaccgtcatttgggggaaattgagaaaaacaacattcacactcataaaattttgcttGGGAAT-A-GGGCT----G---CTG----A-AAC--AGGA-AAAAT-TACTGG-GGTTTTTGT-AAGATT-----------------------------AC--ATTC---TTAAGAA-CTC-AACAAAT-TTTGTTTTTCTCTT---TGGTTTTCGATTTA-------T----GG-T---------TT----TC------TA------TA-CA--CAATT-----T-AT-AC------------A--TG-GTA-AGT----------T--T-ATTAT----AGATATCCAAA---AAT--CTGC-Ctac
gi|16 : T----------T--T-ATTTT----GAATATCCAAA---ACT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------GGA-A--------------A-AAATC----------AATGAATTC-A----TT-T---TT---G-G-GAAAAG------GGTTCCTT-T-TCT---C---AA--T-T-GGAAATGGGGCC-CTTCAA--TGA-CCCCATTTAC-AGAGAAT----TGAGAGCCCTG
gi|17 : CTTTCACAC--CAC-TTTTTGGGAATAG-GGGGC----AGGGTCG-TTCA-AAG--TGGT-ATAAT-TACAGT-AATGTTTG----------G-G-------A--AA-----AA--C-AAC--A-TC--AACAAAAA-CTC-A--AAAT-T
gi|17 : -AAATT------GGG-AA--AATTC-C-ACTTT-TAgggaaaattccactttta
gi|18 : ctttcacaccactttttgggaatagggggcagggtcgttcaaagtggtataattacagtaatgtttgggaaaaacaacatcaacaaaaactcaGGGCTCTCACAC--CAC-TTTTAGTGAAT-G-GGACC----GGGGCCG-TTCA-AAT--TGCT-AAAAT-AACAGA-TATTTTTGA-AAAATTTGG-G-------G--AA-----AA--C-GAC--AATC--ACCAAAAA-TTC-ATCAAAT-T
gi|19 : AAGGG-AAACT------GGG-AA--AATTC-C-ACTTT-TAA-TT---G-G---AAAAA---AGGGTACCTT-T-T-T---C---C----------AACTGGG-------AA--CGG-CCCCACTTAA-AGAGAAT----CAACAGCCCTa
gi|2 : GGGCTCTTGCAC--CAC-TTTTTGGGACT-G-GGGC----------------A-AAT--------AAAC-GAC-AT-T--TTGGGGGAAAATT--A-GC------A--AATGATTAATCC-AAC--ATTT--ACAAAAAAGCTA-AAC-AAC-TTTGGTTTTCTGGAGATTTGTTATCAATTT--------T----GG-T---------TTACAAT--------A------TA-CA--TA--------T-A--AC------------A--AATGTGCAGTTGTTTTTTTGT--T-GTTTT----TTTTATCTATG---TGT--GTGTGTCTTGTTGATTTTT-AAAA-------------AAA-A-TATTTTTATGCAGA-AAATT------GGG--C--GTTTCAC-ACTTTCTCAATA---G-G----AAAA---TAGGTTCTTT-T-T-TTG-C---A---T-T-GGGAATGGGACA-GTTCAA--TGGCCCCCAATTATAAGAGAAT----CGAGAGCCCTG
gi|20 : -ACCTT-TAAATT---A-G-GAAAAAG-----GGTACCTT-T-T-T---TCA-A---T-T-AGGAACAGGGCC-GTTCAA--CGG-CCCCATTTAC-AGAGAAT----CGAAAGCCCTGatt
gi|21 : cAATT---G-G-----AAA---AAGGTACCTT-T-T-TTCCC---A---T-T-TTGAAC--GGCC----C----CAG-CCCCATTCCC-CAAAAGTGGTGTGAGAGCCCTGac
gi|21 : GGGCTCTCACAC--CAC-TTTTGGGGAAT-G-GGGCT----GGGGCCG-TTCA-AAA--TGGG-AAAAgggaatagg
gi|21 : caTT-CAAAAT---G-G-GAAAA-----AAGGTACCTT-T-T-T---CCA-A---T-T-GGGAATAGGaaggtacctttttccaattgggaatagg
gi|22 : cagggctctcacaccacttttggggaatggggctggggccgGCTCTCAAAC--CTTGTTTTTGGGAAT-G-GGGCC----AGGATTG-TTCA-AAA--TGGG-GAAAT-TACCAT-CATATTTGGGAAAATT--
gi|23 : GGGCTTTCACAC--CAC-ATTATGGGAATCGCGGGCT----GGGACAG-TTCA-AAT--TGGG-AAAAT-TTCCAT-TATTTGGG
gi|25 : GCTCTCCCAC--CAC-TTTTAGGGAAT-G-GGACC----AAGGCCA-TTCA-AAT--TGGG-AAAAG-TATCGT-Tgata
gi|26 : a-TTTTTGGGAAT-G-GGGCC----GGGGCC---TCA-AAT--TGGT--AAAT-TA--GT-TAT-TCGGA-ATAATT--A-G-------
gi|27 : AGATT---G-G-GAAAA-----AAGGTACCTT-TAT-C---C---AG--T-T-GGGTATAGGGTC-GTTCA
gi|28 : aTAC-AGAGAAT----CGAAAGCCCTGg
gi|3 : TCTCGCAC--CAC-TGTTTGGGAAT-G-GGGCA----GAGGCTG-TTCA-TAT--TGGGGAAAAT-TATCGT-TATTTTAGGGAAAATT--G-G-------G--GG-----GG--G-GGGGGATTT--ACGAAAAA-CTT-ATAAAAAATTTGCTTTTCTATTGTTTTG----------A-------T----GA-T---------TC----TG------GA------TA-CA--CA--------T-G-------------------TA-GTA-AAT----------T--T-ATTTT----AGATATCCAAA---AAT--CTAT-CCTTAATG-TTCAT-GAAATACTTT-------ATA-A-TTTTTCTCTAAGGG-AAATA------GGG-AA--AATTC-T-ACTTT-TAAATT---G-G-G-GAAAA---AAGGTACTGT-T-T-T---CTA-A---T-T-GGGAATGGAACC-ATTCAG--TAG-CCTCATTTGT-AGAGAAT----TGAGAGCCCTGacattgtgt
gi|4 : GGGCTCTCGCAC--CAC-ATTTTGGG--------GCA----GGGGCCG-ATCA-GAT--TGGG-AAAAT-T--CGG-CATTTGGGGGAAAATT--G-GGA-----A--AA-----AA--CTAAC--ATTTT-AATAAAAG-CTT-AACAAAT-TTGG-TTTTCTAGAGATTTGTTATCAATTT----------T--GG-T---------TT----AC------AA------TA-CA--CA--------T-ATAAC------------AAACG-GCA--GT----------TCTT-GTTTT----GATT-T---------AT--GTGT------ATG-TTT-T-GTTTTGTTTT-------AAATA-TTTTTCTGCA--GA-AAATT------GGA-GA--AATTC-ACACTTC-TCAGTT---A-G-GAAGAAA---A-GGTACCTT-T-T-TTG-C---A---T-T-TGGAACGGGGCT-GTTCAA--CAG-CCCTAATTAT-AGAGAAC----CGAGAGCCCTGac
gi|5 : TCTTACAC--CAC-GTTTTGGAAAT-G-GGGCC----CGGGTCG-TTCAGAAT--TTGA-AAAAT-TACTGTATATTTTGGGGAAATTG--G-G-------A--AA-----AA--C-AAC--ACTC--ACACAAAA-ATC-ATAAAAT-TTTGCTTTTCTATTGCTTTGT---------A-------T----GC-T---------CT----TG------GA------TA-CA--CA--------T-A--AC------------A--TA-AGA-AGT----------T--T-ATTTTTTTCAAATATCCACA---AAT--GTGT-CCTTAATG-TTCAT-GAA----------------G-A-TTTTTCAATAAGGG-ATATT------GGG-AA--AATTC-C-ACTTT-TAAA--------------AA---AAGGTACCTT-T-T-T---TCA-A---T-T-GGGAATGGGGCT-GATCAA--CAG-CCCCATCTAT-AGAGAAT----CGAAAACTCTGt
gi|6 : GGAT-G-GGGCCC---GGGGCCAATTCA-AAT--TGGT-AAAATATA--GT-TATTTTGGGACTAATT--G-G-------G--AA-----AA--C-TAA--ATTCTAACAAAAAAACT------AAT-TTTGGTTTTCT-TTGTTTTGTTTTCA-TTTA-------TAT-------------------------------------TA-CA--TG--------TTA--AC------------A--CA-TTA-AGT----------T--TTACTTT----AAATATCCAAA---AAC--TGGT-CCTTTATG-TTCAT-GAAATACTCCCCCAAAAAAA-A-----TCGATAAGAG-AAATT------GGGAAA--AATTC-C-ACTTT-TAAATT---G-A-G-GAAAA---AGGGTGCCTT-T-T-T---CCA-A---A-T-GGGAATGCGTAT-GTTCAG--CAG-CCCCATTTAT-AGAAAAT----CAAGAGCCCTG
gi|7 : -G-GGGTT----GGGGTCG-CTCA-GAC--TGGT-AAAAT-TACAGG-TATTTAGGGGAAAATT--T-GTATTACTA--AA-----AA--T-AAC--TTTT--ATAAAATA-TTC-ATAAGAT----------CTATTGTCTTA-----GATTTA-------TTTATAA-T---------TT----TG------GACACATTTA-CA--CG--------T-A--AC------------A--CA-GTA-AAT----------T--T-ATTCC----AAATATTAAAA---AAT--CTGC-CCTTAATT-TTCA--AAAATGCTCA-------AAA-A-TTTTTCGATAAGGG-AAATTTGGAAAAGG-AA--AATTT-C-ACT-------TC---G-G-G--TAAA---AAGGTACCTT-T-T-T---CCA-A---T-T-GGGAATGGGGCCTGTTCAA--a
gi|8 : TTTCGCTAAGGGTAGGGG------GGG-GG--GAATC-C-ACTTT-CAAATT---G-AAGAAAAAAGTTAAGGTTCCTT-T-T-C---C---AATAT-T-TGGAACGGGGCC-ATTCAA--
gi|8 : aaa-GTA-AGT----------T--T-GTTTT----AGATATCCAAA---AG---CTGT-CCCTAATG-TTCATTGAAA-GCTCT-------TGT-T-ATTTTCGATAAGGG-AAAGG------GGG-TA--AATTC-C-ACTTT-TAAATT-----G-GAGGAAA---AAGGTACCTT-T-T-TC--C---AATTT-T-GGGAATGGGTCA-ATTCAA--CGG-CCTCATTTAT-AGAGAAT----CGAGATCCCTGtagatttcaatattgtaagtttgttttagatatccaaaagctgtccctaatgttcattgaaagctcttgttattttcgataagggaaagggggtaaattccacttttaaattggaggaaaaaggtacctttttccaattttgggaatgggtcaattcaacggcctcatttatagagaatcgagatccctg
gi|9 : aaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaatagatttcaatattTCTTACAC--CAC-TCTTTGG-AAT-G-GGGCC----AGGGCCA-TTCA-AAT--AGGG-AAA-----CTGT-AATACTGGTTAATTTT--G-G-------GGGAA-----AA--C-AAC--ATTC--ACAAAAAA-CTC-ATCAAAT-TCTGCTTTTCTGTTGTTTTGTTTTCAATT--------------GG-T---------TT----TG------GA------TC-CA--TA--------
gi|9 : tctaT-CCATAATG-TTCAT-GAAATGCTCT-------AAG-ATTTTTTTGAT-AGGG-ATATT------GGG-AA--AATTC-C-ACT--------------------------------CCTT-T-T-TG--CA--A---A-T-GGAAATGGGACC-ATTAAACGCGG-CCCCATTTCT-AGAGAAT----CACGAGCCCTGatgttcatgaaatgctctaagatttttttgatagggatattgggaaaattccactcctttttgcaaatggaaatgggaccattaaacgcggccccatttctagagaatcacgagccctga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAATATTGGGAATTTAGCAGCTTATTTTTGGGGAAATTATTTGATCAATCCAACATTTTAAAAAAATGAAAAAATTTGTTAATCAATTGGTTTTGGGTTTGTCAGATACAGCATAATAAGCGATTAACGTACGGTTCGTTTCTTGTTTTTGATTTTAAGTGTGTGTTTTGTTTTGTTTTTTTTTC
Unaligned ( gi|24 ): CTACAAAGCAGCTTATTAATATATTATTAAATTGAAAAATAAAAAGTATTCTACAAATAGAA
Alignments
lowQualScore : 222222222222 444444444444444444444444444444444444 1111 33333333333333333333333333 1111111111 1111111
lowQualScore : 2 33 2 4 2 6666 2 2 22 2 6666 4 2 2 2 2 77 2 000000000000 77777 33 2 33 2 33 6 5 2 22 2 0 3 777777777777777777777777777777777777 0000 2 999999 3 55 55 00000000000000000000000000 3 3 44 4444444444 3 88888 555 44 3 3 3 6 9999999 444 666 66 5 888888 33 2 4 2 1 99999999 88888 2 2 55 22 2 0 33 33 2 2 5555
lowQualScore : . .. . . . .... . . .. . .... . . . . . .. . ............ ..... .. . .. . .. . . . .. . . . .................................... .... . ...... . .. .. .......................... . . .. .......... . ..... ... .. . . . . ....... ... ... .. . ...... .. . . . . ........ ..... . . .. .. . . .. .. . . ....
lowQualScore : 3 77 5 2 1 6666 1 1 99 1 9999 2 2 2 4 4 66 5 333333333333 11111 99 9 99 9 99 6 7 9 55 7 1 3 333333333333333333333333333333333333 4444 5 666666 6 00 00 99999999999999999999999999 6 6 66 6666666666 3 11111 888 66 1 3 6 7 5555555 111 000 22 7 222222 99 5 7 2 3 44444444 55555 1 1 88 99 1 1 66 22 9 7 7777
consensus : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-TTTGGGGAA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
Reference ( family-68 ) : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-TTNGGGGAA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
gi|1 : GGGCTCTTGCAC--CAC-TTGTAGGGAAT-G-GGGCC----GGGGCTG-TTCA-AATGGTGGG-AAAAT----TATTA-T-TA-T-ATAGGTGAA-AATT--G-A-------AAA-----AA--C-AAC--A-TCC--ACTAAATA-CTC-GTCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--TAGGG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AAT--T----------T-ATTTT----AAGTATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTGT-------AAT-A-TTTTTCATTAAGGG-AAATT------AGGAA--AA-TTC-AAGTTT-TAAATT---A-GGAAAAAA---AAGGTACT-TT-TTTC----A--TATGGGAACGGGGCC-CTTTAA--CGG-CCCCATTTAG-AGAGAAT----GGAGAGCCCTG
gi|10 : T-TTTGCTTTTGTATTATTTT-GTTTTCAATTTAATCTAGTTT--T--GGGTACACATGAGTTTATTTC----TTGA------TATCATTC--AATAGATCTT-G-AT------------ATT-GCA-AGT--T----------T-ATTTT----GAATAT---AATTTAATAGCTGT-TCTTAATG-TTCAT-GAAAAGTTCT-------AAA-A-AATTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--c
gi|11 : GGCCCTCACAC--AAC-CTTTTTGGAAT-G-GGGCCCGTGGGGGCCT-TTCA-AAT--TTGG-AAAAT----TACCA-T-TA-T-T----------ATT--G-GG------AAA-----AA--C-AAC--A-TTC--AC-AAAAA-CTCAATCAAAT-TTTGCTTTTCTATTGTTTG-GTTTTCAATTCA-------TTTAT--GG----------------TTT----TGAA------TA-CA--C--A--------G-A-ACTTCAACATGTGTACA-GTA-AGT--T----------T-ATTTT----GAATATCCAAA---AAT--CTGT-CCTTAATG-TTCA
gi|12 : GGCTCTCACACTGCAC-TTTTTGGGAAT-T-GGGCC----GGAGCCG-TTCA-AAT--TGGG-AAAAT----TACTG-T-TA-T-TT---GGAA-----------------AAA-----AA--C-AAC--A-TTC--ACGAAAAA-CTC-ATCACAT-TTTGCTTTTCTGTTTCTTT-GTTTTCAACTT--------TT--C--GA----------------TTTA---TGGA------
gi|12 : -TTC-AACTTT-TCGATTTATG-GAAAAAAG---GTAGTACC-TT-TTTCCA--T--T-TGGGAATGGAGCT-GTTCAA--TGG-CCCTATTCAT-AGAGAAT----CGAGAGCTCTaaaaaggtagtacctttttccatttgggaatggagctgttcaatggccctattcatagagaatcgagagctct
gi|13 : ggctctcacactgcactttttgggaattgggccggagccgttcaaattgggaaaattactgttatttggaaaaaaacaacattcacgaaaaactcatcacattttgcttttctgtttctttgttCTCTCACAC--CAC-ATTTTGGGAGT-G-GGACT----GGAGCCA-TTCA-A-T--TGGG-AAAAT----GACCG-T-CA-T-TTGGGGG-A-AATT--GAG-------AAA-----AA--C-AAC--A-TTC--AC-----A-CTC-ATAAAAT-TTTGCTTTTCTATTGTTT
gi|13 : c-TTC-TATTGT-TTAATT---G-GCAAAAGA---A--GTATT-TTATTTCCA--A--T-TGAGAATGGGGCT-GTTCAA--GTG-TCCCATTTAT-AGAGATT----CGAGAGCCCTGaattggcaaaagaagtattttatttccaattgagaatggggctgttcaagtgtcccatttatagagattcgagagccctgtac
gi|15 : cctctcacaccacattttgggagtgggactggagccattcaattgggaaaatgaccgtcatttgggggaaattgagaaaaacaacattcacactcataaaattttgcttGGGAAT-A-GGGCT----G---CTG----A-AAC--AGGA-AAAAT----TACTG-G-GG-T-TTTTGT-AA-GATT---------------------------AC--A-TTC---TTAAGAA-CTC-AACAAAT-TTTGTTTTTCTCTT---TG-GTTTTCGATTTA-------T------GG----------------TTT----TCTA------TA-CA--C--AATT-----T-ATAC------------ATG-GTA-AGT--T----------T-ATTAT----AGATATCCAAA---AAT--CTGC-Ctac
gi|16 : T--T----------T-ATTTT----GAATATCCAAA---ACT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------GGA-A--------------A-AAATC---------AATGAA-TTC--ATTTT-T--------G-GGAAAAG------GGTTCC-TT-TTCTCA--A--T-TGGAAATGGGGCC-CTTCAA--TGA-CCCCATTTAC-AGAGAAT----TGAGAGCCCTG
gi|17 : CTTTCACAC--CAC-TTTTTGGGAATAG-GGGGC----AGGGTCG-TTCA-AAG--TGGT-ATAAT----TACAG-T-AA-TGTTTG------------G-G-------AAA-----AA--C-AAC--A--TC--AACAAAAA-CTC-A--AAAT-T
gi|17 : -AAATT------GGGAA--AA-TTC-CACTTT-TAgggaaaattccactttta
gi|18 : ctttcacaccactttttgggaatagggggcagggtcgttcaaagtggtataattacagtaatgtttgggaaaaacaacatcaacaaaaactcaGGGCTCTCACAC--CAC-TTTTAGTGAAT-G-GGACC----GGGGCCG-TTCA-AAT--TGCT-AAAAT----AACAG-A-TA-T-TTT-TGAAA-AATTTGG-G-------GAA-----AA--C-GAC--A-ATC--ACCAAAAA-TTC-ATCAAAT-T
gi|19 : AAGGG-AAACT------GGGAA--AA-TTC-CACTTT-TAA-TT---G-G--AAAAA---AGGGTACC-TT-TTTCCA--A--C-TGGGAACGG-----------------CCCCACTTAA-AGAGAAT----CAACAGCCCTa
gi|2 : GGGCTCTTGCAC--CAC-TTTTTGGGACT-G-GGGC----------------A-AAT--------AAAC----GAC-A-T-T----TTGGGGGAA-AATT--A-GC------AAATGATTAATCC-AAC--A-TTT--ACAAAAAAGCTA-AACAA-C-TTTGGTTTTCTGGAGATTT-GTTATCAATTT------------T--GG----------------TTTACAAT--A------TA-CA--T--A--------T-A-AC------------AAATGTGCAGT--TGTTTTTTTGTT-GTTTT----TTTTATCTATG---TGT--GTGTGTCTTGTTGATTTTT-AAAA-------------AAA-A-TATTTTTATGCAGA-AAATT------GGGCG--T--TTCACACTTTCTCAATA---G-G---AAAA---TAGGTTCT-TT-TTTTGC--A--T-TGGGAATGGGACA-GTTCAA--TGGCCCCCAATTATAAGAGAAT----CGAGAGCCCTG
gi|20 : -CACCTT-TAAATT---A-GGAAAAAG-----GGTACC-TT-TTTTCA--A--T-TAGGAACAGGGCC-GTTCAA--CGG-CCCCATTTAC-AGAGAAT----CGAAAGCCCTGatt
gi|21 : AATT---G-G----AAA---AAGGTACCTTT-TTTCCC--A--T-TTTGAAC--GGCC----C----CAG-CCCCATTCCC-CAAAAGTGGTGTGAGAGCCCTGac
gi|21 : GGGCTCTCACAC--CAC-TTTTGGGGAAT-G-GGGCT----GGGGCCG-TTCA-AAA--TGGG-AAAAgggaatagg
gi|21 : caTT-CAAAAT---G-GGAAAA-----AAGGTACC-TT-TTTCCA--A--T-TGGGAATAGGaaggtacctttttccaattgggaatagg
gi|22 : cagggctctcacaccacttttggggaatggggctggggccgGCTCTCAAAC--CTTGTTTTTGGGAAT-G-GGGCC----AGGATTG-TTCA-AAA--TGGG-GAAAT----TACCA-T-CA-T-ATTTGGGAA-AATT--
gi|23 : GGGCTTTCACAC--CAC-ATTATGGGAATCGCGGGCT----GGGACAG-TTCA-AAT--TGGG-AAAAT----TTCCA-T-TA-T-TTGGGG
gi|25 : GCTCTCCCAC--CAC-TTTTAGGGAAT-G-GGACC----AAGGCCA-TTCA-AAT--TGGG-AAAAG----TATCG-T-Tata
gi|26 : a-TTTTTGGGAAT-G-GGGCC----GGGGCC---TCA-AAT--TGGT--AAAT----TA--G-T-TA-T-TC---GGAATAATT--A-G-------
gi|27 : AGATT---G-GGAAAA-----AAGGTACC-TT-TATCCA--G--T-TGGGTATAGGGTC-GTTCA
gi|28 : aTAC-AGAGAAT----CGAAAGCCCTGg
gi|3 : TCTCGCAC--CAC-TGTTTGGGAAT-G-GGGCA----GAGGCTG-TTCA-TAT--TGGGGAAAAT----TATCG-T-TA-T-TTTAGGGAA-AATT--G-G-------GGG-----GG--G-GGGGGA-TTT--ACGAAAAA-CTT-ATAAAAAATTTGCTTTTCTATTGTTTT-G----------A-------T------GA----------------TTC----TGGA------TA-CA--C--A--------T-G----------------TA-GTA-AAT--T----------T-ATTTT----AGATATCCAAA---AAT--CTAT-CCTTAATG-TTCAT-GAAATACTTT-------ATA-A-TTTTTCTCTAAGGG-AAATA------GGGAA--AA-TTC-TACTTT-TAAATT---G-GG-GAAAA---AAGGTACT-GT-TTTCTA--A--T-TGGGAATGGAACC-ATTCAG--TAG-CCTCATTTGT-AGAGAAT----TGAGAGCCCTGacattgtgt
gi|4 : GGGCTCTCGCAC--CAC-ATTTTGGG--------GCA----GGGGCCG-ATCA-GAT--TGGG-AAAAT----T--CG-G-CA-T-TTGGGGGAA-AATT--G-GGA-----AAA-----AA--CTAAC--ATTTT--AATAAAAG-CTT-AACAAA--TTTGGTTTTCTAGAGATTT-GTTATCAAT----------TT--T--GG----------------TTT----ACAA------TA-CA--CATA--------T-A-ACAA----------ACG-GC--AGTTCT----------T-GTTTT-----GATTT---------AT--GTGT------ATG-TTT-T-GTTTTGTTTT-------AAATA-TTTTTC--TGCAGA-AAATT------GGAGA--AA-TTCACACTTC-TCAGTT---A-GG-AAGAA---AAGGTACC-TT-TTTTGC--A--T-TTGGAACGGGGCT-GTTCAA--CAG-CCCTAATTAT-AGAGAAC----CGAGAGCCCTGac
gi|5 : TCTTACAC--CAC-GTTTTGGAAAT-G-GGGCC----CGGGTCG-TTCAGAAT--TTGA-AAAAT----TACTG-TATA-T-TTTGGGGAA-ATTG--G-G-------AAA-----AA--C-AAC--A-CTC--ACACAAAA-ATC-ATAAAAT-TTTGCTTTTCTATTGCTTT-GT---------A-------T------GC----------------TCT----TGGA------TA-CA--C--A--------T-A-AC------------ATA-AGA-AGT--T----------T-ATTTTTTTCAAATATCCACA---AAT--GTGT-CCTTAATG-TTCAT-GAAG-----------------A-TTTTTCAATAAGGG-ATATT------GGGAA--AA-TTC-CACTTT-TAAA-------------AA---AAGGTACC-TT-TTTTCA--A--T-TGGGAATGGGGCT-GATCAA--CAG-CCCCATCTAT-AGAGAAT----CGAAAACTCTGt
gi|6 : GGAT-G-GGGCCC---GGGGCCAATTCA-AAT--TGGT-AAAATA---TA--G-T-TA-T-TTTGGGACT-AATT--G-G-------GAA-----AA--C-TAA--A-TTCTAACAAAAAAACT------AAT-TTTGGTTTTCT-TTGTTTT-GTTTTCA-TTTA-------TA--T-------------------------------------TA-CA--T--G--------TTA-AC------------ACA-TTA-AGT--T----------TTACTTT----AAATATCCAAA---AAC--TGGT-CCTTTATG-TTCAT-GAAATACTCCCCCAAAAAAA-A-T----CGATAAGAG-AAATT------GGGAA--AAATTC-CACTTT-TAAATT---G-AGGAAAAA---G-GGTGCC-TT-TTTCCA--A--A-TGGGAATGCGTAT-GTTCAG--CAG-CCCCATTTAT-AGAAAAT----CAAGAGCCCTG
gi|7 : -G-GGGTT----GGGGTCG-CTCA-GAC--TGGT-AAAAT----TACAG-G-TA-T-TTAGGGGAA-AATT--T-GTATTACTAAA-----AA--T-AAC--T-TTT--ATAAAATA-TTC-ATAAGAT----------CTATTGTCTTAGATTT--ATTTA-------T------AA----------------TTT----TGGACACATTTA-CA--C--G--------T-A-AC------------ACA-GTA-AAT--T----------T-ATTCC----AAATATTAAAA---AAT--CTGC-CCTTAATT-TTCA--AAAATGCTCA-------AAA-A-TTTTTCGATAAGGG-AAATTTGGAAAAGGAA--AA-TTT-CACT-------TC---G-GG--TAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAATGGGGCCTGTTCAA--a
gi|8 : TTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--
gi|8 : aaa-GTA-AGT--T----------T-GTTTT----AGATATCCAAA---AG---CTGT-CCCTAATG-TTCATTGAAA-GCTCTTGTT---A------TTTTCGATAAGGG-AAAGG------GGGTA--AA-TTC-CACTTT-TAAATT-----GGAGGAAA---AAGGTACC-TT-TTTCCA--ATTT-TGGGAATGGGTCA-ATTCAA--CGG-CCTCATTTAT-AGAGAAT----CGAGATCCCTGtagatttcaatattgtaagtttgttttagatatccaaaagctgtccctaatgttcattgaaagctcttgttattttcgataagggaaagggggtaaattccacttttaaattggaggaaaaaggtacctttttccaattttgggaatgggtcaattcaacggcctcatttatagagaatcgagatccctg
gi|9 : aaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaatagatttcaatattTCTTACAC--CAC-TCTTTGG-AAT-G-GGGCC----AGGGCCA-TTCA-AAT--AGGG-AAACTGTAATACTGGT-TAAT-TTTGGGGGA-AA-----------------------A--C-AAC--A-TTC--ACAAAAAA-CTC-ATCAAAT-TCTGCTTTTCTGTTGTTTT-GTTTTCAA------------T--T--GG----------------TTT----TGGA------TC-CA--T--A--------
gi|9 : tctaT-CCATAATG-TTCAT-GAAATGCTCT-------AAG-ATTTTTTTGAT-AGGG-ATATT------GGGAA--AA-TTC-CACT-------------------------------CC-TT-TTTGCA--A--A-TGGAAATGGGACC-ATTAAACGCGG-CCCCATTTCT-AGAGAAT----CACGAGCCCTGatgttcatgaaatgctctaagatttttttgatagggatattgggaaaattccactcctttttgcaaatggaaatgggaccattaaacgcggccccatttctagagaatcacgagccctga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAATATTGGGAATTTAGCAGCTTATTTTTGGGGAAATTATTTGATCAATCCAACATTTTAAAAAAATGAAAAAATTTGTTAATCAATTGGTTTTGGGTTTGTCAGATACAGCATAATAAGCGATTAACGTACGGTTCGTTTCTTGTTTTTGATTTTAAGTGTGTGTTTTGTTTTGTTTTTTTTTC
Unaligned ( gi|24 ): CTACAAAGCAGCTTATTAATATATTATTAAATTGAAAAATAAAAAGTATTCTACAAATAGAA
Alignments
lowQualScore : 222222222222 444444444444444444444444444444444444 1111 33333333333333333333333333 1111111111 1111111
lowQualScore : 2 33 2 4 2 6666 2 2 22 2 6666 4 2 2 2 2 2 1 2 2 111111111111 77777 33 2 33 2 33 6 5 2 22 2 0 3 777777777777777777777777777777777777 0000 2 999999 3 55 55 00000000000000000000000000 3 3 44 4444444444 3 88888 555 44 3 3 3 6 9999999 444 666 66 5 888888 33 2 4 2 1 99999999 88888 2 2 55 22 2 0 33 33 2 2 5555
lowQualScore : . .. . . . .... . . .. . .... . . . . . . . . . ............ ..... .. . .. . .. . . . .. . . . .................................... .... . ...... . .. .. .......................... . . .. .......... . ..... ... .. . . . . ....... ... ... .. . ...... .. . . . . ........ ..... . . .. .. . . .. .. . . ....
lowQualScore : 3 77 5 2 1 6666 1 1 99 1 9999 2 2 2 4 4 4 2 4 5 000000000000 11111 99 9 99 9 99 6 7 9 55 7 1 3 333333333333333333333333333333333333 4444 5 666666 6 00 00 99999999999999999999999999 6 6 66 6666666666 3 11111 888 66 1 3 6 7 5555555 111 000 22 7 222222 99 5 7 2 3 44444444 55555 1 1 88 99 1 1 66 22 9 7 7777
consensus : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
Reference ( family-68 ) : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
gi|1 : GGGCTCTTGCAC--CAC-TTGTAGGGAAT-G-GGGCC----GGGGCTG-TTCA-AATGGTGGG-AAAAT----TATTA-T-TA-T-A-TAGGTG-AA-AATT--G-A-------AAA-----AA--C-AAC--A-TCC--ACTAAATA-CTC-GTCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--TAGGG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AAT--T----------T-ATTTT----AAGTATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTGT-------AAT-A-TTTTTCATTAAGGG-AAATT------AGGAA--AA-TTC-AAGTTT-TAAATT---A-GGAAAAAA---AAGGTACT-TT-TTTC----A--TATGGGAACGGGGCC-CTTTAA--CGG-CCCCATTTAG-AGAGAAT----GGAGAGCCCTG
gi|10 : T-TTTGCTTTTGTATTATTTT-GTTTTCAATTTAATCTAGTTT--T--GGGTACACATGAGTTTATTTC----TTGA------TATCATTC--AATAGATCTT-G-AT------------ATT-GCA-AGT--T----------T-ATTTT----GAATAT---AATTTAATAGCTGT-TCTTAATG-TTCAT-GAAAAGTTCT-------AAA-A-AATTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--c
gi|11 : GGCCCTCACAC--AAC-CTTTTTGGAAT-G-GGGCCCGTGGGGGCCT-TTCA-AAT--TTGG-AAAAT----TACCA-T-TA-T-TATTGGG---------------------AAA-----AA--C-AAC--A-TTC--AC-AAAAA-CTCAATCAAAT-TTTGCTTTTCTATTGTTTG-GTTTTCAATTCA-------TTTAT--GG----------------TTT----TGAA------TA-CA--C--A--------G-A-ACTTCAACATGTGTACA-GTA-AGT--T----------T-ATTTT----GAATATCCAAA---AAT--CTGT-CCTTAATG-TTCA
gi|12 : GGCTCTCACACTGCAC-TTTTTGGGAAT-T-GGGCC----GGAGCCG-TTCA-AAT--TGGG-AAAAT----TACTG-T-TA-T-T-T---GG-AA-----------------AAA-----AA--C-AAC--A-TTC--ACGAAAAA-CTC-ATCACAT-TTTGCTTTTCTGTTTCTTT-GTTTTCAACTT--------TT--C--GA----------------TTTA---TGGA------
gi|12 : -TTC-AACTTT-TCGATTTATG-GAAAAAAG---GTAGTACC-TT-TTTCCA--T--T-TGGGAATGGAGCT-GTTCAA--TGG-CCCTATTCAT-AGAGAAT----CGAGAGCTCTaaaaaggtagtacctttttccatttgggaatggagctgttcaatggccctattcatagagaatcgagagctct
gi|13 : ggctctcacactgcactttttgggaattgggccggagccgttcaaattgggaaaattactgttatttggaaaaaaacaacattcacgaaaaactcatcacattttgcttttctgtttctttgttCTCTCACAC--CAC-ATTTTGGGAGT-G-GGACT----GGAGCCA-TTCA-A-T--TGGG-AAAAT----GACCG-T-CA---T-TTGGGG-GA-AATT--GAG-------AAA-----AA--C-AAC--A-TTC--AC-----A-CTC-ATAAAAT-TTTGCTTTTCTATTGTTT
gi|13 : c-TTC-TATTGT-TTAATT---G-GCAAAAGA---A--GTATT-TTATTTCCA--A--T-TGAGAATGGGGCT-GTTCAA--GTG-TCCCATTTAT-AGAGATT----CGAGAGCCCTGaattggcaaaagaagtattttatttccaattgagaatggggctgttcaagtgtcccatttatagagattcgagagccctgtac
gi|15 : cctctcacaccacattttgggagtgggactggagccattcaattgggaaaatgaccgtcatttgggggaaattgagaaaaacaacattcacactcataaaattttgcttGGGAAT-A-GGGCT----G---CTG----A-AAC--AGGA-AAAAT----TACTG-G-GG-T-T-TTTGT--AA-GATT---------------------------AC--A-TTC---TTAAGAA-CTC-AACAAAT-TTTGTTTTTCTCTT---TG-GTTTTCGATTTA-------T------GG----------------TTT----TCTA------TA-CA--C--AATT-----T-ATAC------------ATG-GTA-AGT--T----------T-ATTAT----AGATATCCAAA---AAT--CTGC-Ctac
gi|16 : T--T----------T-ATTTT----GAATATCCAAA---ACT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------GGA-A--------------A-AAATC---------AATGAA-TTC--ATTTT-T--------G-GGAAAAG------GGTTCC-TT-TTCTCA--A--T-TGGAAATGGGGCC-CTTCAA--TGA-CCCCATTTAC-AGAGAAT----TGAGAGCCCTG
gi|17 : CTTTCACAC--CAC-TTTTTGGGAATAG-GGGGC----AGGGTCG-TTCA-AAG--TGGT-ATAAT----TACAG-T-AA-TGT-TTG-------------G-G-------AAA-----AA--C-AAC--A--TC--AACAAAAA-CTC-A--AAAT-T
gi|17 : -AAATT------GGGAA--AA-TTC-CACTTT-TAgggaaaattccactttta
gi|18 : ctttcacaccactttttgggaatagggggcagggtcgttcaaagtggtataattacagtaatgtttgggaaaaacaacatcaacaaaaactcaGGGCTCTCACAC--CAC-TTTTAGTGAAT-G-GGACC----GGGGCCG-TTCA-AAT--TGCT-AAAAT----AACAG-A-TA-T-T-TT-TGA-AA-AATTTGG-G-------GAA-----AA--C-GAC--A-ATC--ACCAAAAA-TTC-ATCAAAT-T
gi|19 : AAGGG-AAACT------GGGAA--AA-TTC-CACTTT-TAA-TT---G-G--AAAAA---AGGGTACC-TT-TTTCCA--A--C-TGGGAACGG-----------------CCCCACTTAA-AGAGAAT----CAACAGCCCTa
gi|2 : GGGCTCTTGCAC--CAC-TTTTTGGGACT-G-GGGC----------------A-AAT--------AAAC----GAC------A-T-T-TTGGGGGAA-AATT--A-GC------AAATGATTAATCC-AAC--A-TTT--ACAAAAAAGCTA-AACAA-C-TTTGGTTTTCTGGAGATTT-GTTATCAATTT------------T--GG----------------TTTACAAT--A------TA-CA--T--A--------T-A-AC------------AAATGTGCAGT--TGTTTTTTTGTT-GTTTT----TTTTATCTATG---TGT--GTGTGTCTTGTTGATTTTT-AAAA-------------AAA-A-TATTTTTATGCAGA-AAATT------GGGCG--T--TTCACACTTTCTCAATA---G-G---AAAA---TAGGTTCT-TT-TTTTGC--A--T-TGGGAATGGGACA-GTTCAA--TGGCCCCCAATTATAAGAGAAT----CGAGAGCCCTG
gi|20 : -CACCTT-TAAATT---A-GGAAAAAG-----GGTACC-TT-TTTTCA--A--T-TAGGAACAGGGCC-GTTCAA--CGG-CCCCATTTAC-AGAGAAT----CGAAAGCCCTGatt
gi|21 : AATT---G-G----AAA---AAGGTACCTTT-TTTCCC--A--T-TTTGAAC--GGCC----C----CAG-CCCCATTCCC-CAAAAGTGGTGTGAGAGCCCTGac
gi|21 : GGGCTCTCACAC--CAC-TTTTGGGGAAT-G-GGGCT----GGGGCCG-TTCA-AAA--TGGG-AAAAgggaatagg
gi|21 : caTT-CAAAAT---G-GGAAAA-----AAGGTACC-TT-TTTCCA--A--T-TGGGAATAGGaaggtacctttttccaattgggaatagg
gi|22 : cagggctctcacaccacttttggggaatggggctggggccgGCTCTCAAAC--CTTGTTTTTGGGAAT-G-GGGCC----AGGATTG-TTCA-AAA--TGGG-GAAAT----TACCA-T-CA-T-A-TTTGGG-AA-AATT--
gi|23 : GGGCTTTCACAC--CAC-ATTATGGGAATCGCGGGCT----GGGACAG-TTCA-AAT--TGGG-AAAAT----TTCCA-T-TA---T-TTGGGG-A
gi|25 : GCTCTCCCAC--CAC-TTTTAGGGAAT-G-GGACC----AAGGCCA-TTCA-AAT--TGGG-AAAAG----TATCG-T-Tta
gi|26 : a-TTTTTGGGAAT-G-GGGCC----GGGGCC---TCA-AAT--TGGT--AAAT----TA--G-T-TA-T-T-C---GG-AATAATT--A-G-------
gi|27 : AGATT---G-GGAAAA-----AAGGTACC-TT-TATCCA--G--T-TGGGTATAGGGTC-GTTCA
gi|28 : aTAC-AGAGAAT----CGAAAGCCCTGg
gi|3 : TCTCGCAC--CAC-TGTTTGGGAAT-G-GGGCA----GAGGCTG-TTCA-TAT--TGGGGAAAAT----TATCG-T-TA-T-T-TTAGGG-AA-AATT--G-G-------GGG-----GG--G-GGGGGA-TTT--ACGAAAAA-CTT-ATAAAAAATTTGCTTTTCTATTGTTTT-G----------A-------T------GA----------------TTC----TGGA------TA-CA--C--A--------T-G----------------TA-GTA-AAT--T----------T-ATTTT----AGATATCCAAA---AAT--CTAT-CCTTAATG-TTCAT-GAAATACTTT-------ATA-A-TTTTTCTCTAAGGG-AAATA------GGGAA--AA-TTC-TACTTT-TAAATT---G-GG-GAAAA---AAGGTACT-GT-TTTCTA--A--T-TGGGAATGGAACC-ATTCAG--TAG-CCTCATTTGT-AGAGAAT----TGAGAGCCCTGacattgtgt
gi|4 : GGGCTCTCGCAC--CAC-ATTTTGGG--------GCA----GGGGCCG-ATCA-GAT--TGGG-AAAAT----T--CG-G-CA-T-T-TGGGGG-AA-AATT--G-GGA-----AAA-----AA--CTAAC--ATTTT--AATAAAAG-CTT-AACAAA--TTTGGTTTTCTAGAGATTT-GTTATCAAT----------TT--T--GG----------------TTT----ACAA------TA-CA--CATA--------T-A-ACAA----------ACG-GC--AGTTCT----------T-GTTTT-----GATTT---------AT--GTGT------ATG-TTT-T-GTTTTGTTTT-------AAATA-TTTTTC--TGCAGA-AAATT------GGAGA--AA-TTCACACTTC-TCAGTT---A-GG-AAGAA---AAGGTACC-TT-TTTTGC--A--T-TTGGAACGGGGCT-GTTCAA--CAG-CCCTAATTAT-AGAGAAC----CGAGAGCCCTGac
gi|5 : TCTTACAC--CAC-GTTTTGGAAAT-G-GGGCC----CGGGTCG-TTCAGAAT--TTGA-AAAAT----TACTG-TATA-T-T-TTGGGG-AA-ATTG--G-G-------AAA-----AA--C-AAC--A-CTC--ACACAAAA-ATC-ATAAAAT-TTTGCTTTTCTATTGCTTT-GT---------A-------T------GC----------------TCT----TGGA------TA-CA--C--A--------T-A-AC------------ATA-AGA-AGT--T----------T-ATTTTTTTCAAATATCCACA---AAT--GTGT-CCTTAATG-TTCAT-GAAG-----------------A-TTTTTCAATAAGGG-ATATT------GGGAA--AA-TTC-CACTTT-TAAA-------------AA---AAGGTACC-TT-TTTTCA--A--T-TGGGAATGGGGCT-GATCAA--CAG-CCCCATCTAT-AGAGAAT----CGAAAACTCTGt
gi|6 : GGAT-G-GGGCCC---GGGGCCAATTCA-AAT--TGGT-AAAATA---TA--G-T-TA-T-T-TTGGGA-CT-AATT--G-G-------GAA-----AA--C-TAA--A-TTCTAACAAAAAAACT------AAT-TTTGGTTTTCT-TTGTTTT-GTTTTCA-TTTA-------TA--T-------------------------------------TA-CA--T--G--------TTA-AC------------ACA-TTA-AGT--T----------TTACTTT----AAATATCCAAA---AAC--TGGT-CCTTTATG-TTCAT-GAAATACTCCCCCAAAAAAA-A-T----CGATAAGAG-AAATT------GGGAA--AAATTC-CACTTT-TAAATT---G-AGGAAAAA---G-GGTGCC-TT-TTTCCA--A--A-TGGGAATGCGTAT-GTTCAG--CAG-CCCCATTTAT-AGAAAAT----CAAGAGCCCTG
gi|7 : -G-GGGTT----GGGGTCG-CTCA-GAC--TGGT-AAAAT----TACAG-G-TA-T-T-TAGGGG-AA-AATT--T-GTATTACTAAA-----AA--T-AAC--T-TTT--ATAAAATA-TTC-ATAAGAT----------CTATTGTCTTAGATTT--ATTTA-------T------AA----------------TTT----TGGACACATTTA-CA--C--G--------T-A-AC------------ACA-GTA-AAT--T----------T-ATTCC----AAATATTAAAA---AAT--CTGC-CCTTAATT-TTCA--AAAATGCTCA-------AAA-A-TTTTTCGATAAGGG-AAATTTGGAAAAGGAA--AA-TTT-CACT-------TC---G-GG--TAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAATGGGGCCTGTTCAA--a
gi|8 : TTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--
gi|8 : aaa-GTA-AGT--T----------T-GTTTT----AGATATCCAAA---AG---CTGT-CCCTAATG-TTCATTGAAA-GCTCTTGTT---A------TTTTCGATAAGGG-AAAGG------GGGTA--AA-TTC-CACTTT-TAAATT-----GGAGGAAA---AAGGTACC-TT-TTTCCA--ATTT-TGGGAATGGGTCA-ATTCAA--CGG-CCTCATTTAT-AGAGAAT----CGAGATCCCTGtagatttcaatattgtaagtttgttttagatatccaaaagctgtccctaatgttcattgaaagctcttgttattttcgataagggaaagggggtaaattccacttttaaattggaggaaaaaggtacctttttccaattttgggaatgggtcaattcaacggcctcatttatagagaatcgagatccctg
gi|9 : aaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaatagatttcaatattTCTTACAC--CAC-TCTTTGG-AAT-G-GGGCC----AGGGCCA-TTCA-AAT--AGGG-AAACTGTAATACTGGT-TAAT-T-TTGGGG-GA-AA-----------------------A--C-AAC--A-TTC--ACAAAAAA-CTC-ATCAAAT-TCTGCTTTTCTGTTGTTTT-GTTTTCAA------------T--T--GG----------------TTT----TGGA------TC-CA--T--A--------
gi|9 : tctaT-CCATAATG-TTCAT-GAAATGCTCT-------AAG-ATTTTTTTGAT-AGGG-ATATT------GGGAA--AA-TTC-CACT-------------------------------CC-TT-TTTGCA--A--A-TGGAAATGGGACC-ATTAAACGCGG-CCCCATTTCT-AGAGAAT----CACGAGCCCTGatgttcatgaaatgctctaagatttttttgatagggatattgggaaaattccactcctttttgcaaatggaaatgggaccattaaacgcggccccatttctagagaatcacgagccctga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAATATTGGGAATTTAGCAGCTTATTTTTGGGGAAATTATTTGATCAATCCAACATTTTAAAAAAATGAAAAAATTTGTTAATCAATTGGTTTTGGGTTTGTCAGATACAGCATAATAAGCGATTAACGTACGGTTCGTTTCTTGTTTTTGATTTTAAGTGTGTGTTTTGTTTTGTTTTTTTTTC
Unaligned ( gi|24 ): CTACAAAGCAGCTTATTAATATATTATTAAATTGAAAAATAAAAAGTATTCTACAAATAGAA
Alignments
lowQualScore : 222222222222 444444444444444444444444444444444444 1111 33333333333333333333333333 1111111111 1111111
lowQualScore : 2 33 2 4 2 6666 2 2 22 2 6666 4 2 2 2 2 2 1 2 2 111111111111 77777 33 2 33 2 33 6 5 2 22 2 0 3 777777777777777777777777777777777777 0000 2 999999 3 55 55 00000000000000000000000000 3 3 44 4444444444 3 88888 555 44 3 3 3 6 9999999 444 666 66 5 888888 33 2 4 2 1 99999999 88888 2 2 55 22 2 0 33 33 2 2 5555
lowQualScore : . .. . . . .... . . .. . .... . . . . . . . . . ............ ..... .. . .. . .. . . . .. . . . .................................... .... . ...... . .. .. .......................... . . .. .......... . ..... ... .. . . . . ....... ... ... .. . ...... .. . . . . ........ ..... . . .. .. . . .. .. . . ....
lowQualScore : 3 77 5 2 1 6666 1 1 99 1 9999 2 2 2 4 4 4 2 4 5 000000000000 11111 99 9 99 9 99 6 7 9 55 7 1 3 333333333333333333333333333333333333 4444 5 666666 6 00 00 99999999999999999999999999 6 6 66 6666666666 3 11111 888 66 1 3 6 7 5555555 111 000 22 7 222222 99 5 7 2 3 44444444 55555 1 1 88 99 1 1 66 22 9 7 7777
consensus : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
Reference ( family-68 ) : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
gi|1 : GGGCTCTTGCAC--CAC-TTGTAGGGAAT-G-GGGCC----GGGGCTG-TTCA-AATGGTGGG-AAAAT----TATTA-T-TA-T-A-TAGGTG-AA-AATT--G-A-------AAA-----AA--C-AAC--A-TCC--ACTAAATA-CTC-GTCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--TAGGG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AAT--T----------T-ATTTT----AAGTATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTGT-------AAT-A-TTTTTCATTAAGGG-AAATT------AGGAA--AA-TTC-AAGTTT-TAAATT---A-GGAAAAAA---AAGGTACT-TT-TTTC----A--TATGGGAACGGGGCC-CTTTAA--CGG-CCCCATTTAG-AGAGAAT----GGAGAGCCCTG
gi|10 : T-TTTGCTTTTGTATTATTTT-GTTTTCAATTTAATCTAGTTT--T--GGGTACACATGAGTTTATTTC----TTGA------TATCATTC--AATAGATCTT-G-AT------------ATT-GCA-AGT--T----------T-ATTTT----GAATAT---AATTTAATAGCTGT-TCTTAATG-TTCAT-GAAAAGTTCT-------AAA-A-AATTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--c
gi|11 : GGCCCTCACAC--AAC-CTTTTTGGAAT-G-GGGCCCGTGGGGGCCT-TTCA-AAT--TTGG-AAAAT----TACCA-T-TA-T-TATTGGG---------------------AAA-----AA--C-AAC--A-TTC--AC-AAAAA-CTCAATCAAAT-TTTGCTTTTCTATTGTTTG-GTTTTCAATTCA-------TTTAT--GG----------------TTT----TGAA------TA-CA--C--A--------G-A-ACTTCAACATGTGTACA-GTA-AGT--T----------T-ATTTT----GAATATCCAAA---AAT--CTGT-CCTTAATG-TTCA
gi|12 : GGCTCTCACACTGCAC-TTTTTGGGAAT-T-GGGCC----GGAGCCG-TTCA-AAT--TGGG-AAAAT----TACTG-T-TA-T-T-T---GG-AA-----------------AAA-----AA--C-AAC--A-TTC--ACGAAAAA-CTC-ATCACAT-TTTGCTTTTCTGTTTCTTT-GTTTTCAACTT--------TT--C--GA----------------TTTA---TGGA------
gi|12 : -TTC-AACTTT-TCGATTTATG-GAAAAAAG---GTAGTACC-TT-TTTCCA--T--T-TGGGAATGGAGCT-GTTCAA--TGG-CCCTATTCAT-AGAGAAT----CGAGAGCTCTaaaaaggtagtacctttttccatttgggaatggagctgttcaatggccctattcatagagaatcgagagctct
gi|13 : ggctctcacactgcactttttgggaattgggccggagccgttcaaattgggaaaattactgttatttggaaaaaaacaacattcacgaaaaactcatcacattttgcttttctgtttctttgttCTCTCACAC--CAC-ATTTTGGGAGT-G-GGACT----GGAGCCA-TTCA-A-T--TGGG-AAAAT----GACCG-T-CA---T-TTGGGG-GA-AATT--GAG-------AAA-----AA--C-AAC--A-TTC--AC-----A-CTC-ATAAAAT-TTTGCTTTTCTATTGTTT
gi|13 : c-TTC-TATTGT-TTAATT---G-GCAAAAGA---A--GTATT-TTATTTCCA--A--T-TGAGAATGGGGCT-GTTCAA--GTG-TCCCATTTAT-AGAGATT----CGAGAGCCCTGaattggcaaaagaagtattttatttccaattgagaatggggctgttcaagtgtcccatttatagagattcgagagccctgtac
gi|15 : cctctcacaccacattttgggagtgggactggagccattcaattgggaaaatgaccgtcatttgggggaaattgagaaaaacaacattcacactcataaaattttgcttGGGAAT-A-GGGCT----G---CTG----A-AAC--AGGA-AAAAT----TACTG-G-GG-T-T-TTTGT--AA-GATT---------------------------AC--A-TTC---TTAAGAA-CTC-AACAAAT-TTTGTTTTTCTCTT---TG-GTTTTCGATTTA-------T------GG----------------TTT----TCTA------TA-CA--C--AATT-----T-ATAC------------ATG-GTA-AGT--T----------T-ATTAT----AGATATCCAAA---AAT--CTGC-Ctac
gi|16 : T--T----------T-ATTTT----GAATATCCAAA---ACT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------GGA-A--------------A-AAATC---------AATGAA-TTC--ATTTT-T--------G-GGAAAAG------GGTTCC-TT-TTCTCA--A--T-TGGAAATGGGGCC-CTTCAA--TGA-CCCCATTTAC-AGAGAAT----TGAGAGCCCTG
gi|17 : CTTTCACAC--CAC-TTTTTGGGAATAG-GGGGC----AGGGTCG-TTCA-AAG--TGGT-ATAAT----TACAG-T-AA-TGT-TTG-------------G-G-------AAA-----AA--C-AAC--A--TC--AACAAAAA-CTC-A--AAAT-T
gi|17 : -AAATT------GGGAA--AA-TTC-CACTTT-TAgggaaaattccactttta
gi|18 : ctttcacaccactttttgggaatagggggcagggtcgttcaaagtggtataattacagtaatgtttgggaaaaacaacatcaacaaaaactcaGGGCTCTCACAC--CAC-TTTTAGTGAAT-G-GGACC----GGGGCCG-TTCA-AAT--TGCT-AAAAT----AACAG-A-TA-T-T-TT-TGA-AA-AATTTGG-G-------GAA-----AA--C-GAC--A-ATC--ACCAAAAA-TTC-ATCAAAT-T
gi|19 : AAGGG-AAACT------GGGAA--AA-TTC-CACTTT-TAA-TT---G-G--AAAAA---AGGGTACC-TT-TTTCCA--A--C-TGGGAACGG-----------------CCCCACTTAA-AGAGAAT----CAACAGCCCTa
gi|2 : GGGCTCTTGCAC--CAC-TTTTTGGGACT-G-GGGC----------------A-AAT--------AAAC----GAC------A-T-T-TTGGGGGAA-AATT--A-GC------AAATGATTAATCC-AAC--A-TTT--ACAAAAAAGCTA-AACAA-C-TTTGGTTTTCTGGAGATTT-GTTATCAATTT------------T--GG----------------TTTACAAT--A------TA-CA--T--A--------T-A-AC------------AAATGTGCAGT--TGTTTTTTTGTT-GTTTT----TTTTATCTATG---TGT--GTGTGTCTTGTTGATTTTT-AAAA-------------AAA-A-TATTTTTATGCAGA-AAATT------GGGCG--T--TTCACACTTTCTCAATA---G-G---AAAA---TAGGTTCT-TT-TTTTGC--A--T-TGGGAATGGGACA-GTTCAA--TGGCCCCCAATTATAAGAGAAT----CGAGAGCCCTG
gi|20 : -CACCTT-TAAATT---A-GGAAAAAG-----GGTACC-TT-TTTTCA--A--T-TAGGAACAGGGCC-GTTCAA--CGG-CCCCATTTAC-AGAGAAT----CGAAAGCCCTGatt
gi|21 : AATT---G-G----AAA---AAGGTACCTTT-TTTCCC--A--T-TTTGAAC--GGCC----C----CAG-CCCCATTCCC-CAAAAGTGGTGTGAGAGCCCTGac
gi|21 : GGGCTCTCACAC--CAC-TTTTGGGGAAT-G-GGGCT----GGGGCCG-TTCA-AAA--TGGG-AAAAgggaatagg
gi|21 : caTT-CAAAAT---G-GGAAAA-----AAGGTACC-TT-TTTCCA--A--T-TGGGAATAGGaaggtacctttttccaattgggaatagg
gi|22 : cagggctctcacaccacttttggggaatggggctggggccgGCTCTCAAAC--CTTGTTTTTGGGAAT-G-GGGCC----AGGATTG-TTCA-AAA--TGGG-GAAAT----TACCA-T-CA-T-A-TTTGGG-AA-AATT--
gi|23 : GGGCTTTCACAC--CAC-ATTATGGGAATCGCGGGCT----GGGACAG-TTCA-AAT--TGGG-AAAAT----TTCCA-T-TA---T-TTGGGG-A
gi|25 : GCTCTCCCAC--CAC-TTTTAGGGAAT-G-GGACC----AAGGCCA-TTCA-AAT--TGGG-AAAAG----TATCG-T-Tta
gi|26 : a-TTTTTGGGAAT-G-GGGCC----GGGGCC---TCA-AAT--TGGT--AAAT----TA--G-T-TA-T-T-C---GG-AATAATT--A-G-------
gi|27 : AGATT---G-GGAAAA-----AAGGTACC-TT-TATCCA--G--T-TGGGTATAGGGTC-GTTCA
gi|28 : aTAC-AGAGAAT----CGAAAGCCCTGg
gi|3 : TCTCGCAC--CAC-TGTTTGGGAAT-G-GGGCA----GAGGCTG-TTCA-TAT--TGGGGAAAAT----TATCG-T-TA-T-T-TTAGGG-AA-AATT--G-G-------GGG-----GG--G-GGGGGA-TTT--ACGAAAAA-CTT-ATAAAAAATTTGCTTTTCTATTGTTTT-G----------A-------T------GA----------------TTC----TGGA------TA-CA--C--A--------T-G----------------TA-GTA-AAT--T----------T-ATTTT----AGATATCCAAA---AAT--CTAT-CCTTAATG-TTCAT-GAAATACTTT-------ATA-A-TTTTTCTCTAAGGG-AAATA------GGGAA--AA-TTC-TACTTT-TAAATT---G-GG-GAAAA---AAGGTACT-GT-TTTCTA--A--T-TGGGAATGGAACC-ATTCAG--TAG-CCTCATTTGT-AGAGAAT----TGAGAGCCCTGacattgtgt
gi|4 : GGGCTCTCGCAC--CAC-ATTTTGGG--------GCA----GGGGCCG-ATCA-GAT--TGGG-AAAAT----T--CG-G-CA-T-T-TGGGGG-AA-AATT--G-GGA-----AAA-----AA--CTAAC--ATTTT--AATAAAAG-CTT-AACAAA--TTTGGTTTTCTAGAGATTT-GTTATCAAT----------TT--T--GG----------------TTT----ACAA------TA-CA--CATA--------T-A-ACAA----------ACG-GC--AGTTCT----------T-GTTTT-----GATTT---------AT--GTGT------ATG-TTT-T-GTTTTGTTTT-------AAATA-TTTTTC--TGCAGA-AAATT------GGAGA--AA-TTCACACTTC-TCAGTT---A-GG-AAGAA---AAGGTACC-TT-TTTTGC--A--T-TTGGAACGGGGCT-GTTCAA--CAG-CCCTAATTAT-AGAGAAC----CGAGAGCCCTGac
gi|5 : TCTTACAC--CAC-GTTTTGGAAAT-G-GGGCC----CGGGTCG-TTCAGAAT--TTGA-AAAAT----TACTG-TATA-T-T-TTGGGG-AA-ATTG--G-G-------AAA-----AA--C-AAC--A-CTC--ACACAAAA-ATC-ATAAAAT-TTTGCTTTTCTATTGCTTT-GT---------A-------T------GC----------------TCT----TGGA------TA-CA--C--A--------T-A-AC------------ATA-AGA-AGT--T----------T-ATTTTTTTCAAATATCCACA---AAT--GTGT-CCTTAATG-TTCAT-GAAG-----------------A-TTTTTCAATAAGGG-ATATT------GGGAA--AA-TTC-CACTTT-TAAA-------------AA---AAGGTACC-TT-TTTTCA--A--T-TGGGAATGGGGCT-GATCAA--CAG-CCCCATCTAT-AGAGAAT----CGAAAACTCTGt
gi|6 : GGAT-G-GGGCCC---GGGGCCAATTCA-AAT--TGGT-AAAATA---TA--G-T-TA-T-T-TTGGGA-CT-AATT--G-G-------GAA-----AA--C-TAA--A-TTCTAACAAAAAAACT------AAT-TTTGGTTTTCT-TTGTTTT-GTTTTCA-TTTA-------TA--T-------------------------------------TA-CA--T--G--------TTA-AC------------ACA-TTA-AGT--T----------TTACTTT----AAATATCCAAA---AAC--TGGT-CCTTTATG-TTCAT-GAAATACTCCCCCAAAAAAA-A-T----CGATAAGAG-AAATT------GGGAA--AAATTC-CACTTT-TAAATT---G-AGGAAAAA---G-GGTGCC-TT-TTTCCA--A--A-TGGGAATGCGTAT-GTTCAG--CAG-CCCCATTTAT-AGAAAAT----CAAGAGCCCTG
gi|7 : -G-GGGTT----GGGGTCG-CTCA-GAC--TGGT-AAAAT----TACAG-G-TA-T-T-TAGGGG-AA-AATT--T-GTATTACTAAA-----AA--T-AAC--T-TTT--ATAAAATA-TTC-ATAAGAT----------CTATTGTCTTAGATTT--ATTTA-------T------AA----------------TTT----TGGACACATTTA-CA--C--G--------T-A-AC------------ACA-GTA-AAT--T----------T-ATTCC----AAATATTAAAA---AAT--CTGC-CCTTAATT-TTCA--AAAATGCTCA-------AAA-A-TTTTTCGATAAGGG-AAATTTGGAAAAGGAA--AA-TTT-CACT-------TC---G-GG--TAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAATGGGGCCTGTTCAA--a
gi|8 : TTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--
gi|8 : aaa-GTA-AGT--T----------T-GTTTT----AGATATCCAAA---AG---CTGT-CCCTAATG-TTCATTGAAA-GCTCTTGTT---A------TTTTCGATAAGGG-AAAGG------GGGTA--AA-TTC-CACTTT-TAAATT-----GGAGGAAA---AAGGTACC-TT-TTTCCA--ATTT-TGGGAATGGGTCA-ATTCAA--CGG-CCTCATTTAT-AGAGAAT----CGAGATCCCTGtagatttcaatattgtaagtttgttttagatatccaaaagctgtccctaatgttcattgaaagctcttgttattttcgataagggaaagggggtaaattccacttttaaattggaggaaaaaggtacctttttccaattttgggaatgggtcaattcaacggcctcatttatagagaatcgagatccctg
gi|9 : aaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaatagatttcaatattTCTTACAC--CAC-TCTTTGG-AAT-G-GGGCC----AGGGCCA-TTCA-AAT--AGGG-AAACTGTAATACTGGT-TAAT-T-TTGGGG-GA-AA-----------------------A--C-AAC--A-TTC--ACAAAAAA-CTC-ATCAAAT-TCTGCTTTTCTGTTGTTTT-GTTTTCAA------------T--T--GG----------------TTT----TGGA------TC-CA--T--A--------
gi|9 : tctaT-CCATAATG-TTCAT-GAAATGCTCT-------AAG-ATTTTTTTGAT-AGGG-ATATT------GGGAA--AA-TTC-CACT-------------------------------CC-TT-TTTGCA--A--A-TGGAAATGGGACC-ATTAAACGCGG-CCCCATTTCT-AGAGAAT----CACGAGCCCTGatgttcatgaaatgctctaagatttttttgatagggatattgggaaaattccactcctttttgcaaatggaaatgggaccattaaacgcggccccatttctagagaatcacgagccctga
blockSeqs : A TG G A C CGTG A G . G GTAA C G A A G A T G T TGTATTACT TGATT TC T GG T TA G G A TC A A TTTAATCTAGTTTTGGGTACACATGAGTTTAT ACAA T CACATT T TT AT GAACTTCAACATGTGT T C TC GTTTTTTTGT T TTTCA TTT AG G A T A CCCAAAA AAT TTT GC T TGGAAA TG A A C A TATGGAA GTTAA T A AT TT . TG CG C A GGTG
blockSeqs : A . . C . C . . . . A T . . . . . T . . TGGG . . . . . . T A . TC . . TTCATTTATGG A G . . . . ATAGATCTTGAT . . . . . G . . . . . T TGTT AA AA TA T . . . A . C GAAGA GTTAA . . AT . . A . . . .
blockSeqs : A . . . . . . . . . . C . . . . . T . . GGGA . . . . . . C . . TA . . CTTTTCGA . G . . . . ATTTATAC . . . . . G . . . . . T . GA TA TC . . . . . . T GAAGA GT . . . . . G . . . .
blockSeqs : A . . . . . . . . . . T . . . . . T . . GAG . . . . . . C . . AC . . TTTATGG . C . . . . TAACAA . . . . . A . . . . . T . AA TT AA . . . . . . A GGCA AG . . . . . G . . . .
blockSeqs : A . . . . . . . . . . A . . . . . T . . AGC . . . . . . A . . TC . . TTTATAT . G . . . . TTAAC . . . . . G . . . . . T . TA TT GA . . . . . . A GGGA TA . . . . . C . . . .
blockSeqs : G . . . . . . . . . . A . . . . . T . . GG . . . . . . G . . AC . . TTTATAA . C . . . . TAAC . . . . . T . . . . . T . AA TT GA . . . . . . C AGGA AA . . . . . G . . . .
blockSeqs : A . . . . . . . . . . C . . . . . T . . AG . . . . . . T . . TA . . TTTTGG . G . . . . TAAC . . . . . A . . . . . T . AA TT GC . . . . . . A GGGA AA . . . . . G . . . .
blockSeqs : A . . . . . . . . . . C . . . . . T . . GG . . . . . . A . . AC . . TTTTGG . G . . . . TAAC . . . . . A . . . . . . . AG T GA . . . . . . A GGGA AA . . . . . G . . . .
blockSeqs : A . . . . . . . . . . C . . . . . T . . GG . . . . . . A . . TA . . ATGA . G . . . . TG . . . . . A . . . . . . . . T GA . . . . . . A GAGG AA . . . . . A . . . .
blockSeqs : C . . . . . . . . . . C . . . . . G . . GG . . . . . . A . . TA . . ATGC . . . . . . . . . . . A . . . . . . . . . . . . . . . . A GGG AA . . . . . G . . . .
blockSeqs : G . . . . . . . . . . C . . . . . T . . . . . . . . . A . . TC . . TTGG . . . . . . . . . . . . . . . . . . C AGG AA . . . . . G . . . .
blockSeqs : G . . . . . . . . . . T . . . . . T . . . . . . . . . . . . . . . . . . . . . A GGG AA . . . . . G . . . .
blockSeqs : A . . . . . . . . . . A . . . . . A . . . . . . . . . . . . . . . . . . . . A GGA AA . . . . . A . . . .
blockSeqs : A . . . . . . . . . . T . . . . . T . . . . . . . A GG A . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A GG G . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . GG . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons : ** TTTATGG*****************************
originalCons : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTA-------TT--T--GG----------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
finalCons : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCAATTTATGG-----------------------------TTT----TGGA------TA-CA--C--A--------T-A-AC------------ACA-GTA-AGT--T----------T-ATTTT----AAATATCCAAA---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAATATTGGGAATTTAGCAGCTTATTTTTGGGGAAATTATTTGATCAATCCAACATTTTAAAAAAATGAAAAAATTTGTTAATCAATTGGTTTTGGGTTTGTCAGATACAGCATAATAAGCGATTAACGTACGGTTCGTTTCTTGTTTTTGATTTTAAGTGTGTGTTTTGTTTTGTTTTTTTTTC
Unaligned ( gi|24 ): CTACAAAGCAGCTTATTAATATATTATTAAATTGAAAAATAAAAAGTATTCTACAAATAGAA
Alignments
lowQualScore : 222222222222 1111 222222222222222222222 1111111111 1111111
lowQualScore : 2 33 2 4 2 6666 2 2 22 2 6666 4 2 2 2 2 2 1 2 2 111111111111 77777 33 2 33 2 33 6 5 2 22 2 0 3 9999999999999 7777 0 0000 2 999999 55 666666666666666666666 3 3 44 3333333333 3 3 88888 555 3 555 44 3 3 3 6 9999999 444 666 66 5 888888 33 2 4 2 1 99999999 88888 2 2 55 22 2 0 33 33 2 2 5555
lowQualScore : . .. . . . .... . . .. . .... . . . . . . . . . ............ ..... .. . .. . .. . . . .. . . . ............. .... . .... . ...... .. ..................... . . .. .......... . . ..... ... . ... .. . . . . ....... ... ... .. . ...... .. . . . . ........ ..... . . .. .. . . .. .. . . ....
lowQualScore : 3 77 5 2 1 6666 1 1 99 1 9999 2 2 2 4 4 4 2 4 5 000000000000 11111 99 9 99 9 99 6 7 9 55 7 1 3 8888888888888 1111 2 4444 5 666666 00 999999999999999999999 3 3 22 5555555555 1 1 88888 444 1 444 22 1 3 6 7 5555555 111 000 22 7 222222 99 5 7 2 3 44444444 55555 1 1 88 99 1 1 66 22 9 7 7777
consensus : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCA----A-TTTA---T----GGTTT----TGGA------TACAC--A---T-A-AC------------ACA-GTA-AGT--T----------T-ATTT-T----AGATATC---CAA-A---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
Reference ( family-68 ) : GGGCTCTCGCAC--CAC-TTTTTGGGAAT-G-GGGCC----GGGGCCG-TTCA-AAT--TGGG-AAAAT----TACCG-T-TA-T-T-TTGGGG-AA-AATT--G-G-------AAA-----AA--C-AAC--A-TTC--ACNAAAAA-CTC-ATCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCA----A-TTTA---T----GGTTT----TGGA------TACAC--A---T-A-AC------------ACA-GTA-AGT--T----------T-ATTT-T----AAATATC---CAA-A---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------AAA-A-TTTTTCGATAAGGG-AAATT------GGGAA--AA-TTC-CACTTT-TAAATT---G-GGAAAAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAACGGGGCC-GTTCAA--CGG-CCCCATTTAT-AGAGAAT----CGAGAGCCCTG
gi|1 : GGGCTCTTGCAC--CAC-TTGTAGGGAAT-G-GGGCC----GGGGCTG-TTCA-AATGGTGGG-AAAAT----TATTA-T-TA-T-A-TAGGTG-AA-AATT--G-A-------AAA-----AA--C-AAC--A-TCC--ACTAAATA-CTC-GTCAAAT-TTTGCTTTTCTATTGTTTT-GTTTTCA----A-TTTA---TTTAGGGTTT----TGGA------TACAC--A---T-A-AC------------ACA-GTA-AAT--T----------T-ATTT-T----AAGTATC---CAA-A---AAT--CTGT-CCTTAATG-TTCAT-GAAATGCTGT-------AAT-A-TTTTTCATTAAGGG-AAATT------AGGAA--AA-TTC-AAGTTT-TAAATT---A-GGAAAAAA---AAGGTACT-TT-TTTC----A--TATGGGAACGGGGCC-CTTTAA--CGG-CCCCATTTAG-AGAGAAT----GGAGAGCCCTG
gi|10 : T-TTTGCTTTTGTATTATTTT-GTTTTCA----A-TTTAATCT----AGTTT----TGGG------TACAC--A--------------------------TG-AGT--T----------T-ATTTCT----TGATATCATTCAATA---GAT--CTc
gi|10 : -GCA-AGT--T----------T-ATTT-T----GAATAT------A-ATTTAATAGCTGT-TCTTAATG-TTCAT-GAAAAGTTCT-------AAA-A-AATTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--tgatattgcaagtttattttgaatataatttaatagctgttcttaatgttcatgaaaagttctaaaaaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaa
gi|11 : ttttgcttttgtattattttgttttcaatttaatctagttttgggtacacatgagtttatttcttgatatcattcaatagatcttgatattGGCCCTCACAC--AAC-CTTTTTGGAAT-G-GGGCCCGTGGGGGCCT-TTCA-AAT--TTGG-AAAAT----TACCA-T-TA-T-TATTGGG---------------------AAA-----AA--C-AAC--A-TTC--AC-AAAAA-CTCAATCAAAT-TTTGCTTTTCTATTGTTTG-GTTTTCAATTCA-TTTA---T----GGTTT----TGAA------TACAC--A---G-A-ACTTCAACATGTGTACA-GTA-AGT--T----------T-ATTT-T----GAATATC---CAA-A---AAT--CTGT-CCTTAATG-TTCA
gi|12 : GGCTCTCACACTGCAC-TTTTTGGGAAT-T-GGGCC----GGAGCCG-TTCA-AAT--TGGG-AAAAT----TACTG-T-TA-T-T-T---GG-AA-----------------AAA-----AA--C-AAC--A-TTC--ACGAAAAA-CTC-ATCACAT-TTTGCTTTTCTGTTTCTTT-GTTTTCA----ACTTTT---C----GATTTA---TGGA------
gi|12 : -TTC-AACTTT-TCGATTTATG-GAAAAAAG---GTAGTACC-TT-TTTCCA--T--T-TGGGAATGGAGCT-GTTCAA--TGG-CCCTATTCAT-AGAGAAT----CGAGAGCTCTaaaaaggtagtacctttttccatttgggaatggagctgttcaatggccctattcatagagaatcgagagctct
gi|13 : ggctctcacactgcactttttgggaattgggccggagccgttcaaattgggaaaattactgttatttggaaaaaaacaacattcacgaaaaactcatcacattttgcttttctgtttctttgttCTCTCACAC--CAC-ATTTTGGGAGT-G-GGACT----GGAGCCA-TTCA-A-T--TGGG-AAAAT----GACCG-T-CA---T-TTGGGG-GA-AATT--GAG-------AAA-----AA--C-AAC--A-TTC--AC-----A-CTC-ATAAAAT-TTTGCTTTTCTATTGTTT
gi|13 : c-TTC-TATTGT-TTAATT---G-GCAAAAGA---A--GTATT-TTATTTCCA--A--T-TGAGAATGGGGCT-GTTCAA--GTG-TCCCATTTAT-AGAGATT----CGAGAGCCCTGaattggcaaaagaagtattttatttccaattgagaatggggctgttcaagtgtcccatttatagagattcgagagccctgtac
gi|15 : cctctcacaccacattttgggagtgggactggagccattcaattgggaaaatgaccgtcatttgggggaaattgagaaaaacaacattcacactcataaaattttgcttGGGAAT-A-GGGCT----G---CTG----A-AAC--AGGA-AAAAT----TACTG-G-GG-T-T-TTTGT--AA-GATT---------------------------AC--A-TTC---TTAAGAA-CTC-AACAAAT-TTTGTTTTTCTCTT---TG-GTTTTCG----A-TTTA---T----GGTTT----TCTA------TACAC--AATTT-ATAC------------ATG-GTA-AGT--T----------T-ATTA-T----AGATATC---CAA-A---AAT--CTGC-Ctac
gi|16 : T--T----------T-ATTT-T----GAATATC---CAA-A---ACT--CTGT-CCTTAATG-TTCAT-GAAATGCTCT-------GGA-A--------------A-AAATC---------AATGAA-TTC--ATTTT-T--------G-GGAAAAG------GGTTCC-TT-TTCTCA--A--T-TGGAAATGGGGCC-CTTCAA--TGA-CCCCATTTAC-AGAGAAT----TGAGAGCCCTG
gi|17 : CTTTCACAC--CAC-TTTTTGGGAATAG-GGGGC----AGGGTCG-TTCA-AAG--TGGT-ATAAT----TACAG-T-AA-TGT-TTG-------------G-G-------AAA-----AA--C-AAC--A--TC--AACAAAAA-CTC-A--AAAT-T
gi|17 : -AAATT------GGGAA--AA-TTC-CACTTT-TAgggaaaattccactttta
gi|18 : ctttcacaccactttttgggaatagggggcagggtcgttcaaagtggtataattacagtaatgtttgggaaaaacaacatcaacaaaaactcaGGGCTCTCACAC--CAC-TTTTAGTGAAT-G-GGACC----GGGGCCG-TTCA-AAT--TGCT-AAAAT----AACAG-A-TA-T-T-TT-TGA-AA-AATTTGG-G-------GAA-----AA--C-GAC--A-ATC--ACCAAAAA-TTC-ATCAAAT-T
gi|19 : AAGGG-AAACT------GGGAA--AA-TTC-CACTTT-TAA-TT---G-G--AAAAA---AGGGTACC-TT-TTTCCA--A--C-TGGGAACGG-----------------CCCCACTTAA-AGAGAAT----CAACAGCCCTa
gi|2 : GGGCTCTTGCAC--CAC-TTTTTGGGACT-G-GGGC----------------A-AAT--------AAAC----GAC------A-T-T-TTGGGGGAA-AATT--A-GC------AAATGATTAATCC-AAC--A-TTT--ACAAAAAAGCTA-AACAA-C-TTTGGTTTTCTGGAGATTT-GTTATCA----A-TTT----T----GGTTTACAAT--A------TACAT--A---T-A-AC------------AAATGTGCAGT--TGTTTTTTTGTT-GTTT-T----TTTTATC---TAT-G---TGT--GTGTGTCTTGTTGATTTTT-AAAA-------------AAA-A-TATTTTTATGCAGA-AAATT------GGGCG--T--TTCACACTTTCTCAATA---G-G---AAAA---TAGGTTCT-TT-TTTTGC--A--T-TGGGAATGGGACA-GTTCAA--TGGCCCCCAATTATAAGAGAAT----CGAGAGCCCTG
gi|20 : -CACCTT-TAAATT---A-GGAAAAAG-----GGTACC-TT-TTTTCA--A--T-TAGGAACAGGGCC-GTTCAA--CGG-CCCCATTTAC-AGAGAAT----CGAAAGCCCTGatt
gi|21 : AATT---G-G----AAA---AAGGTACCTTT-TTTCCC--A--T-TTTGAAC--GGCC----C----CAG-CCCCATTCCC-CAAAAGTGGTGTGAGAGCCCTGac
gi|21 : GGGCTCTCACAC--CAC-TTTTGGGGAAT-G-GGGCT----GGGGCCG-TTCA-AAA--TGGG-AAAAgggaatagg
gi|21 : caTT-CAAAAT---G-GGAAAA-----AAGGTACC-TT-TTTCCA--A--T-TGGGAATAGGaaggtacctttttccaattgggaatagg
gi|22 : cagggctctcacaccacttttggggaatggggctggggccgGCTCTCAAAC--CTTGTTTTTGGGAAT-G-GGGCC----AGGATTG-TTCA-AAA--TGGG-GAAAT----TACCA-T-CA-T-A-TTTGGG-AA-AATT--
gi|23 : GGGCTTTCACAC--CAC-ATTATGGGAATCGCGGGCT----GGGACAG-TTCA-AAT--TGGG-AAAAT----TTCCA-T-TA---T-TTGGGG-A
gi|25 : GCTCTCCCAC--CAC-TTTTAGGGAAT-G-GGACC----AAGGCCA-TTCA-AAT--TGGG-AAAAG----TATCG-T-Tta
gi|26 : a-TTTTTGGGAAT-G-GGGCC----GGGGCC---TCA-AAT--TGGT--AAAT----TA--G-T-TA-T-T-C---GG-AATAATT--A-G-------
gi|27 : AGATT---G-GGAAAA-----AAGGTACC-TT-TATCCA--G--T-TGGGTATAGGGTC-GTTCA
gi|28 : aTAC-AGAGAAT----CGAAAGCCCTGg
gi|3 : TCTCGCAC--CAC-TGTTTGGGAAT-G-GGGCA----GAGGCTG-TTCA-TAT--TGGGGAAAAT----TATCG-T-TA-T-T-TTAGGG-AA-AATT--G-G-------GGG-----GG--G-GGGGGA-TTT--ACGAAAAA-CTT-ATAAAAAATTTGCTTTTCTATTGTTTT-G---------------A---T----GATTC----TGGA------TACAC--A---T-G----------------TA-GTA-AAT--T----------T-ATTT-T----AGATATC---CAA-A---AAT--CTAT-CCTTAATG-TTCAT-GAAATACTTT-------ATA-A-TTTTTCTCTAAGGG-AAATA------GGGAA--AA-TTC-TACTTT-TAAATT---G-GG-GAAAA---AAGGTACT-GT-TTTCTA--A--T-TGGGAATGGAACC-ATTCAG--TAG-CCTCATTTGT-AGAGAAT----TGAGAGCCCTGacattgtgt
gi|4 : GGGCTCTCGCAC--CAC-ATTTTGGG--------GCA----GGGGCCG-ATCA-GAT--TGGG-AAAAT----T--CG-G-CA-T-T-TGGGGG-AA-AATT--G-GGA-----AAA-----AA--CTAAC--ATTTT--AATAAAAG-CTT-AACAAA--TTTGGTTTTCTAGAGATTT-GTTATCA----A-TTT----T----GGTTT----ACAA------TACACATA---T-A-ACAA----------ACG-GC--AGTTCT----------T-GTTT-T-----GATTT-------------AT--GTGT------ATG-TTT-T-GTTTTGTTTT-------AAATA-TTTTTC--TGCAGA-AAATT------GGAGA--AA-TTCACACTTC-TCAGTT---A-GG-AAGAA---AAGGTACC-TT-TTTTGC--A--T-TTGGAACGGGGCT-GTTCAA--CAG-CCCTAATTAT-AGAGAAC----CGAGAGCCCTGac
gi|5 : TCTTACAC--CAC-GTTTTGGAAAT-G-GGGCC----CGGGTCG-TTCAGAAT--TTGA-AAAAT----TACTG-TATA-T-T-TTGGGG-AA-ATTG--G-G-------AAA-----AA--C-AAC--A-CTC--ACACAAAA-ATC-ATAAAAT-TTTGCTTTTCTATTGCTTT-GT--------------A---T----GCTCT----TGGA------TACAC--A---T-A-AC------------ATA-AGA-AGT--T----------T-ATTT-TTTTCAAATATC---CAC-A---AAT--GTGT-CCTTAATG-TTCAT-GAAG-----------------A-TTTTTCAATAAGGG-ATATT------GGGAA--AA-TTC-CACTTT-TAAA-------------AA---AAGGTACC-TT-TTTTCA--A--T-TGGGAATGGGGCT-GATCAA--CAG-CCCCATCTAT-AGAGAAT----CGAAAACTCTGt
gi|6 : GGAT-G-GGGCCC---GGGGCCAATTCA-AAT--TGGT-AAAATA---TA--G-T-TA-T-T-TTGGGA-CT-AATT--G-G-------GAA-----AA--C-TAA--A-TTCTAACAAAAAAACT------AAT-TTTGGTTTTCT-TTGTTTT-GTTTTCA------TTTA---T----A--------T---------TACAT--G---TTA-AC------------ACA-TTA-AGT--T----------TTACTT-T----AAATATC---CAA-A---AAC--TGGT-CCTTTATG-TTCAT-GAAATACTCCCCCAAAAAAA-A-T----CGATAAGAG-AAATT------GGGAA--AAATTC-CACTTT-TAAATT---G-AGGAAAAA---G-GGTGCC-TT-TTTCCA--A--A-TGGGAATGCGTAT-GTTCAG--CAG-CCCCATTTAT-AGAAAAT----CAAGAGCCCTG
gi|7 : -G-GGGTT----GGGGTCG-CTCA-GAC--TGGT-AAAAT----TACAG-G-TA-T-T-TAGGGG-AA-AATT--T-GTATTACTAAA-----AA--T-AAC--T-TTT--ATAAAATA-TTC-ATAAGAT----------CTATTGTCTTAGATTT------A-TTTA---T----AATTT----TGGACACATTTACAC--G---T-A-AC------------ACA-GTA-AAT--T----------T-ATTC-C----AAATATT---AAA-A---AAT--CTGC-CCTTAATT-TTCA--AAAATGCTCA-------AAA-A-TTTTTCGATAAGGG-AAATTTGGAAAAGGAA--AA-TTT-CACT-------TC---G-GG--TAAA---AAGGTACC-TT-TTTCCA--A--T-TGGGAATGGGGCCTGTTCAA--a
gi|8 : TTTCGCTAAGGGTAGGGG------GGGGG--GA-ATC-CACTTT-CAAATT---GAAGAAAAAAGTTAAGGTTCC--T-TTTCCAATA--T-TTGGAACGGGGCC-ATTCAA--
gi|8 : aaa-GTA-AGT--T----------T-GTTT-T----AGATATC---CAA-A---AG---CTGT-CCCTAATG-TTCATTGAAA-GCTCTTGTT---A------TTTTCGATAAGGG-AAAGG------GGGTA--AA-TTC-CACTTT-TAAATT-----GGAGGAAA---AAGGTACC-TT-TTTCCA--ATTT-TGGGAATGGGTCA-ATTCAA--CGG-CCTCATTTAT-AGAGAAT----CGAGATCCCTGtagatttcaatattgtaagtttgttttagatatccaaaagctgtccctaatgttcattgaaagctcttgttattttcgataagggaaagggggtaaattccacttttaaattggaggaaaaaggtacctttttccaattttgggaatgggtcaattcaacggcctcatttatagagaatcgagatccctg
gi|9 : aaatttcgctaagggtaggggggggggaatccactttcaaattgaagaaaaaagttaaggttccttttccaatatttggaacggggccattcaatagatttcaatattTCTTACAC--CAC-TCTTTGG-AAT-G-GGGCC----AGGGCCA-TTCA-AAT--AGGG-AAACTGTAATACTGGT-TAAT-T-TTGGGG-GA-AA-----------------------A--C-AAC--A-TTC--ACAAAAAA-CTC-ATCAAAT-TCTGCTTTTCTGTTGTTTT-GTTTTCA----A-T------T----GGTTT----TGGA------TCCAT--A---
gi|9 : tctaT-CCATAATG-TTCAT-GAAATGCTCT-------AAG-ATTTTTTTGAT-AGGG-ATATT------GGGAA--AA-TTC-CACT-------------------------------CC-TT-TTTGCA--A--A-TGGAAATGGGACC-ATTAAACGCGG-CCCCATTTCT-AGAGAAT----CACGAGCCCTGatgttcatgaaatgctctaagatttttttgatagggatattgggaaaattccactcctttttgcaaatggaaatgggaccattaaacgcggccccatttctagagaatcacgagccctga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAATATTGGGAATTTAGCAGCTTATTTTTGGGGAAATTATTTGATCAATCCAACATTTTAAAAAAATGAAAAAATTTGTTAATCAATTGGTTTTGGGTTTGTCAGATACAGCATAATAAGCGATTAACGTACGGTTCGTTTCTTGTTTTTGATTTTAAGTGTGTGTTTTGTTTTGTTTTTTTTTC
Unaligned ( gi|24 ): CTACAAAGCAGCTTATTAATATATTATTAAATTGAAAAATAAAAAGTATTCTACAAATAGAA