lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 6666666666 1111111111 11111 11111111 11 111 3333333333 22222222222222222222222222 11 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 4444444444444444 44444444444444444 1111 1111 555 33333333 1 22222222222 111 44444444 111111 111 1111 22222222222 1 1111 222 22222 1 1 1111 4 111 111 22 22222222
lowQualScore : 3 2 4444444444 1 77 0 1 666 5 0 0 6666666666 4 4 66 888 11111 5 777 4 777 66666666 0 5 8 00 5 777 555 5 6666666666 77 77 88888888888888888888888888 5 0 55 3 66 22 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 0 66 0 8888888 5555555555555555 1 44444444444444444 2222 5 2222 444 77 22222222 1 1 88888888888 888 99 99999999 1 3 666666 111 6 1 1 5 999999 0000 77777777777 4 66 1 1 0000 55 44 4 777 4 66 1 4 1 777 8 77777 9999 9999 2 2 9999 5 0000 7 5 7 0 6 111 9999 0 4 6 222 1 555 555 9 99 11111111 55
lowQualScore : . . .......... . .. . . ... . . . .......... . . .. ... ..... . ... . ... ........ . . . .. . ... ... . .......... .. .. .......................... . . .. . .. .. .......................................................................................... . . .. . ....... ................ . ................. .... . .... ... .. ........ . . ........... ... .. ........ . . ...... ... . . . . ...... .... ........... . .. . . .... .. .. . ... . .. . . . ... . ..... .... .... . . .... . .... . . . . . ... .... . . . ... . ... ... . .. ........ ..
lowQualScore : 3 2 3333333333 0 99 7 7 444 7 1 1 3333333333 4 4 33 111 33333 3 888 4 888 11111111 9 0 9 66 0 666 666 0 0000000000 99 99 22222222222222222222222222 1 2 11 2 99 66 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 99 7 6666666 5555555555555555 4 33333333333333333 1111 7 1111 222 77 88888888 0 0 88888888888 333 22 77777777 0 7 444444 777 7 0 7 7 222222 7777 11111111111 0 99 9 2 6666 11 66 4 888 2 11 0 4 5 111 9 11111 4444 4444 8 8 4444 0 6666 9 7 7 0 7 777 4444 7 0 7 555 7 888 888 3 66 55555555 55
consensus : AGCTGCAACGATTCA-CAAACTTTTCGATTCG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-T--TCGAT-T-ATTTGAA-TAGG-AACTT--TATT-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--GGG---------CA-------T-AA-CT-AAATTTCAGT-AAAC--AAA-CATTA--A--------A--AGA--A--------------C--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACTCA----GACTT-G----AGAAACTTCTAGAAA-T-AGATTTA-GATACCAGAGACTC----AGTAGATT-AA----ATACAAA---TCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTT---CA--TGTTAACCAC---ACTTGGTGACACTTA------TTACA---AG-ATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCC--CTCTCTTCGTATTTAATTGGCTTTGGGAGGATC-TTTGA-GCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGACGTGAATAGATAACTTGTACACA-TTA---TATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAG-TTG-TGAATCGAGAAT--CGATTTGGCTGACA---G---AATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
Reference ( gi|1 ) : AGCTGCAACGATTCA-CAAATTTTCC--TTCG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCAA-T--TCGAT-T-ATTTGAA-TAGG-AACTT--TATC-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAGT-AAAC--AAA-CATTA--A--------A--AGA--A--------------C--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACTC-----GACTCCG----AGAAACTTCTAGAAA-T-AGATTTAGAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-C-TT-TATCATGTT---CA--TGTTAACTACAGTACTTAGTGGCACTTA------TTACA---AA-ATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCC--CTTTCTTCGTATTTGATTGACTTTAAGAGGATC-TT-GA-CTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAAGGAAGTGAATAGATAACTT-TACACA-TTA---TATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAG-TTG-TGAATCGAAAAC--CGATTTGGCTGACA---G---AATCGCGGTTTTCGATGC-CCGCGG--------T--GAATCGTTGCACCTCT
gi|12 : AGCTGCAACGATTCAGCTAACTTT-----------TCGAT--TTCGATTTTTACCCA-TTCGATCCGG--ATTTTTAC-TAAACG---T-ATTTGTA-CA------TT--TAACTAGCTTAAAC---ATTTTA---TTTTCAGT--------AACAATT-ATGCAC--TGACACCACATAACAT-T--A----G-----ATC--ATTTAAA-C--GGA---------CAGCGTCTTT-AA-TC-AAATTTT-------C--AAT-CATTA--A----------------------------------A-----TATA----------C--CAA----------------TC---------T-TTGA----AT--CATT-------A--TT-----GACT-------AGAAACT
gi|15 : agCTGCAACGATTCA-CAAATTT--------------GAT--T--GAA----G-CCA-TTGGATTCCGTT---TACAAGC--TCACTAC-ATTTGAA-TAGT-AACTT--AGTT-A--TTTAAC---A-TTTA---TTTTCAAT--------CACATTC-ACACATA-T-AATTTA---AAGGA-CACATTTTA-----ATG--AAATG--TT--GAA---------CA-------T-----T----CTTCACT-AAAT--AAA--ATT-----------------------------------C--A-----TATA----------T-----AAT-------------TC---------T-TTAACT--
gi|2 : -CAAACTTTTTGATTCG-ACTCGAT--TTCGATTTTTA-ACA-TTCGATTCGGTTATTTTCGA-T--TTGAT-T-ATTTGAAGTAGG-AACTT--TATT-A--CTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACT-CA---AACAC-TACA----GTACAGATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTTAG--AGAC--AAAACATTA--ATTTGAAACA--AGA--ATACATTCTAAACAAC--A-----TTGA----------C--TGGATTAAATCATCACGTTTT---------TGTTAACC--ATCACATT-------AACTCA----GACTTAG----AGAAACTTCTAGAAA-TTAGATTTA---T----GAGACCC----AGTAGATT-AA----ATACAAA---TCTTGAAAGA------------TGTGATATTTCAGTGATTATGTC---------TGT-------------GTTA--CA--TGTTAACCAC-----TTGGTGACATTTA------TTACA---AG-ATTTCAGCAAATC-------CAACGAATAATCAAATCAAA--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCC--CTCTCTTCATATTTAATTGGCTTT-AGAGGATC-TT-TAGGTACTGGATTGTCATCATGCT----CCTATGACCATCTTGTTTG-TTTTAGGGCCTAAA-TAAA----GTGTCGATCAGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTTAAGGACGTGAATAGATAACTCGTACACA-TTA---TATTATTTTATATTGAACCGAA----CCGAATTTCCTCAG-TTG-TGAATCGAAAAT--CGATTTGGCTGACA---G---AATCGCGGTTTTCGATGCACTGCGG--------T--GAATCGTTGCACCTCT
gi|19 : AACTTTTCGATTCG-ACTCGAT--TTCGATTTTAG-ACA-ATCGATTCGGTTATTTTCGA-T--TCAAT-T-ATTTTAA-TTGA-AACTT--TATT-A--TTCAAC---A-CTTA---CTTTCAGT--------
gi|7 : TCGCACTCGATATTTCGATATTTA-ACAGTTCGATTCG-TTATTTTCGA----TCGATATAATTTGAA-TTGGAAACTTTATATA-A--TCTAACACTA-TTTAAACTTTTCAGTAACAGCTACA-AATCAAT-CATAAT-ACCTTATT-AACACATACACCG-A-----ATAAGATATGAATTTAGGA---------CA-------TAAA-CC-ACA--TAAGT-AATC--AAA--ATTATCA--------G--CGA--A--------------C--A-----
gi|20 : aaactttcggaatta-ATTTGAT--TT-GATTTTGA-ACA-TTCGATTTGGCTGTTTTCAA-C--TTGAT-T-ATTTGAA-TACT-AAC-----ATG-G--TT-------A-TCTA---CTTTCAGT--------CATAAAC-AT-CAT--aaacatacaaaataaaaaaagaaataaattcacaataacactgacttggattagattatcatgaattgttattaatattatcacattaactcatagacctatcaagttaggaagaaaatatctacggaaaatttga
gi|11 : --TTCGATTTTTG-ACA-TTCGATTCGATTATTTTCGT-T--GAAAT-T-ATTTGAA-AAGG-AAATT----------TTGAA-----------------------------CATAATC-AT-CAT--T-A-TTCA---AAACC-TACA----G-----ATA--ATATGAATT--AGGCCTTAATGCCA-------T-TA-TTAAAATTTAAGT-GACCAAAAA-AAATA--AC-------A--AGAATA--------------C--A-----TT------------C--T-AATCA------------TC---------C-TTAACTGGATTAAATTATCATAAAATTCCTCCAGACT-TA----AAAAATTTATAGAAA-T-acacaaac
gi|5 : ga-ATTTGAA-TAGG-AACTT--TATC-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTGCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAGT-AAAC--AAA-CATTA--A--------A--AGA--A--------------C--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACTC-----GACTCCG----AGAAACTTCTAGAAA-T-AGATTTAGAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-CTTT-TATCATGTT---CA--TGTTAACTACAGTACTTAGTGGCACTTA------TTACA---AA-ATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCC--CTTTCTTCGTATTTGATTGACTTT-AGAGGATCTTT-GA-CTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTG-TTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAA
gi|23 : -ATTTGAA-TAGA-AACTT--TATT-A--TTCAAC---A-TTTA---CTTTCAGT--------CATTATC-AC-CAT--C-AC-TAA---AACAT-TAC
gi|3 : -CAT--T-ACTT-A---AACAC-TACA----G-----ATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTCAGT-AACA--AAA-TATTA--A--------ACAAGA--A--------------C--ACATTCTTTAACAACATGGAC--TGGATTAAATTA-------TCATAATTTGTT-TTAATT--ATCACATT-------AACTC------------------AGACTTCAAG----------TT-----------GACTC----AATAGATA-AA----ATACAAA---TCTTGAAAGATTAACTTAGAGATGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-CTCTATTATGTC---CA--TGTTAACCAC-----TTGGTGACACTTACATGTATTGCC---GG-AGTTCAGTAAAACATTAGCCCAAGGAATAATCAGATCAAGTAACTGATTCAAGAGTTACATG--TTGTCTTATCTTTTAATACC----TA-CCT-AAAAC-CA---AAATACTCC--CTCTCTTCGTATTTAATTGGCTTTGA-AGGATC-TTTGA-GTACAGCATTGTCATCATGTT----CCT----CCACCTTGTTTGTTTT-AG----TGCC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAAATTGAAGGACGTGAATAGATAACTTATACACA-CTA---TTTTCTTTTATATTGAACCGAA----CCGAATTTGATCAG-TTG-TAAATCGAAAAT--CGATTCGGATGACA---G---AATCGCAGTTTTCGATGC-
gi|14 : A-CT-AAA---CAATTAAAC--AAA-CATTG--A--------G--TGG--A--------------TTAA-----ATTA----------TCATGGATT-------------TC---------T-CTAATT--ATCAAATT-------AACTCA----GACT--G----AG-------------------------ATACAAGAGACTC----AGTAGATT-AATTAAATACAAAT--TTTGAAA------GTTCTGAGGTGTGATATGTCAGTGATGATATTCCTATCAATTGTTCC-TT-TATTGTGTT---CA--TTTTAACac
gi|13 : ---------T-TTAACG--ATCAAATT-------AACTCA----GACTTAGTTAGAGAAACTTCTAGAAA-TTAGATCTATGATACCAGAGATTTCTATAGTAGATTTAA----ATACAAA---TCTTGAAAGATTGACTTAGAGGTGTGATATTTCAGTGATTATATTCCAACCAATTGTT-C-C-------TGTTAACCAGCTGTTGAC-----CACTTAGTGACACTTA------Tc
gi|9 : -----GACTTAC----AAAAACTTCTAAAAATT-AAATACATGGTATTAGAGAATC----TGTAAATT-AA----
gi|6 : agttaCTC----AGTAGATT-AA----GTACAAA---TCTTGAAAGA-------------GTGATAATTCAGTGATGATATTCCAATCAATTGTT-CCTT-TATTACGTC---CA--TGTTAACCAC-----TTGGTGACACTTA------CTACA---AG-ATTTCAGCATATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATGGTTTTTCTTATCTTTTATTACC----T--TCT-AAAAC-CA---AAATACTCC--CTCTCTTCATATTTAATTGGCTTT-GGAGGAcagcatgtatataataatgtaagattgacattaaacacttgttaacactctttatatgtaatattgcaacaaatcattgggtgtaatcaaaataaaacttgtatatttcctaattttttactatataatctcaagaccaaaagactaccatttgttggattcaagttacttgggagggtctttgagcactggattgacatcatgcccctctatcttgtttgttttagtgc
gi|9 : ACTTGTTAACACTCT------TTATATGTAATATTGCAACAAATCATTGG------GTGTAATCAAAATAAA--ACTTG-----------TATA--TTTCCTAATTTTTTACTATA----TAATCTCAAGAC-CA---AAAGACTAC--CATTTGTTGGATTCAAGTTACTT-GGGAGGGTC-TTTGA-GCACTGGATTGACATCATGCC----CCT----CTATCTTGTTTG-TTTTAG----TGaaattcaaaatactccctcagttggctttggaggatctttgagtaccggattgtcatcatgcttctccatcttgtttgttatagtgcctaaagtgttgattgaacgttttgtaaccaatcatgatcgccgttaaaatgttgttgatgtgaatagataacttgtacacgttatattcttttatattgaaccgaaccgaatttgctcagttgt
gi|4 : agttagacttacaaaaacttctaaaaattaaatacatggtattagagaatctgtaaattaacagcatgtatataataatgtaagattgacattaaacTGACATTTA------CTACA---AA-AGTGAAG-AAATCGTT-GTT-----AATATTCAATACAAA--ACTCG-----------CATG--TTTTGTAACTTTTTAATACC----TA-TC-----AC-CATTAAAATACTCGGGCTTTTT--GGGTTCAAGTGA-TTTGGGAAGATT-TTTGA-GCGCTGGATTTTCATCGTGCT----CCT----CGGCC--ATTT-TCTTTAG----TTACCTACATTATGTGTTGATTGGAAGTTTTCTAGCTAATCAGAAGCGCCGTTCAAAAG-GTCAAGGAAATGAATAAATGACGTATACACATTTAATTTATTCTTTTACATTA------------CGATTTTGTTCAG-TTG-TGAATCTAGAAT--TGATTTGGCTGACA---G---AATCGCAGTTTTCGATGCATCGCGG--------T--GAATTCTTGCACCTc
gi|8 : ataatagaatggccatatattcttcaaatgccagtcattaagaattaaagaaaaagaacaaatcttaaatatcctagatcagattgaatttgaacataagcttctgtaaatattttataaagaaagtatacgatgtcagaaaatcagtaaattaaatacaaacaattctagtttgattgaagcagttgttcaacaaattgtATCAAATCAAA--ACTGA-----------CATG--ATTTCTCATATTTTACTA----------------GC-CA---AAATAATCC--CTCTCTTTGTATTTAATTGGCTTCG-GAGGAAC-TTTGA-GCACTGGATTGTCATCATGCT----CCT----TCATCTTGTCCGTTTT-AG----TGAC-TAAA----GTGTTTATTGGACGTTTTGTATCCAATCAAAACCGCCGTTAAAAAG-TTGAAGGAAGTGAATAGATAATTTGTACACA-TTA---TATTC-TTTATATTGAACCGAA----CCGAATTTGCTCCG-TTG-TGAATCGAGGTT--CGATTTGGCTGTCA---G---AATCGCGGTTTTCG-TGCACCGCGA--------T--GAATCGTTGCACCTCT
gi|16 : ATG--TTTTCTTATCTTTTAT-ACCGAGCTA-TCT-TAAAC-CA---AAATACTCC--CTCTCTTCGTATTCAATTGGCTT--GGAGGATCGTT-GA-GCACTGAATTGTCATCATGCTTCGATCT----CCATCTTGTTTG-TTTTAG----TGCC-TAAC----ATGTTGATTGGACA-TTTGTAACCAATCAGAAGCGTCGT
gi|6 : aa-AAAATTCA---AAATACTCC--CTC-----------AGTTGGCTTTG-GAGGATC-TTTGA-GTACCGGATTGTCATCATGCT----TCT----CCATCTTGTTTGTTAT-AG----TGCC-TAAA----GTGTTGATTGAACGTTTTGTAACCAATCATGATCGCCGTTAAAATG-TTG-TTGATGTGAATAGATAACTTGTACACG-TTA---TATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAG-TTG-T
gi|10 : ctcagtagattaagtacaaatcttgaaagagtgataattcagtgatgatattccaatcaattgttcctttattacgtccatgttaaccacttggtgacacttactacaagatttcagcatatcattagcccaaggaataatcaaatcaagactgacatggtttttcttatcttttattaccttctaaaaccaaaatactccctctcttcatatttaattggctttggaggATTTAATTGGCTTGAAG--GATC-TTTGA-GCACTGGATTGTCATCACGCT----CCT----CCATCTTGTTTGTTTT-AT----TGAC-TAAA----GTGTTGAATAGACGTTTTTTAGCCAACCAGAAGCGATTTTAAAAAG-TTGAAGGATGTGAATAGATAACTTGTACACA-TTA---TATTCTTTTGTATTGAACCGAA----TCGGATTTG--CAG-TTGTTAAAACGAGAAT--CGGTCTGGCCGACA---G---AATTGCGGTTTACGATG
gi|18 : TATATTGCACCTAATTAACTGAATTTGTTCAG-TTG-TGAGTAGAAAAT--CAATTTAGTTGAAA---G---AATCATGGTTTTTGATGTGTTACAG--------T--GAATCATTGCACCTCTaag
gi|17 : ATTGAATAGAT----CCAAATTTTCTCAG-TTG-TTAATTGAGAAT--CGGTCTTGCTGACT---G---AATAGCAGTTTGCGATACACCACGGAGAAAAACTCAGAATCGTTACACTTTTa
gi|21 : AACTGAA----TCGAATTTCCTCCG-TTA-TGAAGCAAGATT--CGATTTGGCTGATA---G---AATTGTACTTTTTGATG---CATTG--------T--GAATCGTTGCATATCT
gi|22 : TTCACTCAGAGTGCTGAGT---AAAT--CGATTTGGCCAACA---A---------GATTTTTGATGCATTGCAG--------T--GAATCGCT
gi|2 : G-TGCATCGAAAACCGCGATT---CTGTCA---GCCAAAT--CGATTTTCGAT
gi|3 : caaactttttgattcgactcgatttcgatttttaacattcgattcggttattttcgatttgattatttgaagtaggaactttattacttaacatttactttcagtcataatcatcattactcaaacactacagtacagataatatgaattaggcataatcaaaattttagagacaaaacattaatttgaaacaagaatacattctaaacaacattgactggattaaatcatcacgtttttgttaaccatcacattaactcagacttagagaaacttctagaaattagatttatgagacccagtagattaaatacaaatcttgaaagatgtgatatttcagtgattatgtctgtgttacatgttaaccacttggtgacatttattacaagatttcagcaaatccaacgaataatcaaatcaaaactgacatgttttcttatcttttattacctatctaaaaccaaaatactccctctcttcatatttaattggctttagaggatctttaggtactggattgtcatcatgctcctatgaccatcttgtttgttttagggcctaaataaagtgtcgatcagacgttttgtaaccaatcagaagcgccgttaaaaagtttaaggacgtgaatagataactcgtacacattatattattttatattgaaccgaaccgaatttcctcagttgtgaG-TGCATCGAAAACTGCGATT---CTGTCATCCG---AAT--CGATTTTCGATtgcggtgaatcgttgcacctct
gi|24 : cattacttaaacactacagataatatgaattaggcataatcaaaatttcagtaacaaaatattaaacaagaacacattctttaacaacatggactggattaaattatcataatttgttttaattatcacattaactcagacttcaagttgactcaatagataaaatacaaatcttgaaagattaacttagagatgtgatatttcagtgatgatattccaatcaattgttcctctattatgtccatgttaaccacttggtgacacttacatgtattgccggagttcagtaaaacattagcccaaggaataatcagatcaagtaactgattcaagagttacatgttgtcttatcttttaatacctacctaaaaccaaaatactccctctcttcgtatttaattggctttgaaggatctttgagtacagcattgtcatcatgttcctccaccttgtttgttttagtgcctaaagtgttgattggacgttttgtaaccaatcagaagcgccgttaaaaaaattgaaggacgtgaatagataacttatacacactattttcttttatattgaaccgaaccgaatttgatcagttgtaaTCAAGAAT--CAATTCAGCTGACA---G---AAT--CAGTTTTAGATG---CATGGTAT-----T--GAATTGTTTCACCT
gi|26 : TGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|25 : TGCACCGCGG--------T--GAATCGTTGCACCTCTa
Alignments
lowQualScore : 1 22222 11111 1 11111111 111 2222222222 222222222 1111111 333333333333333333 5555555555555555555555555555555555555555555555555555555555555555555555 1111111 1111 3333333 1 2222 1111 1111 222 11111111 1111 33333 111111 22222222222 1111 1 11111111
lowQualScore : 0 66666 00000 3 66 0 5 5 2 77 0 5 4 4 44 4 777777 3 777 4 777 44444444 4 8 99 4 333 333 4 9999999999 66 66 000000000 6666666 55 9999 3 222222222222222222 1 66 9999 5 6666666666666666666666666666666666666666666666666666666666666666666666 4 66 0 8888888 2222 5 7777777 1 1 3 5555 444 2222 5 2222 000 66666666 0 5 3333 7 0 66 1 22222 888 444444 5 0 0 3 333 0 66 33333333333 66 0 9999 4 4 4 777 6666 8888 8888 5 5 8888 4 9999 5 5 1 77 77 8888 0 4 2 33333333 55
lowQualScore : . ..... ..... . .. . . . . .. . . . . .. . ...... . ... . ... ........ . . .. . ... ... . .......... .. .. ......... ....... .. .... . .................. . .. .... . ...................................................................... . .. . ....... .... . ....... . . . .... ... .... . .... ... ........ . . .... . . .. . ..... ... ...... . . . . ... . .. ........... .. . .... . . . ... .... .... .... . . .... . .... . . . .. .. .... . . . ........ ..
lowQualScore : 0 55555 00000 0 99 2 0 0 2 88 2 0 0 0 77 0 333333 9 000 0 000 55555555 4 0 55 4 777 999 4 9999999999 99 99 000000000 2222222 44 8888 6 000000000000000000 9 11 4444 7 7777777777777777777777777777777777777777777777777777777777777777777777 4 11 7 6666666 1111 0 1111111 4 4 2 7777 000 1111 7 1111 000 77777777 7 7 9999 1 9 99 9 55555 888 444444 0 4 1 6 111 7 99 88888888888 11 1 4444 4 0 0 000 3333 5555 5555 7 5 5555 4 4444 0 3 7 99 99 5555 7 0 0 22222222 00
consensus : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCGAT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-C-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTCCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
Reference ( family-679 ) : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-TTCGAT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--GGG---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-T-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTTCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGACGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|1 : AGCTGCAACGATTCA-CAAATTTTCC----TT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCAA-TTCGAT-T-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC-----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-C-TT-TATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTTAAGAGGATC-TTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAAGGAAGTGAATAGATAACTT-TACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAAAACCGATTTGGCTGACAGAATCGCGGTTTTCGATGC-CCGCGG--------T--GAATCGTTGCACCTCT
gi|10 : ATTTAATTGGCTT--GAAGGATCTTTGAGCACTGGATTGTCATCACGCT----CCT----CCATCTTGTTTGTTTT-AT----TGAC-TAAA----GTGTTGAATAGACGTTTTTTAGCCAACCAGAAGCGATTTTAAAAAG-TTGAAGGATGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTGTATTGAACCGAA----TCGGATTTG--CAGTTGTTAAAACGAGAATCGGTCTGGCCGACAGAATTGCGGTTTACGATG
gi|11 : --TTCGATTTTTG-ACA-TTCGATTCGATTATTTTCGT-TGAAAT-T-ATTTGAA-AAGG-AA-----AT-T----TTGAA-----------------------------CATAATC-AT-CAT--T-A-TTCA---AAACC-TACA----G-----ATA--ATATGAATT--AGGCCTTAATGCCA-------T-TA-TTAAAATTTAAG----------------T-GACCAAAA----AAAATA--ACA--AGAATAC--A-----TT------------C--T-AATCA------------TC---------C-TTAACTGGATTAAATTATCATAAAATTCCTCCAGACT-T-----AAAAAATTTATAGAAAT-aag
gi|12 : gaAGCTGCAACGATTCAGCTAACTTT---------------TCGAT--TTCGATTTTTACCCA-TTCGATCCGG--ATTTTT-A-CTAAACGT-ATTTGTA-CA------TTTAAC-T-AGCTTAAAC---ATTTTA---TTTTCAGT--------AACAATT-ATGCAC--TGACACCACATAACAT-T--A----G-----ATC--ATTTAAA-C--GGA---------CAGCGTCTTT-AA-TC-AAATTTT-----------------------C--AA----TCATTA--A-AT-ATA--CC--A-----ATCT----------T--TGAATCA------------TT---------A-TTGACT--A
gi|13 : ag---------T-TTAACG--ATCAAATT-------AACT----CAGACT-TAGTTAGAGAAACTTCTAGAAATTAGATCTATG-ATACCAGAGATTTCTATAGTAGATTTAA----ATAC---AAATCTTGAAAGATTGACTTAGAGGTGTGATATTTCAGTGATTATATTCCAACCAATTGTT-C--C-TGTTA--ACCAGCTGTTGAC--C---ACTTAGTGACACT---TA------T-gaaact
gi|14 : A-CT-AAA---CAA----------------TTAAAC--AA----ACATTG--A-G--TGG--ATTAA-----ATTA----------TCATGGATT-------------TC---------T-CTAATT--ATCAAATT-------AACT----CAGACT--------------------------GA-----G-ATACAAGAGACTC----AGTAGATT-AATTAAATAC---AAATTTTGAAAG-TT--CT--GAGGTGTGATATGTCAGTGATGATATTCCTATCAATTGTTCC-TT-TATTGTGTTCA--TTTTAACC
gi|15 : CTGCAACGATTCA-CAAATTT---G--ATT--GA-A------------------G-CCA-TTGGATTCCGTT---TACAAGCTCACTAC-ATTTGAA-TAGT-AACTTA-GT-T-A--TTTAAC---A-TTTA---TTTTCAAT--------CACATTC-ACACATA-T-AATTTA---AAGGA-CACATTTTA-----ATG--AAATG--TT--GAA---------CA-------T-----T----CTTCAC----------------T-AAAT--AA----A-ATT--------------C--A-----TATA----------T----AAT--------------TC---------T-TTAACT--
gi|16 : ATG--TTTTCTTATCTTTTAT-ACCGAGCTA-TCT-TAAAC-CA---AAATACTCCCTCTCTTCGTATTCAATTGGCTT--GGAGGATCGTTGAGCACTGAATTGTCATCATGCTTCGATCT----CCATCTTGTTTG-TTTTAG----TGCC-TAAC----ATGTTGATTGGACA-TTTGTAACCAATCAGAAGCGTCGT
gi|17 : aaATTGAATAGAT----CCAAATTTTCTCAGTTG-TTAATTGAGAATCGGTCTTGCTGACTGAATAGCAGTTTGCGATACACCACGGAGAAAAACTCAGAATCGTTACACTTTT
gi|18 : TATATTGCACCTAATTAACTGAATTTGTTCAGTTG-TGAGTAGAAAATCAATTTAGTTGAAAGAATCATGGTTTTTGATGTGTTACAG--------T--GAATCATTGCACCTCT
gi|19 : AACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTAG-ACA-ATCGATTCGGTTATTTTCGA-TTCAAT-T-ATTTTAA-TTGA-AACTTT-AT-T-A--TTCAAC---A-CTTA---CTTTCAGT--------a
gi|2 : -CAAACTTTTTG--ATT--CG-ACTCGAT--TTCGATTTTTA-ACA-TTCGATTCGGTTATTTTCGA-TTTGAT-T-ATTTGAAGTAGG-AACTTT-AT-T-A--CTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACT-CA---AACAC-TACA----GTACAGATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTTAGAGACAAAACATTAATTTGAAAC--AAGAATACATTCT-A-A--ACA--AC--A-----TTGA----------C--TGGATTAAATCATCACGTTTT---------TGTTAACC--ATCACATT-------AACT----CAGACT-TA----GAGAAACTTCTAGAAATTAGATTTA----T----GAGACCC----AGTAGATT-AA----ATAC---AAATCTTGAAAGAT------------GTGATATTTCAGTGATTATGT---------------C-TG-TGTTA----CA--TGTTAACCAC-----TTGGTGACATT---TA------T-TACAAGATTTCAGCAAATC-------CAACGAATAATCAAATCAAA--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAG-AGGATCTTTAGGTACTGGATTGTCATCATGCT----CCTATGACCATCTTGTTTGTTTT-AGGGCCTAAA-TAAA----GTGTCGATCAGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTTAAGGACGTGAATAGATAACTCGTACACATT--AT--ATTATTTTATATTGAACCGAA----CCGAATTTCCTCAGTTG-TGAATCGAAAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACTGCGG--------T--GAATCGTTGCACCTCT
gi|20 : -ATTTGAT--TT-GATTTTGA-ACA-TTCGATTTGGCTGTTTTCAA-CTTGAT-T-ATTTGAA-TACT-AAC----AT-G-G--TT-------A-TCTA---CTTTCAGT--------CATAAAC-AT-CAT--
gi|21 : AACTGAA----TCGAATTTCCTCCGTTA-TGAAGCAAGATTCGATTTGGCTGATAGAATTGTACTTTTTGATGCATT---G--------T--GAATCGTTGCATATCTacacaaac
gi|22 : AATCGATTTGGCCAACAA------GATTTTTGATGCATTGCAG--------T--GAATCGCT
gi|23 : ttcactcagagtgctgagta-ATTTGAA-TAGA-AACTTT-AT-T-A--TTCAAC---A-TTTA---CTTTCAGT--------CATTATC-AC-CAT--C-AC-TAA---AACAT-TAC
gi|24 : TCAAGAATCAATTCAGCTGACAGAAT--CAGTTTTAGATGCATGGTAT--------T--GAATTGTTTCACCT
gi|25 : TGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|26 : TGCACCGCGG--------T--GAATCGTTGCACCTCTa
gi|3 : -CAT--T-ACTT-A---AACAC-TACA----G-----ATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTCAG----------------T-AACA--AA----ATATTA--A-ACAAGA--AC--ACATTCTTTAACAACATGGAC--TGGATTAAATTA-------TCATAATTTGTT-TTAATT--ATCACATT-------AACT----CAGAC---------------TTCAAG---------TT------------GACTC----AATAGATA-AA----ATAC---AAATCTTGAAAGATTAACTTAGAGATGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-CTCTATTATGTCCA--TGTTAACCAC-----TTGGTGACACT---TACATGTAT-TGCCGGAGTTCAGTAAAACATTAGCCCAAGGAATAATCAGATCAAGTAACTGATTCAAGAGTTACATG--TTGTCTTATCTTTTAATACC----TA-CCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGA-AGGATCTTTGAGTACAGCATTGTCATCATGTT----CCT----CCACCTTGTTTGTTTT-AG----TGCC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAAATTGAAGGACGTGAATAGATAACTTATACACACT--AT--TTTCTTTTATATTGAACCGAA----CCGAATTTGATCAGTTG-TAAATCGAAAATCGATTCGGATGACAGAATCGCAGTTTTCGATGCACa
gi|4 : --TGTTCAACAA---A-TTGTTGACATT---TA------C-TACAAAAGTGAAG-AAATCGTT-GTT-----AATATTCAATACAAA--ACTCG-----------CATG--TTTTGTAACTTTTTAATACC----TA-TC-----AC-CATTAAAATACTCGGGCTTTTTGGGTTCAAGTGA-TTTGGGAAGATTTTTGAGCGCTGGATTTTCATCGTGCT----CCT----CGGCC--ATTT-TCTTTAG----TTACCTACATTATGTGTTGATTGGAAGTTTTCTAGCTAATCAGAAGCGCCGTTCAAAAG-GTCAAGGAAATGAATAAATGACGTATACACATTTAATTTATTCTTTTACATTA------------CGATTTTGTTCAGTTG-TGAATCTAGAATTGATTTGGCTGACAGAATCGCAGTTTTCGATGCATCGCGG--------T--GAATTCTTGCACCT
gi|5 : ataatagaatggccatatattcttcaaatgccagtcattaagaattaaagaaaaagaacaaatcttaaatatcctagatcagattgaatttgaacataagcttctgtaaatattttataaagaaagtatacgatgtcagaaaatcagtaaattaaatacaaacaattctagtttgattgaagcagt-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTGCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC-----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-CTTT-TATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTT-AGAGGATCTTTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTG-TTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAA
gi|6 : CTC----AGTAGATT-AA----GTAC---AAATCTTGAAAGA-------------GTGATAATTCAGTGATGATATTCCAATCAATTGTT-CCTT-TATTACGTCCA--TGTTAACCAC-----TTGGTGACACT---TA------C-TACAAGATTTCAGCATATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATGGTTTTTCTTATCTTTTATTACC----T--TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTT-GGAGGA
gi|6 : -AAAATTCA---AAATACTCCCTC-----------AGTTGGCTTTGG-AGGATCTTTGAGTACCGGATTGTCATCATGCT----TCT----CCATCTTGTTTGTTAT-AG----TGCC-TAAA----GTGTTGATTGAACGTTTTGTAACCAATCATGATCGCCGTTAAAATG-TTGT-TGATGTGAATAGATAACTTGTACACGTT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-Taaattcaaaatactccctcagttggctttggaggatctttgagtaccggattgtcatcatgcttctccatcttgtttgttatagtgcctaaagtgttgattgaacgttttgtaaccaatcatgatcgccgttaaaatgttgttgatgtgaatagataacttgtacacgttatattcttttatattgaaccgaaccgaatttgctcagttgt
gi|7 : ctcagtagattaagtacaaatcttgaaagagtgataattcagtgatgatattccaatcaattgttcctttattacgtccatgttaaccacttggtgacacttactacaagatttcagcatatcattagcccaaggaataatcaaatcaagactgacatggtttttcttatcttttattaccttctaaaaccaaaatactccctctcttcatatttaattggctttggaggAAACTTT-CGGAATTATCGCACTCGATATTTCGATATTTA-ACAGTTCGATTCG-TTATTTTCGA--TCGATATAATTTGAA-TTGGAAACTTT-ATATAA--TCTAACACTA-TTTAAACTTTTCAGTAACAGCTACA-AATCAAT-CATAAT-ACCTTATT-AACACATACACCG-A-----ATAAGATATGAATTTAGGA---------CA-------TAAA-CC-ACA--TAAG----------------T-AATC--AA----A-ATTATCA-G--CGA--AC--A-----
gi|8 : ATCAAATCAAA--ACTGA-----------CATG--ATTTCTCATATTTTACTA----------------GC-CA---AAATAATCCCTCTCTTTGTATTTAATTGGCTTCGG-AGGAACTTTGAGCACTGGATTGTCATCATGCT----CCT----TCATCTTGTCCGTTTT-AG----TGAC-TAAA----GTGTTTATTGGACGTTTTGTATCCAATCAAAACCGCCGTTAAAAAG-TTGAAGGAAGTGAATAGATAATTTGTACACATT--AT--ATTC-TTTATATTGAACCGAA----CCGAATTTGCTCCGTTG-TGAATCGAGGTTCGATTTGGCTGTCAGAATCGCGGTTTTCG-TGCACCGCGA--------T--GAATCGTTGCACCTCTaaacatacaaaataaaaaaagaaataaattcacaataacactgacttggattagattatcatgaattgttattaatattatcacattaactcatagacctatcaagttaggaagaaaatatctacggaaaatttga
gi|9 : TTAA--AC---ACTTGTTAACACTCTTTA------TATGTAATATTGCAACAAATCATTGG------GTGTAATCAAAATAAA--ACTTG-----------TATA--TTTCCTAATTTTTTACTATA----TAATCTCAAGAC-CA---AAAGACTACCATTTGTTGGATTCAAGTTACTT-GGGAGGGTCTTTGAGCACTGGATTGACATCATGCC----CCT----CTATCTTGTTTG-TTTTAG----TG
Alignments
lowQualScore : 1 22222 11111 11 1 11111111 111 2222222222 222222222 1111111 333333333333333333 5555555555555555555555555555555555555555555555555555555555555555555555 1111111 1111 3333333 1 2222 1111 1111 222 11111111 1111 33333 111111 22222222222 1111 1 11111111
lowQualScore : 0 66666 00000 3 66 0 5 5 2 00 66 5 4 4 44 4 777777 3 777 4 777 44444444 4 8 99 4 333 333 4 9999999999 66 66 000000000 6666666 55 9999 3 222222222222222222 1 66 9999 5 6666666666666666666666666666666666666666666666666666666666666666666666 4 66 0 8888888 2222 5 9999999 1 1 3 5555 444 2222 5 2222 000 66666666 0 5 3333 7 0 66 1 22222 888 444444 5 0 0 3 333 0 66 33333333333 66 0 9999 4 4 4 777 6666 8888 8888 5 5 8888 4 9999 5 1 1 77 77 8888 0 4 2 33333333 55
lowQualScore : . ..... ..... . .. . . . . .. .. . . . .. . ...... . ... . ... ........ . . .. . ... ... . .......... .. .. ......... ....... .. .... . .................. . .. .... . ...................................................................... . .. . ....... .... . ....... . . . .... ... .... . .... ... ........ . . .... . . .. . ..... ... ...... . . . . ... . .. ........... .. . .... . . . ... .... .... .... . . .... . .... . . . .. .. .... . . . ........ ..
lowQualScore : 0 55555 00000 0 99 2 0 0 2 44 99 0 0 0 77 0 333333 9 000 0 000 55555555 4 0 55 4 777 999 4 9999999999 99 99 000000000 2222222 44 8888 6 000000000000000000 9 11 4444 7 7777777777777777777777777777777777777777777777777777777777777777777777 4 11 7 6666666 1111 0 0000000 4 4 2 7777 000 1111 7 1111 000 77777777 7 7 9999 1 4 99 9 55555 888 444444 0 4 1 6 111 7 99 88888888888 11 1 4444 4 0 0 000 3333 5555 5555 7 5 5555 4 4444 0 0 7 99 99 5555 7 0 0 22222222 00
consensus : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-C-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTCCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
Reference ( family-679 ) : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-C-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTCCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|1 : AGCTGCAACGATTCA-CAAATTTTCC----TT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCAA-TTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC-----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-C-TT-TATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTTAAGAGGATC-TTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAAGGAAGTGAATAGATAACTT-TACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAAAACCGATTTGGCTGACAGAATCGCGGTTTTCGATGC-CCGCGG--------T--GAATCGTTGCACCTCT
gi|10 : ATTTAATTGGCTT--GAAGGATCTTTGAGCACTGGATTGTCATCACGCT----CCT----CCATCTTGTTTGTTTT-AT----TGAC-TAAA----GTGTTGAATAGACGTTTTTTAGCCAACCAGAAGCGATTTTAAAAAG-TTGAAGGATGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTGTATTGAACCGAA----TCGGATTTG--CAGTTGTTAAAACGAGAATCGGTCTGGCCGACAGAATTGCGGTTTACGATG
gi|11 : --TTCGATTTTTG-ACA-TTCGATTCGATTATTTTCG---TTGAAAT-T-ATTTGAA-AAGG-AA-----AT-T----TTGAA-----------------------------CATAATC-AT-CAT--T-A-TTCA---AAACC-TACA----G-----ATA--ATATGAATT--AGGCCTTAATGCCA-------T-TA-TTAAAATTTAAG----------------T-GACCAAAA----AAAATA--ACA--AGAATAC--A-----TT------------C--T-AATCA------------TC---------C-TTAACTGGATTAAATTATCATAAAATTCCTCCAGACT-T-----AAAAAATTTATAGAAAT-aag
gi|12 : gaAGCTGCAACGATTCAGCTAACTTT---------------TCGAT--TTCGATTTTTACCCA-TTCGATCCGG--ATTTTT-A-CTAA--ACGT-ATTTGTA-CA------TTTAAC-T-AGCTTAAAC---ATTTTA---TTTTCAGT--------AACAATT-ATGCAC--TGACACCACATAACAT-T--A----G-----ATC--ATTTAAA-C--GGA---------CAGCGTCTTT-AA-TC-AAATTTT-----------------------C--AA----TCATTA--A-AT-ATA--CC--A-----ATCT----------T--TGAATCA------------TT---------A-TTGACT--A
gi|13 : ag---------T-TTAACG--ATCAAATT-------AACT----CAGACT-TAGTTAGAGAAACTTCTAGAAATTAGATCTATG-ATACCAGAGATTTCTATAGTAGATTTAA----ATAC---AAATCTTGAAAGATTGACTTAGAGGTGTGATATTTCAGTGATTATATTCCAACCAATTGTT-C--C-TGTTA--ACCAGCTGTTGAC--C---ACTTAGTGACACT---TA------T-gaaact
gi|14 : A-CT-AAA---CAA----------------TTAAAC--AA----ACATTG--A-G--TGG--ATTAA-----ATTA----------TCATGGATT-------------TC---------T-CTAATT--ATCAAATT-------AACT----CAGACT--------------------------GA-----G-ATACAAGAGACTC----AGTAGATT-AATTAAATAC---AAATTTTGAAAG-TT--CT--GAGGTGTGATATGTCAGTGATGATATTCCTATCAATTGTTCC-TT-TATTGTGTTCA--TTTTAACC
gi|15 : CTGCAACGATTCA-CAAATTT---G--ATT--GA-A------------------G-CCA-TTGGATTCCGTT---TACAAGCTCA--CTAC-ATTTGAA-TAGT-AACTTA-GT-T-A--TTTAAC---A-TTTA---TTTTCAAT--------CACATTC-ACACATA-T-AATTTA---AAGGA-CACATTTTA-----ATG--AAATG--TT--GAA---------CA-------T-----T----CTTCAC----------------T-AAAT--AA----A-ATT--------------C--A-----TATA----------T----AAT--------------TC---------T-TTAACT--
gi|16 : ATG--TTTTCTTATCTTTTAT-ACCGAGCTA-TCT-TAAAC-CA---AAATACTCCCTCTCTTCGTATTCAATTGGCTT--GGAGGATCGTTGAGCACTGAATTGTCATCATGCTTCGATCT----CCATCTTGTTTG-TTTTAG----TGCC-TAAC----ATGTTGATTGGACA-TTTGTAACCAATCAGAAGCGTCGT
gi|17 : aaATTGAATAGAT----CCAAATTTTCTCAGTTG-TTAATTGAGAATCGGTCTTGCTGACTGAATAGCAGTTTGCGATACACCACGGAGAAAAACTCAGAATCGTTACACTTTT
gi|18 : TATATTGCACCTAATTAACTGAATTTGTTCAGTTG-TGAGTAGAAAATCAATTTAGTTGAAAGAATCATGGTTTTTGATGTGTTACAG--------T--GAATCATTGCACCTCT
gi|19 : AACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTAG-ACA-ATCGATTCGGTTATTTTCGA-TTCA--AT-T-ATTTTAA-TTGA-AACTTT-AT-T-A--TTCAAC---A-CTTA---CTTTCAGT--------a
gi|2 : -CAAACTTTTTG--ATT--CG-ACTCGAT--TTCGATTTTTA-ACA-TTCGATTCGGTTATTTTCGA-TTTG--AT-T-ATTTGAAGTAGG-AACTTT-AT-T-A--CTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACT-CA---AACAC-TACA----GTACAGATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTTAGAGACAAAACATTAATTTGAAAC--AAGAATACATTCT-A-A--ACA--AC--A-----TTGA----------C--TGGATTAAATCATCACGTTTT---------TGTTAACC--ATCACATT-------AACT----CAGACT-TA----GAGAAACTTCTAGAAATTAGATTTA----T----GAGACCC----AGTAGATT-AA----ATAC---AAATCTTGAAAGAT------------GTGATATTTCAGTGATTATGT---------------C-TG-TGTTA----CA--TGTTAACCAC-----TTGGTGACATT---TA------T-TACAAGATTTCAGCAAATC-------CAACGAATAATCAAATCAAA--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAG-AGGATCTTTAGGTACTGGATTGTCATCATGCT----CCTATGACCATCTTGTTTGTTTT-AGGGCCTAAA-TAAA----GTGTCGATCAGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTTAAGGACGTGAATAGATAACTCGTACACATT--AT--ATTATTTTATATTGAACCGAA----CCGAATTTCCTCAGTTG-TGAATCGAAAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACTGCGG--------T--GAATCGTTGCACCTCT
gi|20 : -ATTTGAT--TT-GATTTTGA-ACA-TTCGATTTGGCTGTTTTCAA-CTTG--AT-T-ATTTGAA-TACT-AAC----AT-G-G--TT-------A-TCTA---CTTTCAGT--------CATAAAC-AT-CAT--
gi|21 : AACTGAA----TCGAATTTCCTCCGTTA-TGAAGCAAGATTCGATTTGGCTGATAGAATTGTACTTTTTGATGCATT---G--------T--GAATCGTTGCATATCTacacaaac
gi|22 : AATCGATTTGGCCAACAA------GATTTTTGATGCATTGCAG--------T--GAATCGCT
gi|23 : ttcactcagagtgctgagta-ATTTGAA-TAGA-AACTTT-AT-T-A--TTCAAC---A-TTTA---CTTTCAGT--------CATTATC-AC-CAT--C-AC-TAA---AACAT-TAC
gi|24 : TCAAGAATCAATTCAGCTGACAGAAT--CAGTTTTAGATGCATGGTAT--------T--GAATTGTTTCACCT
gi|25 : TGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|26 : TGCACCGCGG--------T--GAATCGTTGCACCTCTa
gi|3 : -CAT--T-ACTT-A---AACAC-TACA----G-----ATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTCAG----------------T-AACA--AA----ATATTA--A-ACAAGA--AC--ACATTCTTTAACAACATGGAC--TGGATTAAATTA-------TCATAATTTGTT-TTAATT--ATCACATT-------AACT----CAGAC---------------TTCAAG---------TT------------GACTC----AATAGATA-AA----ATAC---AAATCTTGAAAGATTAACTTAGAGATGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-CTCTATTATGTCCA--TGTTAACCAC-----TTGGTGACACT---TACATGTAT-TGCCGGAGTTCAGTAAAACATTAGCCCAAGGAATAATCAGATCAAGTAACTGATTCAAGAGTTACATG--TTGTCTTATCTTTTAATACC----TA-CCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGA-AGGATCTTTGAGTACAGCATTGTCATCATGTT----CCT----CCACCTTGTTTGTTTT-AG----TGCC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAAATTGAAGGACGTGAATAGATAACTTATACACACT--AT--TTTCTTTTATATTGAACCGAA----CCGAATTTGATCAGTTG-TAAATCGAAAATCGATTCGGATGACAGAATCGCAGTTTTCGATGCACa
gi|4 : --TGTTCAACAA---A-TTGTTGACATT---TA------C-TACAAAAGTGAAG-AAATCGTT-GTT-----AATATTCAATACAAA--ACTCG-----------CATG--TTTTGTAACTTTTTAATACC----TA-TC-----AC-CATTAAAATACTCGGGCTTTTTGGGTTCAAGTGA-TTTGGGAAGATTTTTGAGCGCTGGATTTTCATCGTGCT----CCT----CGGCC--ATTT-TCTTTAG----TTACCTACATTATGTGTTGATTGGAAGTTTTCTAGCTAATCAGAAGCGCCGTTCAAAAG-GTCAAGGAAATGAATAAATGACGTATACACATTTAATTTATTCTTTTACATTA------------CGATTTTGTTCAGTTG-TGAATCTAGAATTGATTTGGCTGACAGAATCGCAGTTTTCGATGCATCGCGG--------T--GAATTCTTGCACCT
gi|5 : ataatagaatggccatatattcttcaaatgccagtcattaagaattaaagaaaaagaacaaatcttaaatatcctagatcagattgaatttgaacataagcttctgtaaatattttataaagaaagtatacgatgtcagaaaatcagtaaattaaatacaaacaattctagtttgattgaagcagt-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTGCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC-----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-CTTT-TATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTT-AGAGGATCTTTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTG-TTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAA
gi|6 : CTC----AGTAGATT-AA----GTAC---AAATCTTGAAAGA-------------GTGATAATTCAGTGATGATATTCCAATCAATTGTT-CCTT-TATTACGTCCA--TGTTAACCAC-----TTGGTGACACT---TA------C-TACAAGATTTCAGCATATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATGGTTTTTCTTATCTTTTATTACC----T--TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTT-GGAGGA
gi|6 : -AAAATTCA---AAATACTCCCTC-----------AGTTGGCTTTGG-AGGATCTTTGAGTACCGGATTGTCATCATGCT----TCT----CCATCTTGTTTGTTAT-AG----TGCC-TAAA----GTGTTGATTGAACGTTTTGTAACCAATCATGATCGCCGTTAAAATG-TTGT-TGATGTGAATAGATAACTTGTACACGTT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-Taaattcaaaatactccctcagttggctttggaggatctttgagtaccggattgtcatcatgcttctccatcttgtttgttatagtgcctaaagtgttgattgaacgttttgtaaccaatcatgatcgccgttaaaatgttgttgatgtgaatagataacttgtacacgttatattcttttatattgaaccgaaccgaatttgctcagttgt
gi|7 : ctcagtagattaagtacaaatcttgaaagagtgataattcagtgatgatattccaatcaattgttcctttattacgtccatgttaaccacttggtgacacttactacaagatttcagcatatcattagcccaaggaataatcaaatcaagactgacatggtttttcttatcttttattaccttctaaaaccaaaatactccctctcttcatatttaattggctttggaggAAACTTT-CGGAATTATCGCACTCGATATTTCGATATTTA-ACAGTTCGATTCG-TTATTTTCGA--TCG--ATATAATTTGAA-TTGGAAACTTT-ATATAA--TCTAACACTA-TTTAAACTTTTCAGTAACAGCTACA-AATCAAT-CATAAT-ACCTTATT-AACACATACACCG-A-----ATAAGATATGAATTTAGGA---------CA-------TAAA-CC-ACA--TAAG----------------T-AATC--AA----A-ATTATCA-G--CGA--AC--A-----
gi|8 : ATCAAATCAAA--ACTGA-----------CATG--ATTTCTCATATTTTACTA----------------GC-CA---AAATAATCCCTCTCTTTGTATTTAATTGGCTTCGG-AGGAACTTTGAGCACTGGATTGTCATCATGCT----CCT----TCATCTTGTCCGTTTT-AG----TGAC-TAAA----GTGTTTATTGGACGTTTTGTATCCAATCAAAACCGCCGTTAAAAAG-TTGAAGGAAGTGAATAGATAATTTGTACACATT--AT--ATTC-TTTATATTGAACCGAA----CCGAATTTGCTCCGTTG-TGAATCGAGGTTCGATTTGGCTGTCAGAATCGCGGTTTTCG-TGCACCGCGA--------T--GAATCGTTGCACCTCTaaacatacaaaataaaaaaagaaataaattcacaataacactgacttggattagattatcatgaattgttattaatattatcacattaactcatagacctatcaagttaggaagaaaatatctacggaaaatttga
gi|9 : TTAA--AC---ACTTGTTAACACTCTTTA------TATGTAATATTGCAACAAATCATTGG------GTGTAATCAAAATAAA--ACTTG-----------TATA--TTTCCTAATTTTTTACTATA----TAATCTCAAGAC-CA---AAAGACTACCATTTGTTGGATTCAAGTTACTT-GGGAGGGTCTTTGAGCACTGGATTGACATCATGCC----CCT----CTATCTTGTTTG-TTTTAG----TG
Alignments
lowQualScore : 1 22222 11111 11 1 11111111 111 2222222222 222222222 1111111 333333333333333333 5555555555555555555555555555555555555555555555555555555555555555555555 1111111 1111 3333333 1 2222 1111 1111 222 11111111 1111 33333 111111 22222222222 1111 1 11111111
lowQualScore : 0 66666 00000 3 66 0 5 5 2 00 66 5 4 4 44 4 777777 3 777 4 777 44444444 4 8 99 4 333 333 4 9999999999 66 66 000000000 6666666 55 9999 3 222222222222222222 1 66 9999 5 6666666666666666666666666666666666666666666666666666666666666666666666 4 66 0 8888888 2222 5 9999999 1 1 3 5555 444 2222 5 2222 000 66666666 0 5 3333 7 0 66 1 22222 888 444444 5 0 0 3 333 0 66 33333333333 66 0 9999 4 4 4 777 6666 8888 8888 5 5 8888 4 9999 5 1 1 77 77 8888 0 4 2 33333333 55
lowQualScore : . ..... ..... . .. . . . . .. .. . . . .. . ...... . ... . ... ........ . . .. . ... ... . .......... .. .. ......... ....... .. .... . .................. . .. .... . ...................................................................... . .. . ....... .... . ....... . . . .... ... .... . .... ... ........ . . .... . . .. . ..... ... ...... . . . . ... . .. ........... .. . .... . . . ... .... .... .... . . .... . .... . . . .. .. .... . . . ........ ..
lowQualScore : 0 55555 00000 0 99 2 0 0 2 44 99 0 0 0 77 0 333333 9 000 0 000 55555555 4 0 55 4 777 999 4 9999999999 99 99 000000000 2222222 44 8888 6 000000000000000000 9 11 4444 7 7777777777777777777777777777777777777777777777777777777777777777777777 4 11 7 6666666 1111 0 0000000 4 4 2 7777 000 1111 7 1111 000 77777777 7 7 9999 1 4 99 9 55555 888 444444 0 4 1 6 111 7 99 88888888888 11 1 4444 4 0 0 000 3333 5555 5555 7 5 5555 4 4444 0 0 7 99 99 5555 7 0 0 22222222 00
consensus : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-C-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTCCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
Reference ( family-679 ) : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-C-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTCCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|1 : AGCTGCAACGATTCA-CAAATTTTCC----TT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCAA-TTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC-----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-C-TT-TATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTTAAGAGGATC-TTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAAGGAAGTGAATAGATAACTT-TACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAAAACCGATTTGGCTGACAGAATCGCGGTTTTCGATGC-CCGCGG--------T--GAATCGTTGCACCTCT
gi|10 : ATTTAATTGGCTT--GAAGGATCTTTGAGCACTGGATTGTCATCACGCT----CCT----CCATCTTGTTTGTTTT-AT----TGAC-TAAA----GTGTTGAATAGACGTTTTTTAGCCAACCAGAAGCGATTTTAAAAAG-TTGAAGGATGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTGTATTGAACCGAA----TCGGATTTG--CAGTTGTTAAAACGAGAATCGGTCTGGCCGACAGAATTGCGGTTTACGATG
gi|11 : --TTCGATTTTTG-ACA-TTCGATTCGATTATTTTCG---TTGAAAT-T-ATTTGAA-AAGG-AA-----AT-T----TTGAA-----------------------------CATAATC-AT-CAT--T-A-TTCA---AAACC-TACA----G-----ATA--ATATGAATT--AGGCCTTAATGCCA-------T-TA-TTAAAATTTAAG----------------T-GACCAAAA----AAAATA--ACA--AGAATAC--A-----TT------------C--T-AATCA------------TC---------C-TTAACTGGATTAAATTATCATAAAATTCCTCCAGACT-T-----AAAAAATTTATAGAAAT-aag
gi|12 : gaAGCTGCAACGATTCAGCTAACTTT---------------TCGAT--TTCGATTTTTACCCA-TTCGATCCGG--ATTTTT-A-CTAA--ACGT-ATTTGTA-CA------TTTAAC-T-AGCTTAAAC---ATTTTA---TTTTCAGT--------AACAATT-ATGCAC--TGACACCACATAACAT-T--A----G-----ATC--ATTTAAA-C--GGA---------CAGCGTCTTT-AA-TC-AAATTTT-----------------------C--AA----TCATTA--A-AT-ATA--CC--A-----ATCT----------T--TGAATCA------------TT---------A-TTGACT--A
gi|13 : ag---------T-TTAACG--ATCAAATT-------AACT----CAGACT-TAGTTAGAGAAACTTCTAGAAATTAGATCTATG-ATACCAGAGATTTCTATAGTAGATTTAA----ATAC---AAATCTTGAAAGATTGACTTAGAGGTGTGATATTTCAGTGATTATATTCCAACCAATTGTT-C--C-TGTTA--ACCAGCTGTTGAC--C---ACTTAGTGACACT---TA------T-gaaact
gi|14 : A-CT-AAA---CAA----------------TTAAAC--AA----ACATTG--A-G--TGG--ATTAA-----ATTA----------TCATGGATT-------------TC---------T-CTAATT--ATCAAATT-------AACT----CAGACT--------------------------GA-----G-ATACAAGAGACTC----AGTAGATT-AATTAAATAC---AAATTTTGAAAG-TT--CT--GAGGTGTGATATGTCAGTGATGATATTCCTATCAATTGTTCC-TT-TATTGTGTTCA--TTTTAACC
gi|15 : CTGCAACGATTCA-CAAATTT---G--ATT--GA-A------------------G-CCA-TTGGATTCCGTT---TACAAGCTCA--CTAC-ATTTGAA-TAGT-AACTTA-GT-T-A--TTTAAC---A-TTTA---TTTTCAAT--------CACATTC-ACACATA-T-AATTTA---AAGGA-CACATTTTA-----ATG--AAATG--TT--GAA---------CA-------T-----T----CTTCAC----------------T-AAAT--AA----A-ATT--------------C--A-----TATA----------T----AAT--------------TC---------T-TTAACT--
gi|16 : ATG--TTTTCTTATCTTTTAT-ACCGAGCTA-TCT-TAAAC-CA---AAATACTCCCTCTCTTCGTATTCAATTGGCTT--GGAGGATCGTTGAGCACTGAATTGTCATCATGCTTCGATCT----CCATCTTGTTTG-TTTTAG----TGCC-TAAC----ATGTTGATTGGACA-TTTGTAACCAATCAGAAGCGTCGT
gi|17 : aaATTGAATAGAT----CCAAATTTTCTCAGTTG-TTAATTGAGAATCGGTCTTGCTGACTGAATAGCAGTTTGCGATACACCACGGAGAAAAACTCAGAATCGTTACACTTTT
gi|18 : TATATTGCACCTAATTAACTGAATTTGTTCAGTTG-TGAGTAGAAAATCAATTTAGTTGAAAGAATCATGGTTTTTGATGTGTTACAG--------T--GAATCATTGCACCTCT
gi|19 : AACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTAG-ACA-ATCGATTCGGTTATTTTCGA-TTCA--AT-T-ATTTTAA-TTGA-AACTTT-AT-T-A--TTCAAC---A-CTTA---CTTTCAGT--------a
gi|2 : -CAAACTTTTTG--ATT--CG-ACTCGAT--TTCGATTTTTA-ACA-TTCGATTCGGTTATTTTCGA-TTTG--AT-T-ATTTGAAGTAGG-AACTTT-AT-T-A--CTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACT-CA---AACAC-TACA----GTACAGATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTTAGAGACAAAACATTAATTTGAAAC--AAGAATACATTCT-A-A--ACA--AC--A-----TTGA----------C--TGGATTAAATCATCACGTTTT---------TGTTAACC--ATCACATT-------AACT----CAGACT-TA----GAGAAACTTCTAGAAATTAGATTTA----T----GAGACCC----AGTAGATT-AA----ATAC---AAATCTTGAAAGAT------------GTGATATTTCAGTGATTATGT---------------C-TG-TGTTA----CA--TGTTAACCAC-----TTGGTGACATT---TA------T-TACAAGATTTCAGCAAATC-------CAACGAATAATCAAATCAAA--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTTAG-AGGATCTTTAGGTACTGGATTGTCATCATGCT----CCTATGACCATCTTGTTTGTTTT-AGGGCCTAAA-TAAA----GTGTCGATCAGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTTAAGGACGTGAATAGATAACTCGTACACATT--AT--ATTATTTTATATTGAACCGAA----CCGAATTTCCTCAGTTG-TGAATCGAAAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACTGCGG--------T--GAATCGTTGCACCTCT
gi|20 : -ATTTGAT--TT-GATTTTGA-ACA-TTCGATTTGGCTGTTTTCAA-CTTG--AT-T-ATTTGAA-TACT-AAC----AT-G-G--TT-------A-TCTA---CTTTCAGT--------CATAAAC-AT-CAT--
gi|21 : AACTGAA----TCGAATTTCCTCCGTTA-TGAAGCAAGATTCGATTTGGCTGATAGAATTGTACTTTTTGATGCATT---G--------T--GAATCGTTGCATATCTacacaaac
gi|22 : AATCGATTTGGCCAACAA------GATTTTTGATGCATTGCAG--------T--GAATCGCT
gi|23 : ttcactcagagtgctgagta-ATTTGAA-TAGA-AACTTT-AT-T-A--TTCAAC---A-TTTA---CTTTCAGT--------CATTATC-AC-CAT--C-AC-TAA---AACAT-TAC
gi|24 : TCAAGAATCAATTCAGCTGACAGAAT--CAGTTTTAGATGCATGGTAT--------T--GAATTGTTTCACCT
gi|25 : TGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|26 : TGCACCGCGG--------T--GAATCGTTGCACCTCTa
gi|3 : -CAT--T-ACTT-A---AACAC-TACA----G-----ATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTCAG----------------T-AACA--AA----ATATTA--A-ACAAGA--AC--ACATTCTTTAACAACATGGAC--TGGATTAAATTA-------TCATAATTTGTT-TTAATT--ATCACATT-------AACT----CAGAC---------------TTCAAG---------TT------------GACTC----AATAGATA-AA----ATAC---AAATCTTGAAAGATTAACTTAGAGATGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-CTCTATTATGTCCA--TGTTAACCAC-----TTGGTGACACT---TACATGTAT-TGCCGGAGTTCAGTAAAACATTAGCCCAAGGAATAATCAGATCAAGTAACTGATTCAAGAGTTACATG--TTGTCTTATCTTTTAATACC----TA-CCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGA-AGGATCTTTGAGTACAGCATTGTCATCATGTT----CCT----CCACCTTGTTTGTTTT-AG----TGCC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAAATTGAAGGACGTGAATAGATAACTTATACACACT--AT--TTTCTTTTATATTGAACCGAA----CCGAATTTGATCAGTTG-TAAATCGAAAATCGATTCGGATGACAGAATCGCAGTTTTCGATGCACa
gi|4 : --TGTTCAACAA---A-TTGTTGACATT---TA------C-TACAAAAGTGAAG-AAATCGTT-GTT-----AATATTCAATACAAA--ACTCG-----------CATG--TTTTGTAACTTTTTAATACC----TA-TC-----AC-CATTAAAATACTCGGGCTTTTTGGGTTCAAGTGA-TTTGGGAAGATTTTTGAGCGCTGGATTTTCATCGTGCT----CCT----CGGCC--ATTT-TCTTTAG----TTACCTACATTATGTGTTGATTGGAAGTTTTCTAGCTAATCAGAAGCGCCGTTCAAAAG-GTCAAGGAAATGAATAAATGACGTATACACATTTAATTTATTCTTTTACATTA------------CGATTTTGTTCAGTTG-TGAATCTAGAATTGATTTGGCTGACAGAATCGCAGTTTTCGATGCATCGCGG--------T--GAATTCTTGCACCT
gi|5 : ataatagaatggccatatattcttcaaatgccagtcattaagaattaaagaaaaagaacaaatcttaaatatcctagatcagattgaatttgaacataagcttctgtaaatattttataaagaaagtatacgatgtcagaaaatcagtaaattaaatacaaacaattctagtttgattgaagcagt-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTGCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC-----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTT-CTTT-TATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTT-AGAGGATCTTTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTG-TTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTCAAAAG-TTGAA
gi|6 : CTC----AGTAGATT-AA----GTAC---AAATCTTGAAAGA-------------GTGATAATTCAGTGATGATATTCCAATCAATTGTT-CCTT-TATTACGTCCA--TGTTAACCAC-----TTGGTGACACT---TA------C-TACAAGATTTCAGCATATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATGGTTTTTCTTATCTTTTATTACC----T--TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTT-GGAGGA
gi|6 : -AAAATTCA---AAATACTCCCTC-----------AGTTGGCTTTGG-AGGATCTTTGAGTACCGGATTGTCATCATGCT----TCT----CCATCTTGTTTGTTAT-AG----TGCC-TAAA----GTGTTGATTGAACGTTTTGTAACCAATCATGATCGCCGTTAAAATG-TTGT-TGATGTGAATAGATAACTTGTACACGTT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-Taaattcaaaatactccctcagttggctttggaggatctttgagtaccggattgtcatcatgcttctccatcttgtttgttatagtgcctaaagtgttgattgaacgttttgtaaccaatcatgatcgccgttaaaatgttgttgatgtgaatagataacttgtacacgttatattcttttatattgaaccgaaccgaatttgctcagttgt
gi|7 : ctcagtagattaagtacaaatcttgaaagagtgataattcagtgatgatattccaatcaattgttcctttattacgtccatgttaaccacttggtgacacttactacaagatttcagcatatcattagcccaaggaataatcaaatcaagactgacatggtttttcttatcttttattaccttctaaaaccaaaatactccctctcttcatatttaattggctttggaggAAACTTT-CGGAATTATCGCACTCGATATTTCGATATTTA-ACAGTTCGATTCG-TTATTTTCGA--TCG--ATATAATTTGAA-TTGGAAACTTT-ATATAA--TCTAACACTA-TTTAAACTTTTCAGTAACAGCTACA-AATCAAT-CATAAT-ACCTTATT-AACACATACACCG-A-----ATAAGATATGAATTTAGGA---------CA-------TAAA-CC-ACA--TAAG----------------T-AATC--AA----A-ATTATCA-G--CGA--AC--A-----
gi|8 : ATCAAATCAAA--ACTGA-----------CATG--ATTTCTCATATTTTACTA----------------GC-CA---AAATAATCCCTCTCTTTGTATTTAATTGGCTTCGG-AGGAACTTTGAGCACTGGATTGTCATCATGCT----CCT----TCATCTTGTCCGTTTT-AG----TGAC-TAAA----GTGTTTATTGGACGTTTTGTATCCAATCAAAACCGCCGTTAAAAAG-TTGAAGGAAGTGAATAGATAATTTGTACACATT--AT--ATTC-TTTATATTGAACCGAA----CCGAATTTGCTCCGTTG-TGAATCGAGGTTCGATTTGGCTGTCAGAATCGCGGTTTTCG-TGCACCGCGA--------T--GAATCGTTGCACCTCTaaacatacaaaataaaaaaagaaataaattcacaataacactgacttggattagattatcatgaattgttattaatattatcacattaactcatagacctatcaagttaggaagaaaatatctacggaaaatttga
gi|9 : TTAA--AC---ACTTGTTAACACTCTTTA------TATGTAATATTGCAACAAATCATTGG------GTGTAATCAAAATAAA--ACTTG-----------TATA--TTTCCTAATTTTTTACTATA----TAATCTCAAGAC-CA---AAAGACTACCATTTGTTGGATTCAAGTTACTT-GGGAGGGTCTTTGAGCACTGGATTGACATCATGCC----CCT----CTATCTTGTTTG-TTTTAG----TG
blockSeqs : G CGGA ATCGC C AT C G G GC AA G A G GA A TAGC G ACT T AAC AACAGCTA A G AA G TTC CAT A GTACAG AG TA CCTTAATGC GCGTCTT AA TTA T AGACAAAACATTAATTTG C AA GAAT A AAACAAGAACACATTCTTTAACAACATGGACTGGATTAAATTATCATAATTTGT G GG ATCATAA CCTC A TAGTTA A T T ATG ACC CTAT T TTAA AAA TTGACTTA C CTC T GC C AGTAC CTT CATGTA A A CCC TA TTCAAGAGTTA GT GAGC A C T TTA TGGG TCGA ATGA T T GGCC C TTAT A T G TA TT TTAA T T AGAAAAAC CA
blockSeqs : . TCG GA C . . . A C . A . . G . ATAA A . . . . . A A . ACC TT . TTTTA . . . . T TCA T TT A . . C CTAAACAACATTGACTGGATTAAATCATCACGTTTT . . . . A TA A T T AGA ACA . . . . TTAACTTA . TTT T . C AC . . . A CCC . . . . . . . . TAG . . T T . . . . C G . . . . A . .
blockSeqs : . TTG CG T . . . G T . A . . T . TA T . . . . . . . . TTT . . CCGA . . . . A TCA C T A . . C GAGTGGATTAAATTATCATGGATTTC . . . . A CC A . T G ACC . . . . CTGGCTTA . CTT T . C AC . . . A CCC . . . . . . . . TGA . . T T . . . . C A . . . . C . .
blockSeqs : G CG C . . . G T . . . . A . TA C . . . . . . . . TGC . . G . . . . A TC T T A . . C AAATATACCAATCTTTGAATCATT . . . . A T A . . A . . . . . TTCT . TT C . C A . . . G TT . . . . . . . . TAG . . T T . . . . A A . . . . C . .
blockSeqs : . . . . . . A C . . . . G . TA T . . . . . . . . CTT . . G . . . . A CT T T C . . T AACAAGAATACATTCTAATCATC . . . . A . . . . . . . . . . T . TG . . T . . . . . C . . . . . . . . TGG . . T . . . . . T G . . . . T . .
blockSeqs : . . . . G . . . . . T . GG C . . . . . . . . TC . . G . . . . A CT T T A . . C AAAAGAACATTTACTGGATTTC . . . . . . . . . . . . . . C . . C . . . . . . . . . . . . . . TGG . . T . . . . . A G . . . . C . .
blockSeqs : . . . . . . . . . A . TA T . . . . . . . . TA . . A . . . . . CC . T T . . . CATATATAATTC . . . . . . . . . . . . . . . . CGG . . . . . . . . . . C . .
blockSeqs : . . G . CA T . . . . . . . . TT . . T . . . . . . . . . . . . . . . GGG . . . . . . . . . C . .
blockSeqs : . . . . T . . . . . . . . . . GA . . . . . . . . . .
blockSeqs : GG . . .
blockSeqCons : CG*** T****** *** CTT* A**** TGG*
originalCons : AGCTGCAACGATTCA-CAAACTTTTCG--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACT-C-----GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-C-TT-TATTATGTCCA--TGTTAACCAC---ACTTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGGGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
finalCons : AGCTGCAACGATTCA-CAAACTTTCG---ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACTT------GAGAAACTTCTAGAAAT-AGATTTA-G-ATACCAGAGACTC----AGTAGATT-AA----ATAC---AAATCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTT-CCTT-TATTATGTCCA--TGTTAACCACA----TTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTTGG-AGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAG-TTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
Alignments
lowQualScore : 1 22222222222222 11 1 11111111 111 2222222222 222222222 1111111 333333333333333333 5555555555555555555555555555555555555555555555555555555555555555555555 1111111 1111 333333 1 22222 1111 1111 222 11111111 44444 111111 22222222222 1 11111111
lowQualScore : 0 99999999999999 3 66 0 5 5 2 00 66 5 4 4 44 4 777777 3 777 4 777 44444444 4 8 99 4 333 333 4 9999999999 66 66 000000000 6666666 55 9999 3 222222222222222222 1 66 9999 5 6666666666666666666666666666666666666666666666666666666666666666666666 4 66 0 8888888 2222 5 777777 1 1 3 44444 444 2222 5 2222 000 66666666 0 5 7 0 66 22222 888 444444 5 0 3 3 0 0 66 33333333333 66 0 9999 4 4 4 777 44 8888 8888 5 5 8888 4 9999 5 1 1 77 77 8888 0 4 2 33333333 55
lowQualScore : . .............. . .. . . . . .. .. . . . .. . ...... . ... . ... ........ . . .. . ... ... . .......... .. .. ......... ....... .. .... . .................. . .. .... . ...................................................................... . .. . ....... .... . ...... . . . ..... ... .... . .... ... ........ . . . . .. ..... ... ...... . . . . . . .. ........... .. . .... . . . ... .. .... .... . . .... . .... . . . .. .. .... . . . ........ ..
lowQualScore : 0 22222222222222 0 99 2 0 0 2 44 99 0 0 0 77 0 333333 9 000 0 000 55555555 4 0 55 4 777 999 4 9999999999 99 99 000000000 2222222 44 8888 6 000000000000000000 9 11 4444 7 7777777777777777777777777777777777777777777777777777777777777777777777 4 11 7 6666666 1111 0 111111 4 4 2 77777 000 1111 7 1111 000 77777777 7 7 1 4 99 99999 888 444444 0 4 6 0 7 7 99 88888888888 11 1 4444 4 0 0 000 88 5555 5555 5 7 5555 4 4444 0 0 7 99 99 5555 7 0 0 22222222 00
consensus : AGCTGCAACGATTCA-CAAACTTT-C-G--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACTC-----GAGAAACTTCTAGAAAT-AGATTTA-GA-TACCAGAGACTC----AGTAGATT-AA----ATACAAA---TCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTTCCT-TTATTATGTCCA--TGTTAACCACA----TTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTT-GGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTT-AAAAAGTTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
Reference ( family-679 ) : AGCTGCAACGATTCA-CAAACTTT-C-G--ATT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCGA-CTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-T-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----G-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATTA------------TC---------T-TTAACT--ATCACATT-------AACT----CAGACTT-----GAGAAACTTCTAGAAAT-AGATTTA-GA-TACCAGAGACTC----AGTAGATT-AA----ATACAAA---TCTTGAAAGATTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATCAATTGTTCCT-TTATTATGTCCA--TGTTAACCACA----TTGGTGACACT---TA------T-TACAAGATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTT-GGAGGATCTTTGAGCACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTT-AAAAAGTTGAAGGANGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAGAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|1 : AGCTGCAACGATTCA-CAAATTTT-C-C---TT--CG-ACTCGAT--TTCGATTTTTG-ACA-TTCGATTCGGTTATTTTCAA-TTCG--AT-T-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTTCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTTC-T-TTATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTTAAGAGGATC-TTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTGTTTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTT-CAAAAGTTGAAGGAAGTGAATAGATAACTT-TACACATT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-TGAATCGAAAACCGATTTGGCTGACAGAATCGCGGTTTTCGATGC-CCGCGG--------T--GAATCGTTGCACCTCT
gi|10 : ATTTAATTGGCTT--GAAGGATCTTTGAGCACTGGATTGTCATCACGCT----CCT----CCATCTTGTTTGTTTT-AT----TGAC-TAAA----GTGTTGAATAGACGTTTTTTAGCCAACCAGAAGCGATTTT-AAAAAGTTGAAGGATGTGAATAGATAACTTGTACACATT--AT--ATTCTTTTGTATTGAACCGAA----TCGGATTTG--CAGTTGTTAAAACGAGAATCGGTCTGGCCGACAGAATTGCGGTTTACGATG
gi|11 : --TTCGATTTTTG-ACA-TTCGATTCGATTATTTTCG---TTGAAAT-T-ATTTGAA-AAGG-AA-----AT-T----TTGAA-----------------------------CATAATC-AT-CAT--T-A-TTCA---AAACC-TACA----G-----ATA--ATATGAATT--AGGCCTTAATGCCA-------T-TA-TTAAAATTTAAG----------------T-GACCAAAA----AAAATA--ACA--AGAATAC--A-----TT------------C--T-AATCA------------TC---------C-TTAACTGGATTAAATTATCATAAAATTCCTCCAGACTT-----AAAAAATTTATAGAAAT-aag
gi|12 : gaAGCTGCAACGATTCAGCTAACTTT----------------TCGAT--TTCGATTTTTACCCA-TTCGATCCGG--ATTTTT-A-CTAA--ACGT-ATTTGTA-CA------TTTAAC-T-AGCTTAAAC---ATTTTA---TTTTCAGT--------AACAATT-ATGCAC--TGACACCACATAACAT-T--A----G-----ATC--ATTTAAA-C--GGA---------CAGCGTCTTT-AA-TC-AAATTTT-----------------------C--AA----TCATTA--A-AT-ATA--CC--A-----ATCT----------T--TGAATCA------------TT---------A-TTGACT--A
gi|13 : ag---------T-TTAACG--ATCAAATT-------AACT----CAGACTTAGTTAGAGAAACTTCTAGAAATTAGATCTATGA-TACCAGAGATTTCTATAGTAGATTTAA----ATACAAA---TCTTGAAAGATTGACTTAGAGGTGTGATATTTCAGTGATTATATTCCAACCAATTGTTCCTGTTA--A---CCAGCTGTTGACCAC-----TTAGTGACACT---TA------T-gaaact
gi|14 : A-CT-AAA---CAA----------------TTAAAC--AA----ACATTG--A-G--TGG--ATTAA-----ATTA----------TCATGGATT-------------TC---------T-CTAATT--ATCAAATT-------AACT----CAGACT-------------------------GA-----GA-TACAAGAGACTC----AGTAGATT-AATTAAATACAAA---TTTTGAAAG-TT--CT--GAGGTGTGATATGTCAGTGATGATATTCCTATCAATTGTTCCT-TTATTGTGTTCA--TTTTAACC
gi|15 : CTGCAACGATTCA-CAAATTT----G--ATT--GA-A------------------G-CCA-TTGGATTCCGTT---TACAAGCTCA--CTAC-ATTTGAA-TAGT-AACTTA-GT-T-A--TTTAAC---A-TTTA---TTTTCAAT--------CACATTC-ACACATA-T-AATTTA---AAGGA-CACATTTTA-----ATG--AAATG--TT--GAA---------CA-------T-----T----CTTCAC----------------T-AAAT--AA----A-ATT--------------C--A-----TATA----------T----AAT--------------TC---------T-TTAACT--
gi|16 : ATG--TTTTCTTATCTTTTAT-ACCGAGCTA-TCT-TAAAC-CA---AAATACTCCCTCTCTTCGTATTCAATTGGC-TT-GGAGGATCGTTGAGCACTGAATTGTCATCATGCTTCGATCT----CCATCTTGTTTG-TTTTAG----TGCC-TAAC----ATGTTGATTGGACA-TTTGTAACCAATCAGAAGCGTCGT
gi|17 : aaATTGAATAGAT----CCAAATTTTCTCAGTTG-TTAATTGAGAATCGGTCTTGCTGACTGAATAGCAGTTTGCGATACACCACGGAGAAAAACTCAGAATCGTTACACTTTT
gi|18 : TATATTGCACCTAATTAACTGAATTTGTTCAGTTG-TGAGTAGAAAATCAATTTAGTTGAAAGAATCATGGTTTTTGATGTGTTACAG--------T--GAATCATTGCACCTCT
gi|19 : AACTTTTC-G--ATT--CG-ACTCGAT--TTCGATTTTAG-ACA-ATCGATTCGGTTATTTTCGA-TTCA--AT-T-ATTTTAA-TTGA-AACTTT-AT-T-A--TTCAAC---A-CTTA---CTTTCAGT--------a
gi|2 : -CAAACTTT-TTG--ATT--CG-ACTCGAT--TTCGATTTTTA-ACA-TTCGATTCGGTTATTTTCGA-TTTG--AT-T-ATTTGAAGTAGG-AACTTT-AT-T-A--CTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACT-CA---AACAC-TACA----GTACAGATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTTAGAGACAAAACATTAATTTGAAAC--AAGAATACATTCT-A-A--ACA--AC--A-----TTGA----------C--TGGATTAAATCATCACGTTTT---------TGTTAACC--ATCACATT-------AACT----CAGACTTA----GAGAAACTTCTAGAAATTAGATTTA----T----GAGACCC----AGTAGATT-AA----ATACAAA---TCTTGAAAGAT------------GTGATATTTCAGTGATTATGT---------------CT-GTGTTA----CA--TGTTAACCAC-----TTGGTGACATT---TA------T-TACAAGATTTCAGCAAAT-------CCAACGAATAATCAAATCAAA--ACTGA-----------CATG--TTTTCTTATCTTTTATTACC----TA-TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTT-AGAGGATCTTTAGGTACTGGATTGTCATCATGCT----CCTATGACCATCTTGTTTG-TTTTAGGGCCTAAA-TAAA----GTGTCGATCAGACGTTTTGTAACCAATCAGAAGCGCCGTT-AAAAAGTTTAAGGACGTGAATAGATAACTCGTACACATT--AT--ATTATTTTATATTGAACCGAA----CCGAATTTCCTCAGTTG-TGAATCGAAAATCGATTTGGCTGACAGAATCGCGGTTTTCGATGCACTGCGG--------T--GAATCGTTGCACCTCT
gi|20 : -ATTTGAT--TT-GATTTTGA-ACA-TTCGATTTGGCTGTTTTCAA-CTTG--AT-T-ATTTGAA-TACT-AAC----AT-G-G--TT-------A-TCTA---CTTTCAGT--------CATAAAC-AT-CAT--
gi|21 : AACTGAA----TCGAATTTCCTCCGTTA-TGAAGCAAGATTCGATTTGGCTGATAGAATTGTACTTTTTGATGCATT---G--------T--GAATCGTTGCATATCTacacaaac
gi|22 : AATCGATTTGGCCAACAA------GATTTTTGATGCATTGCAG--------T--GAATCGCT
gi|23 : ttcactcagagtgctgagta-ATTTGAA-TAGA-AACTTT-AT-T-A--TTCAAC---A-TTTA---CTTTCAGT--------CATTATC-AC-CAT--C-AC-TAA---AACAT-TAC
gi|24 : TCAAGAATCAATTCAGCTGACAGAAT--CAGTTTTAGATGCATGGTAT--------T--GAATTGTTTCACCT
gi|25 : TGCACCGCGG--------T--GAATCGTTGCACCTCT
gi|26 : TGCACCGCGG--------T--GAATCGTTGCACCTCTa
gi|3 : -CAT--T-ACTT-A---AACAC-TACA----G-----ATA--ATATGAATT--AGG---------CA-------T-AATCA-AAATTTCAG----------------T-AACA--AA----ATATTA--A-ACAAGA--AC--ACATTCTTTAACAACATGGAC--TGGATTAAATTA-------TCATAATTTGTT-TTAATT--ATCACATT-------AACT----CAGAC--------------TTCAAG---------TT------------GACTC----AATAGATA-AA----ATACAAA---TCTTGAAAGATTAACTTAGAGATGTGATATTTCAGTGATGATATTCCAATCAATTGTTCCT-CTATTATGTCCA--TGTTAACCAC-----TTGGTGACACT---TACATGTAT-TGCCGGAGTTCAGTAAAACATTAGCCCAAGGAATAATCAGATCAAGTAACTGATTCAAGAGTTACATG--TTGTCTTATCTTTTAATACC----TA-CCT-AAAAC-CA---AAATACTCCCTCTCTTCGTATTTAATTGGCTTT-GAAGGATCTTTGAGTACAGCATTGTCATCATGTT----CCT----CCACCTTGTTTG-TTTTAG----TGCC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTTAAAAAAATTGAAGGACGTGAATAGATAACTTATACACACT--AT--TTTCTTTTATATTGAACCGAA----CCGAATTTGATCAGTTG-TAAATCGAAAATCGATTCGGATGACAGAATCGCAGTTTTCGATGCACa
gi|4 : --TGTTCAACAAA----TTGTTGACATT---TA------C-TACAAAAGTGAAG-AAATCGTT-GTT-----AATATTCAATACAAA--ACTCG-----------CATG--TTTTGTAACTTTTTAATACC----TA-TC-----AC-CATTAAAATACTCGGGCTTTTTGGGTTCAAGTGATTTG-GGAAGATTTTTGAGCGCTGGATTTTCATCGTGCT----CCT----CGGCC--ATTT-TCTTTAG----TTACCTACATTATGTGTTGATTGGAAGTTTTCTAGCTAATCAGAAGCGCCGTT-CAAAAGGTCAAGGAAATGAATAAATGACGTATACACATTTAATTTATTCTTTTACATTA------------CGATTTTGTTCAGTTG-TGAATCTAGAATTGATTTGGCTGACAGAATCGCAGTTTTCGATGCATCGCGG--------T--GAATTCTTGCACCT
gi|5 : ataatagaatggccatatattcttcaaatgccagtcattaagaattaaagaaaaagaacaaatcttaaatatcctagatcagattgaatttgaacataagcttctgtaaatattttataaagaaagtatacgatgtcagaaaatcagtaaattaaatacaaacaattctagtttgattgaagcagt-ATTTGAA-TAGG-AACTTT-AT-C-A--TTTAAC---A-TTTA---CTTTCAGT--------CATAATC-AT-CAT--T-ACTGCA---AACAC-TACA----A-----ATA--ATATGAATT--AGA---------CA-------T-AA-CT-AAATTTCAG----------------T-AAAC--AA----ACATTA--A-A--AGA--AC--A-----TTTA----------C--TGGATT-------------TC---------T-TTAACT--ATCACATT-------AACT----C-GACTCC----GAGAAACTTCTAGAAAT-AGATTTA-GAATACCAGAGACTC----AGTAGATT-AA----ATACAAAAAATCTGAAAAGACTGGCTTAGAGGTGTGATATTTCAGTGATGATATTCCAATAAATTGTTCTT-TTATCATGTTCA--TGTTAACTACAGTACTTAGTGGCACT---TA------T-TACAAAATTTCAGCAAATCATTAGCCCAAGGAATAATCAAATCAGG--ACTGA-----------CACG--TTTTCTTATCTGTTATTACC----TA-TCT-AAAAC-CA---AAATGCTCCCTTTCTTCGTATTTGATTGACTTT-AGAGGATCTTTGACTACTGGATTGTCATCATGCT----CCT----CCATCTTGTTTG-TTTTAG----TGAC-TAAA----GTGTTGATTGGACGTTTTGTAACCAATCAGAAGCGCCGTT-CAAAAGTTGAA
gi|6 : CTC----AGTAGATT-AA----GTACAAA---TCTTGAAAGA-------------GTGATAATTCAGTGATGATATTCCAATCAATTGTTCCT-TTATTACGTCCA--TGTTAACCAC-----TTGGTGACACT---TA------C-TACAAGATTTCAGCATATCATTAGCCCAAGGAATAATCAAATCAAG--ACTGA-----------CATGGTTTTTCTTATCTTTTATTACC----T--TCT-AAAAC-CA---AAATACTCCCTCTCTTCATATTTAATTGGCTTT-GGAGGA
gi|6 : -AAAATTCA---AAATACTCCCTC-----------AGTTGGCTTT-GGAGGATCTTTGAGTACCGGATTGTCATCATGCT----TCT----CCATCTTGTTTGTTAT-AG----TGCC-TAAA----GTGTTGATTGAACGTTTTGTAACCAATCATGATCGCCGTT-AAAATGTTGT-TGATGTGAATAGATAACTTGTACACGTT--AT--ATTCTTTTATATTGAACCGAA----CCGAATTTGCTCAGTTG-Taaattcaaaatactccctcagttggctttggaggatctttgagtaccggattgtcatcatgcttctccatcttgtttgttatagtgcctaaagtgttgattgaacgttttgtaaccaatcatgatcgccgttaaaatgttgttgatgtgaatagataacttgtacacgttatattcttttatattgaaccgaaccgaatttgctcagttgt
gi|7 : ctcagtagattaagtacaaatcttgaaagagtgataattcagtgatgatattccaatcaattgttcctttattacgtccatgttaaccacttggtgacacttactacaagatttcagcatatcattagcccaaggaataatcaaatcaagactgacatggtttttcttatcttttattaccttctaaaaccaaaatactccctctcttcatatttaattggctttggaggAAACTTT-C-GGAATTATCGCACTCGATATTTCGATATTTA-ACAGTTCGATTCG-TTATTTTCGA--TCG--ATATAATTTGAA-TTGGAAACTTT-ATATAA--TCTAACACTA-TTTAAACTTTTCAGTAACAGCTACA-AATCAAT-CATAAT-ACCTTATT-AACACATACACCG-A-----ATAAGATATGAATTTAGGA---------CA-------TAAA-CC-ACA--TAAG----------------T-AATC--AA----A-ATTATCA-G--CGA--AC--A-----
gi|8 : ATCAAATCAAA--ACTGA-----------CATG--ATTTCTCATATTTTACTA----------------GC-CA---AAATAATCCCTCTCTTTGTATTTAATTGGCTTC-GGAGGAACTTTGAGCACTGGATTGTCATCATGCT----CCT----TCATCTTGTCCGTTTT-AG----TGAC-TAAA----GTGTTTATTGGACGTTTTGTATCCAATCAAAACCGCCGTT-AAAAAGTTGAAGGAAGTGAATAGATAATTTGTACACATT--AT--ATTC-TTTATATTGAACCGAA----CCGAATTTGCTCCGTTG-TGAATCGAGGTTCGATTTGGCTGTCAGAATCGCGGTTTTCG-TGCACCGCGA--------T--GAATCGTTGCACCTCTaaacatacaaaataaaaaaagaaataaattcacaataacactgacttggattagattatcatgaattgttattaatattatcacattaactcatagacctatcaagttaggaagaaaatatctacggaaaatttga
gi|9 : TTAAACAC-----TTGTTAACACTCTTTA------TATGTAATATTGCAACAAATCATTGG------GTGTAATCAAAATAAA--ACTTG-----------TATA--TTTCCTAATTTTTTACTATA----TAATCTCAAGAC-CA---AAAGACTACCATTTGTTGGATTCAAGTTACTTG-GGAGGGTCTTTGAGCACTGGATTGACATCATGCC----CCT----CTATCTTGTTTG-TTTTAG----TG