lowQualScore                  :                                                                                                                                                                                                                                                                                       111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                             
lowQualScore                  :                                               77777777777777777777      11  3                     5555555555555                      1                                  1       2222222222222                                                                                         000000000000000000000000000000000000000000000000000000000000000000000000000000000           33333333333333333                                      1                                                           1111111111                 11111111   2222222222222                                               1111111               11     
lowQualScore                  :                                               44444444444444444444      11  2 2           66   66 5555555555555        3     2   33  8   33     33   2 2           33   8   2   2222222222222 33 444 33 2 5555  2             33            3      7777  666               2 4        888888888888888888888888888888888888888888888888888888888888888888888888888888888 4         11111111111111111    3   3 1          3     3 3      6 1   3        3       3 3    3             3    44 3  6666 3 2222222222  9999999    33  66666666   3333333333333     99       0                555 3   3     2 1111111   9 55  1  2  11     
lowQualScore                  :                                               ....................      ..  . .           ..   .. .............        .     .   ..  .   ..     ..   . .           ..   .   .   ............. .. ... .. . ....  .             ..            .      ....  ...               . .        ................................................................................. .         .................    .   . .          .     . .      . .   .        .       . .    .             .    .. .  .... . ..........  .......    ..  ........   .............     ..       .                ... .   .     . .......   . ..  .  .  ..     
lowQualScore                  :                                               88888888888888888888      00  0 8           99   99 6666666666666        3     9   99  4   99     99   5 5           44   3   7   3333333333333 44 444 44 5 3333  5             44            3      7777  444               6 0        111111111111111111111111111111111111111111111111111111111111111111111111111111111 0         77777777777777777    6   6 6          6     6 3      7 2   3        3       3 3    3             1    22 1  5555 1 5555555555  3333333    99  55555555   2222222222222     55       9                333 1   3     8 8888888   3 00  9  7  66     
consensus                     :                  NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------TTAAAG--ACATAGTGTCTAAGAT--ATT--G-GTAAA-------ATTTTGCA-TGTTC-CAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATTA-C---A------A--A---A--A-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTT-T---T--CNNTTNNCCTGTTNCCTNCGNANTTCTCGTNNTNTTNNTTTNNNGTNAGCCANCGNCGGNNGGGTACCAGTTTT-ATATATTGTC------CTCCA--GA-CAAT-AAT-TTTATAAAGGGC-TACAA-GATCAAAA-TGATT-TCAATTTC-AAAGCGC-T-GCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--G-TCA-TTTTTGAG------GTAAA--AGATAGAC-ACTATA
Reference ( gi|4 )            :                  TCTTTATTATACAACATTTTATTGATTTC---TTCATAT----------TTAAAG--AC-TGGTGTCTAAGAT--ATT--G-C---A-------ATTTTGCA-TGTTC-CAA--AATGGT--GGCGA--AAT-T-AAAGATCATAA--CTATAAA-ATTG-C---A------A--A---A--A-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTT-T---T--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-ATATATTGTC------CTGCC--GA-CAAT-AAT-TCTATAAAGGGC-TACAA-GGTCAAAA-TTATT-TCAATTTC-AAAGCGC-T-GCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTTTTGCAAAATATTGTGAT--G-TCA-TTTTTGAG------GTAGA--AGATAAAC-GCTATA
gi|1                          :                                     TATTGATTTCCACTTAATATACAGTGTAGTTTAAAGGCAC-AGG-GTCTAAGAT--TTT--G-ATGAA-------ATTTTGCA-TGTGC-TAA--AAAGGG--GACAA--TCT-C-GAAGATTATGA--GTAGAAA--------------------------------------TTCAGAATGTGT--ACAAATACACTG-GATGCG----AT---GATAAATACAAAGT
gi|3                          :   gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacag----------TTAACG--ACATAGTGTCTAAGAT--ATT--G-GTAAA-------ATGTTGCA-TGTTC-CAA--AA-AGT--GGCAA--AAT-T-AAAGATCATAA--CTAGAAA-ATTA-C---AGATATTA--A---C--A-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATAAG----AT---AATAAATACAAAAAAAAATCCCTTTT-T---T--CATTTAACTGGTATCCTATTGACTTCGAATCGTGTATGTTTGTGTGTAGCCATCAATCAGCTGGGTACCAGTTTTATATGTTGTTATATTTCTTCC--AAACAAT-AAA-TTCAGAAAGGGC-TACAA-GGTAAAAA-TGATT-TCAATTCC-AAAGCGC-T-GCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------GTT-G-----------TTTTTGGAGTGCTTCTTGCAAAACATTGTGAC--G-TCA-TTACTGAG------GTAAA--AGATAAAC-Atctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaaattgttttatggagggctaaaacatggaaatgatcttaatttcaacatttgcagctgtagataactcattattaataaaaaaaaaaacaacaacaactttttcttgcatacatgtaatattgtgaaatcatttatagatacatgtaaatgatagaccct
gi|2                          :                      tttctatttttcattgcgttttagtattattattc----------TTAAAG--GCATAGTGTCTAAGAT--ATC--G-GTAAA-------ATTTTCCA-TGTTC-CAA--AAAGGT--GATGA--AAT-T-AAAGATCATAA--CTAGAAA-ATTA-C---A------A--A---A--A-G----TTAATTCAGAATGTTG--ACAAACACATTG-GATATG----ATTAAAATAATTACAAAATAAT-TCCCTTTTCT---C--ATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-ATATATTGTC------CTCCA--GA-CATTAAAT-TTTTTAAAGGGC-TACAA-AATCAAAA-TGATT-TCAATTTC-AAAGCAC-T-GCAG-CTTCAGATAACTC-ATAAATT-TG----T-T--------------------------G--------TTT-T------T----TTTTT--AGTTCTTCTTGTAAAATATTGTGAC--A-TAATTTTTTAAG------GTAAA--AGATAGAC-ACTGT
gi|14                         : tatttcttttatatccccaaatttacaaactaacttaagactaactaatctattcc----------TTAAAG--ACATAGTGTCTAAGAT--ATT--GGT---AG------AATTTGGA-TATTC-CAA--AAAGGC--TGCGA--AAT-T-AAAGATCATCA--TTAGAAA-ATTA-TTAAA------A--G---A--A-G----TT-ATTCAGAATGTTT--ACAAATACATTG-GATAgtct
gi|6                          :      tcatactaatcaataaatgtagtatgtaatgaagcagtaacatattgaaacagtaacattgtaaagG--ACATAGTGTCTAAGAT--ATT--G-GTAAA-------ATTTCGCA-TGTTC-CAA--AAAGGT--GGCGA--AAT-T-AAAGATCATGA--CTAGAAA-ATTA-C---A------G--A---A--A-G----TT-ATTCAGAATCTAT--ATAAACACATTG-GATATGATCAAT---AATAATTACAAAATAAT-TCCCTTTT-T---TCAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-ATATATTGT------------------------T-TCTATAAAGGGC-TACAC-GATCAAAA-TAATT-TCAATTTA-AAAG-------------TTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AATCTTTTTTTTT-T------T----TTTTTTGAGTTCTTTTTGTAAAATATTGTGAT--G-TCA-TTTTT----------T-------ATAGAC-ACTATA
gi|5                          :                                                                                GTGTCTAAGGTTTATTTCG-C---GTAAACAGATTTTGCAATGTTC-CAA--AATGTT--GGCG---AAT----AAGATCATAATCCTAGAAAGATT------A------ATGA---A--A-T----TT-ATTCAGAATGTTT--ACAAACACAT
gi|11                         :                                                                                      AAGGC--ATT--G-GTAAA-------ATTTTGCA-TGTTC-CAA--AAatctcgattccctttctctatttatactggctaccctgttcgactttagcgcatcttctttatgttggtgtagcacctcacggtgttgctatttgatgcaattaacaaaagtaggtaccagtttcctatatattgtggcaccaggacaataatatttattaagggcctacaaaggtacaaatgattcttaatttccaaagcgaatgcagcttatgatacctaataatatgggatatactacaaattttttttattttttgagtctt
gi|16                         :                                                                       caagtgataaaaatttttaT--AGT--G-C---A-------TTTGTAAA-T-TTC-CAATAAAGGGT--GGCGGGGAAT-T-AAATACC-TAA--CTA-GAA-ATTA-C---A------A--A---A--A-G----GT-ATTCAGAAAGTTTTAACAAACACATTGTGGTATA---------GATAATTACAA---AGT-TGCCTTTT-agttattcagaatgttttcatacacattggatatgataataattacaaaataattcccttttctcatttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatattgtcctccagacattaactttataaaaggctacaaggacaaaatgatttcaatttcaaagcgctgcagctttagataagtcataattgatactacaa
gi|10                         :                                                                                                     ---A-------ATTTTGCA-TCTAC-CAA--ATAGGT--GGCAA--AAT-C-AAAGATTATAA--CCAGAAA----------A------A--ACATA--A-G----TT-CTTC--AATGGTC--ACACACTCAcac
gi|20                         :                          attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgata---A-------ATTTTCCA-TGTTC-CAA--AAAGGT---GCTA--AATAT-AAAGAT-------CTAGAAA-ATCA-C---ACG----A--A---A--A-G----CT-CTTCAG-TTACTT--AC-AACACAatctatttattgtcctacagacaataattctatttaggactaaaacatcaaaatgattttgatctcatagcgctacagccataattagtactatatatttcgttttcttgcaaaatattgtaagtcatttttgacataaaatcgtagaaactatgcctta
gi|7                          :                                                                                                  ttgacaa-------ATTTTGCA-TGTTC-CGA--AAACGT--GGTGA--GAT-TGAAAAATCATAA--CTAGAAA-ATTA-C---A------A--A---A--AAG----TC-ATTCAGAATGTTG--ACATACACTTTG-GAGACG----AC---AATGATTACCAAATATT-TTTTTTTT-TCATT--TGACGTACCTGTTGACTTCGCATTGCTTGTGTTTGTGCTGTAACGTCAGCCAGAGGCGGATGGGTACCAGTTTT-ATATAT-------------CC-------AT---T-TTTTTAAAGAGC-TACAA-GGTCAAAA-TTATT-TCAATTTC-AAAGCGT-T-GCAG-CTTTAGATAACTC-ATAA--T-TA----A-T----------AC-------TATA--AA--------TTT-GTAGT--T----TTTTTTTTGTTCTTCTTGCAAATTATTGTGAT--GAT---TTTTTTAG------GTA-A--AGATAGAC-ACCAT
gi|17                         :                                                                                                           ggtaacTTGTGCA-TGTTTACAA--AA-GGT--GGCG---AAT-T-AAAGATC-TAA--CTAGAAA-TTTA-C---T------A--A---A--A-GAGCTCT-ATTCAGAAT-TTT--ATAAACgt
gi|13                         :                                                                                                           gatggttggtaaagctTTC-CAA--ATAGGTTGGATGA--ATT-T-AAAGA-CATA----TAGAAA-ATTAAC---A------A--A---A--A------CT-ATTC-GAATGTTT--A-AAACACATTG-GATATG----AA---AATAATTATAAAATATT-TCCCTTT
gi|25                         :                                                                                                          attggtaaaatttgttcttC-CAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--TTAcctcatttgaactggtcgtctgtgactcgcatttcttgtggtgtgtgtgtagccaccatttcagcggagta
gi|9                          :                                                                                                                                         T--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATTA-C---A------A--A---A--A-G----TT-ATTCAGAATGATT--TCAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-CCCCTTTT-C---T--CATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----TATTTTGTC------TTCCA--GA-CAAT-AAT-TTTATAAGGG---TACAA-GATCAAAAATGATT-TCAATTTC-AAAGCGC-T-GCAGGCTTTTGATAACTT-ATAA--T-TG----AAT----------AC-------TACA--AATTT-----TTT-T------T----TTTTTGGAGTT-TGTTTGC--AATATTGTGAT--G-ATA-TTTTTGAG------GTAAA--AG-TAGACAACTAT
gi|8                          :                                                                                                                                                     T-C-AAAGAT-ATAA--TTA---A-AT-----------------A---A--C-A----TT-ATTCAGAATGTTT--TCAAACAAATTG-GATATG----AT---AATAATTACAAAATA----------T-T---T--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----T-ATATATTGTC------CTCCA--GG-CAAT-AAT-TTTATAAAGGGC-TACAA-G--------------TCAATTTC-AAAGCGC-T-GCAG-CTTTAGATAACTC-ATAA--T-TG----A-C----------AC-------TACA--AA--------TTT-GTTGGGTT----TTTTTTTAGTTCTTTTTGCAAAATATTGTGAT--T-TCA-TTTTTGAG------GTAAA--AGATAGAC-ACTAT
gi|21                         :                                                                                                             aacccaagagtaaacagaaatttttcttgaaagacatagtg-T-AAAGATCATAA--CTAGAAA-ATCA-A---A------A--A---AAAA-G----TT-ATTCAGAATGTGT--ACAAAgcct
gi|11                         :                                                                                                                                                                               TTC-C---A------A--A---A--A-G----TT-ATTCAGAATGTTT--TCATACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTT-CTCAT--TTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-ATATATTGTC------CTCCA--GA-CATT-AAC-TTTATAAAAGGC-TACAA-GGACAAAA-TGATT-TCAATTTC-AAAGCGC-T-GCAG-CTTTAGATAAGTC-ATAA--T-TG----A-T----------AC-------TACA--A
gi|12                         :                                                                                                                                                                                            caagtgataaaaatttttaaaggcattggtaaaattttgcatgACATCT-G-TATG----AT---AATA-TTACAAA-TAAT-TCC-TGTT-C---T--CAATTTTACTGGTACCTCTGTTGATTTCAATCTCTTATGTTTCTGTGTAGCCACATCAGTAGGGTACCAGTTTT-ATTTATTGTC------CTCAC--AG-CAAT-AAT-TCTATAAAGGGC-TACAA-GATCAAAAATGATT-TCAATTTA-AAAGCGC-T-GCAG-CTTTAGATACGTCAATAA--T-TG----A-T----------AC-------TAC---AA--------TTT-G------T----TTTTTGGAGTTTTTTTTGT-AAGTATTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                      aaT-ATTTATTGTC------CTACA--GA-CAAT-AAT-TCTATTTAGGAC-TAAAA-CATCAAAA-TGATT-TTGATCTC-ATAGCGC-T-ACAG-C-----------C-ATAA--T-TA----G-T----------AC-------TATA--TA--------TTTCG------T----T-----------TTCTTGCAAAATATTGTAA---G-TCA-TTTTTGAC------ATAAA--Atttg
gi|5                          :                                                                                                                                                                                                         attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgataaattttgcatctaccaaataggtggcaaaatcaaagattataaccagaaaaaacataagttcttcaatggtcacacactcaatcT-ATATATTGTG------GCACCAGGA-CAAT-AATATTTATTAAGGGCCTACAAAGGTACAAA-TGATTCTTAATTTCCAAAGCGAAT-GCAG-CTTATGATACCTA-ATAA--TATGGGATA-T----------AC-------TACA--AA--------TTT-T------TTTTATTTTTTGAG-TCTTtcgtagaaactatgcctta
gi|1                          :                                                                                                                                                     gtgtctaaggtttatttcgcgtaaacagattttgcaatgttccaaaatgttggcgaataagatcataatcctagaaagattaatgaaatttattcagaatgtttacaaacacatatctcgattccctttctctatttatactggctaccctgttcgactttagcgcatcttctttatgttggtgtagcacctcacggtgttgctatttgatgcaattaacaaaagtaggtaccagtttccAAT-TGT-TTTATGGAGGGC-TAAAA-CATGGAAA-TGATC-TTAATTTC-AA--CAT-TTGCAG-CTGTAGATAACTC-ATTA--T-TA----A-TAAAAAAAAAAAC-------AACAACAA--------CTT--------T----TTCTTGCA-TACATGT-----AATATTGTGAA--A-TCA-TTTAT-AGATACATGTAAA--TGATAGAC-CCT
gi|15                         :                                                                    gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagtattgatttccacttaatatacagtgtagtttaaaggcacagggtctaagattttgatgaaattttgcatgtgctaaaaaggggacaatctcgaagattatgagtagaaattcagaatgtgtacaaatacactggatgcgatgataaatacaaagttctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaAAA-TTATT-TTGATTTC-ACAGTGC-T-ACAG-CTATAGATAAATC-GTAA--T-TA----A-T----------ACTACCGGGTACA--TA--------TTT-G------T----T-----------TTCTTGCAAAATATTGTAAA--G-TCA-ATTTTGAC------ATAAATTCG-TAGAC-ACTAT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                           cattgtcctataattataatatttttttacaatgatcatccaattttcAGGTAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------G----TTTTTGGAGTTCCTTTTTCAAAATATTGTGAT--G-TCA-TTTTTGA--------TAGA--gcct
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ----------AC-------TACA--TA--------TTC-G------T----TTTCT-----------TGCAAAATATTGT-ATTAG-TCA--TTTTGAG------ATTTA--AAAAAAAC-tactatgcctt
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGGAGTTCTTCTTGCAAAATATTGTGAT--G-TCccaacaaaaccctagatactatgctttta
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGTTCTTTTAGCAAAATATAGTGAT--G-TCA-TTtatgatagccactatgtct

Unaligned ( gi|24 ): ACATTCATTGTTTATTTCCAAAATCGATTTAACTATGTCTTTAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              222       3333333333333                                                                                                              1111111111                                                                                         55555555555555555555555555555555555555555555555555555555555     1111111                1111          111111111                                                                                                                1111111111                 11111111   2222222222222                                            111111111111                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              000  0    6666666666666                     55   44 3     555    2  33  2        33      33    444   2 2           33       2   33 2 2222222222    2 5555  2             33            3      7777  555               3 3        0  22  66666666666666666666666666666666666666666666666666666666666     5555555 1 22           2222          222222222   3   888    3   3      3      3  44   3 2  3    3     3        3      3 3     3             2    33 2  6666 2 1111111111  8888888    33  55555555   0000000000000     55  0 0       0           444    6     555555555555 2  88888 2     3      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              ...  .    .............                     ..   .. .     ...    .  ..  .        ..      ..    ...   . .           ..       .   .. . ..........    . ....  .             ..            .      ....  ...               . .        .  ..  ...........................................................     ....... . ..           ....          .........   .   ...    .   .      .      .  ..   . .  .    .     .        .      . .     .             .    .. .  .... . ..........  .......    ..  ........   .............     ..  . .       .           ...    .     ............ .  ..... .     .      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              555  8    0000000000000                     55   22 1     000    9  99  9        44      44    666   4 4           22       5   22 4 5555555555    4 0000  4             22            1      1111  888               6 6        9  00  11111111111111111111111111111111111111111111111111111111111     9999999 4 00           7777          555555555   3   222    1   1      1      1  22   1 5  1    1     1        1      1 1     1             9    99 9  1111 9 7777777777  7777777    77  44444444   1111111111111     99  1 4       8           333    2     333333333333 2  88888 3     3      
consensus                     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTCATTT--GNN----CT-GTNGCCT-----NCGCANTTC---TCGTGN-TNTTNNTNTNNCGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
Reference ( family-6787 )     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTTTCNNTT--NNC----CT-GTTNCCT-----NCGNANTTC---TCGTNN-TNTTNNTTTNNNGTN-AGCCANCG--N-CGGNNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GATC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                    TATTGATTTCCACTTAATATACAGTGTAGTT--TAAAGGCACAGGGTCTAAGAT--TTT--G-ATGAA---ATTT-TG--CA-TGTGCTAA--AAAGGG--GACAA--TCT-C-GAAGATTATGA--GTAGAA---------------------------------ATTCAGAATGTGT--ACAAATACACTG-GATGCG----AT---GATAAATACAAAGT
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagAAT-TGT-TTTATG-GAGGGC-TA--AAA-CATG-GAAA-TGATC-TTAATTTC-AA--CATT-TGCAG-CTGTAGATAACTC-ATTA--T-TA----A-TAAAAAAAAAAAC-------AACAACAA--------CTT--------T----TTCTTGCA----TACATGT--AATATTGTGAA--ATCA-TTTAT-AGATACATG--TAAA--T--GATAGAC-CCTtctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaaattgttttatggagggctaaaacatggaaatgatcttaatttcaacatttgcagctgtagataactcattattaataaaaaaaaaaacaacaacaactttttcttgcatacatgtaatattgtgaaatcatttatagatacatgtaaatgatagaccct
gi|10                         : gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagtattgatttccacttaatatacagtgtagtttaaaggcacagggtctaagattttgatgaaattttgcatgtgctaaaaaggggacaatctcgaagattatgagtagaaattcagaatgtgtacaaatacactggatgcgatgataaatacaaagttctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaTGATATG---------T--TAAAGGTATAGAAT-TACGAT--TTT--G-ATAAA----TTT-TG--CA-TCTACCAA--ATAGGT--GGCAA--AAT-C-AAAGATTATAA--CCAGAAA-A-A--A-C----------ATAA-G----TT-CTTC--AATGGTC--ACACACTCA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    attacgaaaaagtcatgaaatgcggaactatgttgaaaacTC---TATTTATTGT-------C-CTA-CAG--ACAAT-AAT-TCTATT-TAGGAC-TA--AAA-CATC-AAAA-TGATT-TTGATCTC-ATAGCG-C-TACAG-C-----------C-ATAA--T-TA----G-T----------AC-------TATA--TA--------TTTCG------T----T-----------TTCTTGCAAAATATTGTAA---GTCA-TTTTTGAC------A--TAAA--ATCG-TAGAA-ACTATatctatttattgtcctacagacaataattctatttaggactaaaacatcaaaatgattttgatctcatagcgctacagccataattagtactatatatttcgttttcttgcaaaatattgtaagtcatttttgacataaaatcgtagaaactatgcctta
gi|11                         :                                                                                                                                                                                                                                        attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgataaattttgcatctaccaaataggtggcaaaatcaaagattataaccagaaaaaacataagttcttcaatggtcacacactcaaAAGGC--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGgcctta
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                         caagtgataaaaatttttaTT--C-C---A------AAAA-G----TT-ATTCAGAATGTTT--TCATACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTCATTT--GNN----NN-NNNNNNN-----NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNNNNNTATATATTGT-------C-CTC-CAG--ACATT-AAC-TTTATA-AAAGGC-TA--CAA-GGAC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAAGTC-ATAA--T-TG----A-T----------AC-------TACA--Attattcagaatgttttcatacacattggatatgataataattacaaaataattcccttttctcatttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatattgtcctccagacattaactttataaaaggctacaaggacaaaatgatttcaatttcaaagcgctgcagctttagataagtcataattgatactacaa
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    caagtgataaaaatttttaaaggcattggtaaaattttgcatgACATCT-G-TATG----AT---AATA-TTACAAA-TAAT-TCC-TGTTCTCAATT--TTA----CT-GGTACCT-----CTGTTGATT---TCAATC-TCTTATGTTTCTGTGTAGCCA-CA--T-CAGTAGGGTACCAGTTT---TATTTATTGT-------C-CTCACAG---CAAT-AAT-TCTATA-AAGGGC-TA--CAA-GATCAAAAA-TGATT-TCAATTTA-AAAGCG-C-TGCAG-CTTTAGATACGTCAATAA--T-TG----A-T----------AC-------TAC---AA--------TTT-G------T----TTTTTGGAGTTTTTTTTGT-AAGTATTGT
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                        aa--ATT--G-GTAAA---ATTTGTT--C--TTTTCCAA--ATAGGTTGGATGA--ATT-T-AAAGA-CATA----TAGAAA-ATT--AAC---A------AAAA------CT-ATTC-GAATGTTT--A-AAACACATTG-GATATG----AA---AATAATTATAAAATATT-TCCCTTTCCTCATTT--GAA----CTGGTCGTCTGTGACTCGCATTTC---TTGTGG-TGTGTGT-----GT--AGCCACCATTT-CAGCGGAGTAtttg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGACATAGTGTCTAAGAT--ATT--G-GTAGA---ATTT-GG---A-TATTCCAA--AAAGGC--TGCGA--AAT-T-AAAGATCATCA--TTAGAAA-ATT--A-TTAAA------AGAA-G----TT-ATTCAGAATGTTT--ACAAATACATTG-GATA
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tcatactaatcaataaatgtagtatgtaatgaagcagtaacatattgaaacagtaacattgtaaagATTGT-------C-CTA-TAATTATAAT-ATT-TTTTTACAATGAT-CATCCAA-TTTT-CAAA-TTATT-TTGATTTC-ACAGTG-C-TACAG-CTATAGATAAATC-GTAA--T-TA----A-T----------ACTACCGGGTACA--TA--------TTT-G------T----T-----------TTCTTGCAAAATATTGTAAA--GTCA-ATTTTGAC------A--TAAATTC--G-TAGAC-ACTAT
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                        cTTCCAATAAAGGGT--GGCGGGGAAT-T-AAATACC-TAA--CTAGAAA--TT--A-C---A------AAAA-G----GT-ATTCAGAAAGTTTTAACAAACACATTGTGGTATA---------GATAATTACAA---AGT-TGCCTTTTgcct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                             tagtgcatttgtaaatTT--G-GTAAA---GCTT-TGTGCA-TGTTTACA--AAAGGT--GGCG---AAT-T-AAAGATC-TAA--CTAGAAA-TTT--A-C---T------AAAA-GAGCTCT-ATTCAGAAT-TTT--ATAAACcac
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gatggAGGTAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------G----TTTTTGGAGTTCCTTTTTCAAAATATTGTGAT--GTCA-TTTTT---------------------GATAGAT-ACTAT
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ----------AC-------TACA--TA--------TTC-G------T----TTT-----------CTTGCAAAATATTGT-ATTAGTCA--TTTTGAG------ATTTAAA--A--AAgcctt
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGGCATAGTGTCTAAGAT--ATC--G-GTAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT--GATGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TTAATTCAGAATGTTG--ACAAACACATTG-GATATG----ATTAAAATAATTACAAAATAAT-TCCCTTTTCTCATTTG-NNN----NN-NNNNNNN-----NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--ACATTAAAT-TTTTTA-AAGGGC-TA--CAA-AATC-AAAA-TGATT-TCAATTTC-AAAGCA-C-TGCAG-CTTCAGATAACTC-ATAAATT-TG----T-T--------------------------G--------TTT-T------T----TTTTT--AGTTCTTCTTGTAAAATATTGTGAC--ATAATTTTTTAAG------G--TAAA--A--GATAGAC-ACTGTaacccaacaaaaccctagatactatgctttta
gi|20                         :                                                                                                                                                                                                                                                                                                                                                     tatttcttttatatccccaaatttacaaactaacttaagactaactaatctattccTT--G-ACAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT---GCTA--AATAT-AAAGAT-------CTAGAAA-ATC--A-C---ACG----AAAA-G----CT-CTTCAG-TTACTT--AC-AACACAgtct
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                   -T-AAAGATCATAA--CTAGAAA-ATCAAA-A---A------AAAA-G----TT-ATTCAGAATGTGT--ACAAA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGGAGTTCTTCTTGCAAAATATTGTGAT--GTC
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAGTTCTTTTAGCAAAATATAGTGAT--GTCA-TT------------------------GATGGAC-ACTATAtatgatagccactatgtct
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--TTAccttta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                 TTATTAT----------TCTTAACGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATGT-TG--CA-TGTTCCAA--AAAG-T--GGCAA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---AGATATTAACA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATAAG----AT---AATAAATACAAAAAAAAATCCCTTTTTTCATTT--AAC----TG-GTATCCT-----ATTGACTTCGAATCGTGTATGTTTGT---GTGT--AGCCATCA--ATCAGCTGGGTACCAGTTT---TATATGTTGTTATATTTC-TTC-CAA--ACAAT-AAA-TTCAGA-AAGGGC-TA--CAA-GGTA-AAAA-TGATT-TCAATTCC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------GTT-G-----------TTTTTGGAGTGCTTCTTGCAAAACATTGTGAC--GTCA-TTACTGAG------G--TAAA--A--GATAAAC-AC
gi|4                          :                                                                                                                                                                                                                                                                                                                          tttctatttttcattgcgttttagtaTATTGATTTC---TTCATAT----------T--TAAAGAC-TGGTGTCTAAGAT--ATT--G-C---A---ATTT-TG--CA-TGTTCCAA--AATGGT--GGCGA--AAT-T-AAAGATCATAA--CTATAAA-ATT--G-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTTTNNNNN--NNN----NN-NNNNNNN-----NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTG-CCG--ACAAT-AAT-TCTATA-AAGGGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTTTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAGA--A--GATAAAC-GCTATA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                            tctttattatacaacatttGTGTCTAAGGTTTATTTCGCGTAAACAGATTT-TG--CAATGTTCCAA--AATGTT--GGCG---AAT----AAGATCATAATCCTAGAAAGATT--A-A---T------GAAA-T----TT-ATTCAGAATGTTT--ACAAACACAT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTACCAGTTTCC-TATATATTGT-------GGCAC-CAGG-ACAAT-AATATTTATT-AAGGGCCTA--CAAAGGTA-CAAA-TGATTCTTAATTTCCAAAGCG-AATGCAG-CTTATGATACCTA-ATAA--TATGGGATA-T----------AC-------TACA--AA--------TTT-T------TTTTATTTTTTGAG-TCTTatctcgattccctttctctatttatactggctaccctgttcgactttagcgcatcttctttatgttggtgtagcacctcacggtgttgctatttgatgcaattaacaaaagtaggtaccagtttcctatatattgtggcaccaggacaataatatttattaagggcctacaaaggtacaaatgattcttaatttccaaagcgaatgcagcttatgatacctaataatatgggatatactacaaattttttttattttttgagtctt
gi|6                          :                                                                                                                                                      gtgtctaaggtttatttcgcgtaaacagattttgcaatgttccaaaatgttggcgaataagatcataatcctagaaagattaatgaaatttattcagaatgtttacaaacacatatctcgattccctttctctatttatactggctaccctgttcgactttagcgcatcttctttatgttggtgtagcacctcacggtgttgctatttgatgcaattaacaaaagtaGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-CG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATGA--CTAGAAA-ATT--A-C---A------GAAA-G----TT-ATTCAGAATCTAT--ATAAACACATTG-GATATGATCAAT---AATAATTACAAAATAAT-TCCCTTTTTTCAATTTNNNN----NN-NNNNNNN-----NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT--------------------------T-TCTATA-AAGGGC-TA--CAC-GATC-AAAA-TAATT-TCAATTTA-AAAG-------------TTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AATCTTTTTTTTT-T------T----TTTTTTGAGTTCTTTTTGTAAAATATTGTGAT--GTCA-TTTTT------------T---------ATAGAC-ACTATA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                               --G-GTAAC---ATTT-TG--CA-TGTTCCGA--AAACGT--GGTGA--GAT-TGAAAAATCATAA--CTAGAAA-ATT--A-C---A------AAAAAG----TC-ATTCAGAATGTTG--ACATACACTTTG-GAGACG----AC---AATGATTACCAAATA-T-TTTTTTTTTTCATTT--GACGTACCT-GTTGACT-----TCGCATTGC---TTGTGT-TTGTGCTGTAACGTC-AGCCAGAG--G-CGGATGGGTACCAGTTT---TATATAT--------------C-CA-------T---T-TTTTTA-AAGAGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-T-TGCAG-CTTTAGATAACTC-ATAA--T-TA----A-T----------AC-------TATA--AA--------TTT-GTAGT--T----TTTTTTTTGTTCTTCTTGCAAATTATTGTGAT--G--ATTTTTTTAG------G--T-AA--A--GATAGAC-ACCAT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                      AA---ATTT-TT--CT-TG----AA--AGACAT--AGTG-----T-C-AAAGAT-ATAA--TTA---A-ATA--A-C---A----------------TT-ATTCAGAATGTTT--TCAAACAAATTG-GATATG----AT---AATAATTACAAAATA--------------TTTN--NNN----NN-NNNNNNN-----NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--GCAAT-AAT-TTTATA-AAGGGC-TA--CAA-G---------------TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-C----------AC-------TACA--AA--------TTT-GTTGGGTT----TTTTTTTAGTTCTTTTTGCAAAATATTGTGAT--TTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                     aacccaagagtaaacagT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGATT--TCAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-CCCCTTTTCTCATTT--ATN----NN-NNNNNNN-----NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNT-------ATTTTGT-------C-TTC-CAG--ACAAT-AAT-TTTATA-AGGG---TA--CAA-GATC-AAAAATGATT-TCAATTTC-AAAGCG-C-TGCAGGCTTTTGATAACTT-ATAA--T-TG----AAT----------AC-------TACA--AATTT-----TTT-T------T----TTTTTGGAGTT-TGTTTGC--AATATTGTGAT--GATA-TTTTTGAG------G--TAAA--A--G-TAGACAACTATgcct

Unaligned ( gi|24 ): ACATTCATTGTTTATTTCCAAAATCGATTTAACTATGTCTTTAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              222       3333333333333                                                                                                              1111111111                                                                                            44444444444444444444444444444444444444444444444444444444444     1111111                1111          111111111                                                                                                                1111111111                 11111111   2222222222222                                            111111111111                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              000  0    6666666666666                     55   44 3     555    2  33  2        33      33    444   2 2           33       2   33 2 2222222222    2 5555  2             33            3      7777  555               3 3            55    77777777777777777777777777777777777777777777777777777777777     0000000   22  0        2222          222222222   3   888    3   3      3      3  44   333  3    3     3        3      3 3     3             2    33 2  6666 2 1111111111  8888888    33  55555555   0000000000000     55  0 0       0           444    6     555555555555 2  88888 2     3      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              ...  .    .............                     ..   .. .     ...    .  ..  .        ..      ..    ...   . .           ..       .   .. . ..........    . ....  .             ..            .      ....  ...               . .            ..    ...........................................................     .......   ..  .        ....          .........   .   ...    .   .      .      .  ..   ...  .    .     .        .      . .     .             .    .. .  .... . ..........  .......    ..  ........   .............     ..  . .       .           ...    .     ............ .  ..... .     .      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              555  8    0000000000000                     55   22 1     000    9  99  9        44      44    666   4 4           22       5   22 4 5555555555    4 0000  4             22            1      1111  888               6 6            55    77777777777777777777777777777777777777777777777777777777777     3333333   22  5        7777          555555555   3   222    1   1      1      1  22   222  1    1     1        1      1 1     1             9    99 9  1111 9 7777777777  7777777    77  44444444   1111111111111     99  1 4       8           333    2     333333333333 2  88888 3     3      
consensus                     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTCA--TTTG-NN----CT-GTNGCCT-----NCGC--ATTTC---TCGTGN-TGTTNNTGTTNCGTG-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
Reference ( family-6787 )     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTCA--TTTG-NN----CT-GTNGCCT-----NCGC--ANTTC---TCGTGN-TNTTNNTNTNNCGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                    TATTGATTTCCACTTAATATACAGTGTAGTT--TAAAGGCACAGGGTCTAAGAT--TTT--G-ATGAA---ATTT-TG--CA-TGTGCTAA--AAAGGG--GACAA--TCT-C-GAAGATTATGA--GTAGAA---------------------------------ATTCAGAATGTGT--ACAAATACACTG-GATGCG----AT---GATAAATACAAAGT
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagAAT-TGT-TTTATG-GAGGGC-TA--AAA-CATG-GAAA-TGATC-TTAATTTC-AA--CATT-TGCAG-CTGTAGATAACTC-ATTA--T-TA----A-TAAAAAAAAAAAC-------AACAACAA--------CTT--------T----TTCTTGCA----TACATGT--AATATTGTGAA--ATCA-TTTAT-AGATACATG--TAAA--T--GATAGAC-CCTtctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaaattgttttatggagggctaaaacatggaaatgatcttaatttcaacatttgcagctgtagataactcattattaataaaaaaaaaaacaacaacaactttttcttgcatacatgtaatattgtgaaatcatttatagatacatgtaaatgatagaccct
gi|10                         : gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagtattgatttccacttaatatacagtgtagtttaaaggcacagggtctaagattttgatgaaattttgcatgtgctaaaaaggggacaatctcgaagattatgagtagaaattcagaatgtgtacaaatacactggatgcgatgataaatacaaagttctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaTGATATG---------T--TAAAGGTATAGAAT-TACGAT--TTT--G-ATAAA----TTT-TG--CA-TCTACCAA--ATAGGT--GGCAA--AAT-C-AAAGATTATAA--CCAGAAA-A-A--A-C----------ATAA-G----TT-CTTC--AATGGTC--ACACACTCA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       attacgaaaaagtcatgaaatgcggaactatgttgaaaacTC---TATTTATTGT-------C-CTA-CAG--ACAAT-AAT-TCTATT-TAGGAC-TA--AAA-CATC-AAAA-TGATT-TTGATCTC-ATAGCG-C-TACAG-C-----------C-ATAA--T-TA----G-T----------AC-------TATA--TA--------TTTCG------T----T-----------TTCTTGCAAAATATTGTAA---GTCA-TTTTTGAC------A--TAAA--ATCG-TAGAA-ACTATatctatttattgtcctacagacaataattctatttaggactaaaacatcaaaatgattttgatctcatagcgctacagccataattagtactatatatttcgttttcttgcaaaatattgtaagtcatttttgacataaaatcgtagaaactatgcctta
gi|11                         :                                                                                                                                                                                                                                        attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgataaattttgcatctaccaaataggtggcaaaatcaaagattataaccagaaaaaacataagttcttcaatggtcacacactcaaAAGGC--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGgcctta
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                         caagtgataaaaatttttaTT--C-C---A------AAAA-G----TT-ATTCAGAATGTTT--TCATACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTCA--TTTG-NN----NN-NNNNNNN-----NNNN--NNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNNNNNTATATATTGT-------C-CTC-CAG--ACATT-AAC-TTTATA-AAAGGC-TA--CAA-GGAC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAAGTC-ATAA--T-TG----A-T----------AC-------TACA--Attattcagaatgttttcatacacattggatatgataataattacaaaataattcccttttctcatttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatattgtcctccagacattaactttataaaaggctacaaggacaaaatgatttcaatttcaaagcgctgcagctttagataagtcataattgatactacaa
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    caagtgataaaaatttttaaaggcattggtaaaattttgcatgACATCT-G-TATG----AT---AATA-TTACAAA-TAAT-TCC-TGTTCTCA--ATTT-TA----CT-GGTACCT-----CTGTTGATTTCAA-TC-----TCTTATGTTTCTGTGTAGCCA-CA--T-CAGTAGGGTACCAGTTT---TATTTATTGT-------C-CTCACAG---CAAT-AAT-TCTATA-AAGGGC-TA--CAA-GATCAAAAA-TGATT-TCAATTTA-AAAGCG-C-TGCAG-CTTTAGATACGTCAATAA--T-TG----A-T----------AC-------TAC---AA--------TTT-G------T----TTTTTGGAGTTTTTTTTGT-AAGTATTGT
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                        aa--ATT--G-GTAAA---ATTTGTT--C--TTTTCCAA--ATAGGTTGGATGA--ATT-T-AAAGA-CATA----TAGAAA-ATT--AAC---A------AAAA------CT-ATTC-GAATGTTT--A-AAACACATTG-GATATG----AA---AATAATTATAAAATATT-TCCCTTTCCTCA--TTTG-AA----CTGGTCGTCTGTGACTCGC--ATTTC---TTGTGG-TGTGTGTGT-------AGCCACCATTT-CAGCGGAGTAtttg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGACATAGTGTCTAAGAT--ATT--G-GTAGA---ATTT-GG---A-TATTCCAA--AAAGGC--TGCGA--AAT-T-AAAGATCATCA--TTAGAAA-ATT--A-TTAAA------AGAA-G----TT-ATTCAGAATGTTT--ACAAATACATTG-GATA
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tcatactaatcaataaatgtagtatgtaatgaagcagtaacatattgaaacagtaacattgtaaagATTGT-------C-CTA-TAATTATAAT-ATT-TTTTTACAATGAT-CATCCAA-TTTT-CAAA-TTATT-TTGATTTC-ACAGTG-C-TACAG-CTATAGATAAATC-GTAA--T-TA----A-T----------ACTACCGGGTACA--TA--------TTT-G------T----T-----------TTCTTGCAAAATATTGTAAA--GTCA-ATTTTGAC------A--TAAATTC--G-TAGAC-ACTAT
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                        cTTCCAATAAAGGGT--GGCGGGGAAT-T-AAATACC-TAA--CTAGAAA--TT--A-C---A------AAAA-G----GT-ATTCAGAAAGTTTTAACAAACACATTGTGGTATA---------GATAATTACAA---AGT-TGCCTTTTCgcct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                             tagtgcatttgtaaatTT--G-GTAAA---GCTT-TGTGCA-TGTTTACA--AAAGGT--GGCG---AAT-T-AAAGATC-TAA--CTAGAAA-TTT--A-C---T------AAAA-GAGCTCT-ATTCAGAAT-TTT--ATAAACac
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gatggAGGTAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------G----TTTTTGGAGTTCCTTTTTCAAAATATTGTGAT--GTCA-TTTTT---------------------GATAGAT-ACTAT
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ----------AC-------TACA--TA--------TTC-G------T----TTT-----------CTTGCAAAATATTGT-ATTAGTCA--TTTTGAG------ATTTAAA--A--AAgcctt
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGGCATAGTGTCTAAGAT--ATC--G-GTAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT--GATGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TTAATTCAGAATGTTG--ACAAACACATTG-GATATG----ATTAAAATAATTACAAAATAAT-TCCCTTTTCTCA--TTTGNNN----NN-NNNNNNN-----NNNN--NNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--ACATTAAAT-TTTTTA-AAGGGC-TA--CAA-AATC-AAAA-TGATT-TCAATTTC-AAAGCA-C-TGCAG-CTTCAGATAACTC-ATAAATT-TG----T-T--------------------------G--------TTT-T------T----TTTTT--AGTTCTTCTTGTAAAATATTGTGAC--ATAATTTTTTAAG------G--TAAA--A--GATAGAC-ACTGTaacccaacaaaaccctagatactatgctttta
gi|20                         :                                                                                                                                                                                                                                                                                                                                                     tatttcttttatatccccaaatttacaaactaacttaagactaactaatctattccTT--G-ACAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT---GCTA--AATAT-AAAGAT-------CTAGAAA-ATC--A-C---ACG----AAAA-G----CT-CTTCAG-TTACTT--AC-AACACAgtct
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                   -T-AAAGATCATAA--CTAGAAA-ATCAAA-A---A------AAAA-G----TT-ATTCAGAATGTGT--ACAAA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGGAGTTCTTCTTGCAAAATATTGTGAT--GTC
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGTTCTTTTAGCAAAATATAGTGAT--GTCA-TT------------------------GATGGAC-ACTATAtatgatagccactatgtct
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--TTAccttta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                 TTATTAT----------TCTTAACGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATGT-TG--CA-TGTTCCAA--AAAG-T--GGCAA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---AGATATTAACA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATAAG----AT---AATAAATACAAAAAAAAATCCCTTTTTTCA--TTTA-AC----TG-GTATCCT-----ATTG--ACTTCGAATCGTGTATGTTTGTGT---GT--AGCCATCA--ATCAGCTGGGTACCAGTTT---TATATGTTGTTATATTTC-TTC-CAA--ACAAT-AAA-TTCAGA-AAGGGC-TA--CAA-GGTA-AAAA-TGATT-TCAATTCC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------GTT-G-----------TTTTTGGAGTGCTTCTTGCAAAACATTGTGAC--GTCA-TTACTGAG------G--TAAA--A--GATAAAC-AC
gi|4                          :                                                                                                                                                                                                                                                                                                                          tttctatttttcattgcgttttagtaTATTGATTTC---TTCATAT----------T--TAAAGAC-TGGTGTCTAAGAT--ATT--G-C---A---ATTT-TG--CA-TGTTCCAA--AATGGT--GGCGA--AAT-T-AAAGATCATAA--CTATAAA-ATT--G-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTTTNN--NNNN-NN----NN-NNNNNNN-----NNNN--NNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTG-CCG--ACAAT-AAT-TCTATA-AAGGGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTTTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAGA--A--GATAAAC-GCTATA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                            tctttattatacaacatttGTGTCTAAGGTTTATTTCGCGTAAACAGATTT-TG--CAATGTTCCAA--AATGTT--GGCG---AAT----AAGATCATAATCCTAGAAAGATT--A-A---T------GAAA-T----TT-ATTCAGAATGTTT--ACAAACACAT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         C---TCACGG-TGTTGCTATTTGATGCAATTAACA--A-AAGTAGG-TACCAGTTTCC-TATATATTGT-------GGCAC-CAGG-ACAAT-AATATTTATT-AAGGGCCTA--CAAAGGTA-CAAA-TGATTCTTAATTTCCAAAGCG-AATGCAG-CTTATGATACCTA-ATAA--TATGGGATA-T----------AC-------TACA--AA--------TTT-T------TTTTATTTTTTGAG-TCTTatctcgattccctttctctatttatactggctaccctgttcgactttagcgcatcttctttatgttggtgtagcacctcacggtgttgctatttgatgcaattaacaaaagtaggtaccagtttcctatatattgtggcaccaggacaataatatttattaagggcctacaaaggtacaaatgattcttaatttccaaagcgaatgcagcttatgatacctaataatatgggatatactacaaattttttttattttttgagtctt
gi|6                          :                                                                                                                                                                                           gtgtctaaggtttatttcgcgtaaacagattttgcaatgttccaaaatgttggcgaataagatcataatcctagaaagattaatgaaatttattcagaatgtttacaaacacatatctcgattccctttctctatttatactggctaccctgttcgactttagcgcatcttctttatgttggtgtagcacGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-CG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATGA--CTAGAAA-ATT--A-C---A------GAAA-G----TT-ATTCAGAATCTAT--ATAAACACATTG-GATATGATCAAT---AATAATTACAAAATAAT-TCCCTTTTTTCAATTTNN-NN----NN-NNNNNNN-----NNNN--NNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT--------------------------T-TCTATA-AAGGGC-TA--CAC-GATC-AAAA-TAATT-TCAATTTA-AAAG-------------TTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AATCTTTTTTTTT-T------T----TTTTTTGAGTTCTTTTTGTAAAATATTGTGAT--GTCA-TTTTT------------T---------ATAGAC-ACTATA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                               --G-GTAAC---ATTT-TG--CA-TGTTCCGA--AAACGT--GGTGA--GAT-TGAAAAATCATAA--CTAGAAA-ATT--A-C---A------AAAAAG----TC-ATTCAGAATGTTG--ACATACACTTTG-GAGACG----AC---AATGATTACCAAATA-T-TTTTTTTTTTCA--TTTG-ACGTACCT-GTTGACT-----TCGC--ATTGC---TTGTGT-TTGTGCTGTAACGTC-AGCCAGAG--G-CGGATGGGTACCAGTTT---TATATAT--------------C-CA-------T---T-TTTTTA-AAGAGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-T-TGCAG-CTTTAGATAACTC-ATAA--T-TA----A-T----------AC-------TATA--AA--------TTT-GTAGT--T----TTTTTTTTGTTCTTCTTGCAAATTATTGTGAT--G--ATTTTTTTAG------G--T-AA--A--GATAGAC-ACCAT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                      AA---ATTT-TT--CT-TG----AA--AGACAT--AGTG-----T-C-AAAGAT-ATAA--TTA---A-ATA--A-C---A----------------TT-ATTCAGAATGTTT--TCAAACAAATTG-GATATG----AT---AATAATTACAAAATA------------T----TTNN-NN----NN-NNNNNNN-----NNNN--NNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--GCAAT-AAT-TTTATA-AAGGGC-TA--CAA-G---------------TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-C----------AC-------TACA--AA--------TTT-GTTGGGTT----TTTTTTTAGTTCTTTTTGCAAAATATTGTGAT--TTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                     aacccaagagtaaacagT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGATT--TCAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-CCCCTTTTCTCA--TTTA-TN----NN-NNNNNNN-----NNNN--NNNNN---NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNT-------ATTTTGT-------C-TTC-CAG--ACAAT-AAT-TTTATA-AGGG---TA--CAA-GATC-AAAAATGATT-TCAATTTC-AAAGCG-C-TGCAGGCTTTTGATAACTT-ATAA--T-TG----AAT----------AC-------TACA--AATTT-----TTT-T------T----TTTTTGGAGTT-TGTTTGC--AATATTGTGAT--GATA-TTTTTGAG------G--TAAA--A--G-TAGACAACTATgcct

Unaligned ( gi|24 ): ACATTCATTGTTTATTTCCAAAATCGATTTAACTATGTCTTTAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              222       3333333333333                                                                                                           1111111111                                                                            111111                   77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777     1111111                1111          111111111                                                                                                                1111111111                 11111111   2222222222222                                            111111111111                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              000  0    6666666666666                     55   44 3     555    2  33  2        33      33     33   2 2                     33 2 0000000000    2 5555  2             33           33 2      6666  555            555   000000 3           3 55  99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999     0000000   22  0        2222          222222222   3   888    3   3      3      3  44   333  3    3     3        3      3 3     3             2    33 2  6666 2 1111111111  8888888    33  55555555   0000000000000     55  0 0       0           444    6     555555555555 2  88888 2     3      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              ...  .    .............                     ..   .. .     ...    .  ..  .        ..      ..     ..   . .                     .. . ..........    . ....  .             ..           .. .      ....  ...            ...   ...... .           . ..  ...............................................................................................     .......   ..  .        ....          .........   .   ...    .   .      .      .  ..   ...  .    .     .        .      . .     .             .    .. .  .... . ..........  .......    ..  ........   .............     ..  . .       .           ...    .     ............ .  ..... .     .      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              555  8    0000000000000                     55   22 1     000    9  99  9        44      44     44   4 4                     22 4 9999999999    4 0000  4             22           99 9      5555  444            444   999999 3           6 00  44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444     3333333   22  5        7777          555555555   3   222    1   1      1      1  22   222  1    1     1        1      1 1     1             9    99 9  1111 9 7777777777  7777777    77  44444444   1111111111111     99  1 4       8           333    2     333333333333 2  88888 3     3      
consensus                     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAACTAGAAAATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATT--G-GATATG----AT---AATAATTACAAA---ATA-----AT-TCCCTTTTCTC-A--TT---------TG-NC----CT-GTT-GNCT-----T---CGC--ATTT--------------------C----TCGTGN-TGTTTCTGTNNNGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
Reference ( family-6787 )     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAACTAGAAAATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATT--G-GATATG----AT---AATAATTACAAA---ATA-----AT-TCCCTTTTCTC-A--TT---------TG-NN----CT-GTN-GCCT-----N---CGC--ATTT--------------------C----TCGTGN-TGTTNNTGTTNCGTG-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                    TATTGATTTCCACTTAATATACAGTGTAGTT--TAAAGGCACAGGGTCTAAGAT--TTT--G-ATGAA---ATTT-TG--CA-TGTGCTAA--AAAGGG--GACAA--TCT-C-GAAGATTATGAGTAGAA--------------------------------ATTCAGAATGTGT--ACAAATACACT--G-GATGCG----AT---GATAAATACAAA---GT
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagAAT-TGT-TTTATG-GAGGGC-TA--AAA-CATG-GAAA-TGATC-TTAATTTC-AA--CATT-TGCAG-CTGTAGATAACTC-ATTA--T-TA----A-TAAAAAAAAAAAC-------AACAACAA--------CTT--------T----TTCTTGCA----TACATGT--AATATTGTGAA--ATCA-TTTAT-AGATACATG--TAAA--T--GATAGAC-CCTtctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaaattgttttatggagggctaaaacatggaaatgatcttaatttcaacatttgcagctgtagataactcattattaataaaaaaaaaaacaacaacaactttttcttgcatacatgtaatattgtgaaatcatttatagatacatgtaaatgatagaccct
gi|10                         : gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagtattgatttccacttaatatacagtgtagtttaaaggcacagggtctaagattttgatgaaattttgcatgtgctaaaaaggggacaatctcgaagattatgagtagaaattcagaatgtgtacaaatacactggatgcgatgataaatacaaagttctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaTGATATG---------T--TAAAGGTATAGAAT-TACGAT--TTT--G-ATAAA----TTT-TG--CA-TCTACCAA--ATAGGT--GGCAA--AAT-C-AAAGATTATAACCAGAAAA-A--A-C----------ATAA-G----TT-CTTC--AATGGTC--ACACACTCA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 attacgaaaaagtcatgaaatgcggaactatgttgaaaacTC---TATTTATTGT-------C-CTA-CAG--ACAAT-AAT-TCTATT-TAGGAC-TA--AAA-CATC-AAAA-TGATT-TTGATCTC-ATAGCG-C-TACAG-C-----------C-ATAA--T-TA----G-T----------AC-------TATA--TA--------TTTCG------T----T-----------TTCTTGCAAAATATTGTAA---GTCA-TTTTTGAC------A--TAAA--ATCG-TAGAA-ACTATatctatttattgtcctacagacaataattctatttaggactaaaacatcaaaatgattttgatctcatagcgctacagccataattagtactatatatttcgttttcttgcaaaatattgtaagtcatttttgacataaaatcgtagaaactatgcctta
gi|11                         :                                                                                                                                                                                                                                        attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgataaattttgcatctaccaaataggtggcaaaatcaaagattataaccagaaaaaacataagttcttcaatggtcacacactcaaAAGGC--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGgcctta
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                      caagtgataaaaatttttaTT--C-C---A------AAAA-G----TT-ATTCAGAATGTTT--TCATACACATT--G-GATATG----AT---AATAATTACAAA---ATA-----AT-TCCCTTTTCTC-A--TT---------TG-NN----NN-NNN-NNNN-----N---NNN--NNNN--------------------N----NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNNNNNTATATATTGT-------C-CTC-CAG--ACATT-AAC-TTTATA-AAAGGC-TA--CAA-GGAC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAAGTC-ATAA--T-TG----A-T----------AC-------TACA--Attattcagaatgttttcatacacattggatatgataataattacaaaataattcccttttctcatttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatattgtcctccagacattaactttataaaaggctacaaggacaaaatgatttcaatttcaaagcgctgcagctttagataagtcataattgatactacaa
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 caagtgataaaaatttttaaaggcattggtaaaattttgcatgACATC--T-G-TATG----AT---AATA-TTACAAA----TA-----AT-TCC-TGTTCTC-A--AT---------TT-TA----CT-GGT-ACCT-----C---TGTTGATTT--------------------CAATCTCTT-A-TGTTTCTGT---GT--AGCCA-CA--T-CAGTAGGGTACCAGTTT---TATTTATTGT-------C-CTCACAG---CAAT-AAT-TCTATA-AAGGGC-TA--CAA-GATCAAAAA-TGATT-TCAATTTA-AAAGCG-C-TGCAG-CTTTAGATACGTCAATAA--T-TG----A-T----------AC-------TAC---AA--------TTT-G------T----TTTTTGGAGTTTTTTTTGT-AAGTATTGT
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                        aa--ATT--G-GTAAA---ATTTGTT--C--TTTTCCAA--ATAGGTTGGATGA--ATT-T-AAAGA-CATA--TAGAAAATT--AAC---A------AAAA------CT-ATTC-GAATGTTT--A-AAACACATT--G-GATATG----AA---AATAATTATAAA---ATA-----TT-TCCCTTTCCTC-A--TT---------TG-AA----CTGGTC-GTCTGTGACT---CGC--ATTT--------------------C----TTGTGG-TGTGTGTGT-------AGCCACCATTT-CAGCGGAGTAtttg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGACATAGTGTCTAAGAT--ATT--G-GTAGA---ATTT-GG---A-TATTCCAA--AAAGGC--TGCGA--AAT-T-AAAGATCATCATTAGAAAATT--A-TTAAA------AGAA-G----TT-ATTCAGAATGTTT--ACAAATACATT--G-GATA
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tcatactaatcaataaatgtagtatgtaatgaagcagtaacatattgaaacagtaacattgtaaagATTGT-------C-CTA-TAATTATAAT-ATT-TTTTTACAATGAT-CATCCAA-TTTT-CAAA-TTATT-TTGATTTC-ACAGTG-C-TACAG-CTATAGATAAATC-GTAA--T-TA----A-T----------ACTACCGGGTACA--TA--------TTT-G------T----T-----------TTCTTGCAAAATATTGTAAA--GTCA-ATTTTGAC------A--TAAATTC--G-TAGAC-ACTAT
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                        cTTCCAATAAAGGGT--GGCGGGGAAT-T-AAATACC-TAACTAGAAA-TT--A-C---A------AAAA-G----GT-ATTCAGAAAGTTTTAACAAACACATT--GTGGTATA---------GATAATTACAA------A-----GT-TGCCTTTTCgcct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                             tagtgcatttgtaaatTT--G-GTAAA---GCTT-TGTGCA-TGTTTACA--AAAGGT--GGCG---AAT-T-AAAGATC-TAACTAGAAATTT--A-C---T------AAAA-GAGCTCT-ATTCAGAAT-TTT--ATAAACac
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gatggAGGTAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------G----TTTTTGGAGTTCCTTTTTCAAAATATTGTGAT--GTCA-TTTTT---------------------GATAGAT-ACTAT
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ----------AC-------TACA--TA--------TTC-G------T----TTT-----------CTTGCAAAATATTGT-ATTAGTCA--TTTTGAG------ATTTAAA--A--AAgcctt
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGGCATAGTGTCTAAGAT--ATC--G-GTAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT--GATGA--AAT-T-AAAGATCATAACTAGAAAATT--A-C---A------AAAA-G----TTAATTCAGAATGTTG--ACAAACACATT--G-GATATG----ATTAAAATAATTACAAA---ATA-----AT-TCCCTTTTCTC-A--TT---------TGNNN----NN-NNN-NNNN-----N---NNN--NNNN--------------------N----NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--ACATTAAAT-TTTTTA-AAGGGC-TA--CAA-AATC-AAAA-TGATT-TCAATTTC-AAAGCA-C-TGCAG-CTTCAGATAACTC-ATAAATT-TG----T-T--------------------------G--------TTT-T------T----TTTTT--AGTTCTTCTTGTAAAATATTGTGAC--ATAATTTTTTAAG------G--TAAA--A--GATAGAC-ACTGTaacccaacaaaaccctagatactatgctttta
gi|20                         :                                                                                                                                                                                                                                                                                                                                                     tatttcttttatatccccaaatttacaaactaacttaagactaactaatctattccTT--G-ACAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT---GCTA--AATAT-AAAGAT-----CTAGAAAATC--A-C---ACG----AAAA-G----CT-CTTCAG-TTACTT--AC-AACACAgtct
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                   -T-AAAGATCATAACTAGAAAATCAAA-A---A------AAAA-G----TT-ATTCAGAATGTGT--ACAAA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGGAGTTCTTCTTGCAAAATATTGTGAT--GTC
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAGTTCTTTTAGCAAAATATAGTGAT--GTCA-TT------------------------GATGGAC-ACTATAtatgatagccactatgtct
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAATTAccttta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                 TTATTAT----------TCTTAACGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATGT-TG--CA-TGTTCCAA--AAAG-T--GGCAA--AAT-T-AAAGATCATAACTAGAAAATT--A-C---AGATATTAACA-G----TT-ATTCAGAATGTTT--ACAAACACATT--G-GATAAG----AT---AATAAATACAAA---AAA-----AAATCCCTTTTTTC-A--TT---------TA-AC----TG-GTA-TCCT-----A---TTG--ACTT--------------------CGAA-TCGTGTATGTTTGTGT---GT--AGCCATCA--ATCAGCTGGGTACCAGTTT---TATATGTTGTTATATTTC-TTC-CAA--ACAAT-AAA-TTCAGA-AAGGGC-TA--CAA-GGTA-AAAA-TGATT-TCAATTCC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------GTT-G-----------TTTTTGGAGTGCTTCTTGCAAAACATTGTGAC--GTCA-TTACTGAG------G--TAAA--A--GATAAAC-AC
gi|4                          :                                                                                                                                                                                                                                                                                                                          tttctatttttcattgcgttttagtaTATTGATTTC---TTCATAT----------T--TAAAGAC-TGGTGTCTAAGAT--ATT--G-C---A---ATTT-TG--CA-TGTTCCAA--AATGGT--GGCGA--AAT-T-AAAGATCATAACTATAAAATT--G-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATT--G-GATATG----AT---AATAATTACAAA---ATA-----AT-TCCCTTTTTTN-N--NN---------NN-NN----NN-NNN-NNNN-----N---NNN--NNNN--------------------N----NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTG-CCG--ACAAT-AAT-TCTATA-AAGGGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTTTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAGA--A--GATAAAC-GCTATA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                            tctttattatacaacatttGTGTCTAAGGTTTATTTCGCGTAAACAGATTT-TG--CAATGTTCCAA--AATGTT--GGCGA--A---T-AA-GATCAT--------AATC--C-T---A------GAAA-G-------ATT---AATG-------AAATTTATTCAG-AATGT---------------TTACAAACACATATCTCGAT-TCCCTTT-CTCTA--TTTATACTGGCTA-CC----CT-GTTCGACT-----TTAGCGC--ATCTTCTTTATGTTGGTGTAGCACC----TCACGG-TGTTGCTATTTGATGCAATTAACA--A-AAGTAGG-TACCAGTTTCC-TATATATTGT-------GGCAC-CAGG-ACAAT-AATATTTATT-AAGGGCCTA--CAAAGGTA-CAAA-TGATTCTTAATTTCCAAAGCG-AATGCAG-CTTATGATACCTA-ATAA--TATGGGATA-T----------AC-------TACA--AA--------TTT-T------TTTTATTTTTTGAG-TCTT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                         GACATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-CG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATGACTAGAAAATT--A-C---A------GAAA-G----TT-ATTCAGAATCTAT--ATAAACACATT--G-GATATGATCAAT---AATAATTACAAA---ATA-----AT-TCCCTTTTTTC-AATTT---------NN-NN----NN-NNN-NNNN-----N---NNN--NNNN--------------------N----NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT--------------------------T-TCTATA-AAGGGC-TA--CAC-GATC-AAAA-TAATT-TCAATTTA-AAAG-------------TTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AATCTTTTTTTTT-T------T----TTTTTTGAGTTCTTTTTGTAAAATATTGTGAT--GTCA-TTTTT------------T---------ATAGAC-ACTATA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                               --G-GTAAC---ATTT-TG--CA-TGTTCCGA--AAACGT--GGTGA--GAT-TGAAAAATCATAACTAGAAAATT--A-C---A------AAAAAG----TC-ATTCAGAATGTTG--ACATACACTTT--G-GAGACG----AC---AATGATTACCAA---ATA------T-TTTTTTTTTTC-A--TT---------TG-ACGTACCT-GTT-GACT-----T---CGC--ATTG--------------------C----TTGTGT-TTGTGCTGTAACGTC-AGCCAGAG--G-CGGATGGGTACCAGTTT---TATATAT--------------C-CA-------T---T-TTTTTA-AAGAGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-T-TGCAG-CTTTAGATAACTC-ATAA--T-TA----A-T----------AC-------TATA--AA--------TTT-GTAGT--T----TTTTTTTTGTTCTTCTTGCAAATTATTGTGAT--G--ATTTTTTTAG------G--T-AA--A--GATAGAC-ACCAT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                      AA---ATTT-TT--CT-TG----AA--AGACAT--AGTG-----T-C-AAAGAT-ATAATTA---AATA--A-C---A----------------TT-ATTCAGAATGTTT--TCAAACAAATT--G-GATATG----AT---AATAATTACAAA---ATA-----------------T-----TT---------NN-NN----NN-NNN-NNNN-----N---NNN--NNNN--------------------N----NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--GCAAT-AAT-TTTATA-AAGGGC-TA--CAA-G---------------TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-C----------AC-------TACA--AA--------TTT-GTTGGGTT----TTTTTTTAGTTCTTTTTGCAAAATATTGTGAT--TTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                     aacccaagagtaaacagT--GGCGA--AAT-T-AAAGATCATAACTAGAAAATT--A-C---A------AAAA-G----TT-ATTCAGAATGATT--TCAAACACATT--G-GATATG----AT---AATAATTACAAA---ATA-----AT-CCCCTTTTCTC-A--TT---------TA-TN----NN-NNN-NNNN-----N---NNN--NNNN--------------------N----NNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNT-------ATTTTGT-------C-TTC-CAG--ACAAT-AAT-TTTATA-AGGG---TA--CAA-GATC-AAAAATGATT-TCAATTTC-AAAGCG-C-TGCAGGCTTTTGATAACTT-ATAA--T-TG----AAT----------AC-------TACA--AATTT-----TTT-T------T----TTTTTGGAGTT-TGTTTGC--AATATTGTGAT--GATA-TTTTTGAG------G--TAAA--A--G-TAGACAACTATgcct

Unaligned ( gi|24 ): ACATTCATTGTTTATTTCCAAAATCGATTTAACTATGTCTTTAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              222       3333333333333                                                                                                              1111111111                                                                                             8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888     1111111                1111          111111111                                                                                                                1111111111                 11111111   2222222222222                                            111111111111                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              000  0    6666666666666                     55   44 3     555    2  33  2        33      33     33   2 2           33       2   33 2 2222222222    2 5555  2             33            2      6666  555               2 3           3 88    6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666     0000000   22  0        2222          222222222   3   888    3   3      3      3  44   333  3    3     3        3      3 3     3             2    33 2  6666 2 1111111111  8888888    33  55555555   0000000000000     55  0 0       0           444    6     555555555555 2  88888 2     3      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              ...  .    .............                     ..   .. .     ...    .  ..  .        ..      ..     ..   . .           ..       .   .. . ..........    . ....  .             ..            .      ....  ...               . .           . ..    ...........................................................................................     .......   ..  .        ....          .........   .   ...    .   .      .      .  ..   ...  .    .     .        .      . .     .             .    .. .  .... . ..........  .......    ..  ........   .............     ..  . .       .           ...    .     ............ .  ..... .     .      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              555  8    0000000000000                     55   22 1     000    9  99  9        44      44     44   4 4           22       5   22 4 5555555555    4 0000  4             22            9      5555  444               6 3           6 66    2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222     3333333   22  5        7777          555555555   3   222    1   1      1      1  22   222  1    1     1        1      1 1     1             9    99 9  1111 9 7777777777  7777777    77  44444444   1111111111111     99  1 4       8           333    2     333333333333 2  88888 3     3      
consensus                     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTC-A--TTTG-A---------C--------CT-GTT-GACT-----T---CGCATCT--------------------CTCGTGN-TGTTTCTGTNNNGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
Reference ( family-6787 )     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTC-A--TTTG-N---------C--------CT-GTT-GNCT-----T---CGCATTT--------------------CTCGTGN-TGTTTCTGTNNNGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                    TATTGATTTCCACTTAATATACAGTGTAGTT--TAAAGGCACAGGGTCTAAGAT--TTT--G-ATGAA---ATTT-TG--CA-TGTGCTAA--AAAGGG--GACAA--TCT-C-GAAGATTATGA--GTAGAA---------------------------------ATTCAGAATGTGT--ACAAATACACTG-GATGCG----AT---GATAAATACAAAGT
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagAAT-TGT-TTTATG-GAGGGC-TA--AAA-CATG-GAAA-TGATC-TTAATTTC-AA--CATT-TGCAG-CTGTAGATAACTC-ATTA--T-TA----A-TAAAAAAAAAAAC-------AACAACAA--------CTT--------T----TTCTTGCA----TACATGT--AATATTGTGAA--ATCA-TTTAT-AGATACATG--TAAA--T--GATAGAC-CCTtctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaaattgttttatggagggctaaaacatggaaatgatcttaatttcaacatttgcagctgtagataactcattattaataaaaaaaaaaacaacaacaactttttcttgcatacatgtaatattgtgaaatcatttatagatacatgtaaatgatagaccct
gi|10                         : gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagtattgatttccacttaatatacagtgtagtttaaaggcacagggtctaagattttgatgaaattttgcatgtgctaaaaaggggacaatctcgaagattatgagtagaaattcagaatgtgtacaaatacactggatgcgatgataaatacaaagttctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaTGATATG---------T--TAAAGGTATAGAAT-TACGAT--TTT--G-ATAAA----TTT-TG--CA-TCTACCAA--ATAGGT--GGCAA--AAT-C-AAAGATTATAA--CCAGAAA-A-A--A-C----------ATAA-G----TT-CTTC--AATGGTC--ACACACTCA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        attacgaaaaagtcatgaaatgcggaactatgttgaaaacTC---TATTTATTGT-------C-CTA-CAG--ACAAT-AAT-TCTATT-TAGGAC-TA--AAA-CATC-AAAA-TGATT-TTGATCTC-ATAGCG-C-TACAG-C-----------C-ATAA--T-TA----G-T----------AC-------TATA--TA--------TTTCG------T----T-----------TTCTTGCAAAATATTGTAA---GTCA-TTTTTGAC------A--TAAA--ATCG-TAGAA-ACTATatctatttattgtcctacagacaataattctatttaggactaaaacatcaaaatgattttgatctcatagcgctacagccataattagtactatatatttcgttttcttgcaaaatattgtaagtcatttttgacataaaatcgtagaaactatgcctta
gi|11                         :                                                                                                                                                                                                                                        attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgataaattttgcatctaccaaataggtggcaaaatcaaagattataaccagaaaaaacataagttcttcaatggtcacacactcaaAAGGC--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGgcctta
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                         caagtgataaaaatttttaTT--C-C---A------AAAA-G----TT-ATTCAGAATGTTT--TCATACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTC-A--TTTG-N---------N--------NN-NNN-NNNN-----N---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNNNNNTATATATTGT-------C-CTC-CAG--ACATT-AAC-TTTATA-AAAGGC-TA--CAA-GGAC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAAGTC-ATAA--T-TG----A-T----------AC-------TACA--Attattcagaatgttttcatacacattggatatgataataattacaaaataattcccttttctcatttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatattgtcctccagacattaactttataaaaggctacaaggacaaaatgatttcaatttcaaagcgctgcagctttagataagtcataattgatactacaa
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    caagtgataaaaatttttaaaggcattggtaaaattttgcatgACATCT-G-TATG----AT---AATA-TTACAAA-TAAT-TCC-TGTTCTC-AA-TTTT-A---------CTGGTACCTCT-GTT-GATT-----T---CA-ATCT--------------------CTT---A-TGTTTCTGT---GT--AGCCA-CA--T-CAGTAGGGTACCAGTTT---TATTTATTGT-------C-CTCACAG---CAAT-AAT-TCTATA-AAGGGC-TA--CAA-GATCAAAAA-TGATT-TCAATTTA-AAAGCG-C-TGCAG-CTTTAGATACGTCAATAA--T-TG----A-T----------AC-------TAC---AA--------TTT-G------T----TTTTTGGAGTTTTTTTTGT-AAGTATTGT
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                        aa--ATT--G-GTAAA---ATTTGTT--C--TTTTCCAA--ATAGGTTGGATGA--ATT-T-AAAGA-CATA----TAGAAA-ATT--AAC---A------AAAA------CT-ATTC-GAATGTTT--A-AAACACATTG-GATATG----AA---AATAATTATAAAATATT-TCCCTTTCCTC-A--TTTG-A---------A--------CTGGTC-GTCTGTGACT---CGCATTT--------------------CTTGTGG-TGTGTGTGT-------AGCCACCATTT-CAGCGGAGTAtttg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGACATAGTGTCTAAGAT--ATT--G-GTAGA---ATTT-GG---A-TATTCCAA--AAAGGC--TGCGA--AAT-T-AAAGATCATCA--TTAGAAA-ATT--A-TTAAA------AGAA-G----TT-ATTCAGAATGTTT--ACAAATACATTG-GATA
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tcatactaatcaataaatgtagtatgtaatgaagcagtaacatattgaaacagtaacattgtaaagATTGT-------C-CTA-TAATTATAAT-ATT-TTTTTACAATGAT-CATCCAA-TTTT-CAAA-TTATT-TTGATTTC-ACAGTG-C-TACAG-CTATAGATAAATC-GTAA--T-TA----A-T----------ACTACCGGGTACA--TA--------TTT-G------T----T-----------TTCTTGCAAAATATTGTAAA--GTCA-ATTTTGAC------A--TAAATTC--G-TAGAC-ACTAT
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                        cTTCCAATAAAGGGT--GGCGGGGAAT-T-AAATACC-TAA--CTAGAAA--TT--A-C---A------AAAA-G----GT-ATTCAGAAAGTTTTAACAAACACATTGTGGTATA---------GATAATTACAA---AGT-TGCCTTTTCgcct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                             tagtgcatttgtaaatTT--G-GTAAA---GCTT-TGTGCA-TGTTTACA--AAAGGT--GGCG---AAT-T-AAAGATC-TAA--CTAGAAA-TTT--A-C---T------AAAA-GAGCTCT-ATTCAGAAT-TTT--ATAAACac
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gatggAGGTAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------G----TTTTTGGAGTTCCTTTTTCAAAATATTGTGAT--GTCA-TTTTT---------------------GATAGAT-ACTAT
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ----------AC-------TACA--TA--------TTC-G------T----TTT-----------CTTGCAAAATATTGT-ATTAGTCA--TTTTGAG------ATTTAAA--A--AAgcctt
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGGCATAGTGTCTAAGAT--ATC--G-GTAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT--GATGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TTAATTCAGAATGTTG--ACAAACACATTG-GATATG----ATTAAAATAATTACAAAATAAT-TCCCTTTTCTC-A--TTTGNN---------N--------NN-NNN-NNNN-----N---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--ACATTAAAT-TTTTTA-AAGGGC-TA--CAA-AATC-AAAA-TGATT-TCAATTTC-AAAGCA-C-TGCAG-CTTCAGATAACTC-ATAAATT-TG----T-T--------------------------G--------TTT-T------T----TTTTT--AGTTCTTCTTGTAAAATATTGTGAC--ATAATTTTTTAAG------G--TAAA--A--GATAGAC-ACTGTaacccaacaaaaccctagatactatgctttta
gi|20                         :                                                                                                                                                                                                                                                                                                                                                     tatttcttttatatccccaaatttacaaactaacttaagactaactaatctattccTT--G-ACAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT---GCTA--AATAT-AAAGAT-------CTAGAAA-ATC--A-C---ACG----AAAA-G----CT-CTTCAG-TTACTT--AC-AACACAgtct
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                   -T-AAAGATCATAA--CTAGAAA-ATCAAA-A---A------AAAA-G----TT-ATTCAGAATGTGT--ACAAA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGGAGTTCTTCTTGCAAAATATTGTGAT--GTC
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGTTCTTTTAGCAAAATATAGTGAT--GTCA-TT------------------------GATGGAC-ACTATAtatgatagccactatgtct
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--TTAccttta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                 TTATTAT----------TCTTAACGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATGT-TG--CA-TGTTCCAA--AAAG-T--GGCAA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---AGATATTAACA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATAAG----AT---AATAAATACAAAAAAAAATCCCTTTTTTC-A--TTTA-A---------CTGGTATC-CT-ATT-GACT-----T---CGAAT------------------------CGTGTATGTTTGTGT---GT--AGCCATCA--ATCAGCTGGGTACCAGTTT---TATATGTTGTTATATTTC-TTC-CAA--ACAAT-AAA-TTCAGA-AAGGGC-TA--CAA-GGTA-AAAA-TGATT-TCAATTCC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------GTT-G-----------TTTTTGGAGTGCTTCTTGCAAAACATTGTGAC--GTCA-TTACTGAG------G--TAAA--A--GATAAAC-AC
gi|4                          :                                                                                                                                                                                                                                                                                                                          tttctatttttcattgcgttttagtaTATTGATTTC---TTCATAT----------T--TAAAGAC-TGGTGTCTAAGAT--ATT--G-C---A---ATTT-TG--CA-TGTTCCAA--AATGGT--GGCGA--AAT-T-AAAGATCATAA--CTATAAA-ATT--G-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTTTN-N--NNNN-N---------N--------NN-NNN-NNNN-----N---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTG-CCG--ACAAT-AAT-TCTATA-AAGGGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTTTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAGA--A--GATAAAC-GCTATA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                            tctttattatacaacatttGTGTCTAAGGTTTATTTCGCGTAAACAGATTT-TG--CAATGTTCCAA--AATGTT--GGCGA--A---T-AA-GATCATAATCCTAGAAAGATT--A-A---T------GAAA-T----TT-ATTCAGAATGTTT--ACAAACAC------ATAT---------------CT------CGAT-TCCCTTT-CTCTA--TTTA-TACTGGCTACC--------CT-GTTCGACT-----TTAGCGCATCTTCTTTATGTTGGTGTAGCACCTCACGG-TGTTGCTATTTGATGCAATTAACA--A-AAGTAGG-TACCAGTTTCC-TATATATTGT-------GGCAC-CAGG-ACAAT-AATATTTATT-AAGGGCCTA--CAAAGGTA-CAAA-TGATTCTTAATTTCCAAAGCG-AATGCAG-CTTATGATACCTA-ATAA--TATGGGATA-T----------AC-------TACA--AA--------TTT-T------TTTTATTTTTTGAG-TCTT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                         GACATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-CG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATGA--CTAGAAA-ATT--A-C---A------GAAA-G----TT-ATTCAGAATCTAT--ATAAACACATTG-GATATGATCAAT---AATAATTACAAAATAAT-TCCCTTTTTTC-AATTTNN-N---------N--------NN-NNN-NNNN-----N---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT--------------------------T-TCTATA-AAGGGC-TA--CAC-GATC-AAAA-TAATT-TCAATTTA-AAAG-------------TTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AATCTTTTTTTTT-T------T----TTTTTTGAGTTCTTTTTGTAAAATATTGTGAT--GTCA-TTTTT------------T---------ATAGAC-ACTATA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                               --G-GTAAC---ATTT-TG--CA-TGTTCCGA--AAACGT--GGTGA--GAT-TGAAAAATCATAA--CTAGAAA-ATT--A-C---A------AAAAAG----TC-ATTCAGAATGTTG--ACATACACTTTG-GAGACG----AC---AATGATTACCAAATA-T-TTTTTTTTTTC-A--TTTG-A---------CGTAC----CT-GTT-GACT-----T---CGCATTG--------------------CTTGTGT-TTGTGCTGTAACGTC-AGCCAGAG--G-CGGATGGGTACCAGTTT---TATATAT--------------C-CA-------T---T-TTTTTA-AAGAGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-T-TGCAG-CTTTAGATAACTC-ATAA--T-TA----A-T----------AC-------TATA--AA--------TTT-GTAGT--T----TTTTTTTTGTTCTTCTTGCAAATTATTGTGAT--G--ATTTTTTTAG------G--T-AA--A--GATAGAC-ACCAT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                      AA---ATTT-TT--CT-TG----AA--AGACAT--AGTG-----T-C-AAAGAT-ATAA--TTA---A-ATA--A-C---A----------------TT-ATTCAGAATGTTT--TCAAACAAATTG-GATATG----AT---AATAATTACAAAATA------------T-----TTNN-N---------N--------NN-NNN-NNNN-----N---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--GCAAT-AAT-TTTATA-AAGGGC-TA--CAA-G---------------TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-C----------AC-------TACA--AA--------TTT-GTTGGGTT----TTTTTTTAGTTCTTTTTGCAAAATATTGTGAT--TTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                     aacccaagagtaaacagT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGATT--TCAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-CCCCTTTTCTC-A--TTTA-T---------N--------NN-NNN-NNNN-----N---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNT-------ATTTTGT-------C-TTC-CAG--ACAAT-AAT-TTTATA-AGGG---TA--CAA-GATC-AAAAATGATT-TCAATTTC-AAAGCG-C-TGCAGGCTTTTGATAACTT-ATAA--T-TG----AAT----------AC-------TACA--AATTT-----TTT-T------T----TTTTTGGAGTT-TGTTTGC--AATATTGTGAT--GATA-TTTTTGAG------G--TAAA--A--G-TAGACAACTATgcct

Unaligned ( gi|24 ): ACATTCATTGTTTATTTCCAAAATCGATTTAACTATGTCTTTAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              222       3333333333333                                                                                                              1111111111                                                                                            88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888     1111111                 111          111111111                                                                                                                1111111111                 11111111   2222222222222                                            111111111111                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              000  0    6666666666666                     55   44 3     555    2  33  2        33      33     33   2 2           33       2   33 2 2222222222    2 5555  2             33            2      6666  555               2 3           3 88   88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888     0000000   22  0         111          222222222   3   888    3   3      3      3  44   333  3    3     3        3      3 3     3             2    33 2  6666 2 1111111111  8888888    33  55555555   0000000000000     55  0 0       0           444    6     555555555555 2  88888 2     3      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              ...  .    .............                     ..   .. .     ...    .  ..  .        ..      ..     ..   . .           ..       .   .. . ..........    . ....  .             ..            .      ....  ...               . .           . ..   .........................................................................................     .......   ..  .         ...          .........   .   ...    .   .      .      .  ..   ...  .    .     .        .      . .     .             .    .. .  .... . ..........  .......    ..  ........   .............     ..  . .       .           ...    .     ............ .  ..... .     .      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                              555  8    0000000000000                     55   22 1     000    9  99  9        44      44     44   4 4           22       5   22 4 5555555555    4 0000  4             22            9      5555  444               6 3           6 66   44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444     3333333   22  5         444          555555555   3   222    1   1      1      1  22   222  1    1     1        1      1 1     1             9    99 9  1111 9 7777777777  7777777    77  44444444   1111111111111     99  1 4       8           333    2     333333333333 2  88888 3     3      
consensus                     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTC-A--TTT-----G-AC--------CT-GT------T-GACTT---CGCATCT--------------------CTTGTGN-TGTTTCTGTNNNGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
Reference ( family-6787 )     :                                                                                                                                                                                                                                                                                                                                 NNNNNNNNNNNNNNNNNNNTATTGATTTCCACTTAATAT----------T--TAAAGGCATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTC-A--TTT-----G-AC--------CT-GT------T-GACTT---CGCATCT--------------------CTCGTGN-TGTTTCTGTNNNGTN-AGCCANCA--N-CAGCNGGGTACCAGTTT---TATATATTGT-------C-CTC-CAG--ACAAT-AAT-TTTATA-AAGGGC-TA--CAA-GGTC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTCTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATA
gi|1                          :                                                                                                                                                                                                                                                                                                                                                    TATTGATTTCCACTTAATATACAGTGTAGTT--TAAAGGCACAGGGTCTAAGAT--TTT--G-ATGAA---ATTT-TG--CA-TGTGCTAA--AAAGGG--GACAA--TCT-C-GAAGATTATGA--GTAGAA---------------------------------ATTCAGAATGTGT--ACAAATACACTG-GATGCG----AT---GATAAATACAAAGT
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagAAT-TGT-TTTATG-GAGGGC-TA--AAA-CATG-GAAA-TGATC-TTAATTTC-AA--CATT-TGCAG-CTGTAGATAACTC-ATTA--T-TA----A-TAAAAAAAAAAAC-------AACAACAA--------CTT--------T----TTCTTGCA----TACATGT--AATATTGTGAA--ATCA-TTTAT-AGATACATG--TAAA--T--GATAGAC-CCTtctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaaattgttttatggagggctaaaacatggaaatgatcttaatttcaacatttgcagctgtagataactcattattaataaaaaaaaaaacaacaacaactttttcttgcatacatgtaatattgtgaaatcatttatagatacatgtaaatgatagaccct
gi|10                         : gtagatctaccttcatgtgacttatcaataaaaatggttgaagtagagaaacagtattgatttccacttaatatacagtgtagtttaaaggcacagggtctaagattttgatgaaattttgcatgtgctaaaaaggggacaatctcgaagattatgagtagaaattcagaatgtgtacaaatacactggatgcgatgataaatacaaagttctgtgtttgactatctcattcattattcattgttttgtttctgaagattgccgattacgacgctttcgataacgcagcaatgcactgatgctattttacgtcactttgcatattcatgtacgtacatatatgtaacaatgtaTGATATG---------T--TAAAGGTATAGAAT-TACGAT--TTT--G-ATAAA----TTT-TG--CA-TCTACCAA--ATAGGT--GGCAA--AAT-C-AAAGATTATAA--CCAGAAA-A-A--A-C----------ATAA-G----TT-CTTC--AATGGTC--ACACACTCA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     attacgaaaaagtcatgaaatgcggaactatgttgaaaacTC---TATTTATTGT-------C-CTA-CAG--ACAAT-AAT-TCTATT-TAGGAC-TA--AAA-CATC-AAAA-TGATT-TTGATCTC-ATAGCG-C-TACAG-C-----------C-ATAA--T-TA----G-T----------AC-------TATA--TA--------TTTCG------T----T-----------TTCTTGCAAAATATTGTAA---GTCA-TTTTTGAC------A--TAAA--ATCG-TAGAA-ACTATatctatttattgtcctacagacaataattctatttaggactaaaacatcaaaatgattttgatctcatagcgctacagccataattagtactatatatttcgttttcttgcaaaatattgtaagtcatttttgacataaaatcgtagaaactatgcctta
gi|11                         :                                                                                                                                                                                                                                        attacgaaaaagtcatgaaatgcggaactatgttgaaaactgatatgttaaaggtatagaattacgattttgataaattttgcatctaccaaataggtggcaaaatcaaagattataaccagaaaaaacataagttcttcaatggtcacacactcaaAAGGC--ATT--G-GTAAA---ATTT-TG--CA-TGTTCCAA--AAAGgcctta
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                         caagtgataaaaatttttaTT--C-C---A------AAAA-G----TT-ATTCAGAATGTTT--TCATACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTCTC-A--TTT-----G-NN--------NN-NN------N-NNNNN---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNNNNNTATATATTGT-------C-CTC-CAG--ACATT-AAC-TTTATA-AAAGGC-TA--CAA-GGAC-AAAA-TGATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAAGTC-ATAA--T-TG----A-T----------AC-------TACA--Attattcagaatgttttcatacacattggatatgataataattacaaaataattcccttttctcatttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatattgtcctccagacattaactttataaaaggctacaaggacaaaatgatttcaatttcaaagcgctgcagctttagataagtcataattgatactacaa
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    caagtgataaaaatttttaaaggcattggtaaaattttgcatgACATCT-G-TATG----AT---AATA-TTACAAA-TAAT-TCC-TGTTCTC-AA-TTT-----T-ACTGGTACCTCT-GT------T-GATTT---CA-ATCT--------------------CTT---A-TGTTTCTGT---GT--AGCCA-CA--T-CAGTAGGGTACCAGTTT---TATTTATTGT-------C-CTCACAG---CAAT-AAT-TCTATA-AAGGGC-TA--CAA-GATCAAAAA-TGATT-TCAATTTA-AAAGCG-C-TGCAG-CTTTAGATACGTCAATAA--T-TG----A-T----------AC-------TAC---AA--------TTT-G------T----TTTTTGGAGTTTTTTTTGT-AAGTATTGT
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                        aa--ATT--G-GTAAA---ATTTGTT--C--TTTTCCAA--ATAGGTTGGATGA--ATT-T-AAAGA-CATA----TAGAAA-ATT--AAC---A------AAAA------CT-ATTC-GAATGTTT--A-AAACACATTG-GATATG----AA---AATAATTATAAAATATT-TCCCTTTCCTC-A--TTT-----G-AA--------CTGGTCGTCTGT-GAC-T---CGCATTT--------------------CTTGTGG-TGTGTGTGT-------AGCCACCATTT-CAGCGGAGTAtttg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGACATAGTGTCTAAGAT--ATT--G-GTAGA---ATTT-GG---A-TATTCCAA--AAAGGC--TGCGA--AAT-T-AAAGATCATCA--TTAGAAA-ATT--A-TTAAA------AGAA-G----TT-ATTCAGAATGTTT--ACAAATACATTG-GATA
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tcatactaatcaataaatgtagtatgtaatgaagcagtaacatattgaaacagtaacattgtaaagATTGT-------C-CTA-TAATTATAAT-ATT-TTTTTACAATGAT-CATCCAA-TTTT-CAAA-TTATT-TTGATTTC-ACAGTG-C-TACAG-CTATAGATAAATC-GTAA--T-TA----A-T----------ACTACCGGGTACA--TA--------TTT-G------T----T-----------TTCTTGCAAAATATTGTAAA--GTCA-ATTTTGAC------A--TAAATTC--G-TAGAC-ACTAT
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                        cTTCCAATAAAGGGT--GGCGGGGAAT-T-AAATACC-TAA--CTAGAAA--TT--A-C---A------AAAA-G----GT-ATTCAGAAAGTTTTAACAAACACATTGTGGTATA---------GATAATTACAA---AGT-TGCCTTTTCgcct
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                             tagtgcatttgtaaatTT--G-GTAAA---GCTT-TGTGCA-TGTTTACA--AAAGGT--GGCG---AAT-T-AAAGATC-TAA--CTAGAAA-TTT--A-C---T------AAAA-GAGCTCT-ATTCAGAAT-TTT--ATAAACac
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gatggAGGTAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------G----TTTTTGGAGTTCCTTTTTCAAAATATTGTGAT--GTCA-TTTTT---------------------GATAGAT-ACTAT
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ----------AC-------TACA--TA--------TTC-G------T----TTT-----------CTTGCAAAATATTGT-ATTAGTCA--TTTTGAG------ATTTAAA--A--AAgcctt
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                        ----------T--TAAAGGCATAGTGTCTAAGAT--ATC--G-GTAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT--GATGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TTAATTCAGAATGTTG--ACAAACACATTG-GATATG----ATTAAAATAATTACAAAATAAT-TCCCTTTTCTC-A--TTT-----GNNN--------NN-NN------N-NNNNN---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--ACATTAAAT-TTTTTA-AAGGGC-TA--CAA-AATC-AAAA-TGATT-TCAATTTC-AAAGCA-C-TGCAG-CTTCAGATAACTC-ATAAATT-TG----T-T--------------------------G--------TTT-T------T----TTTTT--AGTTCTTCTTGTAAAATATTGTGAC--ATAATTTTTTAAG------G--TAAA--A--GATAGAC-ACTGTaacccaacaaaaccctagatactatgctttta
gi|20                         :                                                                                                                                                                                                                                                                                                                                                     tatttcttttatatccccaaatttacaaactaacttaagactaactaatctattccTT--G-ACAAA---ATTT-TC--CA-TGTTCCAA--AAAGGT---GCTA--AATAT-AAAGAT-------CTAGAAA-ATC--A-C---ACG----AAAA-G----CT-CTTCAG-TTACTT--AC-AACACAgtct
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                   -T-AAAGATCATAA--CTAGAAA-ATCAAA-A---A------AAAA-G----TT-ATTCAGAATGTGT--ACAAA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTGGAGTTCTTCTTGCAAAATATTGTGAT--GTC
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGTTCTTTTAGCAAAATATAGTGAT--GTCA-TT------------------------GATGGAC-ACTATAtatgatagccactatgtct
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATAA--TTAccttta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                 TTATTAT----------TCTTAACGACATAGTGTCTAAGAT--ATT--G-GTAAA---ATGT-TG--CA-TGTTCCAA--AAAG-T--GGCAA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---AGATATTAACA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATAAG----AT---AATAAATACAAAAAAAAATCCCTTTTTTC-A--TTT-----A-ACTGGTATC-CT-AT------T-GACTT---CGAATC------------------------GTGTATGTTTGTGT---GT--AGCCATCA--ATCAGCTGGGTACCAGTTT---TATATGTTGTTATATTTC-TTC-CAA--ACAAT-AAA-TTCAGA-AAGGGC-TA--CAA-GGTA-AAAA-TGATT-TCAATTCC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------GTT-G-----------TTTTTGGAGTGCTTCTTGCAAAACATTGTGAC--GTCA-TTACTGAG------G--TAAA--A--GATAAAC-AC
gi|4                          :                                                                                                                                                                                                                                                                                                                          tttctatttttcattgcgttttagtaTATTGATTTC---TTCATAT----------T--TAAAGAC-TGGTGTCTAAGAT--ATT--G-C---A---ATTT-TG--CA-TGTTCCAA--AATGGT--GGCGA--AAT-T-AAAGATCATAA--CTATAAA-ATT--G-C---A------AAAA-G----TT-ATTCAGAATGTTT--ACAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-TCCCTTTTTTN-N--NNN-----N-NN--------NN-NN------N-NNNNN---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTG-CCG--ACAAT-AAT-TCTATA-AAGGGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AA--------TTT-G------T----TTTTTGGAGTTCTTTTTGCAAAATATTGTGAT--GTCA-TTTTTGAG------G--TAGA--A--GATAAAC-GCTATA
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                            tctttattatacaacatttGTGTCTAAGGTTTATTTCGCGTAAACAGATTT-TG--CAATGTTCCAA--AATGTT--GGCGA--A---T-AA-GATCATAATCCTAGAAAGATT--A-A---T------GAAA-T----TT-ATTCAGAATGTTT--ACAAACACAT----ATCT-----------------------CGAT-TCCCTTT-CTCTA--TTTATACTG-GCTACC----CT-GT------TCGACTTTAGCGCATCTTCTTTATGTTGGTGTAGCACCTCACGG-TGTTGCTATTTGATGCAATTAACA--A-AAGTAGG-TACCAGTTTCC-TATATATTGT-------GGCAC-CAGG-ACAAT-AATATTTATT-AAGGGCCTA--CAAAGGTA-CAAA-TGATTCTTAATTTCCAAAGCG-AATGCAG-CTTATGATACCTA-ATAA--TATGGGATA-T----------AC-------TACA--AA--------TTT-T------TTTTATTTTTTGAG-TCTT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                         GACATAGTGTCTAAGAT--ATT--G-GTAAA---ATTT-CG--CA-TGTTCCAA--AAAGGT--GGCGA--AAT-T-AAAGATCATGA--CTAGAAA-ATT--A-C---A------GAAA-G----TT-ATTCAGAATCTAT--ATAAACACATTG-GATATGATCAAT---AATAATTACAAAATAAT-TCCCTTTTTTC-AATTTN-----N-NN--------NN-NN------N-NNNNN---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT--------------------------T-TCTATA-AAGGGC-TA--CAC-GATC-AAAA-TAATT-TCAATTTA-AAAG-------------TTAGATAACTC-ATAA--T-TG----A-T----------AC-------TACA--AATCTTTTTTTTT-T------T----TTTTTTGAGTTCTTTTTGTAAAATATTGTGAT--GTCA-TTTTT------------T---------ATAGAC-ACTATA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                               --G-GTAAC---ATTT-TG--CA-TGTTCCGA--AAACGT--GGTGA--GAT-TGAAAAATCATAA--CTAGAAA-ATT--A-C---A------AAAAAG----TC-ATTCAGAATGTTG--ACATACACTTTG-GAGACG----AC---AATGATTACCAAATA-T-TTTTTTTTTTC-A--TTT-----G-ACGTAC----CT-GT------T-GACTT---CGCATTG--------------------CTTGTGT-TTGTGCTGTAACGTC-AGCCAGAG--G-CGGATGGGTACCAGTTT---TATATAT--------------C-CA-------T---T-TTTTTA-AAGAGC-TA--CAA-GGTC-AAAA-TTATT-TCAATTTC-AAAGCG-T-TGCAG-CTTTAGATAACTC-ATAA--T-TA----A-T----------AC-------TATA--AA--------TTT-GTAGT--T----TTTTTTTTGTTCTTCTTGCAAATTATTGTGAT--G--ATTTTTTTAG------G--T-AA--A--GATAGAC-ACCAT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                      AA---ATTT-TT--CT-TG----AA--AGACAT--AGTG-----T-C-AAAGAT-ATAA--TTA---A-ATA--A-C---A----------------TT-ATTCAGAATGTTT--TCAAACAAATTG-GATATG----AT---AATAATTACAAAATA------------T-----TTN-----N-NN--------NN-NN------N-NNNNN---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---TATATATTGT-------C-CTC-CAG--GCAAT-AAT-TTTATA-AAGGGC-TA--CAA-G---------------TCAATTTC-AAAGCG-C-TGCAG-CTTTAGATAACTC-ATAA--T-TG----A-C----------AC-------TACA--AA--------TTT-GTTGGGTT----TTTTTTTAGTTCTTTTTGCAAAATATTGTGAT--TTCA-TTTTTGAG------G--TAAA--A--GATAGAC-ACTATgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                     aacccaagagtaaacagT--GGCGA--AAT-T-AAAGATCATAA--CTAGAAA-ATT--A-C---A------AAAA-G----TT-ATTCAGAATGATT--TCAAACACATTG-GATATG----AT---AATAATTACAAAATAAT-CCCCTTTTCTC-A--TTT-----A------------T-NN------N-NNNNN---NNNNNNN--------------------NNNNNNN-NNNNNNNNNNNNNNN-NNNNNNNN--N-NNNNNNNNNNNNNNNNN---N-TATTTTGT-------C-TTC-CAG--ACAAT-AAT-TTTATA-AGGG---TA--CAA-GATC-AAAAATGATT-TCAATTTC-AAAGCG-C-TGCAGGCTTTTGATAACTT-ATAA--T-TG----AAT----------AC-------TACA--AATTT-----TTT-T------T----TTTTTGGAGTT-TGTTTGC--AATATTGTGAT--GATA-TTTTTGAG------G--TAAA--A--G-TAGACAACTATgcct