lowQualScore : 1111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111 11111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 8888888888888888888888 44444444444444444444444 1111111 11111111 3333333333333 66666666666666666666666666666666666666666666666 333333333 2222 1111 111 444 222222 111 111 333333333333 1111 1111 11 22 11 11111 111 6666666666666666666666666666 111 111 1 11 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 77777 66666666666 1 22222 2222222 77777777777777777777777777777777 4444 11 2222222222222222222222222222222222222222222222222222 222222222 333333333333333333 44444444444444444444444444444444 3333333 1 222222 22222 111 11 111 7777777 11 1 1 1111 22222222 111111111 11 444444444444444444444444444444 11 222222 22222222 1 77777777777777777777777777777777777777777777777777777777777777777777777777 1111 22 11 77777777777777777777777777777777777 2222222 2222222 3333 1 111 3333333333333333333333333333333333333333333333333333333333333333333333333 1111 22222 11 1111111111 1111111 3333333333333333333 1111 2222222 1
lowQualScore : 2222222222222222222222 777 2 5 5 5 99999999999999999999999 4 2 55 3333333 2 22222222 2222222222222 8888 4 88888888888888888888888888888888888888888888888 3 000000000 4 9999 4 4 9999 777 222 0 777777 5 555 8 8 111 666666666666 6 9999 4444 11 11 2 6 5 5 5 3 777 1 44 66666 99 111 4444444444444444444444444444 777 000 8 0 8 11 0 1 8 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33 99999 3 3 55555555555 0 00000 3 3333333 66666666666666666666666666666666 4444 2 33 7777777777777777777777777777777777777777777777777777 8 666666666 5 99 777777777777777777 8 44444444444444444444444444444444 66 0 5555555 5 3 2 000000 00000 2 777 33 777 5555555 0 11 1 5 3 5 0 6 3 888 0000 00000000 55 999999999 6 55 777777777777777777777777777777 99 6 5 5 0 2 777777 3 00000000 4 0 0 0 3 00000000000000000000000000000000000000000000000000000000000000000000000000 1111 22 1 6 55 0 22222222222222222222222222222222222 8 6666666 6666666 3 1 4444 0 9 1 0 6 6 999 3333333333333333333333333333333333333333333333333333333333333333333333333 66 22 0 7777 0 6 1 00000 11 0 4444444444 6666666 3 4 4 8 66 4 6 3333333333333333333 777 0000 2222222 0
lowQualScore : ...................... ... . . . . ....................... . . .. ....... . ........ ............. .... . ............................................... . ......... . .... . . .... ... ... . ...... . ... . . ... ............ . .... .... .. .. . . . . . . ... . .. ..... .. ... ............................ ... ... . . . .. . . . .............................................................................................................. .. ..... . . ........... . ..... . ....... ................................ .... . .. .................................................... . ......... . .. .................. . ................................ .. . ....... . . . ...... ..... . ... .. ... ....... . .. . . . . . . . ... .... ........ .. ......... . .. .............................. .. . . . . . ...... . ........ . . . . . .......................................................................... .... .. . . .. . ................................... . ....... ....... . . .... . . . . . . ... ......................................................................... .. .. . .... . . . ..... .. . .......... ....... . . . . .. . . ................... ... .... ....... .
lowQualScore : 6666666666666666666666 555 0 0 7 7 11111111111111111111111 4 0 44 0000000 3 88888888 0000000000000 5555 0 33333333333333333333333333333333333333333333333 9 111111111 4 0000 4 4 3333 222 000 3 444444 7 444 0 2 000 888888888888 7 8888 2222 00 44 0 0 7 7 7 0 333 9 00 77777 22 777 3333333333333333333333333333 888 888 0 8 2 00 8 8 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 88 88888 2 2 55555555555 0 88888 7 0000000 55555555555555555555555555555555 5555 2 88 4444444444444444444444444444444444444444444444444444 0 777777777 0 22 999999999999999999 2 33333333333333333333333333333333 77 7 3333333 0 2 5 888888 55555 5 555 88 555 0000000 8 00 5 0 8 0 0 0 9 888 6666 22222222 44 666666666 2 66 000000000000000000000000000000 44 0 7 6 8 2 222222 2 55555555 0 2 2 0 2 66666666666666666666666666666666666666666666666666666666666666666666666666 5555 22 0 7 99 7 11111111111111111111111111111111111 0 0000000 0000000 8 8 0000 0 6 0 6 7 7 000 3333333333333333333333333333333333333333333333333333333333333333333333333 22 88 8 0000 6 0 0 00000 00 8 9999999999 2222222 6 4 4 1 11 0 9 6666666666666666666 888 6666 3333333 0
consensus : ATTTCTTCATTCATTCTAC----A--AT------AG-----CATCCTATGGGANACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TT----TT-----GA-ATT-TAGCAGAAC-------TATTTTCACA------AGTGTTACCAT-------------TTGTGCAG----TAA-CATTTGT-----TCA--------CTGA-A--TGTA-TCACA---ATA-A-TGCGTAGAATC--C-NC---TTGTATATA-TATACTGTTA-TA-CATA-N-AAAACGN-ATCGTTTG--TTTTTTTCGAGT----AT-TTGC--GTAGACAACTTCCAAA-TATCA-G-GTTTT-----A------AAAA-ATATTATACTTGCC----ATTAAATTTC-AACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAA-ACAAAATCG-TAGAAATAAAATC-AAAACTAAA-----C--TAT---ATTTTTCATTACTGTACA-------------AATAAGAAAGGGAG-ATAACTCTA-ATCTG-AAAT-TGACGTA--GGATGAGAAATCTACAAACG-TCTGCTAAAT---------GGAAT----------TGC-----GA--------ACN-----TGATCGTAAA-------------GTTAAAAATGGATAAAACATCTCGAG-A-TATTG---ATT--ATTTGAAAGTT----AATAAGCCAACGAACAN---NTTCTTGATAG-TGAGAT-ANA-AGATCNTTTCTCTGAT---ACTGGTG-A-----------TGT--ACACGTG-------TCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------TCAA-------------AT-----------------TCT-GAAAATACTA---------TGATTGAGGACCCAAA--GCG----ATN----A------ACAACATAAGA---------------T---------------NTGCAGAACAGACGACAT--TTTAG-TCTACTAAACGAAACA--C--AAATTGGGACGTCAAAA---TAA--TTCAAGG---TAATTTCT----TTAGAATTTC--ATTCTGT-ANAAT-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AA----TAAA-AA--G-TAGTT--ATTAAAAC-AAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ANTGAGC-CTAGCCT----T------C-----AAGTGTGTCAGGCACCCATACTT--AAATATGTCTAC-------GGTC--CAATCAACCAACAAGCGACAAGCG-TTTCTTTAGCCCCAAATTCGAGTCT-GATTGAC--------AA-----TT----------ATN-----TACA-A-------GTCCTAAACTCAGTATCTTGTAGCAAACCAGAAGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-CACCATGCGTGTA---TATA-CC---GATTT-TC-GC--GTCCGCAACTGC-CGNACCATACATNTATTCGTAAATGTTC-T-TATTTCTATTTCGGTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATATAAA-TTATTT-TGCTCATCGAGAAA--TGA-ATATAAAAACCGAATCGCAAAC--T-TT--TT-----A---AT---GAAA----GC-N-----TTCGGCTT-TCATAAAGT
Reference ( gi|2 ) : ATTTCTTCATTCATTCTAC----A--AT------GC-----CATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TT----CT-----GA-ATT-TAGCAGAAC-------TATTTTCATA------AGTGTTACCAT-------------TTGTGCAG----TAA-CATTTGT-----ACA--------CT---A--TGTA-CCACA---ATA-A-TGTGTACAATC--C-AC---TTGTATATA-TATACCGTTA-TA-CATA-A-AAAACGT-TTTGTTTGGGTTTTTTTCGATC----AT-TTGC--ATAGACAACTTCCAAA-TAGCA-G-GTTTT-----A------AAAA-ATCTTGTACTTGCC----ATTAAATTTT-AACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAA-ACAAAATCA-TAGAAATAAAATC-GAAACTAAA-----C--TAT---ATT-------------CA-------------AATAAGAAAGGGAT-ATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCG-TCTGCTAAAT---------G--------------TGT-----GA--------ACG-----TGACTGTAAA-------------G--AAAA-----------ATCTCGAG-C-TAATC---ATT--ATTTGAAAGTTTTAAAATAAGTCAACGAACAA---AT-----ATAG-TGAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTG-A-----------TGT--ACGTATA-------TCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------TTAA-------------AT-----------------TCT-GAAAATACTA---------TGATTGAGGACTCAAA--GCA----ATG----A------ACAACATAAGA---------------T---------------CTGCAGGGCAGGCGGCAG--TTTAGCTCTACTAAACGAAACA--C--AAATCGGAACGTCAAAA---TAA--TTCAAGG---TAATTTCTCAAGTTAGAATTTC--ATTCTGT-ATAAT-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----AC----TAAA-AA--G-TAGTC--ATTAAAAG-AAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAGTG---GGCGGGGGAAGTGGGTCGGGCACTCACACT---AAATATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAACG-TTTCTTTAGCCCCAAATTCGAGTCT-TATTGAC--------AA-----TT----------ATT-----TACA-A-------GTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGC-TGACGG-CACCATAAATGTA---TATATCCGT-GACTTGTCCGT-GTTTTGTAAATG-GCGCACCATGCATGTATCTACAACTGTACGTATATTTCTATTTCGGTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATATAAA-TTATTT-TGCTCATCGAGAAA--TGA-ATATAAAAACCGAGTCGCAAAC--T-TT--TT-----A---AT---GAAA----GC-C-----TTCGGTTT-TCATAAAGT
gi|10 : ATTTCTTCATTTA--CTAT----A--G--------------CATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TT----TT-----GA-A-T-TAGCAGAAC-------TACTTTCACA------AGTCTTACCGTATGTGCAGTAACCTTGTGCAG----TTA-CATTTGT-----TTA--------CTAA-A--TGTA-TCACA---AAT-A-TACTTACAATC-----------GT------------GTTG-TA-TATA-ATAAAACGA-ATCGTTT-GTTTTTTTTCGAGT----AT-TTGC--ATAGACAAC
gi|20 : tATTTCTTCATTCATCCTAC----A--TTTACTAAGG-----CATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TT----CT-----GA-ATT-TAGCAGAAC-------TATTTTCTTC------AGTGTTACCAT-------------TTGTGCAG----TAA-CATT
gi|14 : attATTTCTTCATTCATTTTACCTTTACTAT------AG-----CAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG----------------------------------TAGGAGAAC-------TA--CTGAT-------AGTGTTACCGT-------------ACGTGCAG----TAA-CTTTTGT-----GCA--------GTTACA--TGTA-TCACA---TTA-A-AAAATACAATC--G-TG---TTGTATATA-GA----GTTATTA-TATA-atg
gi|1 : ccattTTTCTTCATTCATTGT------------------T-----CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TT----TTTTAGGGAGATT-AAGTA-AAC-------TATGTACACA------AATGCTATAAT-------------TTCTACGGGGGATAGGCATTTAT-----TCA--------TTGA-A--TGTAATCACA---AT------T-TCCGATC--CTAC---ATGTATAGA-TAG--TGTTA-TA-CATT-A-AAA-CGTATTTGTTTCTGTCCCT----ACA----AT-TTGT---TAG-CAACTTTCAAAGTATCA-TTGCTTTGTAGAA------AAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATT-------------CATTACTGTACACGCATTAAGAAAGGG-----AGCTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAAT---------GGAAT----------TGC-----GGTGGTCTATACGAATATTGATTCTAAA-------------ATTAAAAATGGATAAAACATCTTGAGACATGTTG---ATTAAAATTGAAAGTT-----ATAAGCCAACGAACACTTTTT-----ATAGTTGAGAT---A-AAACCCTTTCTCTG-------TGATGAA-----------TGGGAACGC-TT-------TCTTCCAATGATAAAAAAGA---TGATCGAAATGAAAGGGAAA----------------GTAA-------------ATAAGTAAGAGAAGCAAAGTCTGGAAAATTCTA---------T--TTAAGGGTGCAAAATGTG----TTG----AAAAACCATAACATAAGAGCAAGTCTGAATAATT---------------TTGCCGAACAGACGACAGTTTTTTGCTCTACTA----AAACA--CCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTC-----TTAGAATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACAT--TA----AA--ACACAATTTTGATTGAAAA-A----------TGAA-AACTG-TAGGCGGATTAAAAACAATCAAATGGAATAACATACA-TTTTCA
gi|13 : TCTCTTCATTCATTCTAT----A--------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATT----TTAAG--GA-AAA-TAGC-GAAC-------TATTTTCACAAGATATAGTGTTATCAT-------------TTGTTTA-----TAG-CATTTGT-----TCT--------CTGA-A--TGTA-GCATA---TCA-A-TATGTAGAATT--C-gcgtaccctcaagtgtgtcaggtacccatactttaaaatatgtctacgttccaaccaacaagcaacaagcgtttcgttagttccaaattcgactatgcattgactaatttgtttattagatatacaagtcctaaaaacatgccagcaaaccagaaatacagcagaaactgctgttaatttctgcttgacggccaacatgcgtgtaaagattacggcgcggatctaccatccatttggaaatgtttttttctatttcgatagcgtgtagatgaatttcatggacaattgacagtttctaatttgtaattgaattataagctattgaatatataaatttattttgcacatcgagaaatttgatataaaaaaccgaatcgcaaacgttttctataaatgaaga
gi|9 : caattTTCATTTTAC----A--ATC-----ACTATAACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTTTCCT------A-ATT-TATCAGAAC-------TATTTTTACA------CTCGTTACCAA-------------TTGTGCAA----TAA-CTTGTGT-----TCA--------CT---GATTGCA-TTACG---ATA-T-TGCGTTGAATC--A-AC---TTGTATATA-TA--CTGTTA-TA-CATACATAAAACGC-ACTGTTTG---TTTCTTCGAGT----AT-TTGC--TTAGACAACTTCCAAA-TAACA-G-ATTTT-----A------GAGA-AT-----------C----ATTAAGTTTC-AACTGttatgt
gi|16 : TTC-AC----T--AT------AG-----CATCCTATGGGAGACTTTCTTT-T
gi|36 : -----CATCTTATGGGAGACTGTCTTT-TAT-TCATgaattagcagaactattttcacaagtgttatcataggtgcagtgcagtaacatttgttcactgaatgcatcacaatatattgtttagaatctccttgtatatatattgttatacatataaaa
gi|21 : tatagTGAA-TGTAAT----------GT-----------GA-GTTATAGCAGAACAGCGAACTATTTTTTCA------AGTGTTACCTT-------------TTGTGCAG----TAA-CAATTGT-----TCG--------CT---ATGTGTA-TCACACC-AT--A-TG-GTAGAATC--C-TCATATAATATACA-TGTACTATTA-TA-Ccagaactatttatacaagtgttatcatttgtgca
gi|16 : ----------TT----TT-----GA-ATT--AGCAGAAC-------TATTTTCACA------AGTGTTATCATAGGTG--------CAGTGCAG----TAA-CATTTGT-----TCA--------CTGA-A--TGCA-TCACA---ATATATTGTTTAGAATC--T-CC---TTGTATATA-TAT--TGTTA-TA-CATA-T-AAAA
gi|36 : ttcactatagcatcctatgggagactttc-ATT-CATCAGAAC-------TATTTATACA------AGTGTTATCAT-------------TTGTGCA
gi|27 : tatagcatcttatgggagactgtcttttAGAAC-------TA----CATG------TATGTTATCAT-------------TTGTGCAG----TAA-CATTTGT-----TTA--------TTGA-A--TGTA-C-----------A-TGT-TAGAATC--C-TC---TTG--TATA-TATACTGTTA-CA-CATT-T-AAAAC
gi|22 : ggagttgaaGTGCAG----TAA-CCTTTGTGAGTTACAATTTGTTTCT---AAATGTA-TCACATTTACA-A------ACAATCGCT-AG---TTGTATATAATATATAGCTA-TAACATT-A-AATACAA-ATCGTTTG--TTTTTTTCGAGT----ATATTGT--GTAct
gi|24 : tataTATACA-TGTACTGTTA-TA-CATA-T-AAAATGT-ATTATTTG----TTTTTCGAGT----AT-TTGC--AAAGACAACTTCCAAA-TGTCATG-TTTTT-----A------AAAA-ATATTATACTTGAC----ATTAAATTTC-AACTGAA
gi|31 : aACGT-TTCATTTC--TTTTTTTCCCTCGTGTAT-TTGCGTATAGACGACGTCCAAA-TATCA-G-GTTTT-----AGATAAGAAAA-AAATTATACTTGCT----ATTCAA
gi|15 : atGTATTTTTCAAGT----AT-TTGC--TTATACAACTTCCAAA-TGGCA-G-GTTTT-----AG-----AAAA-ATATTCTACTTGCC----ATTAAATTTC-AACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-A-TTAAAATAAAA
gi|3 : ttggacata------AAAA-ATATTATACTTGCC----ATTCAATGTC-AACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAA-ACAAAATCG-TAGAAATAAAATC-AAAACCAAA-----C--TAT---ATTTTTCATTACTGTACA-------------AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCG-TCTGCCAAAT---------GAAATTACCGGGTTATGC-----GA--------ACT-----TGACTGTAAAATTAGAAATGGAAG--GAAA-----------ATTTCGAG-----ATCTTGATT--ATTTGAAGGTT----AATA-GTCAATGAAGAA---AT-----ATAG-TGGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTG-A-----------CGT--ATACGTG-------TCTTACAATAATAAAAAAAAG-CTGCTCGAA--GAAATGGAGA----------------TCAA-------------AT-----------------TCT-GAGAATACTACATGTATCATGATTGAG-ACCCAAA--GCG----ATA----A------A-AACATAAGA-------------------------------ATAGAAAACAGAT---AT--TTCAG----GATAAACGAAACAAAC--AAAT-GAGACGTCAAAA---TAA--TTCAAGG---TAAATTCT-----TAGAATTTC--AGTCTGT-ATAAT-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAAT-----ACTCCATAAA-AT--G-TATTT--TATAAAAC-AAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAGaatctatgttt
gi|17 : gGACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAA-A-----------GAAATAAAATC-AAAACTAAA-----C--TAT---ATTTTTCATTATTGTACA-------------AATAGGAAAGGGAG-ACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCG-TCT
gi|39 : ctATCAAGTTGTTAC-TTT-GTTAAAAGCTAA-ACAAAGTCG-TAGAAAT
gi|30 : AGTTTTTAT-CTT-GTTGGAAGCTAA-ACAAAACCA-TAGAAATAAAATC-AAAACTAAACCTGTC--TAT---ATTTTTCATTATTGTACA-------------AACAAGAAAGGGAG-ATAA
gi|18 : TTTTTGTTCTT-GCTAAAAGTTAA-ATAAAACCG-TAGAGATAAAATC-AGAACTAAA-----C--TAT---ATCGATCAATACTATACA-------------AATAAGAATGGGAT-ATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATG-TCTGC
gi|12 : gaA-----C--TGT---A---------------CA-------------CATAAGAAAGGGAG-GTAATTCTA-AATTG-A-------TGTA--GGATGAGAAATCTACAAACG-TCTGCTAAATGGAATTGCCG--------------TGTTATACGA--------ATA-----TGATCGTAAA-------------ATTAAAAATGGATAAAACATCTTGAG-A-CATTG---ATT--ATTTGAAAGTT----AATAAGCCAACGAACAC---TTTTTTGATAG-TGAGAT-AAA-
gi|6 : tattgatcattAG-------------G--AAAA-----------ATTTCAAG-A-TATAG---ATT--ATTTGAAAGTT---AGA-AAGTCAACGAACAA---ATTCTTGATAG-TGAGATTATATAGATCTTTTCTCTGATCATACTGGTG-ACATACATATTCTGT--ACATATACACGTCATCTACCAATGATAGAAAAATA--TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAATCAA-------------AT-----------------TCT-GAAAATACTA---------TGACTGAGGGTCCAAA--GTGTTTGATATCATA------ACAAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACAT--TTTAGGTCTACTAAACGAAACA--C--AAAATGGGACGTCAAAA---TAA--TTCAAGG---TAATGTC-----TTAGAATTTC--ATTCTGT-AATGT-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|25 : attaaaaacggCTCCGAC---ATTGGTG-A-----------TGT--ATACGTG-------TCTTCCAATAATAAAAAAAGA-CTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTT-GAAAATACTA---------TGATTGAGGACTCAAA--GCA----A
gi|4 : TGGAGG----------------T--A-------------GT-----------------TCT-GAAAATGCTA---------TGATTGAGGACCAAAA--GCA----ATT----A------AAAACATAAGA---------------
gi|38 : ---------TGATTGAGGACCCAAA--GCA----ATT----A------ACAACATACGA---------------aaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGG---TAATTT--------AGAAT----------------AT-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATT--AAA-------------AAA-AA--A-TA--------AAAAC-AAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCTGAATT------------AAGTGTGTCGGGCACCTACACT---AAAaaagaaatcag
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagTTTCTTAAG---GAATTTC--ATTCTGT-GTGAT-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTAC-TT-AA----AC--ACATAATTTTGATTAAAAATA----AA----TAAATAA--A-AAGTT--ATTAAAAC-TAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GT-----GTGTCAGGCCCGG---GT--GTC-GGCACCCATACT---AAATATGTGTA-----CGGG-----CAATCAA----CAAGCGACAAGCG-TTTCTTTAGCCCCAAATTCGAGTCT-AATTCAC--------AATT---TT----------GTT-----TATACATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-CACCATGCGTGTAAATTACA-CCGCAGATCT-TCAGC-TATTCGTAAATG-------------TGTAT------------------TTCTATTTCGGCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAcccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|19 : TTCTGT-ATAAT-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAA----TAAA-AA--G-TAGTT--ATCAAAAC-TAGCGAATGGAATAAAGTACA-ATTT
gi|34 : CTGT-ATAAT-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|23 : CTGT-AAAGT-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCGTT--AAGTACAG----AA--ACACA---------CAAAATA----GA----TAAA-AT--G-TCTTT--ATTAAAAC-AAACGAATGGAATAAGGTACATATTa
gi|11 : TAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----AT----T--------GCTAGT---ATTCAAAC-AAGCAAATGGAATAAGATACA-GT--------TGTTATAC-----TT-CCAGCAA---AAC--AATGAAC-CTAGCCT-----------C-----AAGTGTGTCAGGCATCCACATTTG-AAATCCGTCTAC--------GTTT--AACCAACAGGCGGCCAG--AATGATTTCTTTAGCTCCAAATTCGAGTCT-cc
gi|1 : AAGTGTGTCAGGTACCCATACTTTAAAATATGTCTAC-------GTTC------CAACCAACAAGCAACAAGCG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACT-------AATTTGTTT----------ATTAGATATACA-A-------GTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGGCCAACATGCGTGTA---g
gi|8 : tttcttcattcattgttcatccactatataattccacagtgaggtataacttttttagggagattaagtaaactatgtacacaaatgctataatttctacgggggataggcatttattcattgaatgtaatcacaatttccgatcctacatgtatagatagtgttatacattaaaacgtatttgtttctgtccctacaatttgttagcaactttcaaagtatcattgctttgtagaaaaaacatcatttacttgctttcaattaaattttcaactgaatgacccacactatttaatcaagattctatcttgctaaaagctaaggcaaaatcagttgaaataaaatcaaaaattaaacgttacttgattcattactgtacacgcattaagaaagggagctcaattctgtaaattgatgtaagggagagaaatctacaaacgttctgctaaatggaattgcggtggtctatacgaatattgattctaaaattaaaaatggataaaacatcttgagacatgttgattaaaattgaaagttataagccaacgaacactttttatagttgagataaaaccctttctctgtgatgaatgggaacgctttcttccaatgataaaaaagatgatcgaaatgaaagggaaagtaaataagtaagagaagcaaagtctggaaaattctatttaagggtgcaaaatgtgttgaaaaaccataacataagagcaagtctgaataattttgccgaacagacgacagttttttgctctactaaaacaccaaaattgactcaaaaacttaaatttcaaggccccaatttcttagaatttccaacgcagtaaaaatgcataccatgaattgacgagctgagataaagtttaccactaatagtgttacattaaaacacaattttgattgaaaaatgaaaactgtaggcggattaaaaacaatcaaatggaataacatacattttcagcgtaccctcAAGTGTGTCAGGTACCCATACTTT-AAATATGTCTAC--------GTC------CAACCAACAAGCAACAAGCG-TTTCGTTAGTCCCAAATTCGACTAT-GATTGAC--------AA-----TTTTGTTTATAGATA-----TACA-A-------GTCCTAAA---A----CTTGCAGCAAACCAGAAATA-CA---GCAACTGCTGTTAATTTCTGC-TGACGG---CCA-ACATGCG---TGTA------GATT----------------ACTGCGCGGATC-TACATCCATTTGGAAATGT--TTAT--TTCTATTTCGATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaagattacggcgcggatctaccatccatttggaaatgtttttttctatttcgatagcgtgtagatgaatttcatggacaattgacagtttctaatttgtaattgaattataagctattgaatatataaatttattttgcacatcgagaaatttgatataaaaaaccgaatcgcaaacgttttctataaatgaaga
gi|29 : ttaaaacaatcaaatggaataacatacattttcagcgtaccctcGTGCGTCCGGCACCCATACA---AAA-ATATCTACGA----------ACAATCAAC-AATAGACA---AGCG-TTTATTTAGCCAAATATTCGAGTCT-AATTCAC--------AA-----TT----------
gi|28 : gaattatcactTCTACGTTCACGCAACAAAGGACAAACG-TTTCTTTAGCCCCAAATTCGAATCT-GGTTGAC--------AA-----TT----------ttgtt
gi|4 : ggtacccatactttaaattatataCCCAAATTCGAGACT-GATTGACTTTTTTTGTA-----TTG---------ATA-----TACA-A-------GTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-CACCATAttgtttattaatatacagg
gi|7 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaGTTT-TATTTAT---------------TG----------ATG-----TACA-A-------GTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-CACCATGCGTGTA---TAT----------TTCTCCGCAGGTCTACAGCTGTTCGTA-CATGTTTATTTCTAT-----TTCGT-TA-----ATATAGGTTGC-----TGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATATAAA-CTATTT-TGTTCACAAAGAAA--TGA-ATATAGAAACTGAATCGCAAACTTT-TT--TT-----G---GT---GAAAATTTGCGA-----TTCGGTTTATCATcagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|37 : TGATGATTACTAC-TGACGG-CACCATGCGTATA---AATAACCttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|4 : GCACCATACAGCTATTCGTAAATGTTC----ATTTCTATTTAGGTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATA---A-T-ATATATAC-CA-CGGTACA--TGT-ATATAAAAACCGAATCGTAAAC--T-TT--TTTTT--A---AT---AAAA----GC-A-----TTCGGCTT-TCATAAAGTccggccaatcttca
gi|1 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacgTTTCTATTTCGATAGCGT-GTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATATAAATTTATTT-TGCACATCGAGAAATTTGATATA-AAAAACCGAATCGCAAAC--G-TT--TTCTATAA---AT---GAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tttcttcattcattgttcatccactatataattccacagtgaggtataacttttttagggagattaagtaaactatgtacacaaatgctataatttctacgggggataggcatttattcattgaatgtaatcacaatttccgatcctacatgtatagatagtgttatacattaaaacgtatttgtttctgtccctacaatttgttagcaactttcaaagtatcattgctttgtagaaaaaacatcatttacttgctttcaattaaattttcaactgaatgacccacactatttaatcaagattctatcttgctaaaagctaaggcaaaatcagttgaaataaaatcaaaaattaaacgttacttgattcattactgtacacgcattaagaaagggagctcaattctgtaaattgatgtaagggagagaaatctacaaacgttctgctaaatggaattgcggtggtctatacgaatattgattctaaaattaaaaatggataaaacatcttgagacatgttgattaaaattgaaagttataagccaacgaacactttttatagttgagataaaaccctttctctgtgatgaatgggaacgctttcttccaatgataaaaaagatgatcgaaatgaaagggaaagtaaataagtaagagaagcaaagtctggaaaattctatttaagggtgcaaaatgtgttgaaaaaccataacataagagcaagtctgaataattttgccgaacagacgacagttttttgctctactaaaacaccaaaattgactcaaaaacttaaatttcaaggccccaatttcttagaatttccaacgcagtaaaaatgcataccatgaattgacgagctgagataaagtttaccactaatagtgttacattaaaacacaattttgattgaaaaatgaaaactgtaggcggattaaaaacaatcaaatggaataacatacattttcagcgtaccctcaagtgtgtcaggtacccatactttaaaatatgtctacgttccaaccaacaagcaacaagcgtttcgttagttccaaattcgactatgcattgactaatttgtttattagatatacaagtcctaaaaacatgccagcaaaccagaaatacagcagaaactgctgttaatttctgcttgacggccaacatgcgtgtaaagattacggcgcggatctaccatccatttggaaatgttttGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATACAAA-TTATTT-TGCTCATCGAGAAA--TGA-ATATAAAAACCAAATCGCAAAC--T-TT-------------AT---GAAA----GC-C-----ga
gi|7 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcATTAT----AAAGA-AAT-------AAATATA-ATA-CCATTT-TGCTCA-CGAAAAA--TGA----TAAA--CCGAATCGCAAAT--T-TTCACC-----A---AA---AAAA----GT-TTGCGATTCAGTTT-CTATAtca
gi|33 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaaATTAT----AG-G--ATT-------GAATACATAAA-TCATTT-TGCTGAACGAGATA--TTA-ATATAAAAACCGAAACACAAAC--------TT-----A---AT---GAAA----GC-aaattgattatttctgctaaataattcagcacaactctcc
gi|26 : tctaatgtac-------GAATATATGAA-TTATTT-TGTTCATCGAGAAA--TGA-ATATAAAAACCGAATCGCAAAA--TGTT--TG-----A---ATGCCGAAG----GC-A-----TTC
gi|35 : gaatataaaaactgaatcgcaaacttttcagttatATTTATAAA-TTATTT-TGTTCATCGAGAAA--TAA-ATATAAAAACCGAATCGCAAAC--------TA-----A---AT---GAAA----GC-C-----
gi|32 : ttTATATATA-TTATTT-TGTTCACCGAGAAA--TGT-ATATAATAACT---TTGCAAAC--T-Tg
gi|26 : aaactgaatcgcaaaccattttgtgaaacttttctatcGA-ATATAAAAACTGAATCGCAAAC--T-TT--TC-----AGTTAT---GAAT----GC-C-----TTCGGCAT-TCAcc
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 444444444444444444444 33333333333333333333333 1111111 111111 2222222222222 111111 11111111111 111 11 1111111 22222222222 1111 11111 1111 111 2 99999999999999999999999999999999999999999 1 11 11 1111 33333 111 66666666666666666 111 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 11 111 22 111111 111 11 111 2222222 111111 111111111 1111 111111111111 222222 111 444444444444444 1111 3333 7777777777777777777 22222222 7777777777 111 4444 88888888888888888888888888888888888888 1 44444 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 55 4 0 55555555555555555555555 4 0 4 1111111 5555 2 0 000000 88888 7777 0000000000000 3 3 2 4 4 999999 77 2 55555555555 4 333 4 44 66 1 4 11 2222222 5 8 66 6 3 777 77777777777 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 0 99 6 6 44444444444444444444444444444444444444444 2 22 5 0 11 11 7777 3 0 22 33333 8 8 1 8 2 1 0 444 1 44444444444444444 1 8 99 666 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 11 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 999999999 4 22 0 9999 5 222222222222 0 0 0 0 5 777 99 000000 3 111 1 99 3 1 66 4 888888888888888 2222 5 3333 66 4444444444444444444 5 77 5 5 66666666 5555555555 1 444 111 1 2 4444 6 4 5 5 5 99999999999999999999999999999999999999 1 1 44 1 1 11111 66666 5 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . .. . . ....................... . . . ....... .... . . ...... ..... .... ............. . . . . . ...... .. . ........... . ... . .. .. . . .. ....... . . .. . . ... ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . .. . . .. .. .... . . .. ..... . . . . . . . ... . ................. . . .. ... .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . ... .. ...... . ... . .. . . .. . ............... .... . .... .. ................... . .. . . ........ .......... . ... ... . . .... . . . . . ...................................... . . .. . . ..... ..... . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 6 2 1 4 4 00 0 7 00000000000000000000000 0 9 0 8888888 2222 2 1 555555 33333 7777 0000000000000 6 6 3 0 0 000000 11 5 99999999999 0 444 0 66 99 0 0 99 6666666 0 5 99 7 3 555 33333333333 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 0 22 7 5 55555555555555555555555555555555555555555 0 88 8 0 00 00 0000 8 8 00 00000 0 0 0 0 5 0 8 000 4 00000000000000000 4 0 44 888 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 00 555 22 0 888888 0 2 000 00 000 0000000 7 22 6 4 4 9 888 4444 2 222222 4 999999999 6 99 4 4444 0 000000000000 1 5 2 8 0 666 22 333333 2 777 5 22 3 0 44 3 777777777777777 1111 7 2222 99 3333333333333333333 7 99 7 0 44444444 6666666666 0 333 333 7 2 0000 7 2 7 7 7 99999999999999999999999999999999999999 3 8 00 7 5 55555 77777 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATCCT-C---T---TGTATATA-TATACTGTTATA-CATATA--AAACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA-G-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANAAAANATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTGAGC-CTAGCCCG---T---C-----AAGT----GTGTCGGGCACCCATACTTT-AA--ATATGTCTAC-------GGTC--CAA-CAAC-CAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGAC--------AATTT--TT--TA-ATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA-TA-----GATT--TCCG-G-TCCGCAACTG--CG-ACCATNCANCTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGANACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACAATA-A-TGCGTAGAATCCN-C---T---TGTATATA-TATACTGTTATA-CATANA--AAACGNATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TATCA-G-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAAT-TGACGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGC----------GA--------ACN-----TGATCGTAAAGTTAAAAATGGATAAAACATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACANNTTCTTGATAGT-GAGAT-ANA-AGATCNTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGAACAGACGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTANAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ANTGAGC-CTAGCCT----T---C-----AAGT----GTGTCAGGCACCCATACTT--AA--ATATGTCTAC-------GGTC--CAATCAAC-CAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGAC--------AATT----------ATNTACAAGTCCTAAACTCAGTATCTTGTAGCAAACCAGAAGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTATA-TACC---GATT--TTCGCG-TCCGCAACTGC-CGNACCATACATNTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATCCTAC---A---TGTATAGA-TAG--TGTTATA-CAT-TA--AAACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCA-TTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACACTTTTT--ATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGATAAAAAAGA---TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAAA---AAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC----T---C-----AAGT----GTGTCAGGTACCCATACTTTAAA--ATATGTCTAC-------GTTC--CAA----C-CAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACT-------AATTTGTTTATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGG-CCAACATGCGTGTAAA--------GATT--ACGGCG---CGGATCT------ACCATCCATTT----GGAAATGTTT-T-T--TTCTATTTCG-----ATAGCGT-GTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATCGT-G---T---TGTATATA-----------------ATA--AAACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTT---GTTATACT---T--------CCAGCAA---AAC--AATGAAC-CTAGCC-----T---C-----AAGT----GTGTCAGGCATCCACATTTG-AA--ATCCGTCTAC--------GT------TTAAC-CAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATTCT-T---A---TGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATCGT-G---T---TGTATATA-GA-GTTATTATA-TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCA-G-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATCTC-C---T---TGTATATA-TAT--TGTTATA-CATATA--AAA
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATCCA-C---T---TGTATATA-TATACCGTTATA-CATAAA--AAACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCA-G-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAAG------------AAAA-ATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAGTGGGCGGGGGAAGT----GGGTCGGGCACTCACAC-T--AA--ATATGTCTACAACCCGGGGTCTACAATCAAC-CAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGAC--------AATT----------ATTTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATAAATGTATA-TATCCGTGACTTGTCCGTGTTTTGTAAATGG-CGCACCATGCATGTATCTACAACTGTACGTATATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATCCT-CATAT---AATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATC-G-C---TAGTTGTATATAATATATAGCTATAACATTAA--ATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATATA--AAATGTATTATTTG--TTTT--TC----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCATG-TTTTT----A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAATAAAAAAAGA-CTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATCCT-C---T---TG--TATA-TATACTGTTACA-CATTTA--AAAC
gi|28 : ggagttgaaGGTACCCATACTTTAAATTATATATCTAC-------GTTC--------ACGCAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGAC--------AATT----------ct
gi|29 : GT----GCGTCCGGCACCCATAC----AA--AAATATCTAC-------G------AA-CAAT-CAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCAC--------AATT----------ttgtttattaatatacagg
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAATAAAAAAAAG-CTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAGttgtt
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCA-G-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCAT----CAG--------AAC----------T--------------ATT-TA--------------TA--------CAAG------TGTTATCAT-----TTGTGCAcg
gi|37 : tTGATGATTACTACT-GACGG-C-ACCATGCGTATAAA-TA
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------accccggccaatcttca
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCTGAA-T---T-----AAGT----GTGTCGGGCACCTACAC-T--AA--Aaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGACTTTTTTTGTATTG---------ATATACAAGTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATACcccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaGCACCATACAGCTATTCGTAAATGTTC----ATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacgAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTAC-TT-AA----AC--ACATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGTG---T---C-----AGGCCCGGGTGTC-GGCACCCATAC-T--AA--ATATGTGTAC-------GG-------GCAAT-CAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCAC--------AATTTTGTTTATACATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAATTAC-----A------------CCGCA--------GATC-TTCAGCTATTCGTAAATGT---G-TATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : TTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGATAGAAAAATA--TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : aATTG---------ATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTATA-T------------TTC----TCCGCAG--GT-C------TACAGCTGTTCGTACATGTT----TATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gttttatttATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgAGC-GTA-CCC----T---C-----AAGT----GTGTCAGGTACCCATACTTT-AA--ATATGTCTAC-------G-TC--CAA----C-CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGAC--------AATTTTGTTTATAGATATACAAGTCCTAAA---A----CTTGCAGCAAACCAGAAATA-CA---GCAACTGCTGTTAATTTCTGCT-GACGGCC-AACATGCGTGTA----------GATT---------------ACTGCGCGGATC-TACATCCATTTGGAAATGT---T-TATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattttcTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATCAA-C---T---TGTATATA-TA--CTGTTATA-CATACATAAAACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACA-G-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 444444444444444444444 22222222222222222222222 1111111 111111 2222222222222 111111 11111111 111 111 11 1111111 33333333333 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 22222222 111 66666666666666666 111 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 222222222 1111 111111111111 1 11111 111 55555555555555555 1111 11111 555555555555555555555 666666666666666666 11111 2222 1 4444444444444444444444444444444444444 1 44444 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 2 4 77777777777777777777777 4 0 4 1111111 55 2 000000 88888 7777 0000000000000 3 3 2 4 4 777777 77 2 44444444 4 555 4 000 4 0 4 11 00 2222222 5 8 66 6 1 6 44444444444 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 55 1 11 11 7777 3 0 11111111 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 666 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 555555555 4 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 3 66 4 00000000000000000 2222 0 999 00000 888888888888888888888 77 5 5 5 000000000000000000 00000 1 1 0000 1 4 7 3 5 1 0 1111111111111111111111111111111111111 5 1 7 1 11111 66666 5 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . . . ....................... . . . ....... .. . ...... ..... .... ............. . . . . . ...... .. . ........ . ... . ... . . . .. .. ....... . . .. . . . ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . .. . .. .. .... . . ........ . . . . . . . ... . ................. . . .. ... .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ..... ..................... .. . . . .................. ..... . . .... . . . . . . . ..................................... . . . . ..... ..... . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 9 2 1 4 4 5 4 88888888888888888888888 0 9 0 8888888 00 4 555555 33333 7777 0000000000000 6 6 3 0 0 888888 11 5 99999999 0 222 0 999 4 6 0 99 22 6666666 0 5 99 7 0 7 00000000000 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 66 0 00 00 0000 8 8 00000000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 888 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 4 333333333 6 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 44444 111111111111111111111 99 7 0 7 444444444444444444 00000 7 7 8888 0 2 8 0 7 4 7 6666666666666666666666666666666666666 5 0 5 5 55555 77777 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAAA-T---ATGTCTAC-------GTTC--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGAC-AATTT-TGT---T----TAT---ATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGTAAAT------GATT--TCCG---TCCGCA------G-ACCATNCAGCTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANAAAANATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTGAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAAA-T---ATGTCTAC-------GGTC--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGAC-AATTT-T-----T----TA----ATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGTAAATA-----GATT--TCCG-G-TCCGCAACT-GCG-ACCATNCANCTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATC-CTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCATTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACA--CTTTTTATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGATAAAAAAGA---TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAAAAT---ATGTCTAC-------GTTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGT-----T----TATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGGCCAACATGCGTGTAAA-------GATT---ACG-G-CGCGGATCT-----ACCATCCA----TTTGGAAATGTTT-T-T--TTCTATTTCG-----ATAGCGT-GTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATC-GT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAAA-T---CCGTCTAC-------GTT-------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATT-CT-T---ATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATC-GT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCAG-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATC-TC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATC-CA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCAG-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAAG-------------AAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAAA-T---ATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGAC-AATT-------------------ATTTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGCT-GACGGC-ACCATAAATGTATATATCCGTGACTTGTCCGTGTTTTGTAAATGGCGCACCATGCATGTATCTACAACTGTACGTATATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATC-CT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGCT-AG--TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTTT--C----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCAT-GTTTTT---A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAATAAAAAAAGA-CTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATC-CT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAA-TTATATATCTAC-------GTTC----A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGAC-AATTT-TGTTTAT----TA----ATATACAGGct
gi|29 : GT----GCGTCCGGCACCCATAC---AAA-A---ATATCTAC-------G------AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCAC-AATTT-T-----
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAATAAAAAAAAG-CTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAGgtt
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCAG-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCATcg
gi|36 : t----------TTTT-----------ATT-CATCAGAAC-------TATT--TATACAAG------TGTTATCAT-----TTGTGCAcagaactatttatacaagtgttatcatttgtgca
gi|37 : tatagcatcttatgggagactgtcTGATGATTACTACT-GACGGC-ACCATGCGTATAAATA-----
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------accccggccaatcttca
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC-TTTTT-T-----TGTATTG----ATATACAAGTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAAC------TGC----AATTGCTGTT-AA----------------------------TT--TCTG----CTG--ACG-GC--ACCATACAGCTATTCGTAAATGTTC----ATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACTTA-AA----CA---CATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AAA-T---ATGTGTAC-------GG------G-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCAC-AATTT-TGT---T----TATAC-ATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGTAAAT------------TACA----CCGCA------G-ATC-TTCAGCTATTCGTAAATGTG----TATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGATAGAAAAATA--TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : ATTT-A-----T----TG----ATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGT--AT-------ATT--TC-----TCCGCA------G-GTC-TACAGCTGTTCGTACATGT---T-TATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gttttATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAAA-T---ATGTCTAC-------G-TC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGAC-AATTT-TGT---T----TATAG-ATATACAAGTCCTAAA------A-CTTGCAGCAAACC---AGAAATA-CAGCAACTGCTGTTAATTTCTGCT-GACGGCCAACATGCGTGTA---------GATT--ACTG-----CGCG------G-ATC-TACATCCATTTGGAAATGTT----TATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATC-AA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACAG-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
Alignments
lowQualScore : 444444444444444444444 22222222222222222222222 1111111 111111 2222222222222 111111 11111111 111 111 11 1111111 22222222222 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 22222222 111 66666666666666666 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 222222222 1111 111111111111 1 11111 111 55555555555555555 1111 11111 55555555555555555 333 11111 2222 1 99999999999999999999999999999999999 1 44444 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 2 4 77777777777777777777777 4 0 4 1111111 55 2 000000 88888 7777 0000000000000 3 3 2 4 4 777777 77 2 44444444 4 555 4 000 4 0 4 11 2222222 5 8 66 6 1 777 77777777777 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 3 0 11 11 7777 3 0 11111111 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 8 88 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 555555555 4 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 1 66 4 00000000000000000 2222 0 999 00000 33333333333333333 333 77 5 5 1 5 333 77 77 00000 1 1 0000 1 4 7 3 5 1 0 22222222222222222222222222222222222 1 6 0 9 1 2 1 11111 66666 5 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . . . ....................... . . . ....... .. . ...... ..... .... ............. . . . . . ...... .. . ........ . ... . ... . . . .. ....... . . .. . . ... ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . . . .. .. .... . . ........ . . . . . . . ... . ................. . . .. . .. .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ..... ................. ... .. . . . . ... .. .. ..... . . .... . . . . . . . ................................... . . . . . . . ..... ..... . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 9 2 1 4 4 5 4 88888888888888888888888 0 9 0 8888888 00 4 555555 33333 7777 0000000000000 6 6 3 0 0 888888 11 5 99999999 0 222 0 999 4 6 0 99 6666666 0 5 99 7 0 555 33333333333 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 8 6 00 00 0000 8 8 00000000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 0 88 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 4 333333333 6 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 44444 33333333333333333 333 99 7 0 7 0 666 99 99 00000 7 7 8888 0 2 8 0 7 4 7 44444444444444444444444444444444444 0 7 7 8 0 5 5 55555 77777 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA-G-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAAA-T---ATGTCTAC-------GTTC---AA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATTG-A--TATACAA--GTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGTAAA------TGATTTCCGTCC--------------GCGG-ATC-TNCANCTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA-G-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAAA-T---ATGTCTAC-------GTTC--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TAT---A--TATACAA--GTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGTAAA------TGATTTCCGTCC--------------GCAG-ACCATNCAGCTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATC-CTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCA-TTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACA--CTTTTTATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGAT-AAAAAAGA--TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAAAAT---ATGTCTAC-------GTTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGTT-TATTAGA--TATACAA--GTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGGCCAACATGCGTGTAAA-------GATTACGG--C--------------GCGG-ATCTACCATCCATTTGGAAATGTTT-T-T--TTCTATTTCG-----ATAGCGT-GTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATC-GT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAAA-T---CCGTCTAC-------GTT-------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATT-CT-T---ATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATC-GT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCA-G-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATC-TC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATC-CA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCA-G-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAA-------------GAAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAAA-T---ATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGACAAT---------T---A--TTTACAA--GTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGCT-GACGGC-ACCATAAATGTATATATCCGTGACTT--GTCCGTGTTTTGTAAATGGCGC-ACCATGCATGTATCTACAACTGTACGTATATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATC-CT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGCT-AG--TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTT--TC----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCATG-TTTTT----A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAAT-AAAAAAAGACTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATC-CT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAA-TTATATATCTAC-------GTTC----A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGACAATTTTGTT-TATTA-A--TATACAG--Gct
gi|29 : GT----GCGTCCGGCACCCATAC---AAA-A---ATATCTAC-------G------AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCACAATTTTGTT-
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAAT-AAAAAAAAGCTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAG
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCA-G-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCATcg
gi|36 : t----------TTTT-----------ATT-CATCAGAAC-------TATT--TATACAAG------TGTTATCAT-----TTGTGCAcagaactatttatacaagtgttatcatttgtgca
gi|37 : tatagcatcttatgggagactgtcTGATGATTACTACT-GACGGC-ACCATGCGTATAAA------TAA
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------ccccggccaatcttca
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC--TTTTTTTGTATTG-A--TATACAA--GTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAAC------TGC----AATTGCTGTT-AA----------------------------TTTCTGCTG--------------ACGGCACCATACAGCTATTCGTAAATGTTC----ATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACTTA-AA----CA---CATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AAA-T---ATGTGTAC-------G------GG-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCACAATTTTGTT-TAT---A--CATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGTAAA----------TTACA-CC--------------GCAG-ATC-TTCAGCTATTCGTAAATGT---G-TATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGAT-AGAAAAATA-TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : TTTTATT-TATTG-A--TGTACAA--GTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGGC-ACCATGCGTGT--A------T-ATTTC--TCC--------------GCAG-GTC-TACAGCTGTTCGTACATGT---T-TATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAAA-T---ATGTCTAC-------GTCC-------AACCAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGACAATTTTGTT-TAT---AGATATACAA--GTCCTAAA------A-CTTGCAGCAAACC---AGAAATA-CAGCAACTGCTGTTAATTTCTGCT-GACGGCCAACATGCGTGTA---------GATTACTG--C--------------GCGG-ATC-TACATCCATTTGGAAATGTT----TATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATC-AA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACA-G-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
Alignments
lowQualScore : 444444444444444444444 22222222222222222222222 1111111 111111 2222222222222 111111 11111111 111 111 11 1111111 22222222222 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 22222222 111 66666666666666666 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 222222222 1111 111111111111 1 11111 111 55555555555555555 1111 111 44444444444444444 111 1111 99999999999999999999999999999999999 1 44444 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 2 4 77777777777777777777777 4 0 4 1111111 55 2 000000 88888 7777 0000000000000 3 3 2 4 4 777777 77 2 44444444 4 555 4 000 4 0 4 11 2222222 5 8 66 6 1 777 77777777777 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 3 0 11 11 7777 3 0 11111111 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 8 88 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 555555555 4 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 1 66 4 00000000000000000 2222 0 999 000 5 66666666666666666 333 77 5 5 1 0 5 88 444 111 1 6 4444 1 7 3 5 5 5 0 88888888888888888888888888888888888 5 1 1 5 1 1 11111 66666 5 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . . . ....................... . . . ....... .. . ...... ..... .... ............. . . . . . ...... .. . ........ . ... . ... . . . .. ....... . . .. . . ... ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . . . .. .. .... . . ........ . . . . . . . ... . ................. . . .. . .. .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ... . ................. ... .. . . . . . .. ... ... . . .... . . . . . . . ................................... . . . . . . ..... ..... . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 9 2 1 4 4 5 4 88888888888888888888888 0 9 0 8888888 00 4 555555 33333 7777 0000000000000 6 6 3 0 0 888888 11 5 99999999 0 222 0 999 4 6 0 99 6666666 0 5 99 7 0 555 33333333333 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 8 6 00 00 0000 8 8 00000000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 0 88 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 4 333333333 6 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 000 7 33333333333333333 333 99 7 0 7 4 0 77 333 333 7 7 2222 0 8 0 7 7 7 7 11111111111111111111111111111111111 7 4 0 7 0 5 55555 77777 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA-G-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA------TGATTTCCG-CC--------------GCGG-ATC-TAC-ANCTATTCGTAAATGT-C-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA-G-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA------TGATTTCCGTCC--------------GCGG-ATC-TNC-ANCTATTCGTAAATGTTC-T-TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATC-CTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCA-TTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACA--CTTTTTATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGAT-AAAAAAGA--TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---AATATGTCTAC--------GTT--C---CAACCAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGTT-TATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAA-CCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGG-CCAACATGCGTGTAAA-------GATTACGG--C--------------GCGG-ATC-TACCATCCATTTGGAAATGTTT-T-T--TTCTATTTCG-----ATAGCGT-GTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATC-GT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAA---A-TCCGTCTAC--------GTT------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATT-CT-T---ATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATC-GT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCA-G-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATC-TC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATC-CA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCA-G-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAA-------------GAAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAA---A-TATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGACAA------T-TATT-----TACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AATAGCAGCTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATAAATGTATATATCCGTGACTT--GTCCGTGTTTTGTAAATGGCGC-ACCATGC-ATGTATCTACAACTGTACGTATATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATC-CT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGCT-AG--TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTT--TC----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCATG-TTTTT----A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAAT-AAAAAAAGACTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATC-CT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAATTA-TATATCTAC--------GTT--C-A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGACAATTTTGTT-TATT-AATATACAGGct
gi|29 : GT----GCGTCCGGCACCCATAC---AA---A-AATATCTAC--------G-----AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCACAATTTTGTT-
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAAT-AAAAAAAAGCTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAG
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCA-G-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCATcg
gi|36 : t----------TTTT-----------ATT-CATCAGAAC-------TATT--TATACAAG------TGTTATCAT-----TTGTGCAcagaactatttatacaagtgttatcatttgtgca
gi|37 : tatagcatcttatgggagactgtcTGATGATTACTACT-GACGG-C-ACCATGCGTATAAA------TAA-CCCCG-----------------GCCA-ATC-TTC-A
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC--TTTTTTTGTATT-GATATACAAGTCCTAAACT-----TGCTGTA--AAA-C----AGTAGCAAC------TGC----AATTGCTGTT-AA-----------------------------TTTCTGCTG--------------ACGGCACCATAC-AGCTATTCGTAAATGTTC----ATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACTTA-AA----CA---CATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AA---A-TATGTGTAC--------G-----GG-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCACAATTTTGTT-TATA-CATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA----------TTACA-CC--------------GCAG-ATC-TTC-AGCTATTCGTAAATGT---G-TATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGAT-AGAAAAATA-TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : TTTTATT-TATT-GATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGT--A------T-ATTTC--TCC--------------GCAG-GTC-TAC-AGCTGTTCGTACATGT---T-TATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---A-TATGTCTAC--------GTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGACAATTTTGTT-TATA-GATATACAAGTCCTAAA---A----CTTGCAGCAAACC----AGAAAT-ACAGCAACTGCTGTTAATTTCTGCT-GACGGCC-AACATGCGTGTA---------GATTACTG--C--------------GCGG-ATC-TAC-ATCCATTTGGAAATGT---T-TATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATC-AA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACA-G-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
Alignments
lowQualScore : 444444444444444444444 22222222222222222222222 1111111 111111 2222222222222 111111 11111111 111 111 11 1111111 33333333333 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 22222222 111 66666666666666666 111 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 222222222 1111 111111111111 1 11111 111 55555555555555555 1111 111 44444444444444444 111 1111 88888888888888888888888888888888888888888888888 3 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 2 4 77777777777777777777777 4 0 4 1111111 55 2 000000 88888 7777 0000000000000 3 3 2 4 4 777777 77 2 44444444 4 555 4 000 4 0 4 11 00 2222222 5 8 66 6 1 6 44444444444 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 3 0 11 11 7777 3 0 11111111 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 666 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 555555555 4 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 1 66 4 00000000000000000 2222 0 999 000 5 66666666666666666 333 77 5 5 1 0 5 88 444 111 1 6 4444 1 7 3 5 5 5 0 11111111111111111111111111111111111111111111111 6 6 6 1 3 0 66666 5 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . . . ....................... . . . ....... .. . ...... ..... .... ............. . . . . . ...... .. . ........ . ... . ... . . . .. .. ....... . . .. . . . ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . . . .. .. .... . . ........ . . . . . . . ... . ................. . . .. ... .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ... . ................. ... .. . . . . . .. ... ... . . .... . . . . . . . ............................................... . . . . . . ..... . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 9 2 1 4 4 5 4 88888888888888888888888 0 9 0 8888888 00 4 555555 33333 7777 0000000000000 6 6 3 0 0 888888 11 5 99999999 0 222 0 999 4 6 0 99 22 6666666 0 5 99 7 0 7 00000000000 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 8 6 00 00 0000 8 8 00000000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 888 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 4 333333333 6 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 000 7 33333333333333333 333 99 7 0 7 4 0 77 333 333 7 7 2222 0 8 0 7 7 7 7 22222222222222222222222222222222222222222222222 7 7 7 0 2 2 77777 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TAC-AGCTATTCGTAAATGT-TTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TAC-ANCTATTCGTAAATGTCTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATC-CTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCATTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACA--CTTTTTATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGATAAAAAAGA---TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---AATATGTCTAC--------GTT--C---CAACCAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGTT-TATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAA-CCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGG-CCAACATGCGTGTAAA-------GATT---ACGG-------------CG-C---------GG-ATC-TACCATCCATTTGGAAATGTTTT-TTTCTATTTCG-----ATAGCGT-GTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATC-GT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAA---A-TCCGTCTAC--------GTT------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATT-CT-T---ATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATC-GT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCAG-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATC-TC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATC-CA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCAG-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAA-------------GAAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAA---A-TATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGACAA------T-TATT-----TACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AATAGCAGCTGCAATTGCTGTTAATTTCTGCT-GACGG-C-ACCATAAATGTATATATCCGTGACTTGTCCGTGTTTTGTAAATGGCG-CACCATGCATGT-ATC-TAC-AACTGTACGTA-------TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATC-CT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGCT-AG--TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTTT--C----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCAT-GTTTTT---A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAATAAAAAAAGA-CTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATC-CT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAATTA-TATATCTAC--------GTT--C-A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGACAATTTTGTT-TATT-AATATACAGGct
gi|29 : GT----GCGTCCGGCACCCATAC---AA---A-AATATCTAC--------G-----AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCACAATTTTGTT-
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAATAAAAAAAAG-CTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAG
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCAG-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCATcg
gi|36 : t----------TTTT-----------ATT-CATCAGAAC-------TATT--TATACAAG------TGTTATCAT-----TTGTGCAcagaactatttatacaagtgttatcatttgtgca
gi|37 : tatagcatcttatgggagactgtcTGATGATTACTACT-GACGG-C-ACCATGCGTATAAA------TAACC--CCGGC-------------C
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------aatcttca
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC--TTTTTTTGTATT-GATATACAAGTCCTAAACT-----TGCTGTA--AAA-C----AGTAGCAAC------TGC----AATTGCTGTT-AA-----------------------------TT--TCTGC-------------TGAC---------GGCACCATAC-AGCTATTCGTAAATGT-TCATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACTTA-AA----CA---CATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AA---A-TATGTGTAC--------G-----GG-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCACAATTTTGTT-TATA-CATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGTAAA----------T--TACAC-------------CG-C---------AG-ATC-TTC-AGCTATTCGTAAATGT-GTATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGATAGAAAAATA--TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : TTTTATT-TATT-GATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAA-C----AGTAGCAACTGCACTTGCTGTTAATTTCTGCT-GACGG-C-ACCATGCGTGT--A------T-ATT--TCT-C-------------CG-C---------AG-GTC-TAC-AGCTGTTCGTACATGT-TTATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---A-TATGTCTAC--------GTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGACAATTTTGTT-TATA-GATATACAAGTCCTAAA---A----CTTGCAGCAAACC----AGAAAT-ACAGCAACTGCTGTTAATTTCTGCT-GACGGCC-AACATGCGTGTA---------GATT--ACTG--------------CG-C---------GG-ATC-TAC-ATCCATTTGGAAATGT-TTATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATC-AA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACAG-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
Alignments
lowQualScore : 444444444444444444444 22222222222222222222222 1111111 111111 2222222222222 111111 11111111 111 111 11 1111111 33333333333 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 22222222 111 66666666666666666 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 222222222 1111 111111111111 1 11111 111 55555555555555555 1111 111 44444444444444444 11111 2222 88888888888888888888888888888888888888888888888 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 2 4 77777777777777777777777 4 0 4 1111111 55 2 000000 88888 7777 0000000000000 3 3 2 4 4 777777 77 2 44444444 4 555 4 000 4 0 4 11 00 2222222 5 8 66 6 1 6 44444444444 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 3 0 11 11 7777 3 0 11111111 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 8 88 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 555555555 4 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 1 66 4 00000000000000000 2222 0 999 000 5 66666666666666666 333 77 5 5 1 0 5 88 00000 1 1 0000 1 4 7 3 5 5 5 0 11111111111111111111111111111111111111111111111 6 6 6 1 3 66666 5 3 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . . . ....................... . . . ....... .. . ...... ..... .... ............. . . . . . ...... .. . ........ . ... . ... . . . .. .. ....... . . .. . . . ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . . . .. .. .... . . ........ . . . . . . . ... . ................. . . .. . .. .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ... . ................. ... .. . . . . . .. ..... . . .... . . . . . . . . ............................................... . . . . . ..... . . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 9 2 1 4 4 5 4 88888888888888888888888 0 9 0 8888888 00 4 555555 33333 7777 0000000000000 6 6 3 0 0 888888 11 5 99999999 0 222 0 999 4 6 0 99 22 6666666 0 5 99 7 0 7 00000000000 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 8 6 00 00 0000 8 8 00000000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 0 88 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 4 333333333 6 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 000 7 33333333333333333 333 99 7 0 7 4 0 77 00000 7 7 8888 0 2 8 0 7 7 7 7 22222222222222222222222222222222222222222222222 7 7 7 0 2 77777 2 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TA-CAGCTATTCGTAAATGTTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TA-CAGCTATTCGTAAATGTTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATC-CTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCATTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACA--CTTTTTATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGAT-AAAAAAGA--TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---AATATGTCTAC--------GTT--C---CAACCAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGTT-TATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGGCC-AACATGCGTGTAAA-------GA-T--TACGG-------------CG-C---------GG-ATC-TACCATCCATTTGGAAATGTTTTTTTCTATTTCG-----ATAGCG-TGTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATC-GT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAA---A-TCCGTCTAC--------GTT------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATT-CT-T---ATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATC-GT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCAG-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATC-TC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATC-CA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCAG-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAA-------------GAAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAA---A-TATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGACAA------T-TATT-----TACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATAAATGTATATATCCGTGACTTGTCCGTGTTTTGTAAATGGCG-CACCATGCATGT-ATC-TA-CAACTGTACGTA------TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATC-CT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGCT-AG--TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTTT--C----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCAT-GTTTTT---A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAAT-AAAAAAAGACTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATC-CT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAATTA-TATATCTAC--------GTT--C-A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGACAATTTTGTT-TATT-AATATACAGGct
gi|29 : GT----GCGTCCGGCACCCATAC---AA---A-AATATCTAC--------G-----AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCACAATTTTGTT-
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAAT-AAAAAAAAGCTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAG
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCAG-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCATcg
gi|36 : t----------TTTT-----------ATT-CATCAGAAC-------TATT--TATACAAG------TGTTATCAT-----TTGTGCAcagaactatttatacaagtgttatcatttgtgca
gi|37 : tatagcatcttatgggagactgtcTGATGATTACTAC-TGACGG-C-ACCATGCGTATAAA------TAACC--CCGGC-------------C
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------aatcttca
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC--TTTTTTTGTATT-GATATACAAGTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAAC------TGC----AATTGCTGT-TAA-----------------------------TT--TCTGC-------------TGAC---------GGCACCATA-CAGCTATTCGTAAATGTTCATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACTTA-AA----CA---CATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AA---A-TATGTGTAC--------G-----GG-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCACAATTTTGTT-TATA-CATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA----------T--TACAC-------------CG-C---------AG-ATC-TT-CAGCTATTCGTAAATGTGTATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGAT-AGAAAAATA-TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : TTTTATT-TATT-GATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGT--A------T-ATT--TCT-C-------------CG-C---------AG-GTC-TA-CAGCTGTTCGTACATGTTTATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---A-TATGTCTAC--------GTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGACAATTTTGTT-TATA-GATATACAAGTCCTAAA------A-CTTGCAGCAAACC---AGAAATA-CAGCAACTGCTGTTAATTTCTGC-TGACGG-CCAACATGCGTGTA---------GATT--ACTGC--------------G-C---------GG-ATC-TA-CATCCATTTGGAAATGTTTATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATC-AA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACAG-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
Alignments
lowQualScore : 444444444444444444444 22222222222222222222222 1111111 111111 2222222222222 111111 11111111 111 111 11 1111111 33333333333 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 22222222 111 66666666666666666 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 222222222 1111 111111111111 1 11111 111 55555555555555555 1111 111 44444444444444444 11111 2222 88888888888888888888888888888888888888888888888 11111 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0 222222222222222222222 2 6 0 4 4 2 4 77777777777777777777777 4 0 4 1111111 55 2 000000 88888 7777 0000000000000 3 3 2 4 4 777777 77 2 44444444 4 555 4 000 4 0 4 11 00 2222222 5 8 66 6 1 6 44444444444 1 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 3 0 11 11 7777 3 0 11111111 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 8 88 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 4 555555555 4 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 1 66 4 00000000000000000 2222 0 999 000 5 66666666666666666 333 77 5 5 1 0 5 88 00000 1 1 0000 1 4 7 3 5 5 5 0 11111111111111111111111111111111111111111111111 6 6 6 1 3 66666 5 3 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : . ..................... . . . . . . . ....................... . . . ....... .. . ...... ..... .... ............. . . . . . ...... .. . ........ . ... . ... . . . .. .. ....... . . .. . . . ........... . .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . . . .. .. .... . . ........ . . . . . . . ... . ................. . . .. . .. .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... . ......... . .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ... . ................. ... .. . . . . . .. ..... . . .... . . . . . . . . ............................................... . . . . . ..... . . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 2 000000000000000000000 9 2 1 4 4 5 4 88888888888888888888888 0 9 0 8888888 00 4 555555 33333 7777 0000000000000 6 6 3 0 0 888888 11 5 99999999 0 222 0 999 4 6 0 99 22 6666666 0 5 99 7 0 7 00000000000 4 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 8 6 00 00 0000 8 8 00000000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 0 88 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 4 333333333 6 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 000 7 33333333333333333 333 99 7 0 7 4 0 77 00000 7 7 8888 0 2 8 0 7 7 7 7 22222222222222222222222222222222222222222222222 7 7 7 0 2 77777 2 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TA-CAGCTATTCGTAAATGTTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TA-CAGCTATTCGTAAATGTTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : TTTCTTCATTCATTGT------------T----------CATCC--------ACT--------ATATAATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATC-CTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCATTGCTTTGTAGA------AAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACA--CTTTTTATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGAT-AAAAAAGA--TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTGTTACATT-AA----AA---CACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---AATATGTCTAC--------GTT--C---CAACCAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGTT-TATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGGCC-AACATGCGTGTAAA-------GA-T--TACGG-------------CG-C---------GG-ATC-TACCATCCATTTGGAAATGTTTTTTTCTATTTCG-----ATAGCG-TGTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : ATTTCTTCATT-----TAC----T---A-T------A--GCATCTTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATC-GT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTTTTACATA-AA----CA---CATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAA---A-TCCGTCTAC--------GTT------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTAT----A-------------------CCCAAGGGGGAGTTTTTTTCTAT-TCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAATT-CT-T---ATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACT-A-T------A--GCAACCTATGGGACACTTTCTTT-TCT-TCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATC-GT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCAG-GTTTT----AG-----AAAAATATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacataTTC-AC----T---A-T------A--GCATCCTATGGGAGACT--------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATC-TC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : ACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTTTTAAA-A-AA----AC--ACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A---A-T------G--CCATCCTATGGAACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATC-CA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCAG-GTTTT----A------AAAAATCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAA-------------GAAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAA---A-TATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGACAA------T-TATT-----TACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATAAATGTATATATCCGTGACTTGTCCGTGTTTTGTAAATGGCG-CACCATGCATGT-ATC-TA-CAACTGTACGTA------TATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTAC----ATTTACT------AAGGCATCCTATGGGACTCTTTCTTT-TAC-TCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATC-CT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGCT-AG--TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCG--TTAAGTACAG----AA--ACACA---------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTTT--C----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCAT-GTTTTT---A------AAAAATATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAAT-AAAAAAAGACTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATC-CT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAATTA-TATATCTAC--------GTT--C-A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGACAATTTTGTT-TATT-AATATACAGGct
gi|29 : GT----GCGTCCGGCACCCATAC---AA---A-AATATCTAC--------G-----AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCACAATTTTGTT-
gi|3 : gaattatcact------AAAAATATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAAT-AAAAAAAAGCTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTTTTACATA-AACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAG
gi|30 : gAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCAG-GTTTT----AGATAAGAAAAAAATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATTTTACATA-AA----AA--GCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : tt---A-T------A--GCATCTTATGGGAGACTGTCTTT-TAT-TCATcg
gi|36 : t----------TTTT-----------ATT-CATCAGAAC-------TATT--TATACAAG------TGTTATCAT-----TTGTGCAcagaactatttatacaagtgttatcatttgtgca
gi|37 : tatagcatcttatgggagactgtcTGATGATTACTAC-TGACGG-C-ACCATGCGTATAAA------TAACC--CCGGC-------------C
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------aatcttca
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATTTTACATA-AA---------CACA----TGATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC--TTTTTTTGTATT-GATATACAAGTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAAC------TGC----AATTGCTGT-TAA-----------------------------TT--TCTGC-------------TGAC---------GGCACCATA-CAGCTATTCGTAAATGTTCATTTCTATTTAG-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACTTA-AA----CA---CATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AA---A-TATGTGTAC--------G-----GG-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCACAATTTTGTT-TATA-CATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA----------T--TACAC-------------CG-C---------AG-ATC-TT-CAGCTATTCGTAAATGTGTATTTCTATTTCG-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGAT-AGAAAAATA-TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : TTTTATT-TATT-GATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGT--A------T-ATT--TCT-C-------------CG-C---------AG-GTC-TA-CAGCTGTTCGTACATGTTTATTTCTATTTCGTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---A-TATGTCTAC--------GTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGACAATTTTGTT-TATA-GATATACAAGTCCTAAA------A-CTTGCAGCAAACC---AGAAATA-CAGCAACTGCTGTTAATTTCTGC-TGACGG-CCAACATGCGTGTA---------GATT--ACTGC--------------G-C---------GG-ATC-TA-CATCCATTTGGAAATGTTTATTTCTATTTCG-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTAC----A---A-TCACTATA--ACATTATATGGGATATTCTATTC-TAT-TAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATC-AA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACAG-ATTTT----A------GAGAAT-------------C----ATTAAGTTT-CAACTG
blockSeqs : CTTTACTATAG C T C . C . AATAATATAATTTTAAGG . A AGCGAAC GA T ATATAG AGGTG . ACCTTGTGCAGTT . A A C . ATATAT CT C CTCATA A TAC A ACA T C GG CCTCG A A TA . G . AGATAAG A . . . GT T T T G . CCTGT GA . A TAT . G . . G TGCCGTGTTATACGAATA T . . TTAA A CTTTTTTG . T A T G CAT T CATACATATTCTGTACA C . CA A AC . GAATTAACTTAGAGAATCAAAT . ACATGTATC TTTGAT G TAAC TATCAAATACATGCATCT GG . CT C AAAC T G . . . TCAAGTT G . T . . T AAA AATT A CTAGGC C CCATAAACA A TT AATG T AGTAGTT T A TA CTAGA A ATT A TG A G AC G TGAAGTGGGCGGGGG CCGG TTG ATT . AACCCGGGGTCTACAAT AAC AA A . A G A CTCAG T T C G G T A . . C ATATATCCGTGACTTGTCCGTGTTTTGTAAATGGCGCACCATGCAT C A . A A TTAAT C T TCAA CCTCT CA CATA AGA TCCCCGA A . A T . . TTT AGTT GCC ATTT GA AAT A T
blockSeqs : ATTTACTAAGG G T . . C . TTTTTCCT . . . . T . . . . . . G . . CCATA TG G GCTAG . TAC . A . T T G . T . . G . AG C . . . AG . . C A . . TT . . AA . G . . A TACCGGGTTATGCGAACT A . . . A AATTCTTG . . G . G . T . T . A . AC . TTAACCAAGAGGATCAAAT . . . A AC TCT AG . GT C AC C A . . . TTA . . T . . . . . A . . ACA C TT CTC . AGTAGTC . A TA . A . G . T G C G TGAATT . TTT . . GTCCAA AAC . . . A . G CTCAG T C . G A T C . . . AAATTACACCGC . . . G A . A T . . . . GC . . . . T . . TG TTTA . . C . . .
blockSeqs : AATCACTATAA C T . . G . TTTTG . . . . T . . . . . . T . . AATA AA C GTG . TAT . A . C . A . A . . T . TA A . . . TT . . C G . . GA . . AA . A . . . TGTGAACG G . . . A AAT . . G . G . C . T . G . GC . TTAAAT . . . T AC AT . . . A AC A G . . . TT . . A . . . . . T . . AAA A TG . . TGTCTTT . A TT . A . A . T A C G TGTC . TTT . . GTTCA AAT . . . A . C CTCAG T T . G A T C . . . ATATTTCTCCGC . . . G C . T T . . . . GC . . . . C . . T A . . A . . .
blockSeqs : TATAG G T . . C . TTTTG . . . . T . . . . . . G . . TCAA TT G CTT . TAC . A . T . G . G . . T . A A . . . . . C A . . TT . . AT . . . . . . . . G AAT . . T . . C . C . G . A . TCAAAT . . . T AA C C . G . . . TT . . T . . . . . A . . AAA A TA . . TGTATTT . . CA . A . A . T T G G CTC . T . . GTT AAT . . . A . G CT T T . G A A A . . . AGATTACTGCGC . . . G A . C T . . . . AA . . . . A . . T A . . T . . .
blockSeqs : TATAG C T . . C . TTCTG . . . . T . . . . . . A . . TTAA TG C GTG . TAC . A . C . G . A . . A . A A . . . . . C G . . TT . . A . . . . TAGT . . . C A . . . T . . . . . A . . AAG A TA . . AAAAGTT . . T . . . C . A G C G TC . T . . GAA G . . . A . G . . T . A . . . . . . TTTCTGCTGAC . . . T . . . G . . . . CC . . . . T . . C T . . A
blockSeqs : AATGC C G . . G . TTCTG . . . . T . . . . . . A . . ATAA CA G TCC . T . A . T . G . G . . . . . . . . . . . . . . T . . . . . A . . CA A C . . GCTAGT . T C G . . . . . GGG . . . . . . . . . . . GC . . . . T . . T A . . .
blockSeqs : A G C . . . . TTTT . . . . A . . . . . . G . . ATAT CG C CAC . C . T . . G . T . . . . . A . . . . . A . . CA . . . . A . . . . G . . . . C . . T A . .
blockSeqs : T . . . . GTG . . . . T . . . . . . G . . TT G G CTC . . . . . . . . . . . . . . . . . . . . . . . T G . .
blockSeqs : . . . . . . . . . . . . . . . A T G AAC . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : TTACTATAG************ TTTTG****************** **** ATAA** NTC***** TAC A** G****** AG********* ** **** C* G* TT** *** ** ** ** AAT***** ***************** AC ** ****** AC***** AC**** *** ** *** ** ****** ANA****** AGTAGTT***** TA GTTCAA*********** G* CTCAG **** ANATTACTCCGC*********************************** GC** ** A********
originalCons : ATTTCTTCATTCATTCTAC----A---A-T------A--GCATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATC-CT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTT----A------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AA----AA--ACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTAAA------TGATT--TCCGC-------------CG-C---------GG-ATC-TA-CAGCTATTCGTAAATGTTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
finalCons : ATTTCTTCATTCATTCTACTTACTATAG------------CATCCTATGGGACACTTTCTTT-TAT-TCATTCCCCAATGAA-TGTAATTTTTG------------------A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACAATAA--TGCGTAGAATCNTC-----TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTCG------AGTAT-TTGCGTA--GACAACTTCCAAA-TANCAG-GTTTTAG---------AAAAATATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAAC-AAAATCG-TAGAAATAAAATCAAAA-CTAAA-----CTATATTTT--TCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGAT-AAAAAAAAACTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNAAC-----AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAACAC----AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTTTTACATA-AAANA------CATAATTTTGATTNAAAATA----AATAAA-AAGTAGTT-----ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTACGTTCAA-----------CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATTG-ATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGTANATTACTCCGC-----------------------------------GG-ATC-TA-CAGCTATTCGTAAATGTTTATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AAGC--ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTTA--------AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Alignments
lowQualScore : 3333 33333333333333333333333 1111111 111111 2222222222222 111111 1111111 111 111 11 1111111 11111 1111 11111 1111 111 1 99999999999999999999999999999999999999999 11 11 1111 55555 111 66666666666666666 111 11 9999999999999999999999999999999999999999999999999999 222222222 333333 1111111 999999999999999999999999999999999 111 22 111111 111 11 111 2222222 111111 111111 11 1111 111111111111 1 11111 111 55555555555555555 1111 111 44444444444444444 11111 2222 333333333333 1111 22222222 222222222222 1111 11111 1111 1111111 1111 222222222 11 111
lowQualScore : 0000 0 1 2 55 4 0 55555555555555555555555 4 0 4 1111111 5555 2 0 000000 88888 7777 0000000000000 3 3 2 4 4 999999 77 2 4444444 4 555 4 000 4 0 4 11 2222222 5 8 66 6 1 99 6 66666 66 77 2222 6 11 5 5 66 55 0 5 44444 1111 000 5 0 999 6 7 99 6 6 33333333333333333333333333333333333333333 0 3 0 11 11 7777 3 0 22 44444 8 8 1 8 2 0 0 444 1 44444444444444444 1 8 99 666 11 6666666666666666666666666666666666666666666666666666 6 666666666 000000 1 4444444 999999999999999999999999999999999 66 777 33 5 222222 9 3 444 11 444 8888888 6 99 2 4 4 8 777 9999 2 777777 66 1 222222 22 22 0 9999 5 222222222222 0 0 0 5 1 99 66666 7 111 1 99 1 1 66 4 00000000000000000 2222 0 999 000 5 66666666666666666 333 77 5 5 1 0 5 88 00000 1 1 0000 1 4 5 5 5 77 3 1 555 5 1 77 444444444444 4444 44444444 555555555555 5 3 4444 66666 99 0000 7777 4444444 4 4 4 6 55 0 3 0000 111111111 777 9999 11 444 8 8
lowQualScore : .... . . . .. . . ....................... . . . ....... .... . . ...... ..... .... ............. . . . . . ...... .. . ....... . ... . ... . . . .. ....... . . .. . . .. . ..... .. .. .... . .. . . .. .. . . ..... .... ... . . ... . . .. . . ......................................... . . . .. .. .... . . .. ..... . . . . . . . ... . ................. . . .. ... .. .................................................... . ......... ...... . ....... ................................. .. ... .. . ...... . . ... .. ... ....... . .. . . . . ... .... . ...... .. . ...... .. .. . .... . ............ . . . . . .. ..... . ... . .. . . .. . ................. .... . ... ... . ................. ... .. . . . . . .. ..... . . .... . . . . . .. . . ... . . .. ............ .... ........ ............ . . .... ..... .. .... .... ....... . . . . .. . . .... ......... ... .... .. ... . .
lowQualScore : 9999 1 4 0 00 0 7 00000000000000000000000 0 9 0 8888888 2222 2 1 555555 33333 7777 0000000000000 6 6 3 0 0 000000 11 5 7777777 0 222 0 999 4 6 0 99 6666666 0 5 99 7 0 22 7 77777 00 99 1111 7 88 0 0 44 22 2 7 33333 9999 000 7 1 888 7 7 22 7 5 88888888888888888888888888888888888888888 8 8 6 00 00 0000 8 8 00 00000 0 0 4 0 5 2 8 000 4 00000000000000000 4 0 44 888 00 7777777777777777777777777777777777777777777777777777 7 777777777 777777 0 3333333 444444444444444444444444444444444 88 555 22 0 888888 0 2 000 00 000 0000000 7 22 3 4 4 9 888 4444 2 222222 11 9 888888 77 99 4 4444 0 000000000000 1 2 8 0 3 22 77777 3 777 5 22 9 0 44 3 00000000000000000 1111 4 444 000 7 33333333333333333 333 99 7 0 7 4 0 77 00000 7 7 8888 0 2 7 7 7 99 0 4 111 7 7 99 222222222222 2222 22222222 888888888888 2 2 2222 77777 22 6666 6666 4444444 0 0 0 4 55 2 6 3333 555555555 000 4444 00 000 0 0
consensus : ATTTCTTCATTCATTCTAC--TTACTATAGCATCCTATGGGACACTTTCTTTTATTCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACANTA-A-TGCGTAGAATCNT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA--GGTTT-T-----AGAAAAA-TATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAATTTTTGATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTT--TTACATA------AAACACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGT--ANATTACNCC-GCGGATCTN-CAGCTATTCGTAAATG------------TTTATTT----CT--------ATTTC------G-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
Reference ( family-677 ) : ATTTCTTCATTCATTCTAC--TTACTATAGCATCCTATGGGACACTTTCTTTTATTCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-ATT-TAGCAGAAC-------TATT--TTCACAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGTA-TCACAATA-A-TGCGTAGAATCNT-C---TTGTATATA-TATACTGTTATA-CATA--TAAA-ACGTATCGTTTG--TTTTTTTC----G--AGTAT-TTGCGTA--GACAACTTCCAAA-TANCA--GGTTT-T-----AGAAAAA-TATTAT--ACTTGCC----ATTAAATTT-CAACTGAATTACNTACACTATTTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTACTGTACA---AATAAG-AAAGGGAGATAACTCTA-ATCTG-AAATGTGACGTA--GGATGGGAAATCTACAAGCGT-CTGCTAAATGGAAT----------TGC----------GA--------ACG-----TGACTGTAAAATTAAAAATGGANGAAAAATCTCGAGATAT--TGATTAT--TTGAAAGTT----AATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ACTGGTGA-----------------TGTACACG-T-GTCTTCCAATGATAAAAAAAAA-CTGCTCGAA--GAAATGGAAA----------------T-------------CAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACCCAAAGCG------ATNA--AC---AACATAAGA---------------TNT---------------GCAGGACAGGCGACA---TTTTAG-TCTACTAAACGAAAC--AC--AAATTGGGACGTCAAAA---TAA--TTCAAGGT---AATTTCT----TTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGACCAGCTGAGAT---GTA----ATAT------CTACTAAGAGTT--TTACATA------AAANACATAATTTTGATTNAAAATA----AATAAA-AA--G-TAGTT--ATTAAAACAAGCGAATGGAATAAGGTACA-ATTTTATTTATACTAGAT-----CTACCGGCAA---AAC--ATTNAGC-CTAGCCC---G--T---C-----AAGT----GTGTCGGGCACCCATACTTTAA---A-TATGTCTAC--------GTT--CAA-CAACCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTG-ATTGACAATTTTGTT-TATT-GATATACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGT--ANATTACTCC-GCGGATCTA-CAGCTATTCGTAAATG------------TTTATTT----CT--------ATTTC------G-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACAGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAC--T-TTTT-----A---AT---GAAA----GC-NTTCG---GCTT-TCA-TAAAGT
gi|1 : ATTCCACAGTGAGGTATAAC----------TTTTTTAGGG---AGATT-AAGTA-AAC-------TATG--TACACAAA------TGCTATAAT-----TTCTACGGGGGATA-------------GGCA-TTTATTCATTGA-ATGTAATCACAATT---TCCG----ATCCTAC---ATGTATAGA-TAG--TGTTATA-CAT---TAAA-ACGTAT---TTG--TTTCTGTC----CCTACAAT-TTGT-TA--G-CAACTTTCAAAGTATCATTGCTTTGT-----AGAAAAAACATCATTTACTTGCTTTCAATTAAATTTTCAACTGAATGACCCACACTATTTAATCAAGATTCTAT-CTT-GCTAAAAGCTAAGGCAAAATCAGTTGAAATAAAATCAAAAATTAAA-----CGTTACTTGATTCATTACTGTACACGCATTAAG-AAAGGGAG----CTCAA-TTCTGTAAAT-TGATGTAAGGGA-GAGAAATCTACAAACGTTCTGCTAAATGGAAT----------TGC----------GGTGGTCTATACGAATATTGATTCTAAAATTAAAAATGGATAAAACATCTTGAGACATGTTGATTAAAATTGAAAGTT----A-TAAGCCAACGAACACTTTTT--ATAGTTGAGAT-AAA-A--CCCTTTCTCTG-------TGATGAA----------------TGGGAACGCT-TTCTTCCAATGATAAAAAAGA---TGATCGAAATGAAAGGGAAA----------------G-------------TAAATAAGTAAGAGAAGCAAAGTCTGGAAAATTCT---------AT--TTAAGGGTGCAAAATGTGTTG-AAAA--ACCATAACATAAGAGCAAGTCTGAATAATTTT---------------GCCGAACAGACGACAGTTTTTTGC-TCTACTAAA----AC--ACCAAAATTG--AC-TCAAAAACTTAAATTTCAAGGCCCCAATTTCT----T-AG-AATTTCCAACGCAGTAAAAATGCATACCATGAATTGACGAGCTGAGAT---AAA----GTTTA-----CCACTAATAGTG--TTACATT------AAA-ACACAATTTTGATTGAAAA-------ATGAA-AACTG-TAGGCGGATTAA---AAAC-AATCAAAT--GGAATA-AC-------ATAC---AT-----TT------------------TCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---AATATGTCTAC--------GTT--C---CAACCAACAAGCAACAAG--CG-TTTCGTTAGTTCCAAATTCGACTATGCATTGACTAATTTGTT-TATTAGATATACAAGTCCTAAAAACA-TGCC----AGCAAACCAGAAATA-CAGCAGAAACTGCTGTTAATTTCTGCTTGACGGCC-AACATGCGTGTAAAGATTACGGC-GCGGATCTACCATCCATTTGGAAATG------------TTTTTTT----CT--------ATTTC------G-----ATAGCG-TGTAGATGAATTTCATG----GACAATTGACAGTTTCT-----AATTTGTAAT--TGAATTAT----AA-GCTATT-------GAATATA-TAAATT-TATTTTGCACATCGAGAAATTTG-ATATAAAAAACCGAATCGCAAAC--G-TTTTCTATAA---AT---GAA
gi|10 : tttcttcattcattgttcatccactatataATTTCTTCATT-----------TACTATAGCATCTTATGGGACACTTTCTTTTATTCATTCCCCAATGAA-TGTAAT----------TTTT-----G---A-A-T-TAGCAGAAC-------TACT--TTCACAAG------TCTTACCGT-----ATGTGCAG----TAACCTTGTGCAGTTA-CA-TTTGTTTACTAA-ATGTA-TCACAAAT-A-TACTTACAATCGT-G---TTGTATATA-----------------A--TAAA-ACGAATCGTTTGT-TTTTTTTC----G--AGTAT-TTGCATA--GACAACga
gi|11 : tTAAGAGTT--TTACATA------AA-CACATAATTTTGAT--AACGTA----ATT--------GCTAGT---ATTCAAACAAGCAAATGGAATAAGATACA-GTTGT---TATACT----------T-CCAGCAA---AAC--AATGAAC-CTAGCC-------T---C-----AAGT----GTGTCAGGCATCCACATTTGAA---A-TCCGTCTAC--------GTT------TAACCAACAGGCGGCCAGAATGATTTCTTTAGCTCCAAATTCGAGTCTG-
gi|12 : TATTG--ATCATTACTGTACA---CATAAG-AAAGGGAGGTAATTCTA-A-------AT-TGATGTA--GGATGAGAAATCTACAAACGT-CTGCTAAATGGAAT----------TGCCGTGTTATACGA--------ATA-----TGATCGTAAAATTAAAAATGGATAAAACATCTTGAGACAT--TGATTAT--TTGAAAGTT----AATAAGCCAACGAACACTTTTTTGATAGT-GAGAT-AAA-
gi|13 : TCTCTTCATTCATTCTA----TAC--------CCAAGGGGGAGTTTTTTTCTATTCATTTCCCAATGAG-TATAATAATAATATAATTTTAAG--G---A-AAA-TAGC-GAAC-------TATT--TTCACAAGATATAGTGTTATCAT-----TTGTTTA-----TA-------------G-CA-TTTGTTCTCTGA-ATGTA-GCATATCA-A-TATGTAGAAT--T-C---TTATGT
gi|14 : caattATTTCTTCATTCATTTTACCTTTACTATAGCAACCTATGGGACACTTTCTTTTCTTCATTCGCCAATGAA-TG---------------------------------TAGGAGAAC-------TACTGAT-----AG------TGTTACCGT-----ACGTGCAG----TA-------------A-CT-TTTGTGCAGTTACATGTA-TCACATTA-A-AAAATACAATCGT-G---TTGTATATA-GA----GTTAT--TATA--TA
gi|15 : ccattG--TATTTTTC----A--AGTAT-TTGCTTA--TACAACTTCCAAA-TGGCA--GGTTT-T-----AGAAAAA-TATTCT--ACTTGCC----ATTAAATTT-CAACTGAATTACGTACACTATTTTAAAAAGTTTTTGT-CTT-GTTGGAAG--------AAAT-------ATTAAAAT-AAAA---AAT-----CTATGTTT--
gi|16 : ttggacata--TCACTATAGCATCCTATGGGAGACT------------TTC--------------------------TTTT-----G---A-ATT--AGCAGAAC-------TATT--TTCACAAG------TGTTATCATAGGTGCAGTGCAG----TA-------------A-CA-TTTGTTCACTGA-ATGCA-TCACAATATATTGTTTAGAATCTC-C---TTGTATATA-TAT--TGTTATA-CATA--TAAA-A
gi|17 : tACACTGTTTAATCAAGTTTTTAT-CTTTGTTGGAAGCTAAA------------GAAATAAAATCAAAA-CTAAA-----CTATATTT--TTCATTATTGTACA---AATAGG-AAAGGGAGACAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CT
gi|18 : ctgTTTTTGTTCTT-GCTAAAAGTTAAA-TAAAACC-GTAGAGATAAAATCAGAA-CTAAA-----CTATATCG--ATCAATACTATACA---AATAAG-AATGGGATATAACTCTATATCAG-AAAT-TGACGTA--GGATGAGAAATCTACAAATGT-CTGC
gi|19 : gaTTCTGTATAA-T-CATACCAT-AATTGACCGGTTGAGCT---GTA----ATAT------CTACTAAGCGTT--TTAAA-A------AAACACATACTTTTGATTTAAAATAAATGAATAAA-AA--G-TAGTT--ATCAAAACTAGCGAATGGAATAAAGTACA-ATTT
gi|2 : ATTTCTTCATTCATTCTAC----A--ATGCCATCCTATGGAACACTTTCTTTTATTCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCATAAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TTTGTACACT---ATGTA-CCACAATA-A-TGTGTACAATCCA-C---TTGTATATA-TATACCGTTATA-CATA--AAAA-ACGTTTTGTTTGGGTTTTTTTC----G--ATCAT-TTGCATA--GACAACTTCCAAA-TAGCA--GGTTT-T-----A-AAAAA-TCTTGT--ACTTGCC----ATTAAATTT-TAACTGAATTACAGACACTGTCTAATCAAGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAATC-ATAGAAATAAAATCGAAA-CTAAA-----CTATATT---------------CA---AATAAG-AAAGGGATATAACTCTA-AACTG-AAATGTGACGTA--GGATGGGAAATCAACAAGCGT-CTGCTAAATG--------------TGT----------GA--------ACG-----TGACTGTAAA-------------GAAAAATCTCGAGCTAA--TCATTAT--TTGAAAGTTTTAAAATAAGTCAACGAACAAAT-----ATAGT-GAGAT-AGA-AGATCCTTTCTCTGAT---ATTGGTGA-----------------TGTACGTA-T-ATCTTCCAATGATAAAAAAAAAACTGCTCAAA--GAAATGGAAA----------------T-------------TAAAT-----------------TCTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------ATGA--AC---AACATAAGA---------------TCT---------------GCAGGGCAGGCGGCA---GTTTAGCTCTACTAAACGAAAC--AC--AAATCGGAACGTCAAAA---TAA--TTCAAGGT---AATTTCTCAAGTTAG-AATTTC--ATTCTGTATAA-T-CATACCAT-AATTGGCCACTTGAGAT---GTA----ATAT------CTACTAAGAGTT--TTACATA------AAAAACATAATTTTGATTTAAAATA----ACTAAA-AA--G-TAGTC--ATTAAAAGAAGCGAATGGAATGAGGTACA-ATTTTATTTATATTAGAT-----TTACCGGCAA---AGC--ATTGAGC-CTAGTCTGAAG--TGGGCGGGGGAAGT----GGGTCGGGCACTCACAC--TAA---A-TATGTCTACAACCCGGGGTCTACAATCAACCAGCAAGCAGTAAA--CG-TTTCTTTAGCCCCAAATTCGAGTCTT-ATTGACAA------T-TATT-----TACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AATAGCAGCTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCATAAATGT--ATA-TA-TCC-GTGACTTGT-CCGTGTTTTGTAAATGGCGCACCATGCATGTATCTACAACTGTACGTATATTTCTATTTCG-----GTAGCGTTGCTGATAAATTTCATG----GAAAATTGACGGTTTAT-----AGTTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATATA-TAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCGAGTCGCAAAC--T-TTTT-----A---AT---GAAA----GC-CTTCG---GTTT-TCA-TAAAGT
gi|20 : ATTTCTTCATTCATCCTACATTTACTAAGGCATCCTATGGGACTCTTTCTTTTACTCATTCCCCAATGAA-TGTAAT----------TTCT-----G---A-ATT-TAGCAGAAC-------TATT--TTCTTCAG------TGTTACCAT-----TTGTGCAG----TA-------------A-CA-TT
gi|21 : attTGAA-TGTAAT----------GT-------G---A-GTTATAGCAGAACAGCGAACTATT--TTTTCAAG------TGTTACCTT-----TTGTGCAG----TA-------------A-CA-ATTGTTCGCTAT-GTGTA-TCACACCATA-TG-GTAGAATCCT-CATATAATATACA-TGTACTATTATA-Catg
gi|22 : GTAACC-T-----TTGTG-AG----TT-------------A-CAATTTGTTT-CTAA-ATGTA-TCACATT----TACAAACAATCGC-TAG-TTGTATATAATATATAGCTATAACAT---TAAATACAAATCGTTTG--TTTTTTTC----G--AGTATATTGTGTA--
gi|23 : tatagtgcaCTGTAAAG-T-CATAGCATTGATTGACCATCTGAGAT---AAA----GTTA------CGACTAGGCGTTAAGTACA-G------AAACACA-----------CAAAATA----GATAAA-AT--G-TCTTT--ATTAAAACAAACGAATGGAATAAGGTACATATT
gi|24 : TATACA-TGTACTGTTATA-CATA--TAAA-ATGTATTATTTG--TTTT--TC----G--AGTAT-TTGCAAA--GACAACTTCCAAA-TGTCA--TGTTT-T-----TAAAAAA-TATTAT--ACTTGAC----ATTAAATTT-CAACTGAAcc
gi|25 : aCTCCGAC---ATTGGTGA-----------------TGTATACG-T-GTCTTCCAATAATAAAAAAAGA-CTGCTCAAA--GAAATGGAAA----------------TTAACCAAGAGGATCAAAT-----------------TTTG-AAAATACT---------ATGATTGAGGACTCAAAGCA------A
gi|26 : GAATAT-AAAAACTGAATCGCAAAC--T-TTTC-----AGTTAT---GAAT----GC-CTTCG---GCAT-TCA-
gi|26 : -------GAATATA-TGAA-T-TATTTTGTTCATCGAGAAA--TGAATAT-AAAAACCGAATCGCAAAA--TGTTTG-----A---ATGCCGAAG----GC-ATTCaacattttgcgattcggtttttatattcatttctcgatgaacaaaataattcatatattc
gi|27 : gaatataaaaactgaatcgcaaacttttcagttatAGAAC-------TA------CATGTA------TGTTATCAT-----TTGTGCAG----TA-------------A-CA-TTTGTTTATTGA-ATGTA-C--------A-TGT-TAGAATCCT-C---TTG--TATA-TATACTGTTACA-CATT--TAAA-AC
gi|28 : ggagttgaaGGTACCCATACTTTAAATTA-TATATCTAC--------GTT--C-A-CG--CAACAAAGGACAAA--CG-TTTCTTTAGCCCCAAATTCGAATCTG-GTTGACAATTTTGTT-TATT-AATATACAGGct
gi|29 : GT----GCGTCCGGCACCCATAC---AA---A-AATATCTAC--------G-----AA-CAATCAACAATAGACAAG--CG-TTTATTTAGCCAAATATTCGAGTCTA-ATTCACAATTTTGTT-
gi|3 : gaattatcactGAAAAA-TATTAT--ACTTGCC----ATTCAATGT-CAACTGGATTACTTACACGATTTAATCAAGTTTTAAT-CTT-GTTGGAAGCTAAA-CAAAATC-GTAGAAATAAAATCAAAA-CCAAA-----CTATATTT--TTCATTACTGTACA---AATAAGAAAAGGGCGATAACTCTA-ATTTG-AAATATGACATA--GGATGGGAAATCTACAAGCGT-CTGCCAAATGAAATTACCGGGTTATGC----------GA--------ACT-----TGACTGTAAAATTAGAAATGGAAGGAAAATTTCGAGATCT--TGATTAT--TTGAAGGTT----AAT-AGTCAATGAAGAAAT-----ATAGT-GGGAT-AGA-AGATCATTTCTCTGAT---ACTGGTGA-----------------CGTATACG-T-GTCTTACAATAATAAAAAAAAG-CTGCTCGAA--GAAATGGAGA----------------T-------------CAAAT-----------------TCTG-AGAATACTACATGTATCATGATTGA-GACCCAAAGCG------ATAA--A----AACATAAGA----------------AT---------------AGAAAACA---GATA---TTTCAG----GATAAACGAAACAAAC--AAA-TGAGACGTCAAAA---TAA--TTCAAGGT---AAATTC-----TTAG-AATTTC--AGTCTGTATAA-T-CATGCCAT-AATTGACCAGCTGAGAT---ATA----ATATCTAGGCCTACTAAGAGTT--TTACATAAACCATAAACACATAATTTTGATTGAAAATACTC-CATAAA-AT--G-TATTT--TATAAAACAAGGAAATGGAACAAGGAACA-ATTTTATTCATACTAGAT-----CTATCGGCAA---AAC--ATTAAGC-GTAG
gi|30 : AGTTTTTAT-CTT-GTTGGAAGCTAAA-CAAAACC-ATAGAAATAAAATCAAAA-CTAAACCTGTCTATATTT--TTCATTATTGTACA---AACAAG-AAAGGGAGATAA
gi|31 : -ACGTTTCATTTC--TTTTTTTCCCTCG--TGTAT-TTGCGTATAGACGACGTCCAAA-TATCA--GGTTT-TAGATAAGAAAAA-AATTAT--ACTTGCT----ATTCAA
gi|32 : atAAACTGAATCGCAAAC--C-ATTT-----T---GT---GAAA----CT-TTTC
gi|32 : TATA-TATA-T-TATTTTGTTCACCGAGAAA--TGTATAT-AATAACT---TTGCAAAC--T-Ttatcaagtttgcaaagttattatatacatttctcggtgaacaaaataatatatatacc
gi|33 : aaactgaatcgcaaaccattttgtgaaacttttctatcATTAT----AG-G--ATT-------GAATACA-TAAA-T-CATTTTGCTGAACGAGATA--TTAATAT-AAAAACCGAAACACAAAC------TT-----A---AT---GAAA----GC-cc
gi|34 : tctaatgtacCTGTATAA-T-CATACCAT-AATTGACCAGTTAGGAT---GTAAATTATAT------CTACTGAGAATT--TTACATA------AAAAGCATAATT
gi|35 : ATTTA-TAAA-T-TATTTTGTTCATCGAGAAA--TAAATAT-AAAAACCGAATCGCAAAC------TA-----A---AT---GAAA----GC-a
gi|36 : ttTATAGCATCTTATGGGAGACTGTCTTTTATTCAT----CAG--------AAC----------T--------------ATT-TA--------------TA--------CAAG------TGTTATCAT-----TTGTGCAcg
gi|37 : TGATGATTACTAC-TGACGG-C-ACCATGCGTAT--AAATAACCCCGGCCAATCTT-CA
gi|38 : TGATTGAGGACCCAAAGCA------ATTA--AC---AACATACGA---------------
gi|39 : ATCAAGTTGTTAC-TTT-GTTAAAAGCTAAA-CAAAGTC-GTAGAAATaaagaaatcag
gi|4 : TGGAGG----------------T---------------AGT-----------------TCTG-AAAATGCT---------ATGATTGAGGACCAAAAGCA------ATTA--AA---AACATAAGA---------------
gi|4 : AAAAGAAAT---C--AAACTGGGACGTCAAAA---TAA--TTAAAGGT---AATTT--------AG-AAT---------------A-T-CGTGACAT-AATTTACCAATTGACAT---GTA----ATAT------CTACTAAGAATT--TTACATA------AA-CACAT------GATTAAAAAAA----AATAAA-AA------------------CAAGCGAATGGAATAAGGAAC--ATTTT-TTTATACTTGATCTAGACTACCGGCAAATTAAC--ATTTAGC-CTAGCCT---GAAT---T-----AAGT----GTGTCGGGCACCTACACTaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagCCCAAATTCGAGACTG-ATTGAC--TTTTTTTGTATT-GATATACAAGTCCTAAACT-----TGCTGTA--AAAC----AGTAGCAACTGCAATTGCTGTTAATTTCTGC-TGACGG-C-ACCAT---------------------------A-CAGCTATTCGTAAATG------------TTCATTT----CT--------ATTTA------G-----GTAGAGTTGCTGATAAATTTCCCG----GAAAATTGACAGTTTAT-----AGGTT----T--TG---TAT----A--GC-ATT-------GAATATAATATA-TATAC------CA-CGGTACA--TGTATAT-AAAAACCGAATCGTAAAC--T-TTTTTTT--A---AT---AAAA----GC-ATTCG---GCTT-TCA-TAAAGTaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaacttttttttaataaaagcattcggctttcataaagtttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|4 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaaAGTTTATCCTCTAATATGTAATCATGAAATATCATAAA-AA-ATTTCCCCGAGATTATA-CAAA-T-TATTTTGCTCATCGAGAAA--TGAATAT-AAAAACCAAATCGCAAAC--T-TT-----------AT---GAAA----GC----CGAATGCTT-TTATTAAAttgcgatttggtttttatattcatttctcgatgagcaaaataatttgtataatctcggggaaattttttatgatatttcatgattacatattagaggataaactca
gi|5 : tggaggtagttctgaaaatgctatgattgaggaccaaaagcaattaaaaacataagaaaagaaatcaaactgggacgtcaaaataattaaaggtaatttagaatatcgtgacataatttaccaattgacatgtaatatctactaagaattttacataaacacatgattaaaaaaaaataaaaacaagcgaatggaataaggaacatttttttatacttgatctagactaccggcaaattaacatttagcctagcctgaattaagtgtgtcgggcacctacactaaacccaaattcgagactgattgactttttttgtattgatatacaagtcctaaacttgctgtaaaacagtagcaactgcaattgctgttaatttctgctgacggcaccatacagctattcgtaaatgttcatttctatttaggtagagttgctgataaatttcccggaaaattgacagtttataggttttgtatagcattgaatataatatatataccacggtacatgtatataaaaaccgaatcgtaaactttttTTTCT----TAAGGAATTTC--ATTCTGTGTGA-T-CATACCAT-AATTGACCAGTTGAGAT---GTA----ATAT------CTACTAAGAGTT--TTACTTA------AA-CACATAATTTTGATTAAAAATA----AATAAATAA--A-AAGTT--ATTAAAACTAACGAATGGAATAAAGTACA-ATTTTATTTATACCAGAT-----CTACCGGCAA---ACCTGAATGATCACT-GTGT---G--T---C-----AGGCCCGGGTGTCGG-CACCCATACT--AA---A-TATGTGTAC--------G-----GG-CAATCAACAAGCGACAAG--CG-TTTCTTTAGCCCCAAATTCGAGTCTA-ATTCACAATTTTGTT-TATA-CATGTAGATGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGT--AAATTACACC-GCAGATCTT-CAGCTATTCGTAAATG------------TGTATTT----CT--------ATTTC------G-----GCAGTGTTGCTGATAAATTTCATGTCAACAAAATTAAca
gi|6 : ATTAAAAACGGAGGAAAAATTTCAAGATAT--AGATTAT--TTGAAAGTT----AGAAAGTCAACGAACAAATTCTTGATAGT-GAGATTATATAGATCTTTTCTCTGATCATACTGGTGACATACATATTCTGTACATATACACG-TCATCTACCAATGATAGAAAAATA--TGCTCGAA--GCAATGGAAAGAATTAACTTAGAGAAT-------------CAAAT-----------------TCTG-AAAATACT---------ATGACTGAGGGTCCAAAGTGTTTGATATCATAAC---AAAAGAAGA---------------TATCAAATACATGCATCTGCAGGACAAGCAACA---TTTTAGGTCTACTAAACGAAAC--AC--AAAATGGGACGTCAAAA---TAA--TTCAAGGT---AATGTC-----TTAG-AATTTC--ATTCTGTAATG-T-CATGCCAT-AATTGACCAGCTGAGATAAAGTA----AT---------TACTAA
gi|7 : TTTTATT-TATT-GATGTACAAGTCCTAAACTCAGTATCTTGTAGTAAAC----AGTAGCAACTGCACTTGCTGTTAATTTCTGC-TGACGG-C-ACCATGCGTGT--ATATTTCTCC-GCAGGTCTA-CAGCTGTTCGTACATG------------TTTATTT----CT--------ATTTC------GTTAATATAG-GTTGCTGATAAA---CATT----AAACAATGACAGTTTAT-----AGTTCGTAAT--TGAATTAT----AA-CC-ATT-------GAATATA-TAAA-C-TATTTTGTTCACAAAGAAA--TGAATAT-AGAAACTGAATCGCAAACTTT-TTTT-----G---GT---GAAAATTTGCGATTCG---GTTTATCA-
gi|7 : gATTAT----AAAGA-AAT-------AAATATA--ATA-C-CATTTTGCTCA-CGAAAAA--TGA---T-AAA--CCGAATCGCAAAT--T-TTttttcgtgagcaaaatggtattatatttatttctttataataaattgattatttctgctaaataattcagcacaactctcc
gi|8 : gttttatttattgatgtacaagtcctaaactcagtatcttgtagtaaacagtagcaactgcacttgctgttaatttctgctgacggcaccatgcgtgtatatttctccgcaggtctacagctgttcgtacatgtttatttctatttcgttaatataggttgctgataaacattaaacaatgacagtttatagttcgtaattgaattataaccattgaatatataaactattttgttcacaaagaaatgaatatagaaactgaatcgcaaactttttttggtgTTCAGC-GTA-CCC------T---C-----AAGT----GTGTCAGGTACCCATACTTTAA---A-TATGTCTAC--------GTC--CAA-C---CAACAAGCAACAAG--CG-TTTCGTTAGTCCCAAATTCGACTATG-ATTGACAATTTTGTT-TATA-GATATACAAGTCCTAAA------A-CTTGCAGCAAACC---AGAAATA-CAGCAACTGCTGTTAATTTCTGC-TGACGG-CCAACATGCGTGT--AGATTACTGC-GCGGATCTA-CATCCATTTGGAAATG------------TTTATTT----CT--------ATTTC------G-----ATAGCGGTGTAGATGAATTTCATG----GACAATTGACAGTTCTT-----AATTTGTAAT--TGAATTAT----AA-GC-ATT-------GAATAaaattgattatttctgctaaataattcagcacaactctcc
gi|9 : ttaaaacaatcaaatggaataacatacattTTCATTTTACAATCACTATAACATTATATGGGATATTCTATTCTATTAATTCGAAAGCTAA-TGTATT----------TTTT-----TCCTA-ATT-TATCAGAAC-------TATT--TTTACACT------CGTTACCAA-----TTGTGCAA----TA-------------A-CT-TGTGTTCACTGA-TTGCA-TTACGATA-T-TGCGTTGAATCAA-C---TTGTATATA-TA--CTGTTATA-CATACATAAA-ACGCACTGTTTG--TTTCTT-C----G--AGTAT-TTGCTTA--GACAACTTCCAAA-TAACA--GATTT-T-----AGAGAA---------------TC----ATTAAGTTT-CAACTG