lowQualScore : 3333 11 1111 1111111111111111111 22222222222222 1111 111111 33333333333 11111 1 22 111111 222222222222 1 55555555555555555555 99999999999999999999999999999999 1111 444444444444444444444444444444444 1111111 111111111111111 111 111 4444444444444444444444444444444 111 11 1
lowQualScore : 2 2 22 4 2 2 333 22 6666666 5555 2 2 2 2 2 33 11 2 4444 2 88 55 7777777777777777777 11111111111111 3 1111 2 7777 55 7777 2 000000 55 55555555555 3 66 3 3 3 9 3 3 00000 55 555 2 6 7 3 4 55 888888 777 000000000000 4 7 8 777 33333333333333333333 77 5 66666666666666666666666666666666 3 5555 88 666 55 333333333333333333333333333333333 3 44 1 3 0000000 3 888888888888888 66 222 1 333 2 2 33 222 5555555555555555555555555555555 66666 2 6 4 55 33 666 33 55 2 2 2 2 2 33 7777777 22 333 7 2 2 2 2 22 2 2
lowQualScore : . . .. . . . ... .. ....... .... . . . . . .. .. . .... . .. .. ................... .............. . .... . .... .. .... . ...... .. ........... . .. . . . . . . ..... .. ... . . . . . .. ...... ... ............ . . . ... .................... .. . ................................ . .... .. ... .. ................................. . .. . . ....... . ............... .. ... . ... . . .. ... ............................... ..... . . . .. .. ... .. .. . . . . . .. ....... .. ... . . . . . .. . .
lowQualScore : 1 1 99 2 0 0 555 88 8888888 5555 1 1 1 1 1 11 55 2 0000 4 44 99 2222222222222222222 88888888888888 6 4444 1 7777 00 7777 2 555555 00 66666666666 6 00 6 6 6 9 6 6 99999 00 888 9 7 0 6 0 11 222222 000 555555555555 0 5 0 888 44444444444444444444 00 0 66666666666666666666666666666666 6 2222 66 444 00 111111111111111111111111111111111 3 66 8 3 0000000 3 111111111111111 11 333 6 999 9 9 99 444 4444444444444444444444444444444 77777 9 6 7 66 22 444 44 88 2 2 2 2 2 11 2222222 99 777 9 0 0 0 1 99 1 1
consensus : AATCAATTTCAAACAG-GTG-GA--AAAAC-TGC-TG-TTCC---AGA--TG-------AAA--AG-T-TT-TTC-GTT-CTTCG-CT-NAATA-AAC--AAAT-AACAA--TAGGAAAGATTAA--G-CCCCGCCCAGAAAGATT---AAGNCC--CGCCCAAT-GC----TTG----CG--A----CTGGAC------TTGC--TTAG-TCA---ACGGAAT-GG-CGGA-TGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C--A--TA---TTTCGTTA-TCAAATTGCATGAAAATGCGAG-AGCTCCAG-GGNGCTTGTCCCCC-GCCC------------CC-TTAAAATTGTTTTC-AAAATACA---TTAAAGC--G-TTT------GCATGTAACCAAT-CTGATTAA--------TT-TA---A-------------AATCCCGC-TCCT-C--TG--CGAT---CC--TCTCCGATA--AAATAC-GA--CTTGT-A----AATC---CCGC-TCCTC--CGCGATC-CTC---T---CCGA-T--AA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGCG-C--TG--GG-C--G-G-G--CT-----T-----T------TC-----CTA-TTGTT-A--TTT--GTTT-ATTTAGC-GAAG-AA-C-G-AA-AA-ACTT--TT-------CA--T---CTGGAAC-A-GC-A-GTTTT--TC-CAC-CTGTTTGAAATTGATT
Reference ( gi|1 ) : AATCAATTTCAAACAG-GTG-GA--AAAAC-TGC-TG-TTCC---AGA--TG-------ATC--AG-T-TT-TTC-GTT-CTTCA-CT-CAATA-AGC--AAAT-AACAA--TAGGAAAGATTAA--G-CCCCGCCNAGAAAGATT---AAGGCC--CACCCAAT-GC----TTG----CG--A----CTGGAC------TTGC--TTAA-ATA---ACGGAAT-GA-CGGA-TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C--A--TA---TTTCGGTA-TCAAATTGCATAAAAATGCGAG-AGCTCCAG-GTTGCTTGTCCTCC-GCCC------------CC-TTAAAATTGGTTTC-AAAATACA---TTAAAGT--G-TTT------GCATGTAACCAAT-CTGATT----------TT-TA-G-A-------------AATCCCGC-TCCT-T--TG--CGAT---CC--TCTCCGATANGAAATAC-GA--CTTGT-A----AATC---CCGC-TCCTT--TGCGATC-CTC---T---CCGA-T--AA--C--------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGCG-C--TA--GG-A--G-G-G--CT-----T-----T------TC-----CTA-TTGCT-A--TTT--GTTA-ATTTAGC-GAAT-AA-C-G-AA-AA-ACTT--TT-------CA--T---CTGTAAC-A-GC-A-GTTTT--TC-CAC-CTGTTTGAAATTGATT
gi|6 : AATCAATTTCAAACAG-GTG-GA--AAAAC-TGC-TG-TTCC---AGA--TG-------AAA--AG-T-TT-ATC-GTT-CTTCC-CT-AAATA-AAC--CAAT-AACAA--TAGGAA---TT------------TTA-AAAGATT---AAGCCC--CGCCCAAT-GC----T-----------------GAAC------TTGC--TTAG-TTA---ACGGAAT-TC-TGGA-TACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC--A--GA---CTTCGTTA-TCAAATTGCATGAAAATGCGAG-AGGTTTAG-GGGGCT-------C-GCCC------------CC-T-AAAATT----TC-AAAATACA---TTAAATC--AATCT------G-AT-TGA--AAT-ATGACT----------TG-TA-----------------AATCCCGC-TCCT-C--TG--CGAT---CT--CCTCCGATA
gi|3 : AATGAATTTCAAACAG-GTG-GG--AAAAC-TGC-TG-TTCC---TGA--TG-------AAA--AG-T-GT-TTT-TTT-CATCG-CT-AAATA-AACA-AAAT-AACAA--TAGGAAAGATTAA--G-CCCCGCCCAG--CGATTGCAAAGG-----A--CAAT-G-------GAAAATG--A----CTGGTC------TTGC--TCAacactttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|3 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaaatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgacAATCCATTTCAAACAG-GTG-GA--AAAAC-TG-----TTCC---AGA--TG-------AAA--AG-T-TT-TTC-GTT-CTTCA-CT-CAATA-AAC--AAAT-AACAA--TAGGAAA
gi|19 : AATGAATTTCAAACAG-GTG-GT--AAAAC-TGC-CG-TTC----AGA--TG-------AAA--AG-T-TT-CTC-GCT-CTTCA-CT-GAATA-AAC--AAAT-AACAA--TAGGAAAGATTAA--GTCCCCGCCCAatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|17 : AATCAATTTCAAACAG-GTT-GT--AAAAC-TGC-TG-TTCC---AGA--TG-------AAA--AG-T-TT-TCC-TTT-CTTCG-CT--AA----------------AA--TATGAGAGATCAA--G-TCCCGCCCAG
gi|20 : tttcattttcctttccaagcgAATCAATTTCAAACAG-GTG-GA--AAAAC-TGC-TG-TTCC---AGA--TG-------AAA--AG-T-TT-TTTAGTT-CTTTG-CT-AAATA-AAC--AAAT-AA
gi|21 : taatgtttaattctcacAATCAATTTCAAACAG-GTG-GA--AAAAC-TGC-TG-TTCC---AGA--TG-------AAA--AG-G-TG-TTC-ATT-CTTAG-CG-AAACA-GAC--AAGT-AAC
gi|11 : AATGAATGTCAA-CAGCGTG-TT--AAA-C-TGCCTG-TTC----AGA--GG-------AAA--AG-T-TTCTTC-GCT-CTTCGGCTGCAATA-A-C--AAAT-AAAAAA-TAGGAAAGATTAAAGG-CCCCGCCCA
gi|27 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgacctccgttccgtttactgacctcagtcatgtgcattttgcgaagcctgAACCTATCTCAAACAG-GTG-GT--AAAAC-TGC-TG-TTCC---AGA--t
gi|24 : AATCAATTTCAAACAG-GTG-GAACAAAAC-TTC-CG-T--------------------------------------TT-CTTCA-CT-CAATA-AAC--Ag
gi|10 : acATTAATTTCAAACAT-GTG-GA--AAAAT-TGT-CG-TTCC---AGA--TG-------AAA--GG-T-TT-GGC-GTT-CTTCA-CT-CAATA-AAC--AA------------GGAACAAT--A--G----------GAAGGATT--------------------GC----TTG----CG--A----CTGGAC------TTGC--TTAG-CCA---ACGGAAT-GA-CGGA-TGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C--A--TA---TTTCGTTA-TCAAATTGCATGAAAATGCGAG-AGCTCCTG-GGTGCTTGTCCCCC-GCCG------------CC-TCAAAATTGTTTTC-AAAATACA---T
gi|2 : ATCAATTTCAAACAG-GTG-GA--AACACATTC-TGGTTCC---AGA--TG-------A-A--AA-T-TT-TTC-GTT-CTTCA--T-CA-TA-A-C--AA-T-AACA---TAGGAA-----------------------AGATT---A--GCC--CGCCCTATTGCG---TTG----CG--A----CTCG-C------TTGC--TTAATATAGTTATGCGCT-GAACGG--TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CT-A--GA---TTTTGTTA-TCAA-TTGCATGAAAATGTGAG-AG-TTTAG-G--GCT----CTCC---------------------TAGAAATGTTTTCAAAAATGCA---TTAGAAT---------------------CGAAT-CTGATTAAAATAG---CT-TG-T-A-------------AATCCCGC-TTCT-A--AGGACTATATGCCGATCTCCGATA--AACT-------CTT----------------TGC-TCTCT--CGCCGTT-CCG---T---TTGACT--GAGGC--------AGG--T-AGTC--ATTCCATTGTCCTTTGC-AAGAG-C--TG--GC-G--G-G-G--CTTATC-T-----C------TC-----CTATTTGTTCA--TTT--GTTT-ATTTAGC-G--TGAA-T-G-AA-AACACTT--TTTTTTTTCTA--T---CTGGTAT-G-GC-A-AGTTT--TT-CAC-CTG-TTGAAATTGA
gi|13 : ATCAAGTTCAAACAG-GTG-GT--AAAACTTGT-TG-TTCCAAGAAA--TG-------AAA--AGTT-TT-TTC-GCT-CTGCG-CT-AAATAGAACAGAAGT-AACAAAGAAGGAGA-ATTAA--G-CCCCACCCAG
gi|2 : tctcgccgtatccgctgacctgagcaaagtcagtcattttccattttcctttgcaagcgcTCAATTTCAA-CAG-GTG-AA--AAACT-TGC-CA-TACC---AGA--TAGAAAAAAAAA--AG-TGTT-TTC-ATT-CA-CG-CT-AAATA-AAC--AAATGAACAAA-TAGGAGAGAT-AA--G-CCCCGCC
gi|4 : atcaatttcaaacaggtggaaacacattctggttccagatgaaaatttttcgttcttcatcataacaataacataggaaagattagcccgccctattgcgttgcgactcgcttgcttaatatagttatgcgctgaacggtgtttgaagatagtagcctagcgatttcaacgcctagattttgttatcaattgcatgaaaatgtgagagtttagggctctcctagaaatgttttcaaaaatgcattagaatcgaatctgattaaaatagcttgtaaatcccgcttctaaggactatatgccgatctccgataaactctttgctctctcgccgttccgtttgactgaggcaggtagtcattccattgtcctttgcaagagctATTCCAAACAG-GTG-GA--AAA-C-TGC-TG-TTTC---AGA--TG-------AAA--AG-T-TT-TTC-GTT-CTTTA-CC-CAATA-AAC--AAAT-AACAA--TAGGAAACATTAA--G-TCCCGC
gi|7 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtATTNNNNNNNN-NNN-NN--NNNAC-TGC-TG-TTCC---AGA--TG-------AAA--AG-T-GT-TTC-GTT-CC-------------------AAT-AACAA--TAGGAA-----------------------AGACT---AAGTCC--CGCCCAAT-GC----TTG----CT--A----CTGGAC------TTGT--TTAG-TCA---AC-GAAT-GG-CGTA-TGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G--A--GA---TTTCGTTA-TCA------GTGAAAATGCGAG-AGCTCCAGCCCCCCCCCCCCTCC-TTCC------------CCATT----TTATTTTC-AAAATACA---TTAAAGC--G-TTT------AAATATAACCAAT-CTGATTAA--------AT-TACG-ACTTGTG-------AAT--CGC-TCCT-T--AG--CGTT---CC--TCTCCGATA
gi|25 : ATTTCAAACAG-GTG-GA--AAAGC-TGC-TG-TTTC---AGA--TG-------AAA--AG-T-TT-TTC-GTT-Cacactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|5 : TTCCAAACAG-GTG-GG--AAATC-T-C-TG-TTCC---AGA--TG-------AAA--AG-T-TT-TTG-GTTTCTTCA-CT------------AAAT-AA-------------ATT---------------GAAATATT---TAAGCCACCGCCCA-T-GC----TTG----CG--A----CTGGATCGATTATTGC--TTAG-TCC---AAAGAATTGG-CAGA-TGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--CAAA--TA---TTTTGTTA-AATAATTGCAATGAAATGTGAGAAGCTCCAG-G-GGCTTGTTC-CC-GCCCTTATTTTTATATCC-TTAAAATTGTTTTC-AAAATACA---TTAAAGC--A-TTT------ACATGTAATCAAT-CTGATTAAAATATGACTTGTACGTA-------------AATCCTGC-TCTT-C--TG--CAAT---CC--TCTCCGATAga
gi|22 : atTTGAAA-AG-GTGTGA--AATAC-TGC-TG-TTTC---AGAGTTG-------AATAAAG-T-TT-TTC-GCT-CTTCA-acactttttactctctcgcag
gi|16 : tttacGC-TG-TTCC---AGA--CG-------AAA--AG-T-TT-TTC-GTT------------------C--AAAT-AACAA--TAGGAGAGAGTAA--G-CCCCGCCGAGtag
gi|18 : ctctttgctctctcgccgttccgttgactgggcaaggtcaattatgcaagcgAATA-A-T--AAAT-AACAA--TAAGAAAGATTAA--G-CCCCGTCCAGCGAGA
gi|8 : acgacttgtaaatcctgctcctctgtgatccgccccgttagatctaacactttttgctc--TAGGAGAGATTAA--G-CGCCGCCC--AATGGTTGAAAAGG-----A--AAAT-GCAAAAT-------G--A----CTGACC------TTGC--TCAG-TCA---ACAGAAta
gi|4 : gaatggcggatgtttaaaattgaagcccaagcaatatcacgccatatttcgttatcaaattgcatgaaaatgcaagagctccagggtgcttgtccccctgtccccttaaaattgttttcaaaatatgtacttaaagcgtttacatgtaaccaatctgatttttaaaaatacgacttgtgaatcccgctcgtctgtgatcctctccgataacaccctttgctctctcgcagATT---AAGTCC--CGCACAAT-GC----TTG----CG--ATATGTTGAA--------TACTATTAA-ACA---AC------AA-CACATTGTGTGG-A-ATT---------AGCAACGACA-CGCTGC--AGCTA---TTT-AGTATTCAACTTTCAT
gi|16 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaT---AAGCCC--CGCCGAGC-GC----TTG----CATAA----TTGACC------TTGC--CCAG-TCA---ACGGAAC-GG-CGgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|4 : ctctttgctctct---AAGTCC--CGCCCAAG-GC----TTG----CG--A----CTAGAT------TTGC--TTA----------------GT-CG---TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C--A--TA---TTTCGTTA-TCAAATTGCCTGAAAATGCGAG-AGCTCCGG-GGCGCTTGTCC-CC-G-CC------------CC-TTATAATTGTTTTC-GAAATA--------------------------CATGTAACCAAT-CTGATT----------TT-CA---A-------------AATCCCGC-TCCT-C--TG--TGAT---CC--TCTCCGATActctctcctattgttatttgaacgaaaaacttttcgtctggaacagc
gi|3 : agaAAT-GC----TTG----CG--A----CTGGAC------TTG------------------AAT-GA-TAGA-TGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C--A--GA----TTCGTTA-TCAAATTGTATGAAAATGTGAG-AGCTTCAG-GGGGTT-----------CC------------CC-CTAAAATAATTTTC-AAAATACA---TTAAA-TCAA-TCT------G-AT-TAA--AAT-ACGACT----------TG-T----A-------------AATCCCAC-TCCT-C--TG--CGAT---CC--CCTCCGTTA------AC--A--CT-----------------------CTT--TGC--TCTCTC---G---CTGA-CTGAG--CA-------AGA--CCAGTCATTTTCCATTGTCCTTTGC-AATCG-C--TG--GGCG--G-G-G--CTTAATCT-----T------TC-----CTA-TTGTT-AT-TTT--GTTT-ATTTAGC-GATG-AA-A-A-AA-AC-ACTT--TT-------CA--T---CAGGAAC-A-GC-A-GTTTT--CC-CAC-CTGTTTGAAATTCATTacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|8 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaGAAT-GG-CGGA-TGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C--A--TA---TTTCGTTA-TCAAATTGCATGAAAATGCAAG-AGCTCCAG-GGTGCTTGTCCCCCTGTCC------------CC-TTAAAATTGTTTTC-AAAATATGTACTTAAAGC--G-TTT------ACATGTAACCAAT-CTGATT----------TT-TA-A-AAATACGACTTGTGAATCCCGC-TCGT-C--TG--TGAT---CC--TCTCCGAT----AACAC--C--CTT----------------TGC-TCTCT--CGCAGTT-CTG---TTGACTGA-G--CA-----------AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACCA-T--TG--GG-C--G-GCG--CT-----T-----
gi|15 : AT-GG-CGGA-TGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C--A--TA---TTTCGTTA-TCGAATTGCACGCAAATGAGAG-AGCTCCAG-GGTGCTTGTGTCCC-GCCC------------CC-TTAAAAATGTTTTC-aatctctccta
gi|12 : A-CGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C--A--TAGTATTTCGTTC-ACAAATTGCATGAAAACGCGAG-AG
gi|23 : ---TTTCGTTAATCAAATTGCATGAAAACGCGAG-AGTTTCAG-GGGGCTTGCCCCCC-CCCtattcaaaaaaatgtatattccgctcctcttatgatcctctccaatactcactaaaagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|14 : CC-GCCC------------CC-TACAAGTTG-TTTCGAAAATACA---TTAGAGC--G-ATTAATACAGCA---AACAAATACTGATT----------TT-T--T-A-------------AATCCCGCATCCT-CAATG--TGAT---CC--TCT-CGATA
gi|11 : ctc-A-------------ATTCCCGC-TCCT-TG-TGA-TGAT---CC---CTTCGAT--TAAACAC-TC--CTGG---------------CAC-TC--T--CACGA-C-CTCCGTT---CCGT-T--TA--C--------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGC--C--TGTGGG-C--G-G-GGCCT-----T-----TAATCTTTC-----CTA-TTTTTTA--TTT--GTTA-TTGCAGCCGAAG-AG-C-G-AAGAA-ACTT--TT-------CC--T---CTG-AAC-AGGC-A-G-TTT--AA-CACGCTG-TTGACATTCATTaacactctgctctctactacccgttccgttgact
gi|9 : -------------AATCTCGC-TCCT-C--TG--CGAT---CC--TC-CCGTTA--AAGTAC-t
gi|12 : acatacgaaacttgtATTCCGC-TCCTCT--TA--TGAT---CC--TCTCCAATACTCACTAA-AA-----GT-A----GATCTTACCGC-GCCGT--TCCG-----TT---T---AC---T--GA--C----------C--TCAGT-------CATTGTCATTTGC-AAGCG-C--Ttcctttgctacagtgtatctcgccgagttcgttgactgtagcaataccaagtctctgcaagcgctggagcgccacaggccttaattttcggtttatttaagccgctcagggacttgcgaagagcgtaaaaagcacgtattaaatcaatcgggaactcagcaagtcttttctaccttaccgaaatcgatttgaaagtcagttg
gi|6 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaatgtatTCTGAT-TGAAATAT-GA--CTTGT-A----AATC---CCGC-TCCTC--TGCGATC-TCC---T---CCGA-T--AA--C--------Ag
gi|5 : aatcaatttcaaacaggtggaaaaactgctgttccagatgaaaagtttatcgttcttccctaaataaaccaataacaataggaattttaaaagattaagccccgcccaatgctgaacttgcttagttaacggaattctggatacttgaaatagtagccgaagaaatttcacgcgccagacttcgttatcaaattgcatgaaaatgcgagaggtttagggggctcgccccctaaaatttcaaaatacattaaatcaaTCTGAT-TAAAATAT-GA--CTTGT-ACGTAAATC---CTGC-TCTTC--TGCAATC-CTC---T---CCGA-T--AA--C--------Actttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|7 : atttccaaacaggtgggaaatctctgttccagatgaaaagtttttggtttcttcactaaataaattgaaatatttaagccaccgcccatgcttgcgactggatcgattattgcttagtccaaagaattggcagatgtttgagaatagtagcgccaagcaatttcatgccaaatattttgttaaataattgcaatgaaatgtgagaagctccaggggcttgttcccgcccttatttttatatccttaaaattgttttcaaaatacattaaagcatttacatgtaatcaaTCTGAT-TAAATTAC-GA--CTTGT-G----AATC-----GC-TCCTT--AGCGTTC-CTC---T---CCGA-T--AA--CACTCTTTGAGG--CCAGTC-TTTTCCCTT----TTTGC-CGG-G-C--GG--GG-C--GAA-G--CT-----T-----T------TC-----ctttttactctctcgcag
gi|14 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaaAAATACTGA--TTTTTTA----AATC---CCGCATCCTCAATGTGATC-CTC---T----CGA-T--AA--
gi|9 : ctcccgccccctacaagttgtttcgaaaatacattagagcgattaatacagcaaacATAC-GAAACTTGT-A----A-TC---TCGC-TCCTC--TGCGATC-CTC-------CCGT-T--AA--acactctgctctctactacccgttccgttgact
gi|18 : acAC-GA--CTTGT-A----AATC---CTGC-TCCTC--TGTGATC-CGC---C---CCGT-T---------------AGA--TC--TAACACT---TTTTGCTCTCT----CG-C--T---GG-ACGG-G-G--CTTAATCT-----T------TC-----TTA-TTGTT-A--TTT--ATT--ATTTAagtactcctttgctacagtgtatctcgccgagttcgttgactgtagcaataccaagtctctgcaagcgctggagcgccacaggccttaattttcggtttatttaagccgctcagggacttgcgaagagcgtaaaaagcacgtattaaatcaatcgggaactcagcaagtcttttctaccttaccgaaatcgatttgaaagtcagttg
gi|4 : -A----AATC---CCGC-TCCTC--TGTGATC-CTC---T---CCGA-T--AA--C--------A
gi|13 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttca--------AAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGCGCC--TG--GGTG--G-G-G--CT-----TAA---T------TCTCCTTCT--TTGTT-ACTTCT--GTTCTATTTAGC-GCAG-AG-C-GAAA-AA-ACTT--TT-------CA--TTTCTTGGAAC-A-ACAA-GTTTT--AC-CAC-CTGTTTGAACTTGATctcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|26 : tctcgccgtatccgctgacctgagca--------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGCG-C--TG--GG-C--G-G-G--
gi|17 : TTTCATTTTCCTTTCC-AAGCG-C--TG--GG-C--G-G-GA-C------------------------------TTGAT-C--TCT--CATA-TTTTAGC-GAAG-AA-A-G-GA-AA-ACTT--TT-------CA--T---CTGGAAC-A-GC-A-GTTTT--AC-AAC-CTGTTTGAAATTGATTg
gi|4 : TCGC-AAGCA-T--TG--TG-C--G-G-GA-CT-----TAATGTT------TC-----CTA-TTGTT-A--TTT--GTTT-ATTGGGT-AAAG-AA-C-G-AA-AA-ACTT--TT-------CA--T---CTGAAAC-A-GC-A-G-TTT--TC-CAC-CTGTTTGGAAT
gi|2 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacataTCGC-AA-CG-CAATA--GG-GC-G-G-G--CTAATC-T-----T------TC-----CTA-T-GTT-A--TT---GTTA----TGAT-GAAG-AA-C-G-AA-AA-A-TT--TT-------CA--T---CTGGAACCA-GA-ATGTGTT--TC-CAC-CTGTTTGAAATTGAT
gi|16 : TGC-AAGCG-C--TC--GGCG--G-G-G--CT-----TACTCTC------TC-----CTA-TTGTT-A--TTT--G-----------------AA-C-G-AA-AA-ACTT--TT-------CG--T---CTGGAAC-A-GC-ctcgcttgcttaatatagttatgcgctgaacggtgtttgaagatagtagcctagcgatttcaacgcctagattttgttatcaattgcatgaaaatgtgagagtttagggctctcctagaaatgttttcaaaaatgcattagaatcgaatctgattaaaatagcttgtaaatcccgcttctaaggactatatgccgatctccgataaactctttgctctctcgccgttccgtttgactgaggcaggtagtcattccattgtcctttgcaagagctggcggggcttatctctcctatttgttcatttgtttatttagcgtgaatgaaaacacttttttttttctatctggtatggcaagtttttcacctgttgaaattga
gi|7 : ctctttgctctctcgccgttccgttgactgggcaaggtcaattaGC-AAGCA-T--TG--GG-C--G-G-GA-CT-----TAGTCTT------TC-----CTA-TTGTT-A--TTG--G-----------------AA-C-G-AA-AC-ACTT--TT-------CA--T---CTGGAAC-A-GC-A-GTNNN--NN-NNN-NNNNNNNNAAT
gi|3 : T-----T-----T------TC-----CTA-TTGTT-A--TTT--GTTT-ATTGAGT-GAAG-AA-C-G-AA-AA-ACTT--TT-------CA--T---CTGGAA-----C-A-GTTTT--TC-CAC-CTGTTTGAAATGGATTtactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaatctgattaaattacgacttgtgaatcgctccttagcgttcctctccgataacactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|19 : -----T-----T------TC-----CTA-TTGTT-A--TTT--GTTT-ATTCAGT-GAAG-AG-C-G-AG-AA-ACTT--TT-------CA--T---CTG-AAC-G-GC-A-GTTTT--AC-CAC-CTGTTTGAAATTCATTtgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|6 : -----T------TC-----CTA-TTGTT-A--TTG--GTTT-ATTTAGG-GAAG-AA-C-G-AT-AA-ACTT--TT-------CA--T---CTGGAAC-A-GC-A-GTTTT--TC-CAC-CTGTTTGAAATTGATTgattaagtccccgccca
gi|10 : -----T------TC-----CTA-TTGTT-C--CTT--GTTT-ATTGAGT-GAAG-AA-C-G-CC-AA-ACCT--TT-------CA--T---CTGGAAC-G-AC-A-ATTTT--TC-CAC-ATGTTTGAAATTAATttttaaaagattaagccccgcccaatgctgaacttgcttagttaacggaattctggatacttgaaatagtagccgaagaaatttcacgcgccagacttcgttatcaaattgcatgaaaatgcgagaggtttagggggctcgccccctaaaatttcaaaatacattaaatcaatctgattgaaatatgacttgtaaatcccgctcctctgcgatctcctccgataacactttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|21 : GTT-A--CTT--GTCT-GTTTCGC-TAAG-AA-T-G-AA-CA-CCTT--TT-------CA--T---CTGGAAC-A-GC-A-GTTTT--TC-CAC-CTGTTTGAAATTGATTggattgcttgcgactggacttgcttagccaacggaatgacggatgtttgaaatagtagcccaagcaatttcacgccatatttcgttatcaaattgcatgaaaatgcgagagctcctgggtgcttgtcccccgccgcctcaaaattgttttcaaaatacat
gi|5 : T-A--TTTCAATTT-ATTTAGT-GAAG-AAAC-C-AA-AA-ACTT--TT-------CA--T---CTGGAAC-A-G--A-GATTT--CC-CAC-CTGTTTGGAA
gi|20 : atT-A--TTT--GTTT-ATTTAGC-AAAG-AA-CTA-AA-AA-ACTT--TT-------CA--T---CTGGAAC-A-GC-A-GTTTT--TC-CAC-CTGTTTGAAATTGATTtttaagccaccgcccatgcttgcgactggatcgattattgcttagtccaaagaattggcagatgtttgagaatagtagcgccaagcaatttcatgccaaatattttgttaaataattgcaatgaaatgtgagaagctccaggggcttgttcccgcccttatttttatatccttaaaattgttttcaaaatacattaaagcatttacatgtaatcaatctgattaaaatatgacttgtacgtaaatcctgctcttctgcaatcctctccgataacactttttactctctcgcag
gi|22 : taatgtttaattctcactTTTACT-GAAG-AG-C-G-AA-AA-ACTTTATT-------CAACT---CTGAAAC-A-GC-A-GTATT--TCACAC-CT-TTTCAA
gi|25 : -AA-C-G-AA-AA-ACTT--TT-------CA--T---CTGAAAC-A-GC-A-GCTTT--TC-CAC-CTGTTTGAAATtag
gi|27 : g--T---CTGGAAC-A-GC-A-GTTTT--AC-CAC-CTGTTTGAGATAGGTTga
gi|24 : AAC-G-GA-A-GTTTTGTTC-CAC-CTGTTTGAAATTGATTg
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 111111 0000000000000000000000000000 111111 11111 111111111111 44444444444444444444 999999999999999999999999999999999999999999999 111 444444444444444444444 1111111111111 222222222222222222222 1111111 2222222222222222222222 111111 111 1111111
lowQualScore : 3 44 2 3 3 3 3 3 999999 1 0 4 0 0000000000000000000000000000 66666 55 3 111111 00000 4 55 3 1 3 3 3 3 55 3 55 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 77777777777777777777 4 999999999999999999999999999999999999999999999 3 99999999 3 77 44 111 4 777777777777777777777 2 0 4 4 7777777777777 777777777777777777777 4 444 3 44 3 3 3333333 3 77 3 8888888888888888888888 66 55 7 88 99999 222222 3 3 3 88 3 3 99999 111 1111111 55 666 44 3 6 3 44 3 3 1
lowQualScore : . .. . . . . . . ...... . . . . ............................ ..... .. . ...... ..... . .. . . . . . . .. . .. ... . . . . . ..... .... ............ ... . ... .................... . ............................................. . ........ . .. .. ... . ..................... . . . . ............. ..................... . ... . .. . . ....... . .. . ...................... .. .. . .. ..... ...... . . . .. . . ..... ... ....... .. ... .. . . . .. . . .
lowQualScore : 3 66 6 3 1 1 3 3 000000 2 8 0 7 8888888888888888888888888888 99999 55 2 555555 00000 0 00 3 0 6 6 6 6 00 6 00 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 77777777777777777777 4 333333333333333333333333333333333333333333333 3 77777777 3 99 66 000 4 333333333333333333333 5 3 0 0 8888888888888 333333333333333333333 7 999 3 66 3 3 0000000 3 99 6 6666666666666666666666 44 00 3 66 11111 777777 3 6 6 66 6 6 11111 444 8888888 00 444 66 3 7 3 66 3 3 3
consensus : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTC-ACT-CAATAAACAAAT-AACAATAGGAAAGATTAA--G-CCCCGCCCAGAA-GATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCGTTT------ACATGTAACCAAT-CTGATT--AA--------T-----T-TN--------A--------------AATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-ACGACTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--C-T-----T--T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTT--TC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTC-GCT-NAATAAACAAAT-AACAATAGGAAAGATTAA--G-CCCCGCCCAGAAAGATTAAGNC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCGTTT------GCATGTAACCAAT-CTGATT--AA--------T-----T-TA--------A--------------AATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-ACGACTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TAA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--C-T-----T--T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTT--TC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGATCAGTTT-TTCGTT-CTTC-ACT-CAATAAGCAAAT-AACAATAGGAAAGATTAA--G-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTGTTT------GCATGTAACCAAT-CTGATT------------T-----T-TAG-------A--------------AATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCGATANGAAAT-ACGACTT-------GTAAATCCCGCTCCTT-TGC-GATCCTC---T---CCGA-TAA--C--------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--C-T-----T--T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTT--TC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACAT-GTGGA--AAAAT-TGT-CG-TTCCAGATGAAAGGTTT-GGCGTT-CTTC-ACT-CAATAAACAA----------GGAACAAT--A--G----------GAAGGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : --------A--------------ATTCCCGC-TCCT--------T-GTGATGATC--CCTTCGATT--AAAC-AC-----------------TCCTGGCACTCTCAC-GA-CCTCCGTT---CCGT-TTA--C--------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCC-T-----T--TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTT--AA-CACGCTG-TTGACATTCATT
gi|11 : AATGAATGTCAA-CAGCGTGTT--AAA-C-TGCCTG-TTC-AGAGGAAAAGTTTCTTCGCT-CTTCGGCTGCAAT-AACAAATAAAAAATAGGAAAGATTAAAGG-CCCCGCCCA-------CAGGCT-TCGCAAAATGCACAT--GACTGA----------GGTCA-----GTAA-ACG--GAAC-GGAGGt
gi|12 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgaACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C-A--TAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : ATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCAATACTCACT-AAAA----------GTAGATCTTA-----C-CGC-G--CCGT---T---CCGT-TTA--C--------TGACCTCAGTCATTGT-CA------TTTGC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaatgtat--------AAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--C-T-----TAAT------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTT--AC-CAC-CTGTTTGAACTTGAT
gi|14 : tctcgccgtatccgctgacctgagcaCTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACAGCA---AACAAATACTGATT------------T-----T-TT--------A--------------AATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CGATA--AA
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C-A--TA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCcactctgctctctactacccgttccgttgact
gi|16 : GC-TG-TTCCAGACGAAAAGTTT-TTCGTT-C----------------AAAT-AACAATAGGAGAGAGTAA--G-CCCCGCC--GA--------------GC-----GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-C-T-----T--G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTT--AC-AAC-CTGTTTGAAATTGATT
gi|18 : -ACGACTT-------GTAAATCCTGCTCCTC-TGT-GATCCGC---C---CCGT-T-------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G-G--C-TTAATCT--T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TA
gi|19 : AATGAATTTCAAACAG-GTGGT--AAAAC-TGC-CG-TTC-AGATGAAAAGTTT-CTCGCT-CTTC-ACT-GAATAAACAAAT-AACAATAGGAAAGATTAA--GTCCCCGCCCA
gi|2 : ATCAATTTCAAACAG-GTGGA--AACACATTC-TGGTTCCAGATGAAAA-TTT-TTCGTT-CTTC-ATC---ATAA-CAA-T-AACA-TAGGAAAGATTAG-----CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CTA--GA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA--------------AT----CGAAT-CTGATT--AAAATAGC--T-----T-GT--------A--------------AATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCGATA--AACT-----CTT---------------TGCTCTCT-CGC-CGTTCCG---T---TTGACTGAGGC--------AGG--T-AGTCATT--CCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--C-TTATC-T--C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTT--TT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTT--TC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTT--TC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATT--TCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : GAAA--CG-GA-AGT-TTTGTTC-CAC-CTGTTTGAAATTGATT
gi|24 : acAATCAATTTCAAACAG-GTGGAACAAAAC-TTC-CG-T---------------------TT-CTTC-ACT-CAATAAACAttcactcaataaaca
gi|25 : acATTTCAAACAG-GTGGA--AAAGC-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-C
gi|26 : --------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAG-GTGGT--AAAAC-TGC-TG-TTCCAGAg
gi|3 : -GC-A-----A-G--CAT-----T--T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-GAGT-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA------C-AGT-TTT--TC-CAC-CTGTTTGAAATGGATTg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C-A--GA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTA--------------------AATCAAT-CTGATT--AAAATACGACT-----T-GT--------A--------------AATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCGTT----AAC-ACT-CTT---------------TGCTCTCT-CGCTGA------------CTGA-GCA-----------AGA--CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GCGG-----G-G--C-TTAATCT--T------TC-----CTA-TTG--TT-AT-TTT-----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTT--CC-CAC-CTGTTTGAAATTCATTgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA-TA-----------------------CATGTAACCAAT-CTGATT------------T-----T-CA--------A--------------AATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCGATA--A
gi|4 : agaAAATCCCGCTCCTC-TGT-GATCCTC---T---CCGA-TAA--C--------A-----C--TC-TTTT--GTTCTCCTTTcactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|4 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaATTCCAAACAG-GTGGA--AAA-C-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-CTTT-ACC-CAATAAACAAAT-AACAATAGGAAACATTAA--G-TCCCGCACAaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcatTTCCAAACAG-GTGGG--AAATC-T-C-TG-TTCCAGATGAAAAGTTT-TTGGTTTCTTC-ACT-----AAATAAAT------T--GAAATATT----------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--C-AAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCATTT------ACATGTAATCAAT-CTGATT--AAAATATGACT-----TGTACGT-----A--------------AATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCGATA--A
gi|6 : atAATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-ATCGTT-CTTC-CCT-AAATAAACCAAT-AACAATAGGAATT-TTAA---------------AAGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC-A--GA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA--------------------AATCAAT-CTGATTGAAA--------TATGACT-TGT-------A--------------AATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCGATA--Acactttttactctctcgcag
gi|7 : ATTNNNNNNNN-NNNNN--NNNAC-TGC-TG-TTCCAGATGAAAAGTGT-TTCGTT-CC----------------AAT-AACAATAGGAAAGACTAA--G---------------------TC-CCGCCCAATGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCGTTT------AAATATAACCAAT-CTGATT--AA--------A-----T-TACGACTTGTG--------------AAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCGATA--Acactttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|7 : TCTGATT--AAATTACGACTT-------GTGAATC--GCTCCTT-AGC-GTTCCTC---T---CCGA-TAA--CACTCTTTGAGG--CCAGTC-TTTTCCCTT----TTTGC-CGG---G-CGGG-GC-GA----A-G--C-T-----T--T------TC-----cactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|8 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaa--GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCGTTT------ACATGTAACCAAT-CTGATT------------T-----T-TA--------AAAATACGACTTGTGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCGAT----AAC-AC-CCTT---------------TGCTCTCT-CGC-AGTTCTG---TTGACTGA-GCA-----------AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--C-T-----T--
gi|9 : --AA--------C-----T-TG--------T--------------AATCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCGTTA--AAGT-ACTCCTTTGCTACAGTGTATCTCG-----C-CGA-G---------T---TCGT-TGA--C--------TG----TAG-CAATACCAAGTCTC---TGC-AAGC--G-CTGGAGC-GCCACAG-G--C-C-----T--T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTT--TC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888 111111 11111 111111111111 3333333333333333 0000000000000000000000000000000000000 444444444444444444444 1111111111111 2222222222222222 11111 11 3333333333333333333333333 11111111111111 11111 111 1111111
lowQualScore : 3 44 1 3 2 2 3 3 3 55 1 8 3 999999999999999999999999999999999999999 55 3 111111 00000 4 55 3 1 3 3 3 3 55 3 55 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 1 3333333333333333 4 1111111111111111111111111111111111111 3 99999999 3 77 44 88 1 4 333333333333333333333 2 0 4 4 7777777777777 6666 3333333333333333 4 444 3 44 3 3 7 22222 3 22 5555555555555555555555555 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : . .. . . . . . . . .. . . . ....................................... .. . ...... ..... . .. . . . . . . .. . .. ... . . . . . ..... .... ............ ... . ... . ................ . ..................................... . ........ . .. .. .. . . ..................... . . . . ............. .... ................ . ... . .. . . . ..... . .. ......................... .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 1 22 7 1 9 9 1 1 3 88 1 5 6 000000000000000000000000000000000000000 55 2 555555 00000 0 00 3 0 6 6 6 6 00 6 00 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 3 2222222222222222 4 0000000000000000000000000000000000000 3 77777777 3 99 66 55 9 4 333333333333333333333 5 3 0 0 8888888888888 1111 8888888888888888 7 999 3 66 3 6 3 77777 6 33 6666666666666666666666666 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA-AA-G-ATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT------A-------AA-TA----T-----TN-----TAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-ACGACTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCAGAA-G-ATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT------A-------A--------T-----TT-----NAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-ACGACTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGATCAGTTT-TTCGTT-CTTCA-CT-CAATAAGCAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCNAGAAAG-ATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT-----------------------T-----TTA----GAAATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCGATANGAAAT-ACGACTT-------GTAAATCCCGCTCCTT-TGC-GATCCTC---T---CCGA-TAA--C--------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT-----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACAT-GTGGA--AAAAT-TGT-CG-TTCCAGATGAAAGGTTT-GGCGTT-CTTCA-CT-CAATAA-------ACAA---GGAACAAT--A--G----------GAA-GGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------T-GTGATGATC--CCTTCGATT--AAAC-AC-----------------TCCTGGCACTCTCAC-GA-CCTCCGTT---CCGT-TTA--C--------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT-----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|11 : AATGAATGTCAA-CAGCGTGTT--AAA-C-TGCCTG-TTC-AGAGGAAAAGTTTCTTCGCT-CTTCGGCTGCAATAA-CAAATAAAAAATAGGAAAGATTAAAGG-CCCCGCCCA--------CAGGCT-TCGCAAAATGCACAT--GACTGA----------GGTCA-----GTAA-ACG--GAAC-GGAGGt
gi|12 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgaACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C-A--TAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : ATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCAATACTCACT-AAAA----------GTAGATCTTA-----C-CGC-G--CCGT---T---CCGT-TTA--C--------TGACCTCAGTCATTGT-CA------TTTGC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaatgtat--------AAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT-----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : tctcgccgtatccgctgacctgagcaCTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT-----------------------T-----TT-----TAAATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CGATA--AA
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C-A--TA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCcactctgctctctactacccgttccgttgact
gi|16 : GC-TG-TTCCAGACGAAAAGTTT-TTCGTT-C----------------AAATAACAA-TAGGAGAGAGTAA--G-CCCCGCC-----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT-----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : -ACGACTT-------GTAAATCCTGCTCCTC-TGT-GATCCGC---C---CCGT-T-------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G-G--CTTAATCT-----T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TA
gi|19 : AATGAATTTCAAACAG-GTGGT--AAAAC-TGC-CG-TTC-AGATGAAAAGTTT-CTCGCT-CTTCA-CT-GAATAAACAAATAACAA-TAGGAAAGATTAA--GTCCCCGCCCA
gi|2 : ATCAATTTCAAACAG-GTGGA--AACACATTC-TGGTTCCAGATGAAAA-TTT-TTCGTT-CTTCA--T-CA-TAA-CAA-TAACA--TAGGAAAGATTAG-----CCCGCCC-----T-ATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CTA--GA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT------A-------AAATAGC--T-----TG-----TAAATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCGATA--AACT-----CTT---------------TGCTCTCT-CGC-CGTTCCG---T---TTGACTGAGGC--------AGG--T-AGTCATT--CCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATC-T-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAG-GTGGAACAAAAC-TTC-CG-T---------------------TT-CTTCA-CT-CAATAAACA
gi|25 : acATTTCAAACAG-GTGGA--AAAGC-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-C
gi|26 : --------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAG-GTGGT--AAAAC-TGC-TG-TTCCAGAg
gi|3 : AATCCATTTCAAACAG-GTGGA--AAAAC-TG-----TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C-A--GA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT------A-------AAATACGACT-----TG-----TAAATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCGTTA--A-----C-ACTC-------TT------TGCTCTCT-CGCTGA------------CTGA-GCA-----------AGA--CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT-----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT-----------------------T-----TC-----AAAATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCGATA--A
gi|4 : agaAAATCCCGCTCCTC-TGT-GATCCTC---T---CCGA-TAA--C--------A-----C--TC-TTTT--GTTCTCCTTTcactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|4 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaATTCCAAACAG-GTGGA--AAA-C-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-CTTTA-CC-CAATAAACAAATAACAA-TAGGAAACATTAA--G-TCCCGCACAaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcatTTCCAAACAG-GTGGG--AAATC-T-C-TG-TTCCAGATGAAAAGTTT-TTGGTTTCTTCA-CT-----AAATAAAT------T--GAAATATT-----------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--C-AAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATT------AAAATATGA--------C-----TTGTACGTAAATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCGATA--A
gi|6 : atAATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-ATCGTT-CTTCC-CT-AAATAAACCAATAACAA-TAGGAA---TT------------TTAAAA-G-ATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC-A--GA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATT------G-------AAATATGACT-----TG-----TAAATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCGATA--Acactttttactctctcgcag
gi|7 : ATTNNNNNNNN-NNNNN--NNNAC-TGC-TG-TTCCAGATGAAAAGTGT-TTCGTT-CC----------------AATAACAA-TAGGAAAGACTAA--G-TCCCGCCCA----------------------ATGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT------A-------AATTACGACT-----TG-----TGAAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCGATA--Acactttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|7 : TCTGATT--AAATTACGACTT-------GTGAATC--GCTCCTT-AGC-GTTCCTC---T---CCGA-TAA--CACTCTTTGAGG--CCAGTC-TTTTCCCTT----TTTGC-CGG---G-CGGG-GC-GA----A-G--CT-----T-----T------TC-----cactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|8 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaa--GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA-------A--------TACGACTTG----TGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCGAT----AAC-AC-CCTT---------------TGCTCTCT-CGC-AGTTCTG---TTGACTGA-GCA-----------AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT-----T-----
gi|9 : ------A-------A--------C-----TT-----GTAATCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCGTTA--AAGT-ACTCCTTTGCTACAGTGTATCTCG-----C-CGA-G---------T---TCGT-TGA--C--------TG----TAG-CAATACCAAGTCTC---TGC-AAGC--G-CTGGAGC-GCCACAG-G--CC-----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 777777777777777777777777777777777777 111111 11111 111111111111 3333333333333333 777777777777777777777777 33333333333333333333333 1111111111111 2222222222222222 11111 11 3333333333333333333333333 11111111111111 11111 111 1111111
lowQualScore : 3 44 1 3 2 2 3 3 3 55 1 4 3 999999999999999999999999999999999999 55 3 111111 00000 4 55 3 1 3 3 3 88 3 55 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 1 3333333333333333 4 333333333333333333333333 1 3 99999999 3 77 44 88 0 4 88888888888888888888888 1 3 3 4444444444444 6666 3333333333333333 4 444 3 44 3 3 7 22222 3 22 5555555555555555555555555 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : . .. . . . . . . . .. . . . .................................... .. . ...... ..... . .. . . . . . .. . .. ... . . . . . ..... .... ............ ... . ... . ................ . ........................ . . ........ . .. .. .. . . ....................... . . . ............. .... ................ . ... . .. . . . ..... . .. ......................... .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 1 22 7 1 9 9 1 1 3 88 1 4 6 333333333333333333333333333333333333 55 2 555555 00000 0 00 3 0 6 6 6 66 6 00 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 3 2222222222222222 4 777777777777777777777777 0 3 77777777 3 99 66 55 7 0 00000000000000000000000 4 6 6 6666666666666 1111 8888888888888888 7 999 3 66 3 6 3 77777 6 33 6666666666666666666666666 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AAA-TA-G-CT--------TGTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-ACGA--CTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AAA-TA----T--------TNTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-ACGA--CTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGATCAGTTT-TTCGTT-CTTCA-CT-CAATAAGCAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT---------T-----T--------TAGAAATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCGATANGAAAT-ACGA--CTT-------GTAAATCCCGCTCCTT-TGC-GATCCTC---T---CCGA-TAA--C--------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT-----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACAT-GTGGA--AAAAT-TGT-CG-TTCCAGATGAAAGGTTT-GGCGTT-CTTCA-CT-CAATAAACA----------AGGAACAAT-AG--G---------A--AGGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------T-GTGATGATC--CCTTCGATT--AAAC-AC-------------------TCCTGGCACTCTCAC-GA-CCTCCGTT---CCGT-TTA--C--------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT-----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|11 : AATGAATGTCAA-CAGCGTGTT--AAA-C-TGCCTG-TTC-AGAGGAAAAGTTTCTTCGCT-CTTCGGCTGCAATAA-CAAATAAAAAATAGGAAAGATTAAAGG-CCCCGCCCA--CAG-----GCT-TCGCAAAATGCACAT--GACTGA----------GGTCA-----GTAA-ACG--GAAC-GGAGGt
gi|12 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgaACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG--TGCC-A--TAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : -----AAA-AA----A--------TGTATATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCAATACTCACT-AAAA------------GTAGATCTTA-----C-CGC-G--CCGT---T---CCGT-TTA--C--------TGACCTCAGTCATTGT-CA------TTTGC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattca--------AAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT-----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : tctcgccgtatccgctgacctgagcaCTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT---------------T--------TTTAAATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CGATA--AA
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA--GGCC-A--TA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCcactctgctctctactacccgttccgttgact
gi|16 : GC-TG-TTCCAGACGAAAAGTTT-TTCGTT-C----------------AAATAACAA-TAGGAGAGAGTAA--G-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT-----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : -ACGA--CTT-------GTAAATCCTGCTCCTC-TGT-GATCCGC---C---CCGT-T-------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G-G--CTTAATCT-----T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TA
gi|19 : AATGAATTTCAAACAG-GTGGT--AAAAC-TGC-CG-TTC-AGATGAAAAGTTT-CTCGCT-CTTCA-CT-GAATAAACAAATAACAA-TAGGAAAGATTAA--GTCCCCGCCCA--
gi|2 : ATCAATTTCAAACAG-GTGGA--AACACATTC-TGGTTCCAGATGAAAA-TTT-TTCGTT-CTTCA--T-CA-TAA-CAA-TAACA--TAGGAAAGATTAG-----CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAA-CGCCTA--GA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT-----AAAATAGC--T--------TGTAAATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCGATA--AACT-------CTT---------------TGCTCTCT-CGC-CGTTCCG---T---TTGACTGAGGC--------AGG--T-AGTCATT--CCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATC-T-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAG-GTGGAACAAAAC-TTC-CG-T---------------------TT-CTTCA-CT-CAATAAACA
gi|25 : acATTTCAAACAG-GTGGA--AAAGC-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-C
gi|26 : --------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAG-GTGGT--AAAAC-TGC-TG-TTCCAGAg
gi|3 : AATCCATTTCAAACAG-GTGGA--AAAAC-TG-----TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA--CACC-A--GA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT-----AAAATACGACT--------TGTAAATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCGTTA--A-----C-A--CTC-------TT------TGCTCTCT-CGCTGA------------CTGA-GCA-----------AGA--CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT-----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------T--------TCAAAATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCGATA--A
gi|4 : agaAAATCCCGCTCCTC-TGT-GATCCTC---T---CCGA-TAA--C--------A-----C--TC-TTTT--GTTCTCCTTTcactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|4 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaATTCCAAACAG-GTGGA--AAA-C-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-CTTTA-CC-CAATAAACAAATAACAA-TAGGAAACATTAA--G-TCCCGCACA--Aaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAG-GTGGG--AAATC-T-C-TG-TTCCAGATGAAAAGTTT-TTGGTTTCTTCA-CT-----AAATAAAT------T--GAAATATT----------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA--TGCC-AAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATTA----AAA-TA----TGACTTGTACGTAAATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCGATA--A
gi|6 : atAATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-ATCGTT-CTTCC-CT-AAATAAACCAATAACAA-TAGGAATT-TTAA---------------AAGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCACGCGCC-A--GA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATTG----AAA-TATGACT--------TGTAAATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCGATA--Acactttttactctctcgcag
gi|7 : ATTNNNNNNNN-NNNNN--NNNAC-TGC-TG-TTCCAGATGAAAAGTGT-TTCGTT-CC----------------AATAACAA-TAGGAAAGACTAA--G-TCCCGCCCA--A-------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC--CGCG-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AAATTACGACT--------TGTGAAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCGATA--Acactttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|7 : TCTGATT--AAATTACGA--CTT-------GTGAATC--GCTCCTT-AGC-GTTCCTC---T---CCGA-TAA--CACTCTTTGAGG--CCAGTC-TTTTCCCTT----TTTGC-CGG---G-CGGG-GC-GA----A-G--CT-----T-----T------TC-----cactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|8 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaa--GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAAA-TACGACT--------TGTGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCGAT----AAC-AC-C--CTT---------------TGCTCTCT-CGC-AGTTCTG---TTGACTGA-GCA-----------AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT-----T-----
gi|9 : AT-ACGAAACTT-------GTAA-TCTCGCTCCTC-TGC-GATCCTC-------CCGaatctctccta
gi|9 : ac----T--------TGTAA-TCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCGTTA--AAGT-ACTC--CTTTGCTACAGTGTATCTCG-----C-CGA-G---------T---TCGT-TGA--C--------TG----TAG-CAATACCAAGTCTC---TGC-AAGC--G-CTGGAGC-GCCACAG-G--CC-----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTttaaagtactcctttgctacagtgtatctcgccgagttcgttgactgtagcaataccaagtctctgcaagcgctggagcgccacaggccttaattttcggtttatttaagccgctcagggacttgcgaagagcgtaaaaagcacgtattaaatcaatcgggaactcagcaagtcttttctaccttaccgaaatcgatttgaaagtcagttg
Alignments
lowQualScore : 777777777777777777777777777777777777 111111 11111 111111111111 3333333333333333 66666666666666666666 11111111 666666666666666666666666666666666666666666666666666666666666666666 111 11111 11 3333333333333333333333333 11111111111111 11111 111 1111111
lowQualScore : 3 44 1 3 2 2 3 3 3 55 1 4 3 999999999999999999999999999999999999 55 3 111111 00000 4 55 3 1 3 3 3 3 55 3 55 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 1 3333333333333333 4 88888888888888888888 7777 3 33333333 77 44 88 1 4 333333333333333333333333333333333333333333333333333333333333333333 000 1 6666 3 44 3 3 7 22222 3 22 5555555555555555555555555 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : . .. . . . . . . . .. . . . .................................... .. . ...... ..... . .. . . . . . . .. . .. ... . . . . . ..... .... ............ ... . ... . ................ . .................... .... . ........ .. .. .. . . .................................................................. ... . .... . .. . . . ..... . .. ......................... .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 1 22 7 1 9 9 1 1 3 88 1 4 6 333333333333333333333333333333333333 55 2 555555 00000 0 00 3 0 6 6 6 6 00 6 00 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 3 2222222222222222 4 44444444444444444444 7777 3 11111111 99 66 55 9 4 111111111111111111111111111111111111111111111111111111111111111111 444 8 8888 3 66 3 6 3 77777 6 33 6666666666666666666666666 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CC--TCTCCGATA--AAAT-ACGACTT-------GTA-ATCCTGCTCCCC-CGC-GATCCTC---T---CCGN-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--GCTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CC--TCTCCGATA--AAAT-ACGACTT-------GTAAATCCCGCTCCTC-CGC-GATCCTC---T---CCGA-TNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGATCAGTTT-TTCGTT-CTTCA-CT-CAATAAGCAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT--------------------TTT----AGAAATCCCGC-TCCT-----T--TGCGAT--CC--TCTCCGATANGAAAT-ACGACTT-------GTAAATCCCGCTCCTT-TGC-GATCCTC---T---CCGA-TAA--C--------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT-----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACAT-GTGGA--AAAAT-TGT-CG-TTCCAGATGAAAGGTTT-GGCGTT-CTTCA-CT-CAATAAACA----------AGGAACAAT-AG--G---------A--AGGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------TGTGATGATC--CCTTCGATT--AAAC-AC-----------------TCCTGGCACTCTCAC-GA-CCTCCGTT---CCGT-TTA--C--------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT-----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|11 : AATGAATGTCAA-CAGCGTGTT--AAA-C-TGCCTG-TTC-AGAGGAAAAGTTTCTTCGCT-CTTCGGCTGCAATAA-CAAATAAAAAATAGGAAAGATTAAAGG-CCCCGCCCA--CAG-----GCT-TCGCAAAATGCACAT--GACTGA----------GGTCA-----GTAA-ACG--GAAC-GGAGGt
gi|12 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgaACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C-A--TAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : T----GTATATTCCGC-TCCT-----CT-TATGAT--CC--TCTCCAATACTCACT-AAAA----------GTAGATCTTA-----C-CGC-G--CCGT---T---CCGT-TTA--C--------TGACCTCAGTCATTGT-CA------TTTGC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaa--------AAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT-----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : tctcgccgtatccgctgacctgagcaCTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT---------------------TT----TTAAATCCCGCATCCT-----CAATGTGAT--CC--TCT-CGATA--AA
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C-A--TA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCcactctgctctctactacccgttccgttgact
gi|16 : GC-TG-TTCCAGACGAAAAGTTT-TTCGTT-C----------------AAATAACAA-TAGGAGAGAGTAA--G-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT-----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : -ACGACTT-------GTAAATCCTGCTCCTC-TGT-GATCCGC---C---CCGT-T-------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G-G--CTTAATCT-----T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TA
gi|19 : AATGAATTTCAAACAG-GTGGT--AAAAC-TGC-CG-TTC-AGATGAAAAGTTT-CTCGCT-CTTCA-CT-GAATAAACAAATAACAA-TAGGAAAGATTAA--GTCCCCGCCCA--
gi|2 : ATCAATTTCAAACAG-GTGGA--AACACATTC-TGGTTCCAGATGAAAA-TTT-TTCGTT-CTTCA--T-CA-TAA-CAA-TAACA--TAGGAAAGATTAG-----CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CTA--GA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT-----AA---AAT---A--GCTT----GTAAATCCCGC-TTCTAAGGAC--TAT-ATG-CCGATCTCCGATA--AACT-----CTT---------------TGCTCTCT-CGC-CGTTCCG---T---TTGACTGAGGC--------AGG--T-AGTCATT--CCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATC-T-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAG-GTGGAACAAAAC-TTC-CG-T---------------------TT-CTTCA-CT-CAATAAACA
gi|25 : acATTTCAAACAG-GTGGA--AAAGC-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-C
gi|26 : --------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAG-GTGGT--AAAAC-TGC-TG-TTCCAGAg
gi|3 : AATCCATTTCAAACAG-GTGGA--AAAAC-TG-----TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C-A--GA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT-----AA---AAT---ACGACTT----GTAAATCCCAC-TCCT-----C--TGCGAT--CC--CCTCCGTTA--A-----C-ACTC-------TT------TGCTCTCT-CGCTGA------------CTGA-GCA-----------AGA--CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT-----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------------TT----CAAAATCCCGC-TCCT-----C--TGTGAT--CC--TCTCCGATA--A
gi|4 : agaATTCCAAACAG-GTGGA--AAA-C-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-CTTTA-CC-CAATAAACAAATAACAA-TAGGAAACATTAA--G-TCCCGCACA--Acactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAG-GTGGG--AAATC-T-C-TG-TTCCAGATGAAAAGTTT-TTGGTTTCTTCA-CT-----AAATAAAT------T--GAAATATT----------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--C-AAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATT-----AAAATA-T---G--ACTTGTACGTAAATCCTGC-TCTT-----C--TGCAAT--CC--TCTCCGATA--A
gi|6 : atAATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-ATCGTT-CTTCC-CT-AAATAAACCAATAACAA-TAGGAATT-TTAA---------------AAGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC-A--GA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATTG----AA---A-T---ATGACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CT--CCTCCGATA--Acactttttactctctcgcag
gi|7 : ATTNNNNNNNN-NNNNN--NNNAC-TGC-TG-TTCCAGATGAAAAGTGT-TTCGTT-CC----------------AATAACAA-TAGGAAAGACTAA--G-TCCCGCCCA--A-------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AA---A-TTACG--ACTT----GTGAAT--CGC-TCCT-----T--AGCGTT--CC--TCTCCGATA--Acactttttgctctctcgccgttccggcgactgagcaaagccagtca
gi|7 : TCTGATT--AAATTACGACTT-------GTGAATC--GCTCCTT-AGC-GTTCCTC---T---CCGA-TAA--CACTCTTTGAGG--CCAGTC-TTTTCCCTT----TTTGC-CGG---G-CGGG-GC-GA----A-G--CT-----T-----T------TC-----cactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|8 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaa--GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA---A-T---ACGACTT----GTGAATCCCGC-TCGT-----C--TGTGAT--CC--TCTCCGAT----AAC-AC-CCTT---------------TGCTCTCT-CGC-AGTTCTG---TTGACTGA-GCA-----------AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT-----T-----
gi|9 : ---A--ACTT----GTAA-TCTCGC-TCCT-----C--TGCGAT--CC--TC-CCGTTA--AAGT-ACTCCTTTGCTACAGTGTATCTCG-----C-CGA-G---------T---TCGT-TGA--C--------TG----TAG-CAATACCAAGTCTC---TGC-AAGC--G-CTGGAGC-GCCACAG-G--CC-----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 777777777777777777777777777777777777 111111 11111 111111111111 3333333333333333 6666666666666666666 11111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 11 3333333333333333333333333 11111111111111 11111 111 1111111
lowQualScore : 3 44 1 3 2 2 3 3 3 55 1 4 3 999999999999999999999999999999999999 55 3 111111 00000 4 55 3 1 3 3 3 3 55 3 55 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 1 3333333333333333 4 1111111111111111111 7777 3 33333333 77 44 1111111111111111111111111111111111111111111111111111111111111111111111111111111 4 444 3 44 3 3 7 22222 3 22 5555555555555555555555555 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : . .. . . . . . . . .. . . . .................................... .. . ...... ..... . .. . . . . . . .. . .. ... . . . . . ..... .... ............ ... . ... . ................ . ................... .... . ........ .. .. ............................................................................... . ... . .. . . . ..... . .. ......................... .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 1 22 7 1 9 9 1 1 3 88 1 4 6 333333333333333333333333333333333333 55 2 555555 00000 0 00 3 0 6 6 6 6 00 6 00 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 3 2222222222222222 4 3333333333333333333 7777 3 11111111 99 66 1111111111111111111111111111111111111111111111111111111111111111111111111111111 7 999 3 66 3 6 3 77777 6 33 6666666666666666666666666 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACAT---TAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CC--TCTCCGATA--AAAT-AC-ACTTGT-A-A-TCCTG-C------TCCC-TCG-C-GATCCNC---TCCGNTGA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACAT---TAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CC--TCTCCGATA--AAAT-ACGACTTGT-A-A-TCCTG-C------TCCC-CCG-C-GATCCTC---TCCGNTNA--C--------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGATCAGTTT-TTCGTT-CTTCA-CT-CAATAAGCAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACAT---TAAAGTG-TT--TGCATGT-AACCAAT-CTGATT--------------------TTT----AGAAATCCCGC-TCCT-----T--TGCGAT--CC--TCTCCGATANGAAAT-ACGACTTGTAA-A-TCCCG-C------TCCT-TTG-C-GATCCTC---TCCGATAA--C--------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT-----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACAT-GTGGA--AAAAT-TGT-CG-TTCCAGATGAAAGGTTT-GGCGTT-CTTCA-CT-CAATAAACA----------AGGAACAAT-AG--G---------A--AGGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACAT---
gi|11 : AATTCCCGC-TCCT--------TGTGATGATC--CCTTCGATT--AAAC-AC------------TCCTGGC------ACTC-TCA-C-GA-CCTCCGTTCCGTTTA--C--------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT-----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|11 : AATGAATGTCAA-CAGCGTGTT--AAA-C-TGCCTG-TTC-AGAGGAAAAGTTTCTTCGCT-CTTCGGCTGCAATAA-CAAATAAAAAATAGGAAAGATTAAAGG-CCCCGCCCA--CAG-----GCT-TCGCAAAATGCACAT--GACTGA----------GGTCA-----GTAA-ACG--GAAC-GGAGGt
gi|12 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgaACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C-A--TAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCAC---TAAAt
gi|12 : T----GTATATTCCGC-TCCT-----CT-TATGAT--CC--TCTCCAATACTCACT-AAAA---GT-AGA-TCTTA-------------CCG-C-G--CCGT---TCCGTTTA--C--------TGACCTCAGTCATTGT-CA------TTTGC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaa---TCCGCTGA--CCTGAGCA-AAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT-----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : tctcgccgtaCTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACAT---TAGAGCGATTAATACA-GCAAACAAATACTGATT---------------------TT----TTAAATCCCGCATCCT-----CAATGTGAT--CC--TCT-CGATA--A----AC-ACT----------CTG-C------T-CT-CTA-C-TACCCGT---TCCGTTGA--C--------
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C-A--TA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCt
gi|16 : GC-TG-TTCCAGACGAAAAGTTT-TTCGTT-C----------------AAATAACAA-TAGGAGAGAGTAA--G-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT-----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : -ACGACTTGT-A-AATCCTG-C------TCCT-CTG-T-GATCCGC---CCCGTT-------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G-G--CTTAATCT-----T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TA
gi|19 : AATGAATTTCAAACAG-GTGGT--AAAAC-TGC-CG-TTC-AGATGAAAAGTTT-CTCGCT-CTTCA-CT-GAATAAACAAATAACAA-TAGGAAAGATTAA--GTCCCCGCCCA--
gi|2 : ATCAATTTCAAACAG-GTGGA--AACACATTC-TGGTTCCAGATGAAAA-TTT-TTCGTT-CTTCA--T-CA-TAA-CAA-TAACA--TAGGAAAGATTAG-----CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CTA--GA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCAT---TAGA-----------AT-----CGAAT-CTGATT-----AA---AAT---A--GCTT----GTAAATCCCGC-TTCTAAGGAC--TAT-ATG-CCGATCTCCGATA--AACT-----CTT----------TG-C------TCTC-TCGCC-GTTCCGT---TTGACTGAGGC--------AGG--T-AGTCA--TTCCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATC-T-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAG-GTGGAACAAAAC-TTC-CG-T---------------------TT-CTTCA-CT-CAATAAACA
gi|25 : acATTTCAAACAG-GTGGA--AAAGC-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-C
gi|26 : --------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAG-GTGGT--AAAAC-TGC-TG-TTCCAGAg
gi|3 : AATCCATTTCAAACAG-GTGGA--AAAAC-TG-----TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C-A--GA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACAT---TAAA------------------TCAAT-CTGATT-----AA---AAT---ACGACTT----GTAAATCCCAC-TCCT-----C--TGCGAT--CC--CCTCCGTTA--A-----C-ACTCTT--------TG-C------TCTC-TCG-CTGA---------CTGAGCA-----------AGA--CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT-----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------------TT----CAAAATCCCGC-TCCT-----C--TGTGAT--CC--TCTCCGATA--A
gi|4 : aga-A-A-TCCCG-C------TCCT-CTG-T-GATCCTC---TCCGATAA--C--------A-----C--TC-TTTT--GTTCTCCTTTcactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|4 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaATTCCAAACAG-GTGGA--AAA-C-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-CTTTA-CC-CAATAAACAAATAACAA-TAGGAAACATTAA--G-TCCCGCACA--Aaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAG-GTGGG--AAATC-T-C-TG-TTCCAGATGAAAAGTTT-TTGGTTTCTTCA-CT-----AAATAAAT------T--GAAATATT----------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--C-AAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACAT---TAAAGCA-TT--TACATGT-AATCAAT-CTGATT-----AAAATA-T---G--ACTTGTACGTAAATCCTGC-TCTT-----C--TGCAAT--CC--TCTCCGATA--A
gi|6 : atAATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-ATCGTT-CTTCC-CT-AAATAAACCAATAACAA-TAGGAATT-TTAA---------------AAGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC-A--GA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACAT---TA------------------AATCAAT-CTGATTG----AA---A-T---ATGACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CT--CCTCCGATA-------AC-ACTTTT--------TG-C------TCTC-TCG------CCGT---TCCGGCGA--CTGAGCA--AAG--CCAGTCAcactttttactctctcgcag
gi|7 : ATTNNNNNNNN-NNNNN--NNNAC-TGC-TG-TTCCAGATGAAAAGTGT-TTCGTT-CC----------------AATAACAA-TAGGAAAGACTAA--G-TCCCGCCCA--A-------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACAT---TAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AA---A-TTACG--ACTT----GTGAAT--CGC-TCCT-----T--AGCGTT--CC--TCTCCGATA--A
gi|7 : TCTGATT--AAATTACGACTTGTGA-A-TC--G-C------TCCT-TAG-C-GTTCCTC---TCCGATAA--CACTCTTTGAGG--CCAGTC-TTTTCCCTT----TTTGC-CGG---G-CGGG-GC-GA----A-G--CT-----T-----T------TC-----cactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|8 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaa--GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA---A-T---ACGACTT----GTGAATCCCGC-TCGT-----C--TGTGAT--CC--TCTCCGATA--ACAC--C--CTT----------TG-C------TCTC-TCG-C-AGTTCT-------GTTGA--CTGAGCA--AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT-----T-----
gi|9 : ---A--ACTT----GTAA-TCTCGC-TCCT-----C--TGCGAT--CC--TC-CCGTTA--AAGT-ACTCCTT-------TGCTA-CAGTGTATCTCGCCG-A-G---------TTCGTTGA--C--------TG----TAG-CAATACCAAGTCTC---TGC-AAGC--G-CTGGAGC-GCCACAG-G--CC-----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 777777777777777777777777777777777777 111111 11111 111111111111 3333333333333333 6666666666666666666 77777777777777777777777777777 1111111111 44444444444444444444 111111111 3333333333333333333333333 11111111111111 11111 111 1111111
lowQualScore : 3 44 1 3 2 2 3 3 3 55 1 4 3 999999999999999999999999999999999999 55 3 111111 00000 4 55 3 1 3 3 3 88 3 55 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 1 3333333333333333 4 1111111111111111111 7777 3 99999999 3 77 44 66666666666666666666666666666 3 2 3 9999999999 1 1 77 11111111111111111111 2 666 0 3 44 3 3 7 99999 666666666 5555555555555555555555555 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : . .. . . . . . . . .. . . . .................................... .. . ...... ..... . .. . . . . . .. . .. ... . . . . . ..... .... ............ ... . ... . ................ . ................... .... . ........ . .. .. ............................. . . . .......... . . .. .................... . ... . . .. . . . ..... ......... ......................... .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 1 22 7 1 9 9 1 1 3 88 1 4 6 333333333333333333333333333333333333 55 2 555555 00000 0 00 3 0 6 6 6 66 6 00 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 3 2222222222222222 4 3333333333333333333 7777 3 77777777 3 99 66 44444444444444444444444444444 3 8 3 4444444444 0 0 99 99999999999999999999 5 666 4 3 66 3 6 3 11111 444444444 6666666666666666666666666 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAC-AC-ACTT---GT-----TCC--TG-CTCTCTCG-C-GA--TCCGTTCCGTTGA--C-------A--------GG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G------G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAT-AC-ACTT---GT-A-A-TCC--TG-CTCCCTCG-C-GA--TCCNCTCCGNTGA--C-------A--------GG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G------G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGATCAGTTT-TTCGTT-CTTCA-CT-CAATAAGCAAATAACAA-TAGGAAAGATTAA--G-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT--------------------TTT----AGAAATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCGATANGAAAT-ACGACTT---GTAA-A-TCC--CG-CTCCTTTG-C-GA--TCCTCTCCGATAA--C-------A--------GG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G------G--CT-----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACAT-GTGGA--AAAAT-TGT-CG-TTCCAGATGAAAGGTTT-GGCGTT-CTTCA-CT-CAATAAACA----------AGGAACAAT-AG--G---------A--AGGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------T-GTGATGATC--CCTTCGATT--AAAC-AC---------------TCC--TGGCACTCTCA-C-GACCTCCGTTCCGTTTA--C-------T--------GACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G------GGCCT-----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|11 : AATGAATGTCAA-CAGCGTGTT--AAA-C-TGCCTG-TTC-AGAGGAAAAGTTTCTTCGCT-CTTCGGCTGCAATAA-CAAATAAAAAATAGGAAAGATTAAAGG-CCCCGCCCA--CAG-----GCT-TCGCAAAATGCACAT--GACTGA----------GGTCA-----GTAA-ACG--GAAC-GGAGGt
gi|12 : aattcccgctccttgtgatgatcccttcgattaaacactcctggcactctcacgaACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG--TGCC-A--TAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : T----GTATATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCAATA-----C-TC-ACTAAAAGT-AGA-TCT--TA-C-----CG-C-G----CCGTTCCGTTTA--C-------T--------GACCTCAGTCATTGTC-ATTT------GC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaaTCCGCTGA--CCTGAGCAA--------AG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G------G--CT-----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : tctcgccgtaCTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT---------------------TT----TTAAATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CGATA--A----AC-ACT-------------C--TG-CTCTCT-A-C-TA--CCCGTTCCGTTGA--C-------
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA--GGCC-A--TA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCt
gi|16 : GC-TG-TTCCAGACGAAAAGTTT-TTCGTT-C----------------AAATAACAA-TAGGAGAGAGTAA--G-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G------GA-CT-----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : -ACTT---GT-A-AATCC--TG-CTCCTCTG-T-GA--TCCGCCCCGTT------------A--------GA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G------G--CTTAATCT-----T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TA
gi|19 : acgAATGAATTTCAAACAG-GTGGT--AAAAC-TGC-CG-TTC-AGATGAAAAGTTT-CTCGCT-CTTCA-CT-GAATAAACAAATAACAA-TAGGAAAGATTAA--GTCCCCGCCCA--
gi|2 : ATCAATTTCAAACAG-GTGGA--AACACATTC-TGGTTCCAGATGAAAA-TTT-TTCGTT-CTTCA--T-CA-TAA-CAA-TAACA--TAGGAAAGATTAG-----CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAA-CGCCTA--GA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT-----AA---AAT---A--GCTT----GTAAATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCGATA--AACT-----CTT---------------TG-CTCTCTCGCC-GT--TCCGTTTGACTGAGGC-------A--------GG--T-AGTCA--TTCCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G------G--CTTATC-T-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAG-GTGGAACAAAAC-TTC-CG-T---------------------TT-CTTCA-CT-CAATAAACA
gi|25 : acATTTCAAACAG-GTGGA--AAAGC-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-C
gi|26 : -------A--------GG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G------G--ga
gi|27 : AACCTATCTCAAACAG-GTGGT--AAAAC-TGC-TG-TTCCAGAg
gi|3 : AATCCATTTCAAACAG-GTGGA--AAAAC-TG-----TTCCAGATGAAAAGTTT-TTCGTT-CTTCA-CT-CAATAAACAAATAACAA-TAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA--CACC-A--GA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT-----AA---AAT---ACGACTT----GTAAATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCGTTA--A-----C-ACTC---TT----------TG-CTCTCTCG-CTGA-----------CTGAG-C-------A--------AGA-CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G------GG-CT-----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------------TT----CAAAATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCGATA--ACAC-TC-TTTT---GT-T-C-TCC--T
gi|4 : agaATTCCAAACAG-GTGGA--AAA-C-TGC-TG-TTTCAGATGAAAAGTTT-TTCGTT-CTTTA-CC-CAATAAACAAATAACAA-TAGGAAACATTAA--G-TCCCGCACA--Attaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAG-GTGGG--AAATC-T-C-TG-TTCCAGATGAAAAGTTT-TTGGTTTCTTCA-CT-----AAATAAAT------T--GAAATATT----------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA--TGCC-AAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATT-----AAAATA-T---G--ACTTGTACGTAAATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCGATA-------AC-ACTT---TT----------TA-CTCTCTCG-C-
gi|6 : atAATCAATTTCAAACAG-GTGGA--AAAAC-TGC-TG-TTCCAGATGAAAAGTTT-ATCGTT-CTTCC-CT-AAATAAACCAATAACAA-TAGGAATT-TTAA---------------AAGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCACGCGCC-A--GA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATTG----AA---A-T---ATGACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCGATA-------AC-ACTT---TT----------TG-CTCTCTCG--------CCGTTCCGGCGA--CTGAGCA-A--------AG--CCAGTCAag
gi|7 : ATTNNNNNNNN-NNNNN--NNNAC-TGC-TG-TTCCAGATGAAAAGTGT-TTCGTT-CC----------------AATAACAA-TAGGAAAGACTAA--G-TCCCGCCCA--A-------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC--CGCG-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AA---A-TTACG--ACTT----GTGAAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCGATA--A
gi|7 : TCTGATT--AAATTACGACTT---GTGA-A-TC----G-CTCCTTAG-C-GT--TCCTCTCCGATAA--C-------ACTCTTTGAGG--CCAGTC-TTTTCCCTTTTT-------------G-CCGG-GC-G-----GGGCGAAG--CT-----T-----T------TC-----cactctttgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|8 : attnnnnnnnnnnnnnnnnactgctgttccagatgaaaagtgtttcgttccaataacaataggaaagactaagtcccgcccaatgcttgctactggacttgtttagtcaacgaatggcgtatgtttgaaagagtagtccaagcgacttcccgcgagatttcgttatcagtgaaaatgcgagagctccagcccccccccccctccttccccattttattttcaaaatacattaaagcgtttaaatataaccaa--GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA--CGCC-A--TA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA---A-T---ACGACTT----GTGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCGAT----AAC-AC-CCTT---------------TG-CTCTCTCG-C-AG--T----TCTGTTGA--CTGAGCA-A--------GG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GC-----G--CT-----T-----
gi|9 : ---A--ACTT----GTAA-TCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCGTTA--AAGT-AC-TCCT---TT-G-C-TACAGTG--TATCTCG-C------CGAGTTCGTTGA--C-------T--------G----TAG-CAATACCAAGT---CTCTGC-AAGC--G-CTGGAGC-GCCACAG------G--CC-----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 8888888888888888888888888888888888 111111 11111 111111111111 3333333333333333 5555555555555555555 11111111 666666666666666666666666666666 222222222 33333333333333333333333 11111 11 4444444444444444444444444 11111111111111 11111 111 1111111
lowQualScore : 44 3 3 3 3 2 1 0 0 5555555555555555555555555555555555 66 222222 11111 666666 3 3 3 3 3 55 3 55 555 3 3 3 3 5 55 2 4444 777777777777 555 3 666 1 3333333333333333 4 9999999999999999999 7777 3 11111111 77 44 444444444444444444444444444444 3 7777 3 999999999 3 77777777777777777777777 2 888 3 55 3 4 8 00000 4 33 4444444444444444444444444 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : .. . . . . . . . . .................................. .. ...... ..... ...... . . . . . .. . .. ... . . . . . .. . .... ............ ... . ... . ................ . ................... .... . ........ .. .. .............................. . .... . ......... . ....................... . ... . .. . . . ..... . .. ......................... .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 66 3 1 3 6 0 2 7 1 2222222222222222222222222222222222 11 888888 11111 444444 6 6 6 6 6 00 6 00 888 3 3 3 3 4 88 8 7777 111111111111 888 6 444 3 2222222222222222 4 8888888888888888888 1111 1 33333333 33 22 777777777777777777777777777777 3 1111 1 888888888 6 88888888888888888888888 8 222 6 00 6 0 0 00000 0 55 2222222222222222222222222 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA--A-GATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CC--TCTCCGATA--AAAC--AC-NCT-----T--T---TCCTG-C----TCTCTC-G-C-GA---CCGT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA--AAGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CC--TCTCCGATA--AAAC--AC-ACT-----T-GT---TCCTG-C----TCTCTC-G-C-GA--TCCGT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT-----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGATCAGTTTTTCGTT-CTTCACTCAATAAGCAAATAACAATAGGAAAGATTAAG-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGGTA-TCAAATTGCA-TAAAAATGCGAGA-GC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT--------------------TTT----AGAAATCCCGC-TCCT-----T--TGCGAT--CC--TCTCCGATANGAAAT--ACGACT-----T-GTAAATCCCG-C----TCCTTT-G-C-GA--TCCTC-TCCGAT-------AA-C-------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT-----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACATGTGGA--AAAAT-TGTCG-TTCCAGATGAAAGGTTTGGCGTT-CTTCACTCAATAAACA---------AGGAACAAT-AGG---------A--AGGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------TGTGATGATC--CCTTCGATT--AAAC--AC----------------TCCTGGC----ACTCTC-A-C-GACCTCCGT-TCCGTT-------TA-C-------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT-----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|12 : ACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C-A--TAGTATTTCGTTC-ACAAATTGCA-TGAAAACGCGAGA-GTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : T----GTATATTCCGC-TCCT-----CT-TATGAT--CC--TCTCCAAT-----AC--TC-ACTAAAAGTAGA---TCTTA-C---------C-G-C-G----CCGT-TCCGTT-------TA-C-------TGACCTCAGTCATTGT-CA------TTTGC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaaTCTC-G-C-------CGTATCCGCT-------GA-CCTGAGCAAAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT-----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : CTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT---------------------TT----TTAAATCCCGCATCCT-----CAATGTGAT--CC--TCT-CGATA--A-----AC-ACT--------------CTG-C----TCTCT--A-C-TA--CCCGT-TCCGTT-------GA-C-------
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C-A--TA---TTTCGTTA-TCGAATTGCA-CGCAAATGAGAGA-GC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCt
gi|16 : GCTG-TTCCAGACGAAAAGTTTTTCGTT-C--------------AAATAACAATAGGAGAGAGTAAG-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT-----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : --ACTT----GTAAATCCTGC-TCCT-----C--TGTGAT--CC--GCCCCGTTA--GATCTAAC-ACT-----T--T---T--TG-C----TCTCTC-G-C-
gi|18 : acg-ACT-----T-GTAAATCCTG-C----TC-CTCTG-T-GA--TCCGC-CCCGTT------------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-ACGG-----G-G--CTTAATCT-----T------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TAtggacggggcttaatctttcttattgttatttattattta
gi|19 : acgAATGAATTTCAAACAGGTGGT--AAAAC-TGCCG-TTC-AGATGAAAAGTTTCTCGCT-CTTCACTGAATAAACAAATAACAATAGGAAAGATTAAGTCCCCGCCCA--
gi|2 : ATCAATTTCAAACAGGTGGA--AACACATTCTGGTTCCAGATGAAAA-TTTTTCGTT-CTTCA-TCA-TAA-CAA-TAACA-TAGGAAAGATTAG---CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CTA--GA---TTTTGTTA-TCAA-TTGCA-TGAAAATGTGAGA-GT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT-----AA---AAT---A--GCTT----GTAAATCCCGC-TTCTAAGGAC--TAT-ATG-CCGATCTCCGATA--A-----AC-TCT-----T---------TG-C----TCTCTC-G--------CCGT-TCCGTTTGACTGAGG-C-------AGG--T-AGTCA--TTCCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATC-T-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGCA-TGAAAACGCGAGA-GT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAGGTGGAACAAAAC-TTCCG-T--------------------TT-CTTCACTCAATAAACA
gi|25 : acATTTCAAACAGGTGGA--AAAGC-TGCTG-TTTCAGATGAAAAGTTTTTCGTT-C
gi|26 : -------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAGGTGGT--AAAAC-TGCTG-TTCCAGAg
gi|3 : AATCCATTTCAAACAGGTGGA--AAAAC-TG----TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C-A--GA---TT-CGTTA-TCAAATTGTA-TGAAAATGTGAGA-GC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT-----AA---AAT---ACGACTT----GTAAATCCCAC-TCCT-----C--TGCGAT--CC--CCTCCGTTA--A--C--AC-TCT-----T---------TG-C----TCTCTC-G-CTGA--C----------T-------GAGC-------AAGA-CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT-----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCC-TGAAAATGCGAGA-GC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------------TT----CAAAATCCCGC-TCCT-----C--TGTGAT--CC--TCTCCGATA--ACAC--TC-TTT-----T-GT---TC
gi|4 : agaATTCCAAACAGGTGGA--AAA-C-TGCTG-TTTCAGATGAAAAGTTTTTCGTT-CTTTACCCAATAAACAAATAACAATAGGAAACATTAAG-TCCCGCACA--Atcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAGGTGGG--AAATC-T-CTG-TTCCAGATGAAAAGTTTTTGGTTTCTTCACT----AAATAAAT-----T--GAAATATT--------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--C-AAATA---TTTTGTTA-AATAATTGCAATGAAA-TGTGAGAAGC-TCCAGGG-GCT-TGTTCCC--GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATT-----AAAATA-T---G--ACTTGTACGTAAATCCTGC-TCTT-----C--TGCAAT--CC--TCTCCGATA--------AC-ACT-----T--T---T--TA-C----TCTCTC-G-C-
gi|6 : atAATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTATCGTT-CTTCCCTAAATAAACCAATAACAATAGGAATT-TTAA-------------AAGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC-A--GA---CTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATTG----AA---A-T---ATGACTT----GTAAATCCCGC-TCCT-----C--TGCGAT--CT--CCTCCGATA--------AC-ACT-----T--T---T--TG-C----TCTCTC-G--------CCGT-TCCGGC-------GA-CTGAGCA-AAG--CCAGTCAag
gi|7 : ATTNNNNNNNNNNNNN--NNNAC-TGCTG-TTCCAGATGAAAAGTGTTTCGTT-CC--------------AATAACAATAGGAAAGACTAAG-TCCCGCCCA--A-------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAGA-GC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AA---A-TTACG--ACTT----GTGAAT--CGC-TCCT-----T--AGCGTT--CC--TCTCCGAT----AAC--AC-TCT-----T-
gi|8 : --GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCAAGA-GC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA---A-T---ACGACTT----GTGAATCCCGC-TCGT-----C--TGTGAT--CC--TCTCCGAT----AAC--AC-CCT-----T---------TG-C----TCTCTC-G-C-A------GT-TCTGTT-------GA-CTGAGCA-AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT-----T-----tgaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|9 : ---A--ACTT----GTAA-TCTCGC-TCCT-----C--TGCGAT--CC--TC-CCGTTA--AAGT--AC-TCC-----T--T---TGCTA-CAGTGTATCTC-GCC-GA-----GT-T-CGTT-------GA-C-------TG----TAG-CAATACCAAGT---CTCTGC-AAGC--G-CTGGAGC-GCCACAG-G--CC-----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 6666666666666666666666666666666666 111111 11111 111111111111 3333333333333333 5555555555555555555 5555555555555555555555555555 22222222222 33333333333333333333333 11111 4444444444444444444444444444 11111111111111 11111 111 1111111
lowQualScore : 44 3 3 3 3 1 6 8888888888888888888888888888888888 66 222222 11111 666666 3 3 3 3 88 3 55 555 3 3 3 3 5 55 2 4444 777777777777 555 3 666 1 3333333333333333 4 9999999999999999999 7777 3 88888888 3 77 44 2222222222222222222222222222 3 6666 3 99999999999 3 77777777777777777777777 3 888 3 55 3 4 4 00000 4 4444444444444444444444444444 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : .. . . . . . . .................................. .. ...... ..... ...... . . . . .. . .. ... . . . . . .. . .... ............ ... . ... . ................ . ................... .... . ........ . .. .. ............................ . .... . ........... . ....................... . ... . .. . . . ..... . ............................ .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 66 3 1 3 6 1 4 6666666666666666666666666666666666 11 888888 11111 444444 6 6 6 6 66 6 00 888 3 3 3 3 4 88 8 7777 111111111111 888 6 444 3 2222222222222222 4 8888888888888888888 1111 1 22222222 1 33 22 2222222222222222222222222222 1 5555 1 88888888888 6 88888888888888888888888 6 333 6 00 6 0 0 00000 0 3333333333333333333333333333 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA---AGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAC--ACNCT----TT-----T-CTG-C----TCTCTC-G-C-GA-CC---GT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA---AGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAC--ACNCT----TT-----TCCTG-C----TCTCTC-G-C-GA-CC---GT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGATCAGTTTTTCGTT-CTTCACTCAATAAGCAAATAACAATAGGAAAGATTAAG-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGGTA-TCAAATTGCA-TAAAAATGCGAGA-GC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT--------------------TTT----AGAAATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCGATANGAAAT--ACGAC----TTGTAAATCCCG-C----TCCTTT-G-C-GATCC---TC-TCCGAT-------AA-C-------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACATGTGGA--AAAAT-TGTCG-TTCCAGATGAAAGGTTTGGCGTT-CTTCACTCAATA-------AACAA--GGAACAAT-AGG-A-------A---GGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------T-GTGATGATC--CCTTCGATT--AAAC--AC--------------TCCTGGC----ACTCTC-A-C-GA-CCTCCGT-TCCGTT-------TA-C-------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|12 : ACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG--TGCC-A--TAGTATTTCGTTC-ACAAATTGCA-TGAAAACGCGAGA-GTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : T----GTATATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCAATA-----C--TCACTAAAAGTAGA--TCTTA-C---------C-G-C-G--CC---GT-TCCGTT-------TA-C-------TGACCTCAGTCATTGTC-ATTT------GC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaaTCTC-G-C-----C---GTATCCGCT-------GA-CCTGAGCAAAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : CTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT---------------------TT----TTAAATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CGAT---AAAC--ACT---------------CTG-C----TCTCT--A-C-TACCC---GT-TCCGTT-------GA-C-------
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA--GGCC-A--TA---TTTCGTTA-TCGAATTGCA-CGCAAATGAGAGA-GC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCt
gi|16 : GCTG-TTCCAGACGAAAAGTTTTTCGTT-C--------------AAATAACAATAGGAGAGAGTAAG-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : --ACTT----GTAAATCCTGC-TCCT-----C--T-GTGAT--CC--GCCCCGTTA--GATCTAACACT----TT-----T--TG-C----TCTCTC-G-C-
gi|18 : acg-----TCCTG-C----TC-CTCTG-T-GATCC---GC-CCCGTT------------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-AC-G-----G-GG-CT----TAATCTT------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TAtggacggggcttaatctttcttattgttatttattattta
gi|18 : acgacttgtaaaAATAA-TAAATAACAATAAGAAAGATTAAG-CCCCGTCCA---
gi|19 : acgacttgtaaatcctgctcctctgtgatccgccccgttagatctaacactttttgctctctcgcAATGAATTTCAAACAGGTGGT--AAAAC-TGCCG-TTC-AGATGAAAAGTTTCTCGCT-CTTCACTGAATAAACAAATAACAATAGGAAAGATTAAGTCCCCGCCCA---ta
gi|2 : ATCAATTTCAAACAGGTGGA--AACACATTCTGGTTCCAGATGAAAA-TTTTTCGTT-CTTCA-TCA-TAA-CAA-TAACA-TAGGAAAGATTAG---CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAA-CGCCTA--GA---TTTTGTTA-TCAA-TTGCA-TGAAAATGTGAGA-GT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT-----AA---AAT---A--GCTT----GTAAATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCGATA--A-----ACTCT----T---------TG-C----TCTCTC-G------CC---GT-TCCGTTTGACTGAGG-C-------AGG--T-AGTCA--TTCCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATCT-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGCA-TGAAAACGCGAGA-GT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAGGTGGAACAAAAC-TTCCG-T--------------------TT-CTTCACTCAATAAACA
gi|25 : acATTTCAAACAGGTGGA--AAAGC-TGCTG-TTTCAGATGAAAAGTTTTTCGTT-C
gi|26 : -------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAGGTGGT--AAAAC-TGCTG-TTCCAGAg
gi|3 : AATCCATTTCAAACAGGTGGA--AAAAC-TG----TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA--CACC-A--GA---TT-CGTTA-TCAAATTGTA-TGAAAATGTGAGA-GC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT-----AA---AAT---ACGACTT----GTAAATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCGTTA--A--C--ACTCT----TT---------G-C----TCTCTC-G-CTGA-C------------T-------GAGC-------AAGA-CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC-A--TA---TTTCGTTA-TCAAATTGCC-TGAAAATGCGAGA-GC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------------TT----CAAAATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCGAT----AAC--ACTCT----TT--------TG-T----TCTC
gi|4 : agaATTCCAAACAGGTGGA--AAA-C-TGCTG-TTTCAGATGAAAAGTTTTTCGTT-CTTTACCCAATAAACAAATAACAATAGGAAACATTAAG-TCCCGCACA---Actttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAGGTGGG--AAATC-T-CTG-TTCCAGATGAAAAGTTTTTGGTTTCTTCACT----AAATAAAT-----T--GAAATATT--------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA--TGCC-AAATA---TTTTGTTA-AATAATTGCAATGAAA-TGTGAGAAGC-TCCAGGG-GCT-TGTTCCC--GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATT-----AAAATA-T---G--ACTTGTACGTAAATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCGATA--------ACACT----TT-----T--TA-C----TCTCTC-G-C-
gi|6 : atAATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTATCGTT-CTTCCCTAAATAAACCAATAACAATAGGAATT-TTAA----------A---AGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCACGCGCC-A--GA---CTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATTG----AA---A-T---ATGACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCGATA--------ACACT----TT-----T--TG-C----TCTCTC-G------CC---GT-TCCGGC-------GA-CTGAGCA-AAG--CCAGTCAag
gi|7 : ATTNNNNNNNNNNNNN--NNNAC-TGCTG-TTCCAGATGAAAAGTGTTTCGTT-CC--------------AATAACAATAGGAAAGACTAAG-TCCCGCCCA---A------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC--CGCG-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAGA-GC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AA---A-TTACG--ACTT----GTGAAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCGAT----AAC--ACTCT----TT-----
gi|8 : --GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA--CGCC-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCAAGA-GC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA---A-T---ACGACTT----GTGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCGAT----AAC--ACCCT----T---------TG-C----TCTCTC-G-C-A-------GT-TCTGTT-------GA-CTGAGCA-AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT----T-----gaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|9 : ---A--ACTT----GTAA-TCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCGTTA--AAGT--ACTCC----TT-----TGCTA-CAGTGTATCTC-GCC-GA------GT-T-CGTT-------GA-C-------TG----TAG-CAATACCAAGT---CTCTGC-AAGC--G-CTGGAGC-GCCACAG-G--CC----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
Alignments
lowQualScore : 6666666666666666666666666666666666 111111 11111 111111111111 3333333333333333 5555555555555555555 444444444444444444444444444444 22222222222 33333333333333333333333 11111 4444444444444444444444444444 11111111111111 11111 111 1111111
lowQualScore : 44 3 3 3 3 1 6 8888888888888888888888888888888888 66 222222 11111 666666 3 3 3 3 3 55 3 55 555 3 3 3 3 5 55 2 4444 777777777777 555 3 666 1 3333333333333333 4 9999999999999999999 7777 3 88888888 3 77 44 888888888888888888888888888888 3 6666 2 3 99999999999 3 77777777777777777777777 3 888 3 55 3 4 4 00000 4 4444444444444444444444444444 88 55 8 55 77777777777777 3 4 4 99 4 4 00000 222 3333333 55 777 55 4 8 4 0 4 4 3
lowQualScore : .. . . . . . . .................................. .. ...... ..... ...... . . . . . .. . .. ... . . . . . .. . .... ............ ... . ... . ................ . ................... .... . ........ . .. .. .............................. . .... . . ........... . ....................... . ... . .. . . . ..... . ............................ .. .. . .. .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 66 3 1 3 6 1 4 6666666666666666666666666666666666 11 888888 11111 444444 6 6 6 6 6 00 6 00 888 3 3 3 3 4 88 8 7777 111111111111 888 6 444 3 2222222222222222 4 8888888888888888888 1111 1 22222222 1 33 22 222222222222222222222222222222 1 5555 9 1 88888888888 6 88888888888888888888888 6 333 6 00 6 0 0 00000 0 3333333333333333333333333333 44 55 0 55 77777777777777 6 0 0 55 0 0 00000 555 0000000 55 000 55 0 0 0 3 0 0 4
consensus : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA---AGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAC--AC-NCT-----T-----TT-CTG-C----TCTC-TC-G-C-GA-CC---GT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA---AGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAC--AC-NCT-----T-----TT-CTG-C----TCTC-TC-G-C-GA-CC---GT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGATCAGTTTTTCGTT-CTTCACTCAATAAGCAAATAACAATAGGAAAGATTAAG-CCCCGCCNAGAAAGATTAAGGC-CCACCCAATGCTTGC--GACTGGAC------TTGCTTA-----AATA-ACG--GAAT-GACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGGTA-TCAAATTGCA-TAAAAATGCGAGA-GC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACA---TTAAAGTG-TT--TGCATGT-AACCAAT-CTGATT--------------------TTT----AGAAATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCGATANGAAAT--ACGACT-----TGTAAATC-CCG-C----TCCT-TT-G-C-GATCC---TC-TCCGAT-------AA-C-------AGG--TCAGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-GA-G-----G-G--CT----T-----T------TC-----CTA-TTG--CT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACATGTGGA--AAAAT-TGTCG-TTCCAGATGAAAGGTTTGGCGTT-CTTCACTCAATA-------AACAA--GGAACAAT-AGG-A-------A---GGATT---------------GCTTGC--GACTGGAC------TTGCTTA-----GCCA-ACG--GAAT-GACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACA---T
gi|11 : AATTCCCGC-TCCT--------T-GTGATGATC--CCTTCGATT--AAAC--AC-TC---------------CTGGC----ACTC-TC-A-C-GA-CCTCCGT-TCCGTT-------TA-C-------TGACCTCAGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GC-G-----G-GGCCT----T-----TAATCTTTC-----CTA-TTT--TTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|12 : ACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG-TGC--C-A--TAGTATTTCGTTC-ACAAATTGCA-TGAAAACGCGAGA-GTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCA---CTAAAt
gi|12 : T----GTATATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCAATA-----C--TC-ACTAAAAGT-----A----G-A----TCTTACC-G-C-G--CC---GT-TCCGTT-------TA-C-------TGACCTCAGTCATTGTC-ATTT------GC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaaTC-TC-G-C-----C---GTATCCGCT-------GA-CCTGAGCAAAG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTGG-----G-G--CT----TAA---T------TCTCCTTCT--TTG--TT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : CTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACA---TTAGAGCGATTAATACA-GCAAACAAATACTGATT---------------------TT----TTAAATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CGAT---AAAC--AC----------------T-CTG-C----TCTC-T--A-C-TACCC---GT-TCCGTT-------GA-C-------
gi|15 : AT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA-GGC--C-A--TA---TTTCGTTA-TCGAATTGCA-CGCAAATGAGAGA-GC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTCt
gi|16 : GCTG-TTCCAGACGAAAAGTTTTTCGTT-C--------------AAATAACAATAGGAGAGAGTAAG-CCCCGCC----------GAGC-----------GCTTGCATAATTGACC------TTGCCCA-----GTCA-ACG--GAAC-GGCG
gi|17 : ctctttgctctctTTTCATTTTCCTTTCC-AAGC--G-CTGG-GC-G-----G-GA-CT----T-----G------AT-----CTC-TCA---T-A--T-----------------TT-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : --ACTT----GTAAATCCTGC-TCCT-----C--T-GTGAT--CC--GCCCCGTTA--GATCTAAC-ACT-----T-----TT--TG-C----TCTC-TC-G-C-
gi|18 : acg-----TC-CTG-C----TC-C-TCTG-T-GATCC---GC-CCCGTT------------------AGA--TCTAACACTTT---TTGCTCTCT------C--G-CTGG-AC-G-----G-GG-CT----TAATCTT------TC-----TTA-TTG--TT-A--TTT-----A-T-T----ATT-TAtggacggggcttaatctttcttattgttatttattattta
gi|18 : acgacttgtaaaAATAA-TAAATAACAATAAGAAAGATTAAG-CCCCGTCCA---
gi|19 : acgacttgtaaatcctgctcctctgtgatccgccccgttagatctaacactttttgctctctcgcAATGAATTTCAAACAGGTGGT--AAAAC-TGCCG-TTC-AGATGAAAAGTTTCTCGCT-CTTCACTGAATAAACAAATAACAATAGGAAAGATTAAGTCCCCGCCCA---ta
gi|2 : ATCAATTTCAAACAGGTGGA--AACACATTCTGGTTCCAGATGAAAA-TTTTTCGTT-CTTCA-TCA-TAA-CAA-TAACA-TAGGAAAGATTAG---CCCGCCC-----TATTG------CG--------TTGC--GACTCG-C------TTGCTTAATATAGTTATGCGCTGAAC-GG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAACGC--CTA--GA---TTTTGTTA-TCAA-TTGCA-TGAAAATGTGAGA-GT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCA---TTAGA-----------AT-----CGAAT-CTGATT-----AA---AAT---A--GCTT----GTAAATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCGATA--A-----AC-TCT-----T---------TG-C----TCTC-TC-G------CC---GT-TCCGTTTGACTGAGG-C-------AGG--T-AGTCA--TTCCATTGTCCTTTGC-AAGA--G-CTGG-CG-G-----G-G--CTTATCT-----C------TC-----CTATTTG--TTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : --TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacG--TT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGCA-TGAAAACGCGAGA-GT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAGGTGGAACAAAAC-TTCCG-T--------------------TT-CTTCACTCAATAAACA
gi|25 : acATTTCAAACAGGTGGA--AAAGC-TGCTG-TTTCAGATGAAAAGTTTTTCGTT-C
gi|26 : -------AGG--TCAGTCATTTTCCATTT--CCTTGC-AAGC--G-CTGG-GC-G-----G-G--ga
gi|27 : AACCTATCTCAAACAGGTGGT--AAAAC-TGCTG-TTCCAGAg
gi|3 : AATCCATTTCAAACAGGTGGA--AAAAC-TG----TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAg
gi|3 : AATGCTTGC--GACTGGAC------TTG--------------------AAT-GATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA-CAC--C-A--GA---TT-CGTTA-TCAAATTGTA-TGAAAATGTGAGA-GC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACA---TTAAA------------------TCAAT-CTGATT-----AA---AAT---ACGACTT----GTAAATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCGTTA--A--C--AC-TCT-----T-----T----G-C----TCTC-TC-G-CTGA-C------------T-------GAGC-------AAGA-CCAGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GC-G-----G-GG-CT----TAATCTT------TC-----CTA-TTG--TT-A--TTTT----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTatgcttgcgactggacttgaatgatagatgtttgaaatagtagcctaagcgatttcacaccagattcgttatcaaattgtatgaaaatgtgagagcttcagggggttccccctaaaataattttcaaaatacattaaatcaatctgattaaaatacgacttgtaaatcccactcctctgcgatcccctccgttaacactctttgctctctcgctgactgagcaagaccagtcattttccattgtcctttgcaatcgctgggcggggcttaatctttcctattgttattttgtttatttagcgatgaaaaaaacacttttcatcaggaacagcagttttcccacctgtttgaaattcatt
gi|4 : aatccatttcaaacaggtggaaaaactgttccagatgaaaagtttttcgttcttcactcaataaacaaataacaataggaaAAGTC-CCGCCCAAGGCTTGC--GACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCC-TGAAAATGCGAGA-GC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA---------------------TACATGT-AACCAAT-CTGATT---------------------TT----CAAAATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCGAT----AAC--AC-TCT-----T-----T---TG-T----TCTC-
gi|4 : agaATTCCAAACAGGTGGA--AAA-C-TGCTG-TTTCAGATGAAAAGTTTTTCGTT-CTTTACCCAATAAACAAATAACAATAGGAAACATTAAG-TCCCGCACA---Actttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcaTTCCAAACAGGTGGG--AAATC-T-CTG-TTCCAGATGAAAAGTTTTTGGTTTCTTCACT----AAATAAAT-----T--GAAATATT--------------------TAAGCCACCGCCCA-TGCTTGC--GACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA-TGC--C-AAATA---TTTTGTTA-AATAATTGCAATGAAA-TGTGAGAAGC-TCCAGGG-GCT-TGTTCCC--GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCA-TT--TACATGT-AATCAAT-CTGATT-----AAAATA-T---G--ACTTGTACGTAAATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCGATA--------AC-ACT-----T-----TT--TA-C----TCTC-TC-G-C-
gi|6 : atAATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTATCGTT-CTTCCCTAAATAAACCAATAACAATAGGAATT-TTAA----------A---AGATTAAGCC-CCGCCCAATGCT---------GAAC------TTGCTTA-----GTTA-ACG--GAAT-TCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCA-CGCGCC-A--GA---CTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACA---TTA------------------AATCAAT-CTGATTG----AA---A-T---ATGACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCGATA--------AC-ACT-----T-----TT--TG-C----TCTC-TC-G------CC---GT-TCCGGC-------GA-CTGAGCA-AAG--CCAGTCAag
gi|7 : ATTNNNNNNNNNNNNN--NNNAC-TGCTG-TTCCAGATGAAAAGTGTTTCGTT-CC--------------AATAACAATAGGAAAGACTAAG-TCCCGCCCA---A------------------TGCTTGC--TACTGGAC------TTGTTTA-----GTCA-ACG---AAT-GGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC-CGC--G-A--GA---TTTCGTTA-TCAG-------TGAAAATGCGAGA-GC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACA---TTAAAGCG-TT--TAAATAT-AACCAAT-CTGATT-----AA---A-TTACG--ACTT----GTGAAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCGAT----AAC--AC-TCT-----T-----T
gi|8 : --GAAT-GGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCAAGA-GC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCG-TT--TACATGT-AACCAAT-CTGATTTTTAAAA---A-T---ACGACTT----GTGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCGAT----AAC--AC-CCT-----T---------TG-C----TCTC-TC-G-C-A-------GT-TCTGTT-------GA-CTGAGCA-AGG--TCAGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GC-G-----GCG--CT----T-----gaggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|9 : ---A--ACTT----GTAA-TCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCGTTA--AAGT--AC-TCC-----T-----TTGCTA-CAGTGTATC-TC-GCC-GA------GT-T-CGTT-------GA-C-------TG----TAG-CAATACCAAGT---CTCTGC-AAGC--G-CTGGAGC-GCCACAG-G--CC----T-----T------AA-----TTT-TCGGTTT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATTaatctctccta
blockSeqs : AC A G T C A A AAGATTAAGCCCCGCCCAAT AT CGATTA ATATA TGCGCT T G G G A GC T AA GTA A A A A T GT C GCT TTATTTTTATAT CCC A TAC A GCGATTAATACAGCA A TTTAAAAATACG GTAC A AAGGAC T GA GA AGATCTAACACTTTT G AGTG A T CGACCTCC A GACCTGAGCAAAG C TTC G CT C A G CCACA C GCCTTTAATCTTTC AT GT T CT AAGCCGCTCAGGG G C T TA G C ACGTA AAA TTTTTTC AC TTC CT G A C A G T
blockSeqs : . . . . G A A TAAGCCACCGCCCAT . . . ACG . . . . . . . . . . . . . A T A TGT . . . . G GCATTTACATGT . AAAATACG . . CAA . G . AAAGTACTCCTTTGC . . . . CTACCC . TGACTGAGGCAGG C TTC . . . . . . . CTTAATTCTCCTT A . C . GTTCT . . . A . . . TA . . . . . A . . . T
blockSeqs : . . . . C A A CCCGCCCTATTGCG . . . ACG . . . . . . . . . . . . . T T C GC . . . . G GCGTTTAAATAT . AAAATATG . . C . . . ACTCACTAAAAGTA . . . . TGATCC . GACTGAGCAAAG C GCT . . . . . . . GCTTAATCTTTC C . . . TGTTT . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . C A A GCCCCGCCGAGC . . . AAA . . . . . . . . . . . . . C T G GC . . . . A GCGTTTACATGT . GAAATATG . . C . . . TAAACACTCC . . . . CTGAC . GACTGAGCAAGG C GTC . . . . . . . GCTTAATCTTTC A . . . GTTT . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . C A A GTCCCGCCCAAT . . . ACG . . . . . . . . . . . . . G T C GC . . . . A TACATGT . AAATTACG . . C . . . AACACTCTTT . . . . CGCC . TACTGACC C GTC . . . . . . . CTTATCTCTC A . . . GTTT . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . C A A GAAGGATT . . . ACG . . . . . . . . . . . . . G T C CC . . . . A AT . AAAATA . . C . . . AACACTCTTT . . . . CCGA . TACTGACC C TTC . . . . . . . ACTTGAT T . . . GTCT . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . A A . . . . . . . . . . . . . . . . . . C C T GC . . . . A . . . . . C . . . AACACTTTT . . . . CC . GAGCAAGA A TT . . . . . . . CCTTAA . . . . GTT . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G T C GC . . . . . . . . . . C . . . AACACTTTT . . . . CC . GACTG . T . . . . . . . . . . ATT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . C G . . . . . . . T . . . AACACCCTT . . . . CC . AGA . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . C . . . AAACACTC . . . . CA . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . C . . . AAACTCTT . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : AGCCCCGCCCAAT********************* AAAATACG*********** AACACTTTT********************* CC********* GACTGAGCAAGG*********** GCTTAATCTTTC****************
originalCons : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAG-CCCCGCCCA---AGATTAAGCC-CCGCCCAATGCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATT-----AA---A-T---A--ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATA--AAAC--AC-NCT-----T-----TT-CTG-C----TCTC-TC-G-C-GA-CC---GT-TCCGTT-------GA-C-------AGG--TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-G--CT----T-----T------TC-----CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
finalCons : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCGTT-CTTCACTCAATAAACAAATAACAATAGGAAAGATTAAAGCCCCGCCCAAT---------------------GCTTGC--GACTGGAC------TTGCTTA-----GTCA-ACG--GAAT-GGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA-CGC--C-A--TA---TTTCGTTA-TCAAATTGCA-TGAAAATGCGAGA-GC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACA---TTAAAGCG-TT--TACATGT-AACCAAT-CTGATTAAAATACG-----------ACTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCGATAACACTTTT---------------------TG-C----TCTC-TC-GCC---------GT-TCCGTTGACTGAGCAAGG-----------TCAGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GC-G-----G-GGCTTAATCTTTC----------------CTA-TTG--TT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Alignments
lowQualScore : 1111111 33333333333333333333 11111 111111 1111111111111111 111111111111 22222222 11111 1111111111 22222222222222 111 1111111
lowQualScore : 44 3 3 3 0 4444444 66666666666666666666 1 88888 4 3 4 4 444444 6666666666666666 4 0 3 3 3 88 88 555 3 3 3 3 5 88888 4444 777777777777 555 3 666 1 55555555 55 55555 55 88 7777 3 88888888 3 77 44 44 6666 77 999999999 3 7777777777 888888 3 888888 6666 6666 888888 333 3 3 4 5 3 5 3 333 3 44 3 3 99999 55 55 4 9999 00000000000000 3 3 3 88 3 3 99999 111 1111111 55 666 55 3 7 4 0 4 4 3
lowQualScore : .. . . . . ....... .................... . ..... . . . . ...... ................ . . . . . .. .. ... . . . . . ..... .... ............ ... . ... . ........ .. ..... .. .. .... . ........ . .. .. .. .... .. ......... . .......... ...... . ...... .... .... ...... ... . . . . . . . ... . .. . . ..... .. .. . .... .............. . . . .. . . ..... ... ....... .. ... .. . . . . . . .
lowQualScore : 66 3 3 6 7 4444444 11111111111111111111 1 99999 0 3 4 4 444444 6666666666666666 0 7 6 6 6 66 66 888 3 3 3 3 4 33333 7777 111111111111 888 6 444 3 00000000 33 77777 66 66 1111 1 22222222 1 33 22 22 5555 33 000000000 1 4444444444 222222 1 222222 5555 5555 888888 777 6 6 0 6 6 7 6 999 6 66 3 6 11111 55 55 0 1111 22222222222222 3 6 6 66 6 6 11111 444 8888888 00 444 00 6 3 0 3 0 0 4
consensus : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCG-TTCTTCACTCAATAAACAAATAACAATAGG-------AA--------------------AGATTAAAGCC-CCGCCCAAT-GC-TTGCGACTGGAC------TTGCTTA-----GTCA-ACG--GAA-TGGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC--ATA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACAT---TAAAGCGTTTACATGTAACCAATCTGATT----AAAATAC-GA--CTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCG--A----T--A------A--C-ACT---------CTT------TGCT-C------TCT----CG----C------CG-T-TCCG-TTGAC-TG-AGCAAGGTC-AGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GCG-----GGGC--TTAATCTCTCCT--A-TTGTT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
Reference ( family-675 ) : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTTTCG-TTCTTCACTCAATAAACAAATAACAATAGG-------AA--------------------AGATTAAAGCC-CCGCCCAAT-GC-TTGCGACTGGAC------TTGCTTA-----GTCA-ACG--GAA-TGGCGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC--ATA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCAGGGNGCT-TGTCCCCC-GC-CC------------CCTTA---AAATTGTTTTCAAAA-TACAT---TAAAGCGTTTACATGTAACCAATCTGATT----AAAATAC-GA--CTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CC--TCTCCG--A----T--A------A--C-ACT---------TTT------TGCT-C------TCT----CG----C------CG-T-TCCG-TTGAC-TG-AGCAAGGTC-AGTCATTTTCCATTTTCCTTTGC-AAGC--G-CTGG-GCG-----GGGC--TTAATCTTTCCT--A-TTGTT-A--TTT-----GTT-T----ATT-TAGC-GAAGAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|1 : AATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGATCAGTTTTTCG-TTCTTCACTCAATAAGCAAATAACAATAGG-------AAAGATTAAGCCCCGCCNAGAAAGATTAAGGCC-C-ACCCAAT-GC-TTGCGACTGGAC------TTGCTTA-----AATA-ACG--GAA-TGACGGATGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC--ATA---TTTCGGTA-TCAAATTGC-ATAAAAATGCGAG-AGC-TCCAGGTTGCT-TGTCCTCC-GC-CC------------CCTTA---AAATTGGTTTCAAAA-TACAT---TAAAGTGTTTGCATGTAACCAATCTGATT----------------TTT----AGAAATCCCGC-TCCT-----T--T-GCGAT--CC--TCTCCG--A----T--ANGAAATA--CGACT---------TGTAAATCCCGCT-C------CTT----TGCGATC------CT-C-TCCG-ATAAC--------AGGTC-AGTCATATTCCATTTTCCTTTGC-AAGC--G-CTAG-G-A-----GGGC--T-----TTTCCT--A-TTGCT-A--TTT-----GTT-A----ATT-TAGC-GAATAAC-G--AA-AA-AC-----TT---TT-------CA--T---CTGTAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|10 : ATTAATTTCAAACATGTGGA--AAAAT-TGTCG-TTCCAGATGAAAGGTTTGGCG-TTCTTCACTCAATAAACAAGGAACAATAGG-------AA--------------------GGATT-----------------GC-TTGCGACTGGAC------TTGCTTA-----GCCA-ACG--GAA-TGACGGATGTTTGA-A-ATAGTAGC-CCAAGCAATTTCA--CGCC--ATA---TTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGC-TCCTGGGTGCT-TGTCCCCC-GC-CG------------CCTCA---AAATTGTTTTCAAAA-TACAT---
gi|11 : AATTCCCGC-TCCT--------T-GTGATGATC--CCTTCG--A----TTAA------A--C-ACT---------CCT------GGCA-C------TCT----CA----CGACCTCCG-T-TCCG-TTTAC-TG-ACC----TC-AGTCATGTGC-ATTTT-----GCGAAGCCTG--TGG-GCG-----GGGCCTTTAATCTTTCCT--A-TTTTTTA--TTT-----GTT------ATTGCAGCCGAAGAGC-G--AAGAA-AC-----TT---TT-------CC--T---CT-GAA--CAGGC-AG--TTTAA-CACGCTG-TTGACATTCATT
gi|12 : ACGTTTGT-A-ACAGTAGC-CCAAGCAATTGCG--TGCC--ATAGTATTTCGTTC-ACAAATTGC-ATGAAAACGCGAG-AGTATTCAAAAAAATGTATATTCC-GCTCC------------TCTTA---TGATCCTCTCCAATA-CTCAC---TAAAt
gi|12 : T----GTATATTCCGC-TCCT-----C--TTATGAT--CC--TCTCCA--A----T--A------CT-C-ACTAAAAGTAGATCT------TAC----------CG----CG----C------CG-T-TCCG-TTTAC-TG-ACC----TC-AGTCATTGTC-ATTT------GC-AAGC--G-CTGagtagatcttaccgcgccgttccgtttactgacctcagtcattgtcatttgcaagcgctg
gi|13 : acgtttgtaacagtagcccaagcaattgcgtgccatagtatttcgttcacaaattgcatgaaaacgcgagagtattcaaaaaaa------TCT----CG----C------CG-TATCCG-CTGACCTG-AGCAAAGTC-AGTCATTTTCCATTTTCCTTTGC-AAGC--GCCTGG-GTG-----GGGC--TTAAT-TCTCCTTCT-TTGTT-ACTTCT-----GTTCT----ATT-TAGC-GCAGAGC-GA-AA-AA-AC-----TT---TT-------CA--TTTCTTGGAA--CA-ACAAGT-TTTAC-CAC-CTGTTTGAACTTGAT
gi|14 : CTCCC-GC-CC------------CCTAC---AAGTTGTTTCGAAAA-TACAT---TAGAGCGATTA-ATACAGCAAAC-----------AAATACTGAT-TTT----TTAAATCCCGCATCCT-----CAAT-GTGAT--CC--TCT-CG--A----TA-A------A--C-AC-----------TC------TGCT-C------TCTACTAC-----C------CG-T-TCCG-TTGAC-T
gi|15 : A-TGGCGGATGTTTGA-A-ATAGTAGC-CCAAACAATTTCA--GGCC--ATA---TTTCGTTA-TCGAATTGC-ACGCAAATGAGAG-AGC-TCCAGGGTGCT-TGTGTCCC-GC-CC------------CCTTA---AAAATGTTTTC
gi|16 : CT---------CTT------TGCT-C------TCT----CG----C------CG-T-TCCG-TTGAC-TG-GGCAAGGTC-AATTAT---------------GC-AAGC--G-CTCG-GCG-----GGGC--TTACTCTCTCCT--A-TTGTT-A--TTT--------------------------GAAC-G--AA-AA-AC-----TT---TT-------CG--T---CTGGAA--CA-GC-
gi|17 : TTTCATTTTCCTTTCC-AAGC--G-CTGG-GCG-----GGAC--TTGATCTCTCAT--A-TT--------------------------T-TAGC-GAAGAAA-G--GA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTAC-AAC-CTGTTTGAAATTGATT
gi|18 : AC-GA--CTT----GTAAATCCTGC-TCCT-----C--T-GTGAT--CC--GCCCCGTTAGATCT--A------A--C-ACT---------TTT------TGCT-C------TCT----CG----C------TG-
gi|18 : C--G-CTGG-ACG-----GGGC--TTAATCTTTCTT--A-TTGTT-A--TTT-----A-T-T----ATT-TAgacggggcttaatctttcttattgttatttattattta
gi|19 : acgacttgtaaatcctgctcctctgtgatccgccccgttagatctaacactttttgctctctAATGAATTTCAAACAGGTGGT--AAAAC-TGCCG-TTC-AGATGAAAAGTTTCTCG-CTCTTCACTGAATAAACAAATAACAATAGG-------AA--------------------AGATTAAGTCC-CCGCCCA
gi|2 : ATCAATTTCAAACAGGTGGA--AACACATTCTGGTTCCAGATGAAAA-TTTTTCG-TTCTTCA-TCA-TAA-CAA-TAACA-TAGG-------AA--------------------AGATTAG---C-CCGCCCTATTGCGTTGCGACTCG-C------TTGCTTAATATAGTTATGCGCTGAA-CGG----TGTTTGA-AGATAGTAGC-CTA-GCGATTTCAA-CGCCT-AGA---TTTTGTTA-TCAA-TTGC-ATGAAAATGTGAG-AGT-TT-AGGGC------TCTCC----------------------TA---GAAATGTTTTCAAAAATGCAT---TAGA--------AT----CGAATCTGATT----AAAATA---G--CTT----GTAAATCCCGC-TTCTAAGGAC--T-AT-ATG-CCGATCTCCG--A----T--A------A----ACT---------CTT------TGCT-C------TCT----CG----C------CG-T-TCCGTTTGAC-TG-AGGCAGGT--AGTCA--TTCCATTGTCCTTTGC-AAGA--G-CT-G-GCG-----GGGC--TT-ATCTCTCCT--ATTTGTTCA--TTT-----GTT-T----ATT-TAGC-G-TGAAT-G--AA-AACAC-----TT---TTTTTTTTCTA--T---CTGGTA--TG-GC-AAG-TTTTT-CAC-CTG-TTGAAATTGA
gi|20 : TT-A--TTT-----GTT-T----ATT-TAGC-AAAGAACTA--AA-AA-AC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|21 : taatgtttaattctcacGTT-A--CTT-----GTC-T----GTT-TCGC-TAAGAAT-G--AA-CA-CC-----TT---TT-------CA--T---CTGGAA--CA-GC-AGT-TTTTC-CAC-CTGTTTGAAATTGATT
gi|22 : TT-TACT-GAAGAGC-G--AA-AA-AC-----TTTA-TT-------CAACT---CTGAAA--CA-GC-AGT-ATTTCACAC-CT-TTTCAA
gi|23 : ---TTTCGTTAATCAAATTGC-ATGAAAACGCGAG-AGT-TTCAGGGGGCT-TGCCCCCC-CC-Ctag
gi|24 : AATCAATTTCAAACAGGTGGAACAAAAC-TTCCG-T---------------------TTCTTCACTCAATAAACA
gi|25 : acATTTCAAACAGGTGGA--AAAGC-TGCTG-TTTCAGATGAAAAGTTTTTCG-TTC
gi|26 : AGGTC-AGTCATTTTCCATTTCC--TTGC-AAGC--G-CTGG-GCG-----GGGga
gi|27 : AACCTATCTCAAACAGGTGGT--AAAAC-TGCTG-TTCCAGA
gi|3 : AATCCATTTCAAACAGGTGGA--AAAAC-TG----TTCCAGATGAAAAGTTTTTCG-TTCTTCACTCAATAAACAAATAACAATAGG-------AA--------------------A------------------AT-GC-TTGCGACTGGAC------TTG--------------------AA-TGATAGATGTTTGA-A-ATAGTAGC-CTAAGCGATTTCA--CACC--AGA---TT-CGTTA-TCAAATTGT-ATGAAAATGTGAG-AGC-TTCAGGGGGTT-------------CC------------CCCTA---AAATAATTTTCAAAA-TACAT---TAAA--------------TCAATCTGATT----AAAATAC-GA--CTT----GTAAATCCCAC-TCCT-----C--T-GCGAT--CC--CCTCCG--T----T--A------A--C-ACT---------CTT------TGCT-C------TCT----CG----C-----------------TGAC-TG-AGCAAGACC-AGTCATTTTCCATTGTCCTTTGC-AATC--G-CTGG-GCG-----GGGC--TTAATCTTTCCT--A-TTGTT-AT-TTT-----GTT-T----ATT-TAGC-GATGAAA-A--AA-AC-AC-----TT---TT-------CA--T---CAGGAA--CA-GC-AGT-TTTCC-CAC-CTGTTTGAAATTCATTg
gi|4 : AAAGTC-CCGCCCAAG-GC-TTGCGACTAGAT------TTGCTTA-----GTCG-----------------TGTTTGA-A-ATTGTAGC-CCAAGCAATTTCA--CGCC--ATA---TTTCGTTA-TCAAATTGC-CTGAAAATGCGAG-AGC-TCCGGGGCGCT-TGT-CCCC-G--CC------------CCTTA---TAATTGTTTTCGAAA------------------TACATGTAACCAATCTGATT-----------------TT----CAAAATCCCGC-TCCT-----C--T-GTGAT--CC--TCTCCG--A----T--A------A--C-ACTC--------TTT------TGTT-C------TC
gi|4 : agATTCCAAACAGGTGGA--AAA-C-TGCTG-TTTCAGATGAAAAGTTTTTCG-TTCTTTACCCAATAAACAAATAACAATAGG-------AA--------------------ACATT-AAGTC-CCGCACAAT-GC-TTGCGActttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacatatcgcaagcattgtgcgggacttaatgtttcctattgttatttgtttattgggtaaagaacgaaaaacttttcatctgaaacagcagttttccacctgtttggaat
gi|5 : agaaagtcccgcccaaggcttgcgactagatttgcttagtcgtgtttgaaattgtagcccaagcaatttcacgccatatttcgttatcaaattgcctgaaaatgcgagagctccggggcgcttgtccccgccccttataattgttttcgaaatacatgtaaccaatctgattttcaaaatcccgctcctctgtgatcctctccgataacactcttttgttctcctttaaacccattcattactttccaaatgaaagttgaatactaaatagctgcagcgtgtcgttgctaattccacacaatgtgttgttgtttaatagtattcaacataTTCCAAACAGGTGGG--AAATC-T-CTG-TTCCAGATGAAAAGTTTTTGGTTTCTTCAC----TAAATAAAT-----T--G-------AA--------------------ATATTTAAGCCACCGCCC-AT-GC-TTGCGACTGGATCGATTATTGCTTA-----GTCC-AAA--GAATTGGCAGATGTTTGAGA-ATAGTAGCGCCAAGCAATTTCA--TGCCAAATA---TTTTGTTA-AATAATTGCAATG-AAATGTGAGAAGC-TCCAGGG-GCT-TGT-TCCC-GC-CCTTATTTTTATATCCTTA---AAATTGTTTTCAAAA-TACAT---TAAAGCATTTACATGTAATCAATCTGATT----AAAATAT-GA--CTTGTACGTAAATCCTGC-TCTT-----C--T-GCAAT--CC--TCTCCG--A----T--A------A--C-ACT---------TTT------TACT-C------TCT----CG----C------
gi|6 : atAATCAATTTCAAACAGGTGGA--AAAAC-TGCTG-TTCCAGATGAAAAGTTTATCG-TTCTTCCCTAAATAAACCAATAACAATAGGAATTTTAAA--------------------AGATT-AAGCC-CCGCCCAAT-G--------CTGAAC------TTGCTTA-----GTTA-ACG--GAA-TTCTGGATACTTGA-A-ATAGTAGC-CGAAGAAATTTCACGCGCC--AGA---CTTCGTTA-TCAAATTGC-ATGAAAATGCGAG-AGG-TTTAGGGGGCT--------C-GC-CC------------CC-TA---AAA----TTTCAAAA-TACAT---TA--------------AATCAATCTGATT----GAAATAT-GA--CTT----GTAAATCCCGC-TCCT-----C--T-GCGAT--CT--CCTCCG--A----T--A------A--C-ACT---------TTT------TGCT-C------TCT----CG----C------CG-T-TCCG-GCGAC-TG-AGCAAAGCC-AGTCAag
gi|7 : ATTNNNNNNNNNNNNN--NNNAC-TGCTG-TTCCAGATGAAAAGTGTTTCG-TTCC--------------AATAACAATAGG-------AA--------------------AGACTAA-GTC-CCGCCCAAT-GC-TTGCTACTGGAC------TTGTTTA-----GTCA-ACG---AA-TGGCGTATGTTTGA-A-AGAGTAGT-CCAAGCGACTTCC--CGCG--AGA---TTTCGTTA-TCAG-------TGAAAATGCGAG-AGC-TCCAG----CC-CCCCCCCC--C-CT------------CCTTCCCCATTTTATTTTCAAAA-TACAT---TAAAGCGTTTAAATATAACCAATCTGATT----AAATTAC-GA--CTT----GTGAAT--CGC-TCCT-----T--A-GCGTT--CC--TCTCCG--A----T--A------A--C-ACT---------CTT------TG
gi|8 : --GAA-TGGCGGATGTTTAA-A-ATTGAAGC-CCAAGCAATATCA--CGCC--ATA---TTTCGTTA-TCAAATTGC-ATGAAAATGCAAG-AGC-TCCAGGGTGCT-TGTCCCCCTGT-CC------------CCTTA---AAATTGTTTTCAAAA-TATGTACTTAAAGCGTTTACATGTAACCAATCTGATTTTTAAAAATAC-GA--CTT----GTGAATCCCGC-TCGT-----C--T-GTGAT--CC--TCTCCG--A----T--A------A--C-ACC---------CTT------TGCT-C------TCT----CG----C------AG-T-TCTG-TTGAC-TG-AGCAAGGTC-AGTCATTTTGCATTTTCCTTTTC-AACC--A-TTGG-GCG-----GCGC--TTAATCTCTCCT--A-aggccagtcttttccctttttgccgggcggggcgaagcttttc
gi|9 : ATAC-GAAACTT----GTAA-TCTCGC-TCCT-----C--T-GCGAT--CC--TC-CCG--T----T--A------AAGT-ACTC--------CTT------TGCTACAGTGTATCT----CG----C------CGAG-TTCG-TTGAC-TGTAGCAATACCAAGT--------------CTCTGC-AAGC--G-CTGGAGCGCCACAGGCC--TTAA--TTTTCG--G-T--TT-A--TTTAAGCCGCT-CAGGGACT-T-GC-GAAGAGC-GTAAA-AA-GCACGTATTAAATC-------AA--T---CGGGAACTCA-GCAAGTCTTTTC-TAC-CTTACCGAAATCGATT