lowQualScore : 1 11
lowQualScore : 44444 44 2 3333 1 9 66 1 22 1 1 1
lowQualScore : ..... .. . .... . . .. . .. . . .
lowQualScore : 88888 33 6 7777 7 4 00 7 44 7 7 7
consensus : AAAATGCAAA-----TA--TAAAA----TTT-AGCTCAAAAC-GTG-TCC--A-TG-TCCC-TTT
Reference ( gi|14 ) : AAAATGCAAA-----TA--TAGAA----TTT-AGCTCAGAAA-GTG-TCC--A-TG-TCCC-TTT
gi|4 : AAAATGCAAA-----TA--TAAAA----TCT-ACCCCAGAAT-GTG-TCC--A-TG-TCCT-TCT
gi|12 : acattaAAAATGCTAA-----TA--CAAAA----TTC-AGCTCAAAAC-GTG-TCC--A-TG-TCCC-GTT
gi|9 : aAAAATGCAAA-----TA--TGAAA----TTT-GGCTCCAAAT-GTG-TCC--A-TG-TCCA-TT
gi|6 : taAAAATGCATA-----CA--TAAAA----TTT-AGCGCAAAAC-GAG-TCC--A-TG-TCCC-TTTa
gi|10 : attaAAAATGCAAA-----TA--TG-------TTT-AACTCAAAAC-GTG-TCC--A-TG-TCAC-TTTa
gi|2 : aAAAATGCAAA-----TA--TAAAA----TTC-AG-TCAAAAATGTG-TCC--A-TG----C-TTTaaga
gi|11 : cattaAGAATGGAAA-----TA--TAAAA----TTT-AGCTCAACAC-ATG-TCT--A-TG-CCCC-CTTtctctt
gi|21 : AAAATGCAA------TA--TC--A----CTT-AGCTCAAAAC-ATG-TCC--A-TG-TCCC-TTtc
gi|5 : aAAAATGCAAA-----TA--TAACA----TTT-TGCATAAAAC-GTG-TTC--A-TA-TCCC-
gi|3 : aaacattaAAAATGCAAT-----TAA-TAAAA----TT--ATCTCA--AC-GTG-TCC--A-TG-TCCC-TTT
gi|17 : aacattaAAATGCAAG-----AA--TAAAA----TTT-AGCTTAGAAC-GTG-TCC--A-TG-TCCT-TTTaa
gi|15 : AAATGCAAA-----TA--TGAAA----TTT-AGCTCCAAAC-GTA-TCC--A-TG-TTCC-TTT
gi|18 : AAATGCAAA-----TA--TA-AA----TTA-AGCTCAAAAC-GTG-CCC--A-TG-CCCC-TTTa
gi|13 : AAATACAG------TA--TAAAA----TTT-AGCTCAAAAC-GTG-TCC--A-TG-TCCA-TTTa
gi|16 : tacAAAT-CAAA-----TA--TAAAA----TTT-AGCTCA-AAT-GTG-TCC--ATTG-TCCC-TT
gi|20 : atAAATGCAAA-----GA--TA--A----TTT-AGCTGAAAAC-GTG-TCC--T-TG-TACA-TTT
gi|7 : tAGTGCAAA-----TACTTAAAA----TTCAAGCTCAAAAC-GTGCCCC--A-TGATCCC-TTTa
gi|1 : AATGCAAACATACTA--TATAACAACTTT-AGCTCA-AAC-GTG-TCC--A-TG-TCTCATTTaa
gi|22 : TGCAAA-----AA--TGAAA----TTT-AGCTCAAAAC-GTT-CTC--A-TG-TCCC-TTTcga
gi|23 : GCAAG-----TA--TCAAA----TTT-AGCTCACAAC-GTG-TCC--A-TG-TCCC-a
gi|19 : A-----TA--TAAAA----TTT-AGCTCAAAAC-CTA-TCC--A-TG-TCCC-TTT
gi|8 : agaaat--TAAAA----TTT-AGCTCAAAAT-GTG-TCCATA-TG-TTCC-TTTaa
gi|24 : acttaactc----TTT-AACTCAAAAC-GTG-TCC--A-TG-TCCC-TTTaaa
Alignments
lowQualScore : 44 777777777 1 1 22 1 1 1
lowQualScore : .. ......... . . .. . . .
lowQualScore : 11 000000000 7 7 33 7 7 7
consensus : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
Reference ( family-670 ) : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
gi|1 : AATGCAAACA--TACTATATAACAACTTTA-GCTCAAA-CGTG-TCC--A-TG-TCTCATTT
gi|10 : AAAATGCAAATA--TG------------TTTA-ACTCAAAACGTG-TCC--A-TG-TCAC-TTTcga
gi|11 : aAGAATGGAAATA--TA---------AAATTTA-GCTCAACACATG-TCT--A-TG-CCCC-CTTaaga
gi|12 : AAAATGCTAATA--CA---------AAATTCA-GCTCAAAACGTG-TCC--A-TG-TCCC-GTTtc
gi|13 : aAAATACAG-TA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCA-TTT
gi|14 : tacAAAATGCAAATA--TA---------GAATTTA-GCTCAGAAAGTG-TCC--A-TG-TCCC-TTT
gi|15 : AAATGCAAATA--TG---------AAATTTA-GCTCCAAACGTA-TCC--A-TG-TTCC-TTT
gi|16 : AAAT-CAAATA--TA---------AAATTTA-GCTC-AAATGTG-TCC--ATTG-TCCC-TTa
gi|17 : atAAATGCAAGAA--TA---------AAATTTA-GCTTAGAACGTG-TCC--A-TG-TCCT-TTT
gi|18 : AAATGCAAATA--TA---------AA-TTAA-GCTCAAAACGTG-CCC--A-TG-CCCC-TTT
gi|19 : ATA--TA---------AAATTTA-GCTCAAAACCTA-TCC--A-TG-TCCC-TTTa
gi|2 : agaaatAAAATGCAAATA--TA---------AAATTCA-GTCAAAAATGTG-TCC--A-TG----C-TTTaa
gi|20 : cattaAAATGCAAAGA--TA---------A--TTTA-GCTGAAAACGTG-TCC--T-TG-TACA-TTTtctctt
gi|21 : tAAAATGCAA-TA--TC---------A--CTTA-GCTCAAAACATG-TCC--A-TG-TCCC-TTa
gi|22 : aTGCAAAAA--TG---------AAATTTA-GCTCAAAACGTT-CTC--A-TG-TCCC-TTT
gi|23 : GCAAGTA--TC---------AAATTTA-GCTCACAACGTG-TCC--A-TG-TCCC-a
gi|24 : TTTA-ACTCAAAACGTG-TCC--A-TG-TCCC-TTT
gi|3 : AAAATGCAATTAA-TA---------AAATT-A-TCTCAA--CGTG-TCC--A-TG-TCCC-TTTacg
gi|4 : aacattaAAAATGCAAATA--TA---------AAATCTA-CCCCAGAATGTG-TCC--A-TG-TCCT-TCTaa
gi|5 : acattaAAAATGCAAATA--TA---------ACATTTT-GCATAAAACGTG-TTC--A-TA-TCCC-
gi|6 : aaacattaAAAATGCATACA--TA---------AAATTTA-GCGCAAAACGAG-TCC--A-TG-TCCC-TTT
gi|7 : attaAGTGCAAATACTTA---------AAATTCAAGCTCAAAACGTGCCCC--A-TGATCCC-TTTa
gi|8 : --TA---------AAATTTA-GCTCAAAATGTG-TCCATA-TG-TTCC-TTTaa
gi|9 : acttaactcAAAATGCAAATA--TG---------AAATTTG-GCTCCAAATGTG-TCC--A-TG-TCCA-TTaaa
Alignments
lowQualScore : 44 777777777 1 1 22 1 1 1
lowQualScore : .. ......... . . .. . . .
lowQualScore : 11 000000000 7 7 33 7 7 7
consensus : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
Reference ( family-670 ) : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
gi|1 : AATGCAAACA--TACTATATAACAACTTTA-GCTCAAA-CGTG-TCC--A-TG-TCTCATTT
gi|10 : AAAATGCAAATA--TG------------TTTA-ACTCAAAACGTG-TCC--A-TG-TCAC-TTTcga
gi|11 : aAGAATGGAAATA--TA---------AAATTTA-GCTCAACACATG-TCT--A-TG-CCCC-CTTaaga
gi|12 : AAAATGCTAATA--CA---------AAATTCA-GCTCAAAACGTG-TCC--A-TG-TCCC-GTTtc
gi|13 : aAAATACAG-TA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCA-TTT
gi|14 : tacAAAATGCAAATA--TA---------GAATTTA-GCTCAGAAAGTG-TCC--A-TG-TCCC-TTT
gi|15 : AAATGCAAATA--TG---------AAATTTA-GCTCCAAACGTA-TCC--A-TG-TTCC-TTT
gi|16 : AAAT-CAAATA--TA---------AAATTTA-GCTC-AAATGTG-TCC--ATTG-TCCC-TTa
gi|17 : atAAATGCAAGAA--TA---------AAATTTA-GCTTAGAACGTG-TCC--A-TG-TCCT-TTT
gi|18 : AAATGCAAATA--TA---------AA-TTAA-GCTCAAAACGTG-CCC--A-TG-CCCC-TTT
gi|19 : ATA--TA---------AAATTTA-GCTCAAAACCTA-TCC--A-TG-TCCC-TTTa
gi|2 : agaaatAAAATGCAAATA--TA---------AAATTCA-GTCAAAAATGTG-TCC--A-TG----C-TTTaa
gi|20 : cattaAAATGCAAAGA--TA---------A--TTTA-GCTGAAAACGTG-TCC--T-TG-TACA-TTTtctctt
gi|21 : tAAAATGCAA-TA--TC---------A--CTTA-GCTCAAAACATG-TCC--A-TG-TCCC-TTa
gi|22 : aTGCAAAAA--TG---------AAATTTA-GCTCAAAACGTT-CTC--A-TG-TCCC-TTT
gi|23 : GCAAGTA--TC---------AAATTTA-GCTCACAACGTG-TCC--A-TG-TCCC-a
gi|24 : TTTA-ACTCAAAACGTG-TCC--A-TG-TCCC-TTT
gi|3 : AAAATGCAATTAA-TA---------AAATT-A-TCTCAA--CGTG-TCC--A-TG-TCCC-TTTacg
gi|4 : aacattaAAAATGCAAATA--TA---------AAATCTA-CCCCAGAATGTG-TCC--A-TG-TCCT-TCTaa
gi|5 : acattaAAAATGCAAATA--TA---------ACATTTT-GCATAAAACGTG-TTC--A-TA-TCCC-
gi|6 : aaacattaAAAATGCATACA--TA---------AAATTTA-GCGCAAAACGAG-TCC--A-TG-TCCC-TTT
gi|7 : attaAGTGCAAATACTTA---------AAATTCAAGCTCAAAACGTGCCCC--A-TGATCCC-TTTa
gi|8 : --TA---------AAATTTA-GCTCAAAATGTG-TCCATA-TG-TTCC-TTTaa
gi|9 : acttaactcAAAATGCAAATA--TG---------AAATTTG-GCTCCAAATGTG-TCC--A-TG-TCCA-TTaaa
blockSeqs : CT . A C AT T A .
blockSeqs : A . . . . . . .
blockSeqs : . . . . . . . .
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blockSeqs : . . . . . .
blockSeqCons : *********
originalCons : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
finalCons : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
Alignments
lowQualScore : 44 777777777 1 1 22 1 1 1
lowQualScore : .. ......... . . .. . . .
lowQualScore : 11 000000000 7 7 33 7 7 7
consensus : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
Reference ( family-670 ) : AAAATGCAAATA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCC-TTT
gi|1 : AATGCAAACA--TACTATATAACAACTTTA-GCTCAAA-CGTG-TCC--A-TG-TCTCATTT
gi|10 : AAAATGCAAATA--TG------------TTTA-ACTCAAAACGTG-TCC--A-TG-TCAC-TTTcga
gi|11 : aAGAATGGAAATA--TA---------AAATTTA-GCTCAACACATG-TCT--A-TG-CCCC-CTTaaga
gi|12 : AAAATGCTAATA--CA---------AAATTCA-GCTCAAAACGTG-TCC--A-TG-TCCC-GTTtc
gi|13 : aAAATACAG-TA--TA---------AAATTTA-GCTCAAAACGTG-TCC--A-TG-TCCA-TTT
gi|14 : tacAAAATGCAAATA--TA---------GAATTTA-GCTCAGAAAGTG-TCC--A-TG-TCCC-TTT
gi|15 : AAATGCAAATA--TG---------AAATTTA-GCTCCAAACGTA-TCC--A-TG-TTCC-TTT
gi|16 : AAAT-CAAATA--TA---------AAATTTA-GCTC-AAATGTG-TCC--ATTG-TCCC-TTa
gi|17 : atAAATGCAAGAA--TA---------AAATTTA-GCTTAGAACGTG-TCC--A-TG-TCCT-TTT
gi|18 : AAATGCAAATA--TA---------AA-TTAA-GCTCAAAACGTG-CCC--A-TG-CCCC-TTT
gi|19 : ATA--TA---------AAATTTA-GCTCAAAACCTA-TCC--A-TG-TCCC-TTTa
gi|2 : agaaatAAAATGCAAATA--TA---------AAATTCA-GTCAAAAATGTG-TCC--A-TG----C-TTTaa
gi|20 : cattaAAATGCAAAGA--TA---------A--TTTA-GCTGAAAACGTG-TCC--T-TG-TACA-TTTtctctt
gi|21 : tAAAATGCAA-TA--TC---------A--CTTA-GCTCAAAACATG-TCC--A-TG-TCCC-TTa
gi|22 : aTGCAAAAA--TG---------AAATTTA-GCTCAAAACGTT-CTC--A-TG-TCCC-TTT
gi|23 : GCAAGTA--TC---------AAATTTA-GCTCACAACGTG-TCC--A-TG-TCCC-a
gi|24 : TTTA-ACTCAAAACGTG-TCC--A-TG-TCCC-TTT
gi|3 : AAAATGCAATTAA-TA---------AAATT-A-TCTCAA--CGTG-TCC--A-TG-TCCC-TTTacg
gi|4 : aacattaAAAATGCAAATA--TA---------AAATCTA-CCCCAGAATGTG-TCC--A-TG-TCCT-TCTaa
gi|5 : acattaAAAATGCAAATA--TA---------ACATTTT-GCATAAAACGTG-TTC--A-TA-TCCC-
gi|6 : aaacattaAAAATGCATACA--TA---------AAATTTA-GCGCAAAACGAG-TCC--A-TG-TCCC-TTT
gi|7 : attaAGTGCAAATACTTA---------AAATTCAAGCTCAAAACGTGCCCC--A-TGATCCC-TTTa
gi|8 : --TA---------AAATTTA-GCTCAAAATGTG-TCCATA-TG-TTCC-TTTaa
gi|9 : acttaactcAAAATGCAAATA--TG---------AAATTTG-GCTCCAAATGTG-TCC--A-TG-TCCA-TTaaa