lowQualScore : 2222222222222 111111111111111 1111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 1 4 2222222222222 22 000000000000000 1 1 222 1 4 11 999999 1 222 22 6666 55 7777777777 22 1 4 1 1 7777777777 1 2 11 1111 222 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333 2222 11 3333 11 111111 1 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1 2222 11 555555555555555 1111 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 5555555 2222 3333 44444 11 1 4444444444444444444444444 9999999999999
lowQualScore : 5 6 7 5 6 3 0 2 0000000000000 33 666666666666666 7 0 6 3 000 3 0 2 33 2 6 222222 6 5 333 11 2222 6 55 5555555555 6 11 6 7 6 0 3 3 3 7 7 3333333333 0 0 55 5555 222 6 3 66 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 7 9 6 2222 8888 0 33 4444 8 8 1 22 444444 1 000 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 2 5 6 6 3333 7 99 999999999999999 6 2222 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 2 2 0 2222222 4 2 3333 3 6666 66666 88 5 2222222222222222222222222 6 6 6 6 0000000000000
lowQualScore : . . . . . . . . ............. .. ............... . . . . ... . . . .. . . ...... . . ... .. .... . .. .......... . .. . . . . . . . . . .......... . . .. .... ... . . .. . ....................................................................................................... . . . . .... .... . .. .... . . . .. ...... . ... . .................................................................................................................................................................................................................................................................................................................................................................................................................................. .. . . . . .... . .. ............... . .... . .................................................................................................................................... . . . . ....... . . .... . .... ..... .. . ......................... . . . . .............
lowQualScore : 0 0 0 0 0 0 0 5 0000000000000 00 000000000000000 0 5 0 0 000 3 0 5 00 5 0 000000 0 0 000 00 0000 0 00 0000000000 0 00 0 0 0 0 0 3 3 3 3 2222222222 4 0 44 4444 000 4 0 44 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 3 0 0 3333 3333 7 88 0000 2 8 4 88 000000 0 777 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 00 5 0 0 0 5555 3 33 333333333333333 0 3333 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 5 5 5 5555555 0 5 5555 0 5555 55555 00 0 0000000000000000000000000 0 0 0 0 0000000000000
consensus : TGTACCGTTTTTCTAGCCTATTGGTGTATTTGNCGGA-GAACTGTAANCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACATTATGTATGTNNATTTCCATGTCTTGTTTTGCTGCNGCGANTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTNTTCTTGCACTTCGNNTTACATTTTTGTCTTGTTGTNAGTATTTACTTCTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTATGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTNTACCTCTA-TCTGAAA-GGATCTTAACGTTGTAAC--TTGTNGGTTTTTCGAGTTTGTTGATGTC---TAATGGTGGNNNTCTTTGNTCTTTTCTC-TTGGCTTTACGGAGTTTTAACTTNAGTTT--ACGTTCANTC-TCA-CTAGGGAGTGATCGCTACCA--ATGTCTGCACC-T-T--TTTG---TCACTACACCCAGCAGACTACTTCTCCATCTCCCGTTGAT-ATTACGTGATC----AAT--CTGGTTT-CTGGTTTTACCGTCTGGTGATNTCCACGTTGNTTTGTGGAT--TTCCTTGTG-NTGGA-ANANTG---TTCCGCCAATGACC-GGT--TCTCACA-AA--TG-CCGAG-------CC---TGT-TTC--CATT-GTC----ATT------AAT--TAT-T-------CC-ATTTCCNTG-TTTTCCCATTA---CCTG-TT--CCTTT--AT-CATTGATCNA-TC--CNACCTCGGCATTTAGGTCNCCCATAATGTTNA---CA--ATACGNNNTGNCATAGTGTGTCCATCCACNACGCTCTCTGNAGCTNCTCATAGAAAACGNNTCTTT-TCGTCTTCTTCAGCATCTTCAGNNTGGTGCGTAACAAACTATTATTGTGAGTTTGGCAAANGCNGAGTTGTATCTGGCTTTAAGTAATTCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTT-CTTGTNTNNNCCTCTTTNGTTGTTATCAAGGCNACTCCTCTACTA-TGGTG--CA-CNTT----TCTTCCTGAGTANAACATCTGATGACC---TGAAG-TAG--ATT------T---C---TCG---CCGT--CCA----GTCCGCCTTGTTTCGCTGACTCCTAAGAGATCTAGCTTGNAGTTTTCCATTTCTCTAACTACTTG-G-C-AGT----TCTCCTGTCTNGTAGANGGCNCGGACATTTCAGCNGCNAACCCCACGTANTNNCTNTTGGTTCGGAGGATGTCNAGTNCCCGGGCTGNCAGCTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCT
Reference ( gi|1 ) : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGA----------GAGTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGAC--TATTTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGTAACGGTTGTTGGTTTTTTGAGTTTGTGTATGTC---TAATGGTGGATTTCTTTGGTTTTCCATC-TTGGCTTT------TCTTAACTTGAGCTT-GATGTTTAATC-TCA-CTAGGAAATGATTACTGCCA--GCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTCCATTTCTTGTTAACCATTACATGATC----AGT--CTGGTTTGCT-GTCTTCCCGTCTGGTGACGTCCAGGTTAATTTGTGTAT--TTCCTTGTG-GTGGA-ATATTG---TTCCACCAATAACCAGGT--TCTCACAAAAATTG-ACAAA-------CC---TAT-TTC--CATT-GTC----GTT------GAT--TGT-T-------CC-ACAACCTTG-TTTTCCCATGA---CTTG-TT--CCTTGCCAT-CATTGATCGA-TC--CTACTTTGGCATTGGAATCTCCCATGATGATGA---CA--AT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT--------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCCTTG-GT----CTTCTTGGTTGTGATTAGGTCAACTCCTCTACTG-TGGTGTTCATCATT----TCTTCCTGAATAGATTATGTGATGACC---TGTAGCTAG--ATT------T---C---TTG---CTAT--CCT----GTCCATCGTGTTTCACAGATGCCGAGTATTTCTAGGCTGTAGTTTTCCATCTCCTGGATGACTTGTG-C-AATC---TTTCCTGTTTGGTAGAGGGTGCGTACATTCCAGCAACCAACTCTATATACTGTCTTTTGG-GTTAAGGATGTCT-ACATTTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCTTTTCCCGGATCTATTT
gi|4 : TGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTA
gi|13 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACA----------TAATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT-TT---ATGCGGTT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAAC---------GTTGTTGGTTCTTTGAGTATGCGTATGTC---TAATTGTCGATTTCTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGCTAT---------TGGCTCTTTGATTTTGCTTAAGTC---TAAATGTGGATTTCTTGGTTTTTCCTTCATTAGCTT
gi|5 : gaTCTA-GTTGGAA-AG--CT---CGTT-TAAC--TTGT-GGTTTTTC-AGTTTGTTGATGTC---AAGTGGTGGTGGTCTTTGGTCTTTTCTC-TTGGCTTTACAGAGTTTTAACTTTAGTTT---TG--CAA---TCA-CTAGGGAGTGATCGCTACTA--ATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTCCATCTCCTGTTGATGATTATATGATC----AAT--TTGGTTT-CTGGTTTTATTGTCTGTAGAATTCCATGTTGTTTTGTGGAT--GTCCTTATGCATAAA-A-ATGG---TTCTGCCAA--------T--CCTGACAGAAGGTG-CTCAG-------TC---GGT-CTC--CATT-GTC----ATT------ACTAATATCT-------CC-CTTTCCTTG-CTATCCCATTATGTTTTA-TTTCCCTTG--AT---TTTATCT--TC--CAACCTTGGTATTGAGGTCTCC--TAATGTTAA---CA--A
gi|8 : caggattgaaaatcggttgcgaattCGTTG-AAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGG---TCTTTGATCTTTTCTC-TTGGCCTTACGGAGTTTTAAATTCAGTTT---TG-CCAGT----A-CTAGGGAGTGATCGCTACCAATGTAT--GCACC-T-gacctcacggcgtggtgtttcatctacta
gi|2 : caggactgaaaatcggttgtgaaattccagttggaaagctTTGTGGGGTTTTC-AGTTTGTTGATGTC---AAGTGGTGGTGGTCTTTGATCTTTTCTC-TTGGCTTT-----------A-TGGAGTTTTAACATTTG-TCAGCA-CTAGGGAGTGATCGCTACCA--ATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTCCATCTCCTGTTGA---TTACATGATG----AAT--TTGGTTT-CTGGTTTTATCGTCTGGAGAATTCCATGTTGCTTTGTGGAT--GTCCATGTG-CTTAA-AGATGG---TTCCGCCAATCACCAAATTGTTTCCC------TG-TCGAT-------C--------TTCGTCATT-ACT----AAT------ATT--TAT-C-------CC-ATTCCTTCG-CTGTCCCAT-----TCTGTTT--TCTTTCCCTAGATTG-TCTA-TT--CAACCTTGG--------TCTCC--TAATGTTTA---CA--ATACATCATGGCATAGTGT-TTCATCCATTACGTTT--TGCAGCTGTTCATAG--AATGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTCGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAG-----CTTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTA-TGG----CAGTATTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTA--TAGTCATT------TGGAC---CCA---TT-T--CCA----GTCCATCTTGTTTCGCTGACTCCTAAGAGATCTAGCTTGTAGTTTTCCATTTCTCTAACTACTTG-G----------------GTCTGGTAGAGGGTCCG-------CAGCAGCAAACTCCATGTAA-GGCTTTTGG-TCGAAGGATATCC-GTTCTCGGGCTGGCAACtgtgttgcagactatacttcaccaatttggtttctggttttacagtctcatgagtctggagaatttcatg
gi|7 : ccaggactgaaaatcggtagcgaactttctagttggaaacctcgttaatTTTGTTCCTCTGCC-TTA-CTTT------CATCAGCTT---TTT-TATGTTTATCC-TCATCTG-----TGGTTACTGCCT--ACATCAGCACC-T-T--TCATCACTCT------------GATAACCTC-ATATGTCCCGATA-TCAGTACGTGATCTACCAGTATCTGTTTTTCC-ATTCTCCTATCTGGTGATGTCCACATTGTCTTGTGGAC--CTCTTTGTG-AAGGA-ATAATAAGTTTCC----GTGATCTGG------CACA-----TG-CCCAG-------TC---TTT-CAC--CATT-GTC----CTTTTTCTCTAT--TAC-T-------CC-ATA----TG-TCTT------A---CCTG-TT--TATT---AT-C--TG--CG---C--CGACCTCAGCATTTAAGTCACCCATcgt
gi|3 : --CTGGTTCATT-GCATGGCCATCTGGTGATGT------TGATTTGTGGATAATT--TTGTA-TTGGG-AGAAT----TTGC-----------------CTCCCAAAAA-----CAAA-------CT---TAT-TTC--TTTTAGTCTTCCGCT-------AT--TGT-TTTGGACACC-ACTGTCATA-TTTTCCCATTT---CGTA-TT--CTTTTTAAT-T-TTGCTTAAGTCATCTATT---GTACTTAGATCACCCAACATAAGGAGTGCATCAT--GAACTGC-----TGTGTCC-TCTACA--GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT----TCCTCATCTGCca
gi|15 : GTCGGGTGATATCCAAGTGGCCTTGTGTAT--TCTCTTGTGAGTGAAGATACTG-----CCACCAGTGATGAGGT--tttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|9 : TCCATGTTGATT-GTGGAG--TTCCTTATG--TGGA-AAATTG---TACCTCCAATGACTTTGT--TCTCATA-----TGCACAAAATAGTTTCCAGGTGTGTTC--CTTT-TTC----ATT-------AT--TTT-T-------CCTAC-TCCATGTTTTTCCCATAA-----TG-T----CTT----T-CA-TAACCGA------TGCTTTGGCA
gi|6 : tgaaTCTTT-TCATCTTCTCCAGCATCTTCAGTT-GGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAGCAGAGTTGTATCTGGCTTTAAGTAAT-CTCTCACTTACAGGTTTCCATTCTAGTAAGCGTT--TTG-TTTAC-CTCTTTGGTTGTTATCAAGGCA-CTCTGCTACTA-TGGTGGTCATCTGA----TCTTCCTGAGTACAACATCTGATGACC---TGATGTTAG---TT------G---T---TTGGGTCCATTCCCA----GTCCACCTTGCTTTGCTGACTCCTAAGAGATCAAGCTTGAAGTTTTCCATTTCTCTAACTACTTGGGTC-AGT----TTTCCTGTCT
gi|3 : aCCTATACTACTGCTGT----CGTT----TCTTCCAGAGTAAATTATCTGATGACA---TGAAA--AG--ATTGCGAGCT---CCGTTTT---CGGT--CCTTGTTGTACGCCATGTACCAAACAT-CTGAATGTTG-TAC-CTGCCATTTTCCATT------ATAA----TG-CAAATCAATTCTCTTGTCTCGTAGATAGCACAGACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGTCTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CAGTCCATCTACTTTCGCTCACTCCTAGGAGATGGAAGTTGAATCGATTCATCTCAGATGTTACCCGTGCCAGCTTGCCTGTCTCGTA
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 888888888888 1 222 1 11 11 8888888888 2 11 111 444444444 1 111 555555555555 3333333333333333333333333 444444444444 1111111 11 11 111 888888888888888888888888888888888888 11 33333333333333333333 111 444444444444444444444444444444444 1 111 11 22222 11111 1 1 222 11111111 1 222 111111111111 11 3333333333333 1 1 1 55555555555 66666666666666666666666666666666 11 2222222222 111 111 2222222222222222 1 1111 1 111 222 333 1 1 2 1 222
lowQualScore : 3 4 2 1 3 1 3333333333333 444444444444 0 1 1 6 0 7 1 22 1 0 333 3 2 4 2 2 4 88 88 7777777777 2 4 0 1 88 11 0 111 000000000 7 5 2 4 333 1 99 0 888 444 0 99 333333333333 8 0 1 7777777777777777777777777 1 1 99 8 3 4 000000000000 4 9999999 6 6 1 44 7 1 77 22 5 1 1 000 666666666666666666666666666666666666 1 6 6 11 6 1 88888888888888888888 0 111 1 6 111111111111111111111111111111111 1 222 8 00 6 7777 1 44444 4 1 7777777 22222 5 2 5 2 333 0 0 6 1 0 1 66666666 0 6 0 666 444 1 4 1 3 777777777777 7 44 5555555555555 7 1 4 3 0 0 33333333333 1 4 4 66666666666666666666666666666666 77 8 8 5555555555 1 1 1 3 1 3 111 1 777 4444444444444444 1 1 11 5 4 11 1 0 0 11 0000 1 3 7 999 000 3333 77 3 555 5 2 4 4 5 2 0 4 3 5 111
lowQualScore : . . . . . . ............. ............ . . . . . . . .. . . ... . . . . . . .. .. .......... . . . . .. .. . ... ......... . . . . ... . .. . ... ... . .. ............ . . . ......................... . . .. . . . ............ . ....... . . . .. . . .. .. . . . ... .................................... . . . .. . . .................... . ... . . ................................. . ... . .. . .... . ..... . . ....... ..... . . . . ... . . . . . . ........ . . . ... ... . . . . ............ . .. ............. . . . . . . ........... . . . ................................ .. . . .......... . . . . . . ... . ... ................ . . .. . . .. . . . .. .... . . . ... ... .... .. . ... . . . . . . . . . . ...
lowQualScore : 0 0 5 0 3 0 3333333333333 777777777777 7 0 0 7 0 3 0 00 0 7 333 3 5 0 5 5 0 55 00 5555555555 5 0 0 0 66 22 8 888 777777777 5 0 5 0 000 0 22 8 888 000 8 44 222222222222 0 8 0 6666666666666666666666666 4 4 22 0 2 6 222222222222 6 0000000 7 7 5 11 6 0 99 33 7 0 0 000 444444444444444444444444444444444444 0 3 7 77 7 8 33333333333333333333 3 000 0 7 888888888888888888888888888888888 3 222 8 88 4 0000 0 66666 0 0 5555555 22222 0 0 5 0 222 7 7 7 0 7 0 77777777 0 5 8 888 888 2 2 2 5 000000000000 3 77 0000000000000 3 0 0 2 0 0 22222222222 0 0 0 88888888888888888888888888888888 44 0 0 2222222222 0 4 0 2 0 2 888 0 444 4444444444444444 0 0 77 0 0 77 0 7 7 33 3333 0 3 3 333 333 0000 77 0 000 5 5 0 0 5 5 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT---------GAATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTT--AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTTCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTGANNTCCACGTTGNTTTGTGGAT--TTCCTTGTG-NTGGA-ANATTG---TTCCGCCAATGACC--------TTCTCA------CAAAA----TGCCGAGCCT-GTTTCCATT-GTCNTTANT--TAT-T----------CCATT--NCCNTGTTTT-CCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCNATCCGACCT-TGGCATTNAGGTCTCCCA---TAATGNTNACAATACGNCATGNCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-GC-GAGTTGTATCTGGCTTTAAGTAATTCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTT-TTGT-TG-ACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTA-TGGT-G-TCA-CGTTG-TCTTCCTGAGTANANCATCTGATGACCTGANGCTA--G--ATTT---CTNG--C--CGT--C--CAGTCCATCTTGTT-T-CGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGCG-ACATTCCAGCAACCAACTCTATATACTGTCTTTT-GGTTC-GAGGATGTCNAGCGTTCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTTTTCTAGCCTATTGGTGTATTTGNCGGA-GAACTGTAANCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACATTATGTATGTNNATTTCCATGTCTTGTTTTGCTGCNGCGANTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTNTTCTTGCACTTCGNNTTACATTTTTGTCTTGTTGTNAGTATTTACTTCTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTC----------TTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTATGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTNTACCTCTA-TCTGAAA-GGATCTTAACGTTGTAAC--TTGTNGGTTTTTCGAGTTTGTTGATGTCTAATGGTGGNNNTCTTTGNTCTTTTCTC--TTGGCTTTACGGAGTTTTA---ACTTNAGTTT-ACGTTCANTCTCA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-T--TTTG---TCACTACACCCAGCAGACTACTTCTC-CATCTCCCGTTGA-T-AT---TACGTGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTGATNTCCACGTTGNTTTGTGGAT--TTCCTTGTG-NTGGA-ANANTG---TTCCGCCAATGACC-----G-GTTCTCA------CAAA-----TGCCGAGCCT-GTTTCCATT-GTCATTAAT--TAT-T----------CCATT--TCCNTGTTTT-CCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCNATCCNACCT-CGGCATTTAGGTCNCCCA---TAATGTTNACAATACGNNNTGNCATAGTGTGTCCATCCACNACGCTCTCTGNAGCTNCTCATAGAAAACGNNTCTTT-TCGTCTTCTTCAGCATCTTCAGNNTGGTGCGTAACAAACTATTATTGTGAGTTTGGCAAANGCNGAGTTGTATCTGGCTTTAAGTAATTCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTCTTGTNTNNNCCTCTTTNGTTGTTATCAAGGCNACTCCTCTACTA-TGGT-G--CA-CNTT--TCTTCCTGAGTANAACATCTGATGACCTGAAG-TA--G--ATTT---CTCG--C--CGT--C--CAGTCCGCCTTGTT-T-CGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TCTCCTGTCTNGTAGANGGCNCGGACATTTCAGCNGCNAACCCCACGTANTNNCTNTT-GGTTCGGAGGATGTCNAGTNCCCGGGCTGNCAGCTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGA----------GAGTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGACTAT--TTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGTAACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTA---ACTTGAGCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTC-CATTTCTTGTTAACC-AT---TACATGATC----A--GTCTGGTTTGCT-GTCTTCCCGTCTGGTGACGTCCAGGTTAATTTGTGTAT--TTCCTTGTG-GTGGA-ATATTG---TTCCACCAATAACCA----G-GTTCTCA------CAAAAAT--TGACAAACCT-ATTTCCATT-GTCGTTGAT--TGT-T----------CCACA--ACCTTGTTTT-CCCATGACTTGTT-------C-CTTGCC--ATC---AT-TGATCGATCCTACTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT--------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCCT---TGGTCTTC-TTGGTTGTGATTAGGTCAACTCCTCTACTG-TGGT-GTTCATCATT--TCTTCCTGAATAGATTATGTGATGACCTGTAGCTA--G--ATTT---CTTG--C--TAT--C--CTGTCCATCGTGTT-T-CAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGCGTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT--AAGGATGTCTA-CATTTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG---------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT---TT-ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACG---------CTATTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT----------AATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : --CAGTCCATCTACTT-T-CGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|15 : GTCGGGTGATATCCAAGTGGCCTTGTGTAT--TCTCTTGTGAGTGAAGATACTG-----CCACCAGTGA
gi|2 : TCTA-GTTGGAA---ACCT---CGTT--AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTA---AC----ATTT-G---TCAG---CA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTC-CATCTCCTGTTGA-T------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAGAATTCCATGTTGCTTTGTGGAT--GTCCATGTG-CTTAA-AGATGG---TTCCGCCAATCACCAAATTG-TTTCCC----------------TGTCGATCTTCGT---CATT-ACTAATATT--TAT-C----------CCATT--CCTTCGCTGT-CCCATT--CTGTT-------TTCTT--T--CCCTAGAT-TG-TCTATTCAACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTCGAGTTGTATCTGGCTTTAAGTAAT-CTCTCACTTACAGGTTTCCATTCTAGTAAGC----TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTA-TGGCAG--TA-TTCTGATCTGCCTGAGTATAACATCTGATGACCTGATG-TATAGTCATTTGGACCCA--T--T-T--C--CAGTCCATCTTGTT-T-CGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCCG-------CAGCAGCAAACTCCATGTAA-GGCTTTT-GG-TCGAAGGATATCC-GTTCTCGGGCTGGCAACtgaggt
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTGAT------GTTGATTTGTGGATAATT--TTGTA-TTGGG-AGAAT----TT--GCC----------------TCCCA------AAAA--------CAAACTT-ATTTCTTTTAGTCTTCCGC--TAT-TGTTTTGGACACCACT--GTCATATTTT-CCCATTTCGTATT-------C-TTT--TTAATT----T-TGCTTAAGTC-ATCTATTGTACTTAGATCACCCAACATAAGGAGTGCATCATGAACTGC-----TGTGTCC-TCTACA--GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTG-TTGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCT-G--T--CGTT--TCTTCCAGAGTAAATTATCTGATGACATGAAA--A--G--ATTG---CGAG--CTCCGT--TTTCGGTCC---TTGTTGTACGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAGACATTTTAACTACCAACCCTACATACTTTTTGTT-AGTTTTGAGAATGTCGAATGTCTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTC----------TTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AG--CT---CGTT-TAAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTA---ACTTTAGTTT----TGCAA--TCA-CTAGGGAGTGATCGCTACTAATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTC-CATCTCCTGTTGA-TGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAATTCCATGTTGTTTTGTGGAT--GTCCTTATG-CATAA-AAATGG---TTCTGCCAA-------------TCCTGA------CAGAAGG--TGCTCAGTCG-GTCTCCATT-GTCATTACTAATATCT----------CCCTT--TCCTTGCTAT-CCCATTA--TGTTTTATTTCC-CTT--G--AT-----T-TTATCT-TCCAACCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAGCAGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTT-TTGTTT--ACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTA-TGGT-GGTCA-TCTGA-TCTTCCTGAGTACAACATCTGATGACCTGATGTTA--G--TTGT---TTGGGTC--CATTCC--CAGTCCACCTTGCT-T-TGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTTGTTC----CTC--T--GCCTTAC----TTTCATCAGCTTT--TTT-ATGTTTATCCTCATCT-----GTGGTTACTGCCTACATCAGCACC-T-T--TC-A---TCACT--------CTGATAAC--CTCATATGTCCCG---A-T-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTGATGTCCACATTGTCTTGTGGAC--CTCTTTGTG-AAGGA-ATAATAAGTTTCCG----TGA-----------TCTGG------CACA-----TGCCCAGTCT-TTCACCATT-GTCCTT--T--TTC-T----------CTATTACTCCATATGTC-----TTACCTG------------TT--T--ATT---ATCTG--CG--CCGACCT-CAGCATTTAAGTCACCCA---T
gi|8 : CGTTG-AAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTA---AATTCAGTTT--TG-CCAGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACC---T--TGTG---TT----------GCAGACTA----------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATGAca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTGA-ATCCATGTTGATT-GTGGAG--TTCCTTATG--TGGA-AAATTG---TACCTCCAATGACT-----TTGTTCTCATATGCACAAAATAGTTTCCAGGTGT-GTT-CCTTT-TTCATTATT--T-T-T----------CCTAC--TCCATGTTTTTCCCATAA--TG-T-------C-TTT--C--ATA---AC-CGATgtctggagaatttcatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 666666666666 1 222 1 11 11 4444444444 1 11 2222222222 1 111 33333333333333333 33333333333333333333333 444444444444 1111111 11 11111 9999999999999999999999999999999999999999 11 11111 333333333333 66666666666666666666666666666666666666666666 22222 111 1 1 111 111 1 11 5555555555555 2 1 2 1 4444444444444 22 11 33333333333333333 2222222222 111 111 2222222222222 2222 222 333 11 222 1 1 1 1 222
lowQualScore : 1 1 1 3 3333333333333 666666666666 3 6 0 7 3 333 3 1 1 1 1 1 88 88 0000000000 1 1 5 88 11 777 0000000000 7 5 1 1 333 99 0 888 444 77777777777777777 8 0 1 8 88888888888888888888888 1 1 99 8 3 000000000000 9999999 6 6 1 33 7 1 77 999 1 44444 1111111111111111111111111111111111111111 6 3 6 00 6 1 11111 2 111111111111 7 1 999 3 11111111111111111111111111111111111111111111 6 3 5555 1 44444 222 8888 1 4 5 5 666 6 1 333 1 0 1 0 1 6 88 4 4 1 1 3333333333333 7 3 0 2 4 6 6 6 3 0 9999999999999 1 1 1 00 33 77777777777777777 0 5555555555 1 1 1 3 1 3 111 1 777 3333333333333 0 1 44 4444 3 7 333 333 88 0 6 2 111 5 2 1 1 5 1 5 1 1 5 111
lowQualScore : . . . . ............. ............ . . . . . ... . . . . . . .. .. .......... . . . .. .. ... .......... . . . . ... .. . ... ... ................. . . . . ....................... . . .. . . ............ ....... . . . .. . . .. ... . ..... ........................................ . . . .. . . ..... . ............ . . ... . ............................................ . . .... . ..... ... .... . . . . ... . . ... . . . . . . .. . . . . ............. . . . . . . . . . . ............. . . . .. .. ................. . .......... . . . . . . ... . ... ............. . . .. .... . . ... ... .. . . . ... . . . . . . . . . . ...
lowQualScore : 0 0 0 3 3333333333333 777777777777 7 7 0 3 7 333 3 0 0 0 0 0 55 00 5555555555 0 0 5 66 22 000 8888888888 2 0 0 0 000 22 8 888 000 66666666666666666 0 8 0 0 22222222222222222222222 4 4 22 0 2 222222222222 0000000 7 7 5 11 6 0 99 111 0 66666 4444444444444444444444444444444444444444 3 7 7 88 7 0 77777 2 888888888888 5 0 333 3 00000000000000000000000000000000000000000000 7 7 4444 4 66666 222 5555 0 2 0 5 555 7 0 777 0 0 0 8 0 5 88 2 2 2 0 7777777777777 3 7 7 0 0 7 7 7 2 0 8888888888888 0 0 0 55 88 55555555555555555 8 2222222222 0 4 0 2 0 2 888 0 444 4444444444444 6 0 33 0000 7 3 000 333 33 7 7 5 000 5 5 0 0 5 0 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-A---------ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTGANNTCCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAAGATTG---TTCCGCCAATGACC--G----TTCT------CACAAAA--TG----CCGAGCCT-GT-TTCCATT-GTCNTTANT--TNT-T----------CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-ACCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAAT-CTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTA-TGGC-G-TCA-TNTTG-TCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--ATTTCGAG--C--CATTCC--CAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC-A-CGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACATGA---------ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTTCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTGANNTCCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGACC-------TTCT------CACAAAA--TG----CCGAGCCT-GT-TTCCATT-GTCNTTANT--TAT-T----------CCATTNCCNTG-T-TTTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCNATCCGACCT-TGGCATTNAGGTCTCCCA---TAATGNTNACAATACGNCATGNCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAATTCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTGACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTA-TGGT-G-TCA-CGTTG-TCTTCCTGAGTANANCATCTGATGACCTGANGC-TAG--ATTTCTNG--C--CGT--C--CAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTC-GAGGATGTCNAGCGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGA-GA---------GTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGACTAT--TTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGT-AACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTA---ACTTGAGCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTC-CATTTCTTGTTAACC-AT---TACATGATC----A--GTCTGGTTTGCT-GTCTTCCCGTCTGGTGACGTCCAGGTTAATTTGTGTAT--TTCCTTGTGGTGGAATATTG---TTCCACCAATAACCAGG----TTCT------CACAAAAATTG----ACAAACCT-AT-TTCCATT-GTCGTTGAT--TGT-T----------CCACAACCTTG-T-TTTCCCATGACTTGTT-------C-CTTGCC--ATC---AT-TGATCGATCCTACTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT---------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCC-TTGGTCTTCTTGGTTGTGATTAGGTCAACTCCTCTACTG-TGGT-GTTCATCATT--TCTTCCTGAATAGATTATGTGATGACCTGTAGC-TAG--ATTTCTTG--C--TAT--C--CTGTCCATCGTGTTTCAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGC-GTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT-AAGGATGTCTA-CAT--TTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG----------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT---TT-ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGC--T-A-------TTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT-A---------ATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : --CAGTCCATCTACTTTCGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|15 : GTCGGGTGATATCCAAGTGGCCTTGTGTAT--TCTCTTGTGAGTGAAGATAC---TGCCACCAGTGA
gi|2 : TCTA-GTTGGAA---ACCT---CGT--T-AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTA---ACATT-------TGT-CAG---CA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTC-CATCTCCTGTTGA-T------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAGAATTCCATGTTGCTTTGTGGAT--GTCCATGTGCTTAAAGATGG---TTCCGCCAATCACCAAATTGTTTCC------C--------TG----TCGATCTTCGT----CATT-ACTAATATT--TAT-C----------CCATTCCTTCG-C-TGTCCCATT--CTGTT-------TTCTT--T--CCCTAGAT-TG-TCTATTCAACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTC-GAGTTGTATCTGGCTTTAAGTAAT-CTCTCACTTACAGGTTTCCATTCTAGTAAGC-TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTA-TGGC-A-GTA-TTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTATAGTCATTTGGAC--C--CATTTC--CAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCC-G-------CAGCAGCAAACTCCATGTAA-GGCTTTTGGTCG-AAGGATATC---CGTTCTCGGGCTGGCAACtgaggt
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTGAT------GTTGATTTGTGGATAATT--TTGTATTGGGAGAAT----TT--GCC---------------TCC------CA-AAAA---------CAAACTT-AT-TTCTTTTAGTCTTCCGC--TAT-TGTTTTGGACACCACTGTCATA-T-TTTCCCATTTCGTATT-------C-TTT--TTAATT----T-TGCTTAAGTC-ATCTATTGTACTTAGATCACCCAACATAAGG-----AGTGCATCATGAACTGCTGTGTCC-TCTAC-A-GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTGT-TGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCT-G-TC---GTT--TCTTCCAGAGTAAATTATCTGATGACATGAAA---AG--ATTGCGAG--CTCCGT--TTTCGGTCCTTGTTGTA-CGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAG-ACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGT--CTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AGCTCGT----T--T-AAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTA---ACTTTAGTTT--TG--CAA--TCA-CTAGGGAGTGATCGCTACTAATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTC-CATCTCCTGTTGA-TGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAATTCCATGTTGTTTTGTGGAT--GTCCTTATGCATAAAAATGG---TTCTGCCAA------------TCCT------GACAGAAGGTG----CTCAGTCG-GT-CTCCATT-GTCATTACTAATATCT----------CCCTTTCCTTG-C-TATCCCATTA--TGTTTTATTTCC-CTT--G--AT-----T-TTATCT-TCCAACCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA-
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAG-CAGAGTTGTATCTGGCTTTAAGTAAT-CTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTA-TGGTGG-TCA-TCTGA-TCTTCCTGAGTACAACATCTGATGACCTGATGT-TAG--TTGTTTGGGTC--CATTCC--CAGTCCACCTTGCTTTGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTCCTC--T--GCCTTAC----TTTCATCAGCTTT--TTT-ATGTTTATCCTCATCT-----GTGGTTACTGCCTACATCAGCACC-T-T--TC-A---TCACT--------CTGATAAC--CTCATATGTCCCG---A-T-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTGATGTCCACATTGTCTTGTGGAC--CTCTTTGTGAAGGAATAATAAGTTTCCG----TGA----------TCTGG----CAC---A--TG----CCCAGTCT-TT-CACCATT-GTCCTT--T--TTC-T----------CTATTACTCCA-TATGTC---TTACCTG------------TT--T--ATT---ATCTG--CG--CCGACCT-CAGCATTTAAGTCACCCA---T
gi|8 : tttgCGT--TGAAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTA---AATTCAGTTT--TGC-CAGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACC-T-T-----G---T------GTT--GCAGACTA----------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATGAca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTGAA-TCCATGTTGATT-GTGGAG--TTCCTTATG-TGGAAAATTG---TACCTCCAATGACTTTG----TTCTCATATGCACAAAA--TAGTTTCCAGG--T-GTGTTCCTTT-TTCATTATT--TTT-C----------CTACT-CCATGTT-TTTCCCATAA--TGT----------CTT------TC---A--TAACCGAT---GCTT-TGGCAgtctggagaatttcatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 55555555555 1 1 222 11 11 4444444444 1 11 2222222222 1 111 33333333333333333 33333333333333333333333 444444444444 1111111 11 111 1111 99999999999999999999999999999999999999999 11 22222222222222222222 6666666666666666666666666666666666666666666666 22222 111 1 1 111 111 1 11 5555555555555 1 1 2 222222222222 11 11 1 1 11 2222222222 111 111 2222222222222 2222 1 333 11 222 1 1 1 1 222
lowQualScore : 1 1 1 3 3333333333333 77777777777 3 6 0 7 3 3 333 1 1 1 1 1 88 88 0000000000 1 1 5 88 11 777 0000000000 7 5 1 1 333 99 0 888 444 77777777777777777 8 0 1 8 88888888888888888888888 1 1 99 8 3 000000000000 9999999 6 6 1 55 6 1 000 7 3 2222 11111111111111111111111111111111111111111 6 3 6 00 6 1 11111111111111111111 7 11 999 1 9999999999999999999999999999999999999999999999 6 3 5555 1 44444 111 777 0 4 5 5 666 6 1 333 1 0 1 0 1 6 88 4 4 1 1 3333333333333 7 3 0 2 888 6 3 888888888888 1 1 1 77 33 0 0 1 0 33 77 0 5555555555 1 1 1 3 1 3 111 1 777 3333333333333 0 1 44 4444 3 7 3 999 88 0 6 2 111 5 2 1 1 5 1 5 1 1 5 111
lowQualScore : . . . . ............. ........... . . . . . . ... . . . . . .. .. .......... . . . .. .. ... .......... . . . . ... .. . ... ... ................. . . . . ....................... . . .. . . ............ ....... . . . .. . . ... . . .... ......................................... . . . .. . . .................... . .. ... . .............................................. . . .... . ..... ... ... . . . . ... . . ... . . . . . . .. . . . . ............. . . . . ... . . ............ . . . .. .. . . . . .. .. . .......... . . . . . . ... . ... ............. . . .. .... . . . ... .. . . . ... . . . . . . . . . . ...
lowQualScore : 0 0 0 3 3333333333333 77777777777 7 7 0 3 7 3 333 0 0 0 0 0 55 00 5555555555 0 0 5 66 22 000 8888888888 2 0 0 0 000 22 8 888 000 66666666666666666 0 8 0 0 22222222222222222222222 4 4 22 0 2 222222222222 0000000 7 7 5 00 3 0 777 5 7 7777 33333333333333333333333333333333333333333 3 7 7 88 7 0 88888888888888888888 5 77 333 0 2222222222222222222222222222222222222222222222 7 7 4444 4 66666 222 555 2 2 0 5 555 7 0 777 0 0 0 8 0 5 88 2 2 2 0 7777777777777 3 3 7 0 333 7 2 888888888888 0 0 0 00 88 0 2 2 0 88 55 8 2222222222 0 4 0 2 0 2 888 0 444 4444444444444 6 0 33 0000 7 3 3 000 33 7 7 5 000 5 5 0 0 5 0 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTGAN-TCCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGAC--C-----GTTCT------CACAAAA--TG----CCGAGCCT-GT-TTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGC-G-TCATCTTN-TCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTGANNTCCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAAGATTG---TTCCGCCAATGAC--C-----GTTCT------CACAAAA--TG----CCGAGCCT-GT-TTCCATT-GTCNT----TANT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGC-G-TCATNTTG-TCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTCCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGAG-----A-----GTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGAC--TATTTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGT-AACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTA---ACTTGAGCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTC-CATTTCTTGTTAACC-AT---TACATGATC----A--GTCTGGTTTGCT-GTCTTCCCGTCTGGTGACGTCCAGGTTAATTTGTGTAT--TTCCTTGTGGTGGAATATTG---TTCCACCAATAAC--CAG---GTTCT------CACAAAAATTG----ACAAACCT-AT-TTCCATT-GTCGT----TGAT--TGT-T-----CCACAACCTTG-T-TTTCCCATGACTTGTT-------C-CTTGCC--ATC---AT-TGATCGATCCTA-CTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT---------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCC-TTGGTCTTCTTGGTTGTGATTAGGTCAACTCCTCTACTGTGGT-GTTCATCATT-TCTTCCTGAATAGATTATGTGATGACCTGTAGC-TAG--AT-TTCTTG-C--TAT--CCTGTCCATCGTGTTTCAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGC-GTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT-AAGGATGTCT-ACAT--TTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG----------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT-TT---ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGC--T-A-------TTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : CAGTCCATCTACTTTCGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|2 : TCTA-GTTGGAA---ACCT---CGT--T-AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTA---ACATT-------TGT-CAG---CA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTC-CATCTCCTGTTGA-T------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAGAATTCCATGTTGCTTTGTGGAT--GTCCATGTGCTTAAAGATGG---TTCCGCCAATCAC--CAAATTGTT-T------CCC------TG----TCGATCTTCGT----CATT-ACTAA----TATT--TAT-C-----CCATTCCTTCG-C-TGTCCCATT--CTGTT-------TTCTT--T--CCCTAGAT-TG-TCTATTC-AACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTC-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGC-TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTATGGC-A-GTATTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTATAGTCAT-TTGGAC-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCC-G-------CAGCAGCAAACTCCATGTAA-GGCTTTTGGTCG-AAGGATATC---CGTTCTCGGGCTGGCAAC
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTGAT------GTTGATTTGTGGATAATT--TTGTATTGGGAGAAT----TT--GCC----------------TCC------CA-AAAA---------CAAACTT-AT-TTCTTTTAGTCTTCCGCTATTG-TTT-TGGACACCACTGTCATA-T-TTTCCCATTTCGTATT-------C-TTT--TTAATT----T-TGCTTAAGTC-A-TCTATTGTACTTAGATCACCCAACATAAGG-----AGTGCATCATGAACTGCTGTGTCC-TCTAC-A-GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTGT-TGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCTG-TCGTTT----CTTCCAGAGTAAATTATCTGATGACATGAAA---AG--AT-TGCGAG-CTCCGTTTTCGGTCCTTGTTGTA-CGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAG-ACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGT--CTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AGCTCGT----T--T-AAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTA---ACTTTAGTTT--TG--CAA--TCA-CTAGGGAGTGATCGCTACTAATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTC-CATCTCCTGTTGA-TGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAATTCCATGTTGTTTTGTGGAT--GTCCTTATGCATAAAAATGG---TTCTGCCAA-------------TCCT------GACAGAAGGTG----CTCAGTCG-GT-CTCCATT-GTCAT----TACTAATATCT-----CCCTTTCCTTG-C-TATCCCATTA--TGTTTTATTTCC-CTT--G--AT-----T-TTATCT-TCCAA-CCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA-
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAG-CAGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTATGGTGG-TCATCTGA-TCTTCCTGAGTACAACATCTGATGACCTGATGT-TAG--TTGTTTGGGTC--CATTCCCAGTCCACCTTGCTTTGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTCCTC--T--GCCTTAC----TTTCATCAGCTTT--TTT-ATGTTTATCCTCATCT-----GTGGTTACTGCCTACATCAGCACC-T-T--TC-A---TCACT--------CTGATAAC--CTCATATGTCCCG---A-T-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTGATGTCCACATTGTCTTGTGGAC--CTCTTTGTGAAGGAATAATAAGTTTCCG----TGA-----------TCTGG----CAC---A--TG----CCCAGTCT-TT-CACCATT-GTCCT----T--T--TTC-T-----CTATTACTCCA-TATGTC---TTACCTG------------TT--T--ATT---ATCTG--CG--CCGA-CCT-CAGCATTTAAGTCACCCA---T
gi|8 : tttgCGT--TGAAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTA---AATTCAGTTT--TGC-CAGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACC-T-T-----G---T------GTT--GCAGACTA----------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATGAca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTGAA-TCCATGTTGATT-GTGGAG--TTCCTTATG-TGGAAAATTG---TACCTCCAATGACTTT-----GTTCTCATATGCACAAAA--TAGTTTCCAGG--T-GTGTTCCTTT-TTCAT----TATT--TTT-C-----CTACT-CCATGTT-TTTCCCATAA--TGT----------CTT------TC---A--TAACCGAT---G-CTT-TGGCAgtctggagaatttcatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCGGGTGATATCCAAGTGGCCTTGTGTATTCTCTTGTGAGTGAAGATACTGCCACCAGTGATGAGGT
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 55555555555 1 222 1 11 11 4444444444 1 11 2222222222 1 111 33333333333333333 33333333333333333333333 444444444444 1111111 11111 111 1111 99999999999999999999999999999999999999999 11 1111 222222222222 6666666666666666666666666666666666666666666666 22222 111 1 1 111 111 1 11 5555555555555 1 1 2 3 1 1111 11 11 1 1 11 2222222222 111 111 2222222222222 2222 1 333 11 222 1 1 1 1 222
lowQualScore : 1 1 1 3 3333333333333 77777777777 3 6 0 7 3 333 3 1 1 1 1 1 88 88 0000000000 1 1 5 88 11 777 0000000000 7 5 1 1 333 99 0 888 444 77777777777777777 8 0 1 8 88888888888888888888888 1 1 99 8 3 000000000000 9999999 6 6 1 5 66666 6 1 000 7 1 2222 11111111111111111111111111111111111111111 6 3 6 00 6 1 4444 000000000000 7 11 999 1 9999999999999999999999999999999999999999999999 6 3 5555 1 44444 111 777 0 4 5 5 666 6 1 333 1 0 1 0 1 6 88 4 4 1 1 3333333333333 7 3 0 2 888 6 3 0 0 1 6666 1 1 1 77 33 0 0 1 0 33 3 0 5555555555 1 1 1 3 1 3 111 1 777 3333333333333 0 1 44 4444 3 7 3 999 88 0 6 2 111 5 2 1 1 5 1 5 1 1 5 111
lowQualScore : . . . . ............. ........... . . . . . ... . . . . . . .. .. .......... . . . .. .. ... .......... . . . . ... .. . ... ... ................. . . . . ....................... . . .. . . ............ ....... . . . . ..... . . ... . . .... ......................................... . . . .. . . .... ............ . .. ... . .............................................. . . .... . ..... ... ... . . . . ... . . ... . . . . . . .. . . . . ............. . . . . ... . . . . . .... . . . .. .. . . . . .. . . .......... . . . . . . ... . ... ............. . . .. .... . . . ... .. . . . ... . . . . . . . . . . ...
lowQualScore : 0 0 0 3 3333333333333 77777777777 7 7 0 3 7 333 3 0 0 0 0 0 55 00 5555555555 0 0 5 66 22 000 8888888888 2 0 0 0 000 22 8 888 000 66666666666666666 0 8 0 0 22222222222222222222222 4 4 22 0 2 222222222222 0000000 7 7 5 7 11111 3 0 777 5 0 7777 33333333333333333333333333333333333333333 3 7 7 88 7 0 2222 777777777777 5 77 333 0 2222222222222222222222222222222222222222222222 7 7 4444 4 66666 222 555 2 2 0 5 555 7 0 777 0 0 0 8 0 5 88 2 2 2 0 7777777777777 3 3 7 0 333 7 2 0 0 2 0000 0 0 0 00 88 0 2 2 0 88 2 8 2222222222 0 4 0 2 0 2 888 0 444 4444444444444 6 0 33 0000 7 3 3 000 33 7 7 5 000 5 5 0 0 5 0 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGAC--C-----GTTCT------CACAAAA--TG----CCGAGCCT-GT-TTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGG-TCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGAC--C-----GTTCT------CACAAAA--TG----CCGAGCCT-GT-TTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGC-G-TCATCTTNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGAG-----A-----GTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGACTAT--TTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGT-AACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTA---ACTTGAGCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTC-CATTTCTTGTTAACC-AT---TACATGATC----A--GTCTGGTTTGCT-GTCTTCCCGTCTGGTG-ACG-T-CCAGGTTAATTTGTGTAT--TTCCTTGTGGTGGAATATTG---TTCCACCAATAAC--CAG---GTTCT------CACAAAAATTG----ACAAACCT-AT-TTCCATT-GTCGT----TGAT--TGT-T-----CCACAACCTTG-T-TTTCCCATGACTTGTT-------C-CTTGCC--ATC---AT-TGATCGATCCTA-CTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT---------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCC-TTGGTCTTCTTGGTTGTGATTAGGTCAACTCCTCTACTGTGGT-GTTCATCATTTCTTCCTGAATAGATTATGTGATGACCTGTAGC-TAG--AT-TTCTTG-C--TA--TCCTGTCCATCGTGTTTCAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGC-GTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT-AAGGATGTCT-ACAT--TTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG----------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT---TT-ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGC--T-A-------TTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : CAGTCCATCTACTTTCGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|2 : TCTA-GTTGGAA---ACCT---CGT--T-AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTA---ACATT-------TGT-CAG---CA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTC-CATCTCCTGTTGA-T------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAG-A-A-TTCCATGTTGCTTTGTGGAT--GTCCATGTGCTTAAAGATGG---TTCCGCCAATCAC--CAAATTGTT-T------CCC------TG----TCGATCTTCGT----CATT-ACTAA----TATT--TAT-C-----CCATTCCTTCG-C-TGTCCCATT--CTGTT-------TTCTT--T--CCCTAGAT-TG-TCTATTC-AACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTC-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGC-TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTATGGCAG-TATTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTATAGTCAT-TTGGAC-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCC-G-------CAGCAGCAAACTCCATGTAA-GGCTTTTGGTCG-AAGGATATC---CGTTCTCGGGCTGGCAAC
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTG-A-T-------GTTGATTTGTGGATAATT--TTGTATTGGGAGAAT----TT--GCC----------------TCC------CA-AAAA---------CAAACTT-AT-TTCTTTTAGTCTTCCGCTATTG-TTT-TGGACACCACTGTCATA-T-TTTCCCATTTCGTATT-------C-TTT--TTAATT----T-TGCTTAAGTC-A-TCTATTGTACTTAGATCACCCAACATAAGG-----AGTGCATCATGAACTGCTGTGTCC-TCTAC-A-GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTGT-TGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCTG-TCGT---TTCTTCCAGAGTAAATTATCTGATGACATGAAA---AG--AT-TGCGAG-CTCCGTTTTCGGTCCTTGTTGTA-CGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAG-ACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGT--CTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AGCTCGT----T--T-AAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTA---ACTTTAGTTT--TG--CAA--TCA-CTAGGGAGTGATCGCTACTAATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTC-CATCTCCTGTTGA-TGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAA-T-T-CCATGTTGTTTTGTGGAT--GTCCTTATGCATAAAAATGG---TTCTGCCAA-------------TCCT------GACAGAAGGTG----CTCAGTCG-GT-CTCCATT-GTCAT----TACTAATATCT-----CCCTTTCCTTG-C-TATCCCATTA--TGTTTTATTTCC-CTT--G--AT-----T-TTATCT-TCCAA-CCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA-
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAG-CAGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTATGGTGG-TCATCTGATCTTCCTGAGTACAACATCTGATGACCTGATGT-TAG--TTGTTTGGGTC--CATTCCCAGTCCACCTTGCTTTGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTCCTC--T--GCCTTAC----TTTCATCAGCTTT--TTT-ATGTTTATCCTCATCT-----GTGGTTACTGCCTACATCAGCACC-T-T--TC-A---TCACT--------CTGATAAC--CTCATATGTCCCG---A-T-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTG-A-TGT-CCACATTGTCTTGTGGAC--CTCTTTGTGAAGGAATAATAAGTTTCCG----TGA-----------TCTGG----CAC---A--TG----CCCAGTCT-TT-CACCATT-GTCCT------TT--TTC-T-----CTATTACTCCA-TATGTC---TTACCTG------------TT--T--ATT---ATCTG--CG--CCGA-CCT-CAGCATTTAAGTCACCCA---T
gi|8 : tttgCGT--TGAAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTA---AATTCAGTTT--TGC-CAGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACC-T-T-----G---T------GTT--GCAGACTA----------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATG-A-G-T-Cca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTG-A-A-T-CCATGTTGATT-GTGGAG--TTCCTTATG-TGGAAAATTG---TACCTCCAATGACTTT-----GTTCTCATATGCACAAAA--TAGTTTCCAGG--T-GTGTTCCTTT-TTCAT----TATT--TTT-C-----CTACT-CCATGTT-TTTCCCATAA--TGT----------CTT------TC---A--TAACCGAT---G-CTT-TGGCAtggagaatttcatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCGGGTGATATCCAAGTGGCCTTGTGTATTCTCTTGTGAGTGAAGATACTGCCACCAGTGATGAGGT
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 55555555555 1 1 222 11 11 4444444444 1 11 2222222222 1 111 33333333333333333 33333333333333333333333 444444444444 1111111 11111 111 1111 99999999999999999999999999999999999999999 11 1111 222222222222 6666666666666666666666666666666666666666666666 22222 111 1 1 111 111 1 11 5555555555555 1 1 2 11 11 1 1 11 2222222222 111 111 2222222222222 2222 1 333 11 222 1 1 1 1 222
lowQualScore : 1 1 1 3 3333333333333 77777777777 3 6 0 7 3 3 333 1 1 1 1 1 88 88 0000000000 1 1 5 88 11 777 0000000000 7 5 1 1 333 99 0 888 444 77777777777777777 8 0 1 8 88888888888888888888888 1 1 99 8 3 000000000000 9999999 6 6 1 5 66666 6 1 000 7 1 2222 11111111111111111111111111111111111111111 6 6 11 6 1 4444 000000000000 7 11 999 1 9999999999999999999999999999999999999999999999 6 3 5555 1 44444 111 777 0 4 5 5 666 6 1 333 1 0 1 0 1 6 88 4 4 1 1 3333333333333 7 3 0 2 888 6 3 0 4 9999 1 1 1 77 33 0 0 1 0 33 3 0 5555555555 1 1 1 3 1 3 111 1 777 3333333333333 0 1 44 4444 3 7 3 999 88 0 6 2 111 5 2 1 1 5 1 5 1 1 5 111
lowQualScore : . . . . ............. ........... . . . . . . ... . . . . . .. .. .......... . . . .. .. ... .......... . . . . ... .. . ... ... ................. . . . . ....................... . . .. . . ............ ....... . . . . ..... . . ... . . .... ......................................... . . .. . . .... ............ . .. ... . .............................................. . . .... . ..... ... ... . . . . ... . . ... . . . . . . .. . . . . ............. . . . . ... . . . . .... . . . .. .. . . . . .. . . .......... . . . . . . ... . ... ............. . . .. .... . . . ... .. . . . ... . . . . . . . . . . ...
lowQualScore : 0 0 0 3 3333333333333 77777777777 7 7 0 3 7 3 333 0 0 0 0 0 55 00 5555555555 0 0 5 66 22 000 8888888888 2 0 0 0 000 22 8 888 000 66666666666666666 0 8 0 0 22222222222222222222222 4 4 22 0 2 222222222222 0000000 7 7 5 7 11111 3 0 777 5 0 7777 33333333333333333333333333333333333333333 3 7 77 7 0 2222 777777777777 5 77 333 0 2222222222222222222222222222222222222222222222 7 7 4444 4 66666 222 555 2 2 0 5 555 7 0 777 0 0 0 8 0 5 88 2 2 2 0 7777777777777 3 3 7 0 333 7 2 2 2 5555 0 0 0 00 88 0 2 2 0 88 2 8 2222222222 0 4 0 2 0 2 888 0 444 4444444444444 6 0 33 0000 7 3 3 000 33 7 7 5 000 5 5 0 0 5 0 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGACC-----GTTCT--CA------CAAAA--TG----CCGAGCCT-GTTTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGACC-----GTTCT--CA------CAAAA--TG----CCGAGCCT-GTTTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGAG-----A-----GTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGAC--TATTTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGT-AACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTA---ACTTGAGCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTC-CATTTCTTGTTAACC-AT---TACATGATC----A--GTCTGGTTTGCT-GTCTTCCCGTCTGGTG-ACG-T-CCAGGTTAATTTGTGTAT--TTCCTTGTGGTGGAATATTG---TTCCACCAATAACCAG---GTTCT--CA------CAAAAATTG----ACAAACCT-ATTTCCATT-GTCGT----TGAT--TGT-T-----CCACAACCTTG-T-TTTCCCATGACTTGTT-------C-CTTGCC--ATC---AT-TGATCGATCCTA-CTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT---------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCC-TTGGTCTTCTTGGTTGTGATTAGGTCAACTCCTCTACTGTGGTGTTCATCATTTCTTCCTGAATAGATTATGTGATGACCTGTAGC-TAG--AT-TTCTTG-C--TA--TCCTGTCCATCGTGTTTCAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGC-GTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT-AAGGATGTCT-ACAT--TTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG----------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT-TT---ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGC--T-A-------TTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : CAGTCCATCTACTTTCGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|2 : TCTA-GTTGGAA---ACCT---CGT--T-AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTA---ACATT-------TGT-CAG---CA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTC-CATCTCCTGTTGA-T------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAG-A-A-TTCCATGTTGCTTTGTGGAT--GTCCATGTGCTTAAAGATGG---TTCCGCCAATCACCAAATTGTT-T--CC------C------TG----TCGATCTTCGT---CATT-ACTAA----TATT--TAT-C-----CCATTCCTTCG-C-TGTCCCATT--CTGTT-------TTCTT--T--CCCTAGAT-TG-TCTATTC-AACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTC-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGC-TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTATGGCAGTATTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTATAGTCAT-TTGGAC-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCC-G-------CAGCAGCAAACTCCATGTAA-GGCTTTTGGTCG-AAGGATATC---CGTTCTCGGGCTGGCAAC
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTG-A-T-------GTTGATTTGTGGATAATT--TTGTATTGGGAGAAT----TT--GCC--------------TCC--CA-------AAAA---------CAAACTT-ATTTCTTTTAGTCTTCCGCTATTG-TTT-TGGACACCACTGTCATA-T-TTTCCCATTTCGTATT-------C-TTT--TTAATT----T-TGCTTAAGTC-A-TCTATTGTACTTAGATCACCCAACATAAGG-----AGTGCATCATGAACTGCTGTGTCC-TCTAC-A-GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTGT-TGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCTGTCGT---TTCTTCCAGAGTAAATTATCTGATGACATGAAA---AG--AT-TGCGAG-CTCCGTTTTCGGTCCTTGTTGTA-CGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAG-ACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGT--CTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AGCTCGT----T--T-AAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTA---ACTTTAGTTT--TG--CAA--TCA-CTAGGGAGTGATCGCTACTAATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTC-CATCTCCTGTTGA-TGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAA-T-T-CCATGTTGTTTTGTGGAT--GTCCTTATGCATAAAAATGG---TTCTGCCAA-----------TCCT--GA------CAGAAGGTG----CTCAGTCG-GTCTCCATT-GTCAT----TACTAATATCT-----CCCTTTCCTTG-C-TATCCCATTA--TGTTTTATTTCC-CTT--G--AT-----T-TTATCT-TCCAA-CCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA-
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAG-CAGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTATGGTGGTCATCTGATCTTCCTGAGTACAACATCTGATGACCTGATGT-TAG--TTGTTTGGGTC--CATTCCCAGTCCACCTTGCTTTGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTCCTC--T--GCCTTAC----TTTCATCAGCTTT--TTT-ATGTTTATCCTCATCT-----GTGGTTACTGCCTACATCAGCACC-T-T--TC-A---TCACT--------CTGATAAC--CTCATATGTCCCG---A-T-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTG-A-TGT-CCACATTGTCTTGTGGAC--CTCTTTGTGAAGGAATAATAAGTTTCCG----TGA---------TCTGGCA------C---A--TG----CCCAGTCT-TTCACCATT-GTCCT------TT--TTC-T-----CTATTACTCCA-TATGTC---TTACCTG------------TT--T--ATT---ATCTG--CG--CCGA-CCT-CAGCATTTAAGTCACCCA---T
gi|8 : tttgCGT--TGAAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTA---AATTCAGTTT--TGC-CAGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACC-T-T-----G---T------GTT--GCAGACTA----------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATG-A-G-T-Cca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTG-A-A-T-CCATGTTGATT-GTGGAG--TTCCTTATG-TGGAAAATTG---TACCTCCAATGACTTT---GTTCT--CATATGCACAAAA--TAGTTTCCAGGTGT-GTT-CCTTT-TTCAT----TATT--TTT-C-----CTACT-CCATGTT-TTTCCCATAA--TGT----------CTT------TC---A--TAACCGAT---G-CTT-TGGCAtggagaatttcatg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCGGGTGATATCCAAGTGGCCTTGTGTATTCTCTTGTGAGTGAAGATACTGCCACCAGTGATGAGGT
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 55555555555 1 1 222 11 11 4444444444 1 11 2222222222 1 111 33333333333333333 33333333333333333333333 444444444444 1111111 11111 111 1111 99999999999999999999999999999999999999999 11 1111 222222222222 6666666666666666666666666666666666666666666666 22222 111 1 1 111 111 1 11 5555555555555 1 1 2 11 11 1 1 11 2222222222 111 111 2222222222222 2222 1 333 11 222 1 1 1 1 222
lowQualScore : 1 1 1 3 3333333333333 77777777777 3 6 0 7 3 3 333 1 1 1 1 1 88 88 0000000000 1 1 5 88 11 777 0000000000 7 5 1 1 333 99 0 888 444 77777777777777777 8 0 1 8 88888888888888888888888 1 1 99 8 3 000000000000 9999999 6 6 1 5 66666 6 1 000 7 1 2222 11111111111111111111111111111111111111111 6 6 11 6 1 4444 000000000000 7 11 999 1 9999999999999999999999999999999999999999999999 6 3 5555 1 44444 111 777 0 4 5 5 666 6 1 333 1 0 1 0 1 6 88 4 4 1 1 3333333333333 7 3 0 2 888 6 3 0 4 9999 1 1 1 77 33 0 0 1 0 33 3 0 5555555555 1 1 1 3 1 3 111 1 777 3333333333333 0 1 44 4444 3 7 3 999 88 0 6 2 111 5 2 1 1 5 1 5 1 1 5 111
lowQualScore : . . . . ............. ........... . . . . . . ... . . . . . .. .. .......... . . . .. .. ... .......... . . . . ... .. . ... ... ................. . . . . ....................... . . .. . . ............ ....... . . . . ..... . . ... . . .... ......................................... . . .. . . .... ............ . .. ... . .............................................. . . .... . ..... ... ... . . . . ... . . ... . . . . . . .. . . . . ............. . . . . ... . . . . .... . . . .. .. . . . . .. . . .......... . . . . . . ... . ... ............. . . .. .... . . . ... .. . . . ... . . . . . . . . . . ...
lowQualScore : 0 0 0 3 3333333333333 77777777777 7 7 0 3 7 3 333 0 0 0 0 0 55 00 5555555555 0 0 5 66 22 000 8888888888 2 0 0 0 000 22 8 888 000 66666666666666666 0 8 0 0 22222222222222222222222 4 4 22 0 2 222222222222 0000000 7 7 5 7 11111 3 0 777 5 0 7777 33333333333333333333333333333333333333333 3 7 77 7 0 2222 777777777777 5 77 333 0 2222222222222222222222222222222222222222222222 7 7 4444 4 66666 222 555 2 2 0 5 555 7 0 777 0 0 0 8 0 5 88 2 2 2 0 7777777777777 3 3 7 0 333 7 2 2 2 5555 0 0 0 00 88 0 2 2 0 88 2 8 2222222222 0 4 0 2 0 2 888 0 444 4444444444444 6 0 33 0000 7 3 3 000 33 7 7 5 000 5 5 0 0 5 0 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGACC-----GTTCT--CA------CAAAA--TG----CCGAGCCT-GTTTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGACC-----GTTCT--CA------CAAAA--TG----CCGAGCCT-GTTTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGAG-----A-----GTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGAC--TATTTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGT-AACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTA---ACTTGAGCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACC-T-C--TCTGAACTCTTTATGTCTTGTTGAGAACCTCTC-CATTTCTTGTTAACC-AT---TACATGATC----A--GTCTGGTTTGCT-GTCTTCCCGTCTGGTG-ACG-T-CCAGGTTAATTTGTGTAT--TTCCTTGTGGTGGAATATTG---TTCCACCAATAACCAG---GTTCT--CA------CAAAAATTG----ACAAACCT-ATTTCCATT-GTCGT----TGAT--TGT-T-----CCACAACCTTG-T-TTTCCCATGACTTGTT-------C-CTTGCC--ATC---AT-TGATCGATCCTA-CTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT---------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCC-TTGGTCTTCTTGGTTGTGATTAGGTCAACTCCTCTACTGTGGTGTTCATCATTTCTTCCTGAATAGATTATGTGATGACCTGTAGC-TAG--AT-TTCTTG-C--TA--TCCTGTCCATCGTGTTTCAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGC-GTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT-AAGGATGTCT-ACAT--TTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG----------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT-TT---ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGC--T-A-------TTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : CAGTCCATCTACTTTCGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|2 : TCTA-GTTGGAA---ACCT---CGT--T-AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTA---ACATT-------TGT-CAG---CA-CTAGGGAGTGATCGCTACCAATGTCTGCACC-T-TGTTTTG---CCACTACATCCAGTAGACTACTTCTC-CATCTCCTGTTGA-T------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAG-A-A-TTCCATGTTGCTTTGTGGAT--GTCCATGTGCTTAAAGATGG---TTCCGCCAATCACCAAATTGTT-T--CC------C------TG----TCGATCTTCGT---CATT-ACTAA----TATT--TAT-C-----CCATTCCTTCG-C-TGTCCCATT--CTGTT-------TTCTT--T--CCCTAGAT-TG-TCTATTC-AACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTC-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGC-TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTATGGCAGTATTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTATAGTCAT-TTGGAC-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCC-G-------CAGCAGCAAACTCCATGTAA-GGCTTTTGGTCG-AAGGATATC---CGTTCTCGGGCTGGCAAC
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTG-A-T-------GTTGATTTGTGGATAATT--TTGTATTGGGAGAAT----TT--GCC--------------TCC--CA-------AAAA---------CAAACTT-ATTTCTTTTAGTCTTCCGCTATTG-TTT-TGGACACCACTGTCATA-T-TTTCCCATTTCGTATT-------C-TTT--TTAATT----T-TGCTTAAGTC-A-TCTATTGTACTTAGATCACCCAACATAAGG-----AGTGCATCATGAACTGCTGTGTCC-TCTAC-A-GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTGT-TGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCTGTCGT---TTCTTCCAGAGTAAATTATCTGATGACATGAAA---AG--AT-TGCGAG-CTCCGTTTTCGGTCCTTGTTGTA-CGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAG-ACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGT--CTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AGCTCGT----T--T-AAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTA---ACTTTAGTTT--TG--CAA--TCA-CTAGGGAGTGATCGCTACTAATGTCTGCACCGTGT--TTTG---TCACTACACCCAACAGACTACTTCTC-CATCTCCTGTTGA-TGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAA-T-T-CCATGTTGTTTTGTGGAT--GTCCTTATGCATAAAAATGG---TTCTGCCAA-----------TCCT--GA------CAGAAGGTG----CTCAGTCG-GTCTCCATT-GTCAT----TACTAATATCT-----CCCTTTCCTTG-C-TATCCCATTA--TGTTTTATTTCC-CTT--G--AT-----T-TTATCT-TCCAA-CCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA-
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAG-CAGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTATGGTGGTCATCTGATCTTCCTGAGTACAACATCTGATGACCTGATGT-TAG--TTGTTTGGGTC--CATTCCCAGTCCACCTTGCTTTGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTCCTC--T--GCCTTAC----TTTCATCAGCTTT--TTT-ATGTTTATCCTCATCT-----GTGGTTACTGCCTACATCAGCACC-T-T--TC-A---TCACT--------CTGATAAC--CTCATATGTCCCG---A-T-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTG-A-TGT-CCACATTGTCTTGTGGAC--CTCTTTGTGAAGGAATAATAAGTTTCCG----TGA---------TCTGGCA------C---A--TG----CCCAGTCT-TTCACCATT-GTCCT------TT--TTC-T-----CTATTACTCCA-TATGTC---TTACCTG------------TT--T--ATT---ATCTG--CG--CCGA-CCT-CAGCATTTAAGTCACCCA---T
gi|8 : tttgCGT--TGAAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTA---AATTCAGTTT--TGC-CAGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACC-T-T-----G---T------GTT--GCAGACTA----------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATG-A-G-T-Cca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTG-A-A-T-CCATGTTGATT-GTGGAG--TTCCTTATG-TGGAAAATTG---TACCTCCAATGACTTT---GTTCT--CATATGCACAAAA--TAGTTTCCAGGTGT-GTT-CCTTT-TTCAT----TATT--TTT-C-----CTACT-CCATGTT-TTTCCCATAA--TGT----------CTT------TC---A--TAACCGAT---G-CTT-TGGCAtggagaatttcatg
blockSeqs : T A C . . TATGTATGTGT T C T T A . . C T G C T TA AC . C A . GT AG TAA TTGAAC T G T T ATT CA GGA TCA TTTATGTTTATCCT T T G TGTTTTGCCACTACATCCA A T TT A C TTGATGAT TACCAGT . G A A ATT T C AAT C G AAGT AATGACTTTGTTCTCATATGCACAAAATAGTTTC G C TT A A CCGC GTTTTGGACA C TC TA G ATGTTTTATTTCCCTTGATTTTATCTTCCAA A T TAGA T CAACA TTT ACA A G A TAC C G AAA A . G A T AT T G A T TTAGCAAATGTC A . G GTG C T T CTGA T A T TA TC G A T TC T CATGTACCAA T A G A A G CAT A TGT CGTGCCAGC C TC AGA T T T GAA TC G T . T G T A A G . A T A TTT
blockSeqs : . . A A . . T T . . T G TAA TTAAT T G T T ATT . AGA . AGTTTTGCCAGT . T . GTTTTGTCACTACACCCA A T TT . C ATATCAG A . T G . TGT T A G T G G AATCACCAAATTGTTTCCCTGT A . CT . T . AATATCT G AT TT T CTGTTTTCTTTCCCTAGATTGTCTATTCAA . T GAGG A CA TTA GCA C . A TA . C AA T . C T C T A T G A TTGGCAAAAGCA A . . TTG . T G CTGA A T A T . . A . . T TC T A T G T A T T C TGGGTCAGT G CA G . . . . . .
blockSeqs : . G A T TTAAC G . G A TGG . GGA . AGTTTTGCAAT . A . TTCATCACT T A . . G TTGAT A . G A . TT C T G C A G AATCCTGACAGAAGGTGC C . CA . A . TATC T TT C A TCGTATTCTTTTTAATTTTGCTTAAGTCA . C TAAG T . . ACC G . . A . A A . T T A A T . A T C A T . . . G . . T TG A T T G C G T T C AATCAAT C
blockSeqs : G . . CTA G . G A TGG . . . TGTCAG . T . TGTGTT A T . . . . A . C C . GT T T C A T G TGATCTGGCACATGC C . T . C . TTCT A CC T G ACCTGTTTATTATCTGCGCCGA . C . A . TG T A A . A . . T . TGG
blockSeqs : . . . G A TGG . . G A . AT . A T . A . TCCCAAAAA A . . . A . TTTC . AT C T ATGTCTTTCATAACCGATG . .
blockSeqs : . T
blockSeqCons : TTAAC***** GGA AGTTTTGCCAGT***** TGTTCGTCACT************ NT*** AATCCTGACAAAATGCTGC********************** NTGTTTTCTTTCTATTATCTATCCGA******************** CA***
originalCons : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGT--T-AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTT-ATGTTCAGTCTCA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-T-T--TCTG---TCACTACGTCCAGCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-A-N-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATGACC-----GTTCT--CA------CAAAA--TG----CCGAGCCT-GTTTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTACCTGTT-------C-CTT--T--ATC---AT-TGATCGATCC-A-CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
finalCons : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT-TT---ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTAAC-----TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTA---ACTTTAGTTTTGCCAGT-----CA-CTAGGGAGTGATCGCTACCAACGTCTGCACC-TTGTTCGTCACT------------GCAGACTACTTCTC-CATCTCCTGTTGA-T-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-ANT---CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAATCCTGACAAAATGCTGC----------------------CGAGCCT-GTTTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-T-TNTCCCATTNTGTTTTCTTTCTATTATCTATCCGA--------------------CCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCGGGTGATATCCAAGTGGCCTTGTGTATTCTCTTGTGAGTGAAGATACTGCCACCAGTGATGAGGT
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG
Alignments
lowQualScore : 1 7777777777777 55555555555 1 222 1 11 11 4444444444 1 11 2222222 1 2222222222222222222222222222 88888888888888888888888888888888888888 44444444444 1111111 1111 11111 999999999999999999999999999999999999999999 11 1111 222222222222 1111111 555555555555555555555555555555555 22222 111 1 1 111 111 1 11 5555555555555 1 1 2 11 11 1 1 11 2222222222 111 111 2222222222222 2222 1 333 11 222 1 1 1 1 222
lowQualScore : 1 1 1 3 3333333333333 77777777777 3 6 0 7 3 333 3 1 1 1 1 1 88 88 0000000000 1 1 5 88 11 777 1 4444444 7 5 1 1 333 99 0 888 6666666666666666666666666666 8 0 1 88888888888888888888888888888888888888 1 99 8 3 00000000000 9999999 6 1 1 5 8888 7 1 77 999 1 44444 0 222222222222222222222222222222222222222222 1 6 3 6 00 6 1 4444 000000000000 2222222 3 99 1 99 99 333333333333333333333333333333333 6 3 5555 1 44444 111 777 0 4 5 5 666 6 1 333 1 0 1 0 1 6 88 4 4 1 1 3333333333333 7 3 0 2 888 6 3 0 4 9999 1 1 1 77 33 0 0 1 0 33 3 0 5555555555 1 1 1 3 1 3 111 1 777 3333333333333 0 1 44 4444 3 7 3 999 88 0 6 2 111 5 2 1 1 5 1 5 1 1 5 111
lowQualScore : . . . . ............. ........... . . . . . ... . . . . . . .. .. .......... . . . .. .. ... . ....... . . . . ... .. . ... ............................ . . . ...................................... . .. . . ........... ....... . . . . .... . . .. ... . ..... . .......................................... . . . . .. . . .... ............ ....... . .. . .. .. ................................. . . .... . ..... ... ... . . . . ... . . ... . . . . . . .. . . . . ............. . . . . ... . . . . .... . . . .. .. . . . . .. . . .......... . . . . . . ... . ... ............. . . .. .... . . . ... .. . . . ... . . . . . . . . . . ...
lowQualScore : 0 0 0 3 3333333333333 77777777777 7 7 0 3 7 333 3 0 0 0 0 0 55 00 5555555555 0 0 5 66 22 000 7 2222222 2 0 0 0 000 22 8 888 8888888888888888888888888888 0 8 0 00000000000000000000000000000000000000 4 22 0 2 22222222222 0000000 7 0 5 0 1111 6 0 99 111 0 66666 1 222222222222222222222222222222222222222222 0 3 7 7 88 7 0 2222 777777777777 8888888 3 22 0 22 22 555555555555555555555555555555555 7 7 4444 4 66666 222 555 2 2 0 5 555 7 0 777 0 0 0 8 0 5 88 2 2 2 0 7777777777777 3 3 7 0 333 7 2 2 2 5555 0 0 0 00 88 0 2 2 0 88 2 8 2222222222 0 4 0 2 0 2 888 0 444 4444444444444 6 0 33 0000 7 3 3 000 33 7 7 5 000 5 5 0 0 5 0 0 0 0 5 555
consensus : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTT--AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTAAC------TTTA-GTTT--TGCC-AGTC--A-CTAGGGAGTGATCGCTACCAACGTCTGCACCT---TG--TTCT----GTCACT-------GCA-------GACTACTTCTC-CATCTCCTGTTGAT-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-AN-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAAGATTG---TTCCGCCAA--------T---CCTG-----------ACAAAA--G-----TTGCCGAGCCT-GT-TTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCTTG-TTTTCCCAT--TNTGTTTT--CTTTC------T----A---TT----ATCTA--T-CC-ACCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
Reference ( family-6544 ) : TGTACCGTTNTCCTNGCNTATTGGTGTATTTGTCGGA-GAACTGTAACCCCC-------------ACTGAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCCGCGATTTCCGCTT-CTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGNATTTTCTTCNTNGTTTCTTTTNCTTTGNCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTCAGGNCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTNTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTT--AAC--TTGTTGGTTTTTCGAGTTTGTTNATGTCNAGTGGTGGNNNTCTTTGGTCTTTCCTC--TTGGCTTTACGGAGTTTTAAC------TTTA-GTTT--TGCC-AGTC--A-CTAGGGAGTGATCGCTACCAACGTCTGCACCT---TG--TTC-----GTCACT-------GCA-------GACTACTTCTC-CATCTCCTGTTGAT-AT---TACATGATC----A--ATCTGGTTT-CTGGTTTTACCGTCTGGTG-AN-T-CCACGTTGNTTTGTGGAT--TTCCTTGTGNTGGAANATTG---TTCCGCCAA--------T---CCTG-----------ACAAAAT-G-----CTGCCGAGCCT-GT-TTCCATT-GTCNT----TATT--TNT-T-----CCACTNCCNCG-TTNTCCCAT--TNTGTTTT--CTTTC------T----A---TT----ATCTA--T-CCGACCT-TGGCATTNAGGTCTCCCA---TAATGTTNACAATACGTCATGGCGTGGTGTGTTCATCTACTA-GTTTTCTGAAGTTNCTCATAGAAAACCTNTCTTT-TCNTCTTCTTCNGCATCTTCAGTATGGCGCGTAACAAACTATNATTGTGAGTTTGGCAAA-G-C-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCGCTTACAGGTTTCCATTCTAGTAAGCGTTNCGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCCTCTACTATGGCGGTCGTCTGNTCTTCCTGAGTANANCATCTGATGACCTGANGT-TAG--AT-TTCGAG-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGNAGTTTTCCATT--TCTCTAA--CTACT--TG-G--CAGT-TTTCCTGTCTNGTAGAGGGCGC-G-ACATTCCAGCAACCAACTCTATATACTGTCTTTTGGTTT-AAGGATGTC--ACGT--TCGGGCTGTCAGCGTCCGATTGGTCCGTGNCNGACATTCNTGCACGGGTCCAGTTTCCNGNCGGAGTATTTTCCATCCT
gi|1 : TGTACCGTTGTCCTTGCGTATTGATGTATTTGTCGGAAGAACTGTAACCCCCCCCCCCCCCCCCCACTGAGAGTCTTTGTAACATGGTAGAG-----A-----GTTTTCAAGTCTTGTTTTGCTGCCGCAATTTCCGCTT-CTGTTGCAAGCT-GTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGCGTTACATTTTTGTCTTGTTGTGAGTATTTACTTTTCAATTGCTTTTATTTTGATGTGGTTTGATTTGGTTGACAGAATTTTCTTCATTGTTTCTTTTGTTTTGACTAT--TTTATCCCAT--GTTTCTTGTGATATCCATTCCTCCTTTTTCCACTTTTTAGGGCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGCATTGTTAAAATCCTCTATGGTGAGCTTTTGTACATTACTCAGGATGTTGAATTTATTTTTTACCTCTA-TCTGAAA-GGATCTTAACGTTGTAACGGTTGTTGGTTTTTTGAGTTTGTGTATGTCTAATGGTGGATTTCTTTGGTTTTCCATC--TTGGCTTT------TCTTAAC------TTGA-GCTTGATGTTTAATCTCA-CTAGGAAATGATTACTGCCAGCATCGGCACCTCTCTGAACTCTTTATGTC-TT-------GTT-------GAGAACCTCTC-CATTTCTTGTTAACCAT---TACATGATC----A--GTCTGGTTTGCTG-TCTTCCCGTCTGGTG-ACGT-CCAGGTTAATTTGTGTAT--TTCCTTGTGGTGGAATATTG---TTCCACCAATAACCAGGT---TCTC-----------ACAAAA--A-----TTGACAAACCT-AT-TTCCATT-GTCGT----TGAT--TGT-T-----CCACAACCTTG-TTTTCCCATGACTTG-TTC--CTTGC------C----A---TCATTGATCGA--T-CCTACTT-TGGCATTGGAATCTCCCA---TGATGATGACAAT--GGCATGCCAAGGTGTGTTC-TCTGTT--GTTTCCTGACGTTTCTCATAG--AACCTCTCTTTCTCCTCTTCATCTGCATCTTCAGTA-GGCGAATAACATACTATGATGGTAAGT---------------GTTGT------------GTAATTCTGTCGCTGACAGGCTTCCATCCAATCAAACATTCC-TTGGTCTTCTTGGTTGTGATTAGGTCAACTCCTCTACTGTGGTGTTCATCATTTCTTCCTGAATAGATTATGTGATGACCTGTAGC-TAG--AT-TTCTTG-C--TA--TCCTGTCCATCGTGTTTCAC--AG------ATGCCGAGTATTTCTAGGCTGTAGTTTTCCATC--TCCTGGA--TGACT--TGTG--CAATCTTTCCTGTTTGGTAGAGGGTGC-GTACATTCCAGCAACCAACTCTATATACTGTCTTTTGGGTT-AAGGATGTCT-ACAT--TTGGGCTGTCAGCGTCCGATTGG-CTTTGACTGAC-TTCCTGCACGAGTCCAGTTTTCTGGTGG-GTA---TCCATCCT
gi|10 : TGGTGAGCTATTGTACATTACTCAGGATGTTAAATTTA-TTTGTACCTCTA-TCTGAAA-GGATCTTAACG---------TTGTTGGTTCTTTGAGTATGCGTATGTCTAATTGTCGATTTCTTtttcccggatctattt
gi|11 : -CTGTTGCAAGCTTGTTGATGTAATTTTTCTTGTCTTTTCTTGCACTTCGCATTACATTTTTGTCTTGTTGTGAGTATTTACTTCTCAATTGCTCTT---TT-ATGCGGTT
gi|12 : TTTTACCTCTGGTCTGAAAAGGATTTTAACGCT--A-------TTGGCTCTTTGATTTTGCTTAAGTCTAAATGTGGATTTC-TTGGTTTTTCCTTCATTAGCTT
gi|13 : gaTATTTGGCGGA-GAACTGTAACCCCC-------------ACTAAGAGTCTTTGTAATTTGGTACAT-----A-----ATTTTCATGTCTTGTTTTGCTGCTGCGAGTT---TTT-CTTTTACA
gi|14 : CAGTCCATCTACTTTCGC--TC------ACTCCTAGGAGATGGAAGTTGAA----TCGATTCATCTCAGATGTTACCCGTG-C--CAGC-TTGCCTGTCTCGTA
gi|15 : GTCGGGTG-ATAT-CCAAGTGGCCTTGTGTAT--TCTCTTGTGAGTGAAGATAC---TGCCACCAG--------T---
gi|2 : TCTA-GTTGGAA---ACCT---CGTT--AAT--TTGTGGGGTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGATCTTTTCTC--TTGGCTTTATGGAGTTTTAAC---------A---TT--TGTC-AG-C--A-CTAGGGAGTGATCGCTACCAATGTCTGCACCT---TG--TTTT----GCCACT-------ACATCCAGTAGACTACTTCTC-CATCTCCTGTTGAT------TACATGATG----A--ATTTGGTTT-CTGGTTTTATCGTCTGGAG-AA-TTCCATGTTGCTTTGTGGAT--GTCCATGTGCTTAAAGATGG---TTCCGCCAA--------T---C--------------ACCAAATTGTTTCCCTGTCGATCTTCGT----CATT-ACTAA----TATT--TAT-C-----CCATTCCTTCG-CTGTCCCAT--TCTGTTTT--CTTTC------CCTAGA---TT----GTCTA--T-TCAACCT-TGG--------TCTCC-----TAATGTTTACAATACATCATGGCATAGTGT-TTCATCCATTACGTTTT--GCAGCTGTTCATAGAA--TGTATCTTT-TCGTCTTCTTCAG-ATCTTCAGAATGGTGCGTAACAAACTATTATTGTGAGTTTAGCAAATGTC-GAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGC-TTGTGTATACCTCTTTTGTTGTTATCAAGGCCACTCCTC-ACTATGGCAGTATTCTGATCTGCCTGAGTATAACATCTGATGACCTGATGTATAGTCAT-TTGGAC-C--CATTTCCAGTCCATCTTGTTTCGC--TG------ACTCCTAAGAGATCTAGCTTGTAGTTTTCCATT--TCTCTAA--CTACT--TG-G-------------GTCTGGTAGAGGGTCC-G-------CAGCAGCAAACTCCATGTAA-GGCTTTTGGTCG-AAGGATATC---CGTTCTCGGGCTGGCAACgatgaggt
gi|3 : ccaggactgaaaatcggtagcgaacttCTGGTTC-ATTGCATGGCCATCTGGTG-AT-------GTTGATTTGTGGATAATT--TTGTATTGGGAGAAT----TT--GCC----------T---CC--------------CAAAA-----------ACAAACTT-AT-TTCTTTTAGTCTTCCGCTATTG-TTT-TGGACACCACTGTCATA-TTTTCCCAT--TTCGTATT--CTTTT------T----AATTTT----GCTTAAGT-C--ATCTATTGTACTTAGATCACCCAACATAAGG-----AGTGCATCATGAACTGCTGTGTCC-TCTAC-A-GCTCTCTGAAGTTCCTCATAGAAAACCATCCTTT-TCCTCATCTGCTTTATGTTCTGT-TGAAGCTTAGCCGACTACAATTGTcgt
gi|3 : CCTATACTACTGCTGTCGT---TTCTTCCAGAGTAAATTATCTGATGACATGAAA---AG--AT-TGCGAG-CTCCGTTTTCGGTCCTTGTTGTA-CGCCATGTACCAAACATCTGAATGTTGTA-CCTGCCATTTTCCATT-----ATAA---TGCA--AA-T--CAAT-TCTCTTGTCTCGTAGATAGCACAG-ACATTTTAACTACCAACCCTACATACTTTTTGTTAGTTTTGAGAATGTCGAATGT--CTAGATT-TCAGTTTCC---TGGTCCGTGTCAAACATTCGT-CATGGGTTCAGTTTCCAGTCGGAGTATTTTCCATCCTcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggcctatactactgctgtcgtttcttccagagtaaattatctgatgacatgaaaagattgcgagctccgttttcggtccttgttgtacgccatgtaccaaacatctgaatgttgtacctgccattttccattataatgcaaatcaattctcttgtctcgtagatagcacagacattttaactaccaaccctacatactttttgttagttttgagaatgtcgaatgtctagatttcagtttcctggtccgtgtcaaacattcgtcatgggttcagtttccagtcggagtattttccatcctcaccttatctgtttt
gi|4 : ctggttcattgcatggccatctggtgatgttgatttgtggataattttgtattgggagaatttgcctcccaaaaacaaacttatttcttttagtcttccgctattgttttggacaccactgtcatattttcccatttcgtattctttttaattttgcttaagtcatctattgtacttagatcacccaacataaggagtgcatcatgaactgctgtgtcctctacagctctctgaagttcctcatagaaaaccatccttttcctcatctgctttatgttctgttgaagcttagccgactacaattgtcttcttttttttttttatcttaatggaatattgcagaaagatttgtatcgttgaatctcccaacataacagacacttccctagccccccccccctcaaataataggTGTACCGTTTTTCTAGCCTATTGGTGTATTTGTTGGA-GAACTGTAAACCCC-------------ACTGAGAGTCTTTGTAATTTAGTACATTATGTATGTGTATTTCCATGTCTTGTTTTGCTGCAGTGATTTCCGCTTTCTGTTGCAAGCTTGTCGATGTAATTTTTCTTGTCTGTTCTTGCACTTCGATTTACATTTTTGTCTTGTTGTTAGTATTTACTTTTCAATTGCTCTT---TT-ATGCGGTTTGATTTGGTTGACAGCATTTTCTTCTTGGTTTCTTTTCCTTTGTCTATATCTTATCCCATACGTTTCTTGTGATATCCATTCCT----------CTTTTCAGACCCAAGTATTTTCTTTCCAGCTTCTAGCAGTGTATTGTTAAAATCCTCTAcaccttatctgtttt
gi|5 : ttcctcagccctgagcatttcagcatgaatttggtccatccctggagatttgctgtttttcaaagacttgatagctgtttttacttcctcaagtgatggtgagttgaccagtgtcaatatctagttcttcggttggtggtgtgattacagcctcggttgatggatcgtttctattaagtactatttcaaagtgttctttccagcgcttcaattcttcttcaaggctgtctgtgagTCTA-GTTGGAA-AGCTCGT----TT--AAC--TTGT-GGTTTTTC-AGTTTGTTGATGTCAAGTGGTGGTGGTCTTTGGTCTTTTCTC--TTGGCTTTACAGAGTTTTAAC------TTTA-GTTT--TG-C-AATC--A-CTAGGGAGTGATCGCTACTAATGTCTGCACCG---TGT-TTT-----GTCACTACACCCAACA-------GACTACTTCTC-CATCTCCTGTTGATGAT---TATATGATC----A--ATTTGGTTT-CTGGTTTTATTGTCTGTAGAAT-T-CCATGTTGTTTTGTGGAT--GTCCTTATGCATAAAAATGG---TTCTGCCAA--------T---CCTG-----------ACAGAA--G-----GTGCTCAGTCG-GT-CTCCATT-GTCAT----TACTAATATCT-----CCCTTTCCTTG-CTATCCCAT--TATGTTTT--ATTTCCCTTGAT----T---TT----ATCT---T-CCAACCT-TGGTATTGAGGTCTCC-----TAATGTTAACAAGACCTCACGGCGTGGTGT-TTCATCTACTA-
gi|6 : caggattgaaaatcggttgcgaattTCTTT-TCATCTTCTCCAGCATCTTCAGT-TGGTGCATAATAAACTATTATTGTGAGTTTGGCAAAAG-CAGAGTTGTATCTGGCTTTAAGTAA-TCTCTCACTTACAGGTTTCCATTCTAGTAAGCGTTTTGTTTACCTCTTTGGTTGTTATCAAGGC-ACTCTGCTACTATGGTGGTCATCTGATCTTCCTGAGTACAACATCTGATGACCTGATGT-TAG--TTGTTTGGGTC--CATTCCCAGTCCACCTTGCTTTGC--TG------ACTCCTAAGAGATCAAGCTTGAAGTTTTCCATT--TCTCTAA--CTACT--TG-GGTCAGT-TTTCCTGTCT
gi|7 : aTTCCTC--T--GCCTTAC----TTTCATCAGCTTTTTTATGTTT--ATCC---TC--ATCT-----GTGGTTACTGCCTACATCAGCACCT---T----TC-----ATCACT--------CT-------GATAAC--CTCATATGTCCCG---AT-ATCAGTACGTGATCTACCAGTATCTGTTTT-TCCATTCTCCTATCTGGTG-ATGT-CCACATTGTCTTGTGGAC--CTCTTTGTGAAGGAATAATAAGTTTCCG-TGA--------T----CTG-----------GCACA----------TGCCCAGTCT-TT-CACCATT-GTCCT------TT--TTC-T-----CTATTAC---------TCCA---TATGTCTTACCTGTT------T----A---TT----ATCTG--CGCCGACCT-CAGCATTTAAGTCACCCA---T
gi|8 : tttgCGTTG-AAC--TTGTGGGTTTTTC-AGTTTGTTGATGTCAAGTGATGGTGGTCTTTGATCTTTTCTC--TTGGCCTTACGGAGTTTTAAA------TTCA-GTTT--TGCC-AGT---A-CTAGGGAGTGATCGCTACCAATGTATGCACCT---TG--T-------GT---T-------GCA-------GACTA---------------------------TACTTCACC----A--ATTTGGTTT-CTGGTTTTACAGTCTCATG-AG-T-Cca
gi|9 : caggactgaaaatcggttgtgaaattccagttggaaagctTG-AA-T-CCATGTTGATT-GTGGAG--TTCCTTATG-TGGAAAATTG---TACCTCCAA--------TGACTTTGTTCTCATATGCACAAAATAG-----TTTCCAGG--T-GTGTTCCTTT-TTCAT----TATT--TTT-C-----CTACT-CCATGTTTTTCCCAT--AATG---T--CTTTC-----------A---TA----ACCGA--T----GCTT-TGGCAtggagaatttcatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTCAAAGACTTGATAGCTGTTTTTTACTTCCTCAAGTGATGGT
Unaligned ( gi|17 ): CAAAGACTTGAAGCTGTTTTAACTTCCTCAAGTGATGGTCG