lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 11 11111 44444444444444444 111 7777777777777777777777777 4444444444444444444444444444444444444444444 11111 11111111 11111 22222 11 88888888888888888888888888888888888888888888888 1 22222222 11 4444444 2222222222 2222222 1 22222222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 22 1 1
lowQualScore : 8 11 999 6 1 99999 5 44444444444444444 2 444 6 8 1111111111111111111111111 2222222222222222222222222222222222222222222 33333 1 77 555 3 88888888 66 99999 77777 1 1 66 22 55555555555555555555555555555555555555555555555 3 3 6 66666666 33 888 1111111 7777777777 0 5 9999999 0 44444444 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 7 5 5 66666 1 1 2 11 9 1 8 3 7 6 6
lowQualScore : . .. ... . . ..... . ................. . ... . . ......................... ........................................... ..... . .. ... . ........ .. ..... ..... . . .. .. ............................................... . . . ........ .. ... ....... .......... . . ....... . ........ ............................................................................................................................................................................................................................................................ . . . . ..... . . . .. . . . . . . .
lowQualScore : 0 00 222 0 4 22222 8 00000000000000000 8 000 2 2 7777777777777777777777777 3333333333333333333333333333333333333333333 99999 4 44 111 0 66666666 99 00000 66666 4 6 00 33 88888888888888888888888888888888888888888888888 7 2 0 66666666 88 888 5555555 5555555555 2 7 3333333 9 22222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 3 7 7 55555 7 8 8 44 6 8 0 2 3 0 0
consensus : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----GTATNG-CCCCCGT--TTT--N-AGAAG---TCANCATGGACAAAACTGTAGATCATTATTTAGTAAA-C--ATCATGTCTAN--NTCAAAATAAGTATCGGTTTTAACATA---AGA---C---AT----ATTC-CAAGTTCACAGGAAGGTNACAAAGTT-AAT--GAAAATTCCGAATTTCCTCA----TTTTGGCNAAAC-ATT-----G-A-A----C----GAAGC-------GTACGT-TGC------TTCAGGAAATACAGAGAG-AC--ACA--CTTGCCTA---CCTC-NT-A-AACT--TACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTA--------TAAAAA--TGGT---AC----ATAG------GC-TA--ATGCAT--T------C---------CAAAG--CAAAATGTATGTAA-ATTTC----AAAAATATGCCA---A-ATTTTCTT---CTGAAACCN-TAAAT-TTGCTC--AAAT--ATGACA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGATTATAT-ATTTCTA-TA---AGGCATCATCTTGAA--ATTAATT--TA-AAGGTTTCACGGTTTT-A-ANTCTATTTTGAAATTTAAGCGAAAATGGGGACC-ACATGGGACCCTTATCCTACCTTG
Reference ( gi|1 ) : GTTGAAGG-AG--AAGGTA-G-GATAAAAGCCAT----ATATTG-TTTCCAA--TT---G-AGGAG---TCATCATGGACAAAACTCCA---CATCATTTAGTAAGCCACATCATGTCTAA--ATCAAAACAAGTATCAGTTTTAACATA---AAA---C---AT----ATTC-CAAGTTCACAGGAAGGTCATAAAGAT-AAT--GAAAATTTTGACTTTCCTCA---ATTTTGGCCAAAC-ATT-----A-A------T----GCAGC-------ATATGT-T-C------TTCATGAAATACAGAGAGAAC--ACA--CTTGCCTA---CCTC-AT-A-AACT--GACATATATTGTACAC-CTGTA---TCAGCTACAACTTTGGTA--------TAAATA--TGGG---AC----ATAG------GC-TA--ATGAAT--T------C---------CAAAG--CAAAATGTATGTAAAATTTCAACAAAAAATATGCCATATATATTTTCTT---CTGAAACCC-TACAT-TTACTC--AAATAAATGACA--ATCC-----TGTGGTTTTAAGTCATT-TA-CA-TTCATGATCATGATCATAT-ATTTTTA-TA---AGGCATCATTTTGAA--ATTAACTTTTACAAAGTTTCACTGTTTT-A-ATGCTGTTTTGAAATTTAGGCAAAAATAGGGATC-ACATGGAACCCTTGTTCTACCTTGTTCAT
gi|11 : GCTAAAGG-AG--AAAGTGTG-GATAAGGGCCTT----TTGTGG-TCTCCAT--TTT--A-AAAAG---TCAGCATAATTGAAACTGTAGGTCATTATTTGGTCAACCATATCATGTCTAT--ATGGAAATTAGTACCA-TTTTACCAT-----GA---C---AT----A
gi|2 : ttTTGAAAGCAG--AAGGTA-G-GATAAGGGACAT----ATATTA---CCCGATTTT---C-AGAAT---TCATCATGAACAAAATTGTAAACCATTATTTAGTA---------ATG---AG--AT---AATATTTATCCATTTTAGTATATCTA---------AT----ATTCAAAAGCTCACAGGAAAATGACAAAGTA-AAT--GGAAATTCCGAATTTc
gi|3 : ttTGAAGA-ATTTAAGGTA-ATGATTAAGGCCAT----GTAAAG-CTCCCAT--TTTATA-AGGTG---TCAATATGGACACAA-TATA---GATCGTCT-----------TTATGTCTAT--CTCAGCAGAAATAT-----------------GA---C---AT-------C-CAAGGTCA----AAAGTCA-----ATGAATTCGAAAATT--------CCTTA----TTTGGGTAAAAC-ATTTACAAATA------T----GAAGC-------AAAAGT-TGC------TTAAGAAAATATAGA----ACTCGCA--CTTGCCTA---TATT-TC-A-AACT--TAAATATTTTGTGCAA-CTGTA---TCAACTGCAACTTTGGTA--------TAAAAA--T-----------------------C-T---ATGCAC-----------------------G--TAAAAT-----------TTCAA-----AACATGCC------ATTTTCTT---CTGAAACCCTTATAT-GTGATC--AA--------------CT-----TGTGGCTTT-----ATA-TA-CAGTTCTTATTAAT--TTAAACGATTT----TA---AGT--TTATTTTGAA--ATTaaaacatatgggtatagaacatttggcaacctctcacacttgtatatcttttacggctgtatttcttcaagtttggaatgaaaatggtacatgtgcaaatgcgtgctctaaagcagatatattttttttttctgaaatcataattttgttcaagttcacgaaaatcgtgtgacgttagacagttacattttatggtcgtggtcatataaattcactatgacaccatactatgttaacggttttagattattttgaaatttaagtgaaaatgggacc
gi|7 : GAAGG-AG--AAGATG-G-GATAAAGGCTTTTTAAATATTG-TCCCTGG--TT---TTATAAG---TCAATATGGACAAAAATGTAGATTATTATTGAGTAAAATTGATCATATCTAT--CTGAAAATGAGTATTGGTTTTAACTTA---AGAGATC---ATCAAAATTC-CGAATTtaatcgaaaatgggaatcacctgggacccttacgtgatttttcgtcctttgttcaat
gi|16 : AAGG-AA--AAGGTA-G-GATAAGGATAAT----GTATGGACTTGTAT--TT---G-AGAAGAAGTCGTCATAGGTAAAACTGTA---CATCATtcctcttttgtggatacagtgagatagaagtagcgggtgttgcttcaggaacgatagagcacaagcttgagtaatccctcaaactcatatattttatgcatcgttatcagctgaaactttgtgataacaatggtaca
gi|4 : ttgtaaATCATATATAA--CTCAAAATATGTGTCAGTTTTCACTTT---TAA---C---AT----ATTC-TAAGTTCACAGGAAGATTACAAAGTT-AAT--GAAAATCCCGAATTTTCTCA---TTTTTGTCAAAAG-AGT-----G-ACAAATTT----GAAGC-------ATATAT-TAC------TTCAGAAAATATTGCGTG--C--ACA--CTTG--------CTC------AACT----------------AT-C--------CAGTTGCAACTTTGGTA--------TAAAAA--TTG-----C----AT--------GCTTC--ATGTTT--T------C---------CATAG--CGCACTGTATGC------------AAAAAT-TGCCA-------TTTCCT---CTA-------TACAT-CTGCGC--------ATG-C----TC-----------TTTT-AGACATTATAGCT-TTCACGATTGCGATTATGT-ATTTGTA-CA---AAGTATCATCTTGCA--A
gi|9 : taagTCTAATAATCAA------TCTCGGTTT-AATACT---TGA---C---AT-----TTC-TAAGTTCACACGATGATGACAAATTTTAAT--GAAATGTTCGAACTTCCCCA----TTTTTGCCAGTT-ATT-----G-AAATT--T----GAAAA-------ATACAT-T-CATTTGCTTCACAAAATATAGA----AC--ACAGTCTTTCTTA---CCTT-TC-A-AAGT--TACGTATCTTGTACAC-CTGTA---TCAATT-CAATT
gi|14 : attatgtgcaA---AAA---CTTTAT----AT------GTTCACA---AGGTCTTCAAGTT-AGT--GGAAATTTTAA-TTTCCTCT---TTTTTGGCCAAAA-ATT-----A-A------C----GAAAC-------GTACGC-TAC------TTCTTG
gi|10 : ---C---AT----ATTC-CATGTTCA-GGGAATGTAACAA----------------TCCGAATTTCCTTATACATGTAGGTAAAA--ATC-----G-A------C-----CAGCGAGAGGAATATATGC-C------TTCA-GACA-ACACAGAGCAC--ACA--CTCGCCTA---CCT--ATCA-AACT--TACATAT-TTG
gi|17 : GTTCACAGGAAGGTCACAAAGTT-AAT--GAAAGTTCCGAATTTTCTTA---AT----GACAAACTATT-----G-A------gaataagaatggtatataggcaaatgcatgttccatgttttctaaa
gi|7 : AGAGAT-CAT--CAAAATTCCGAATTTCCTC-----TTTTGTGGATAC-AGT-----G-AGA----TAGAAGTAGC-------GGGTGT-TGC------TTCAGGAA---C-GATAGAGC--ACAAGCTTGAGTAATCCCTC-A----AACT--CATATATTTTATGCAT-CGTTA---TCAGCTGAAACTTTGTGA--------TAACAA--TGGT---AC----Agaaattcttaagtacatgt
gi|8 : gaaggagaagatgggataaaggctttttaaatattgtccctggttttataagtcaatatggacaaaaatgtagattattattgagtaaaattgatcatatctatctgaaaatgagtattggttttaacttaATACGGAGAAA-----CA--TTTGCCTT---CCTA-TT-A-AACT--TA-GTGTTTTATACAC-C---------AGCTGCAAATTTGGTA--------TAAA-A--TAGT---ACATCAATAGTTTTTGGT-TA--TT---T--T------T---------TAAAAAACAAAATATGTGT-AACTTTT----AAAAAAA----AAATAAAGTT-ATT---CAGAAACAA-TA-ATATTGCT-----------AACA----CC-----TG---------G-CATT--A-CA-CCCATAGTCGTGATTACGT-ATTTCT---------GCA---------A--ATACATTCCTACAAGGTTTTACTGTTTT-A-A----GT-----------GG--ATAACGGGGGCT-ACA-GGGACCCTTATCCTACCTTG
gi|5 : AGAGCAT--ACA--CTTGCCTA---CTT--AT-CTAACT--TACATATTTAGTACACACTTGACACTTGGCTGCAACTTTGGTACATTGTATTAAATAGGTAGGCAAAT----ATAT------ACATATCATCCAT--TTGCTTTC---------CAAAG--TAAAATATATG-AATGTTTCTAGAATCAA---GCCAT------TTTCTT---CTGAAACCT-GAAAA-TTGCTC--AAATATGTTACT--ATCT-----TGT-GTTTTA--TTACT-TG-CA-TTCATAATTATAATGATAT-ATCATTATTC---AGTCAACACCTTGAAATATTAGTCT----AAGGTTTCA-TGATTT-A-Acccttt
gi|6 : ttatagaatgttgtAT--ACA---TTGCCTA---CATCCAT-----CTTTG-CATATTTTCTACAC-CAGAA---TCAGCTGCAACTTTGGTG--------TAAAAA--TGAT---AC----AAAG------GC-AA--ACGTATGCT------CGATATTTAACAAAG--CAAAATGTAAGTAGAATTT----AAAAGGTTTGCC------ATTTTCGG---CGTAAATCA-TAAAT-TT--T-----AT---TG-----ATTT-----TGTGACCTT-GGTTA---TA-CA-TT-----TC-------TAT--TTTCTA-T----CGGCATCATCT-------------------AGGCTGTACGATTCT-A-AATCCGTTTTGAAATATAAGTGAAAAT-GGGAGCAACATAG-ACCCTTATCCTATC
gi|13 : aaaatataaattTGTATGTAACATTTTAT---GAAGTATGC-----A-ATTTTCTT---CTGAAACCC-AAAAT-TAAATT--AAAT--ATG-CATCATCTCAAAATAAGGTTTT--TTTATA-TA-CATTTCATGACTTTAGTC---T-ATTTTg
gi|2 : CAGATATATTTTTTTTTTCTGAAATCA-TAATT-TTGTTC--AAGTTCACGAAA--ATCG-----TGTGACGTT-AGACAGT-TA-CATTTTATGGTCGTGGTCATAT-AAATTCACTA---TGACACCAT--------ACTA--TGTTA---------ACGGTTTT-AGAT--TATTTTGAAATTTAAGTGAAAAT-GGGACC-gaaatttaattgaa
gi|12 : ttttgaaagcagaaggtaggataagggacatatattacccgattttcagaattcatcatgaacaaaattgtaaaccattatttagtaatgagataatatttatccattttagtatatctaatattcaaaagctcacaggaaaatgacaaagtaaatggaaattccgaatttaaaacatatgggtatagaacatttggcaacctctcacacttgtatatcttttacggctgtatttcttcaagtttggaatgaaaatggtacatgtgcaaatgcgtgctctaaag-TATAT-TT-TTCCGAAATCTATGACA--TTTT-----TGTGGCTG-AAGCCCCT-TA-CA-TTTAT---TGTAATTATAT-ATTTCTA-TATTAAAGCATTACCTTGAT--TTTAACT------AAGTTTCACAGTTTT-A-AGTCTATCATAAAATT
gi|18 : AAGTTTCACGGTTTTGA-AT-CCATTTTGAAATCTAAGATAAACTGGAGGTC-ACATGG
gi|3 : ctTTTT-A-AGTTTATTTTGAAATTTAATCGAAAATGGGAATC-ACCTGGGACCCTTtcccgtatatcctatgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAGTTCAACGTTAATGAATATTCCGAATTTCCTCATCTTGGATAGAAGAATCGGCATATCAGAAGCATGTACTGTATTTTGCTTTAGAAAGT
Alignments
lowQualScore : 11111 111 222222 44444444444 222222 11111 1111111 666666666666666666 111111 33333 11 111 1111111 1111111111111 111 66666666666666666666666666666666666666 111111 55555555555555555555555555555 333333333333333333333333333333333333333333333333 1 11 11111 4444444444444444444444444
lowQualScore : 6 99 6 6 66666 1 6 1 222 111111 1 5 5 0 0 33333333333 0 22 7 0 0 8 1 1 555555 6 1 4 777 11 4 4 11111 3333333 11 1 000000000000000000 0 33 3 999999 1 33333 11 4 222 4 3 1 3 44 9999999 1 9999 66 4 1 5555555555555 222 44444444444444444444444444444444444444 1 0 888888 11111111111111111111111111111 66 11 222222222222222222222222222222222222222222222222 4 3 4 55 5 0 11 88 44444 000 0 9999999999999999999999999 6 222 44 1 0 8
lowQualScore : . .. . . ..... . . . ... ...... . . . . . ........... . .. . . . . . . ...... . . . ... .. . . ..... ....... .. . .................. . .. . ...... . ..... .. . ... . . . . .. ....... . .... .. . . ............. ... ...................................... . . ...... ............................. .. .. ................................................ . . . .. . . .. .. ..... ... . ......................... . ... .. . . .
lowQualScore : 7 22 7 7 33333 0 3 0 777 888888 0 2 2 8 6 22222222222 7 00 9 3 3 9 4 9 999999 2 7 4 666 00 1 0 44444 4444444 11 9 111111111111111111 2 44 1 000000 4 77777 00 0 999 0 2 4 2 77 1111111 6 4444 11 7 8 9999999999999 444 66666666666666666666666666666666666666 4 4 666666 66666666666666666666666666666 11 00 444444444444444444444444444444444444444444444444 4 3 7 66 0 9 99 44 88888 555 7 9999999999999999999999999 4 555 77 0 8 0
consensus : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTCCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA---A-------ATCATGTCTATCTNAAAATAAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTT-ACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------GCN--T--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGCCACATGGGACCCT-TATCCTACCTTG
Reference ( family-651 ) : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----GTATNGCCCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA---A---C---ATCATGTCTANNTCAAAATAAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATACAGAGAG-ACACA--CTTGCCT-ACCTCNTAAACTT-ACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-TAAT-------------------GCA--T--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCNTAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAANTCTATTTTGAAATTTAAGCGAAAATGGGGACCACATGGGACCCT-TATCCTACCTTG
gi|1 : GTTGAAGG-AG--AAGGTA-G-GATAAAAGCCAT----ATATTGTTTCCA-A-TT----G--AGGAGTCATCATGGACAAAACTCCA---CATCATTTAGTAAGCCA---C---ATCATGTCTAAATCAAAACAAGTATCAGTTTTAACATA---AAACATATTCCAA-GTTCACAGGAAGGTCATAAAGAT-AATGAAAATTTTGACTTTCCTCAA-T---TTTGGCCAAACATT-A-----A----T-----GCAGCATATGTT------CTTCATGAAATACAGAGAGAACACA--CTTGCCT-ACCTCATAAACTG-ACATATATTGTACAC-CTGTA---TCAGCTACAACTTTGGTATA----A--ATATGGGAC----ATAG-----GC-TAAT-------------------GAA--T--TC---------CAAAGCAAAATGTATGTAA-A-ATTTCAACAA-AAAAT-ATGCCATATATAT---TTTCTTCTGAAACCCTACATTTACTCAAATAAATG--A-CA--ATCC-----TGTGGTTTTAAGTCATT-TA-CA-TTCATGATCATGA-TCATAT--ATTT-TTA---TAAGGCATCATTTTGAA--A-TTAACT----TTTACA-AAGTTTCACTGTTTTAATGCTGTTTTGAAATTTAGGCAAAAATAGGGATCACATGGAACCCT-TGTTCTACCTTG
gi|10 : CATATTCCAT-GTTCA-GGGAATGTAACAA--------------TCCGAATTTCCTT-A-TACATGTAGGTAAAAATCGA-----C----CAGCGAGAGGAATATATG-----CCTTCAGACAACACAGAGC--ACACA--CTCGCCT-ACCTATCAAACTT-ACATA------------------------------TTTGGAATA----A--GAATGGTAT----ATAG-----GC-AAAT-------------------GCATGT--TC---------CAttcat
gi|11 : GCTAAAGG-AG--AAAGTGTG-GATAAGGGCCTT----TTGTGGTCTCCA-T-TTT---A--AAAAGTCAGCATAATTGAAACTGTAGGTCATTATTTGGTCA---A---CCATATCATGTCTATATGGAAATTAGTACC-ATTTTACCAT-----GACATAtgttttctaaa
gi|12 : ttT--ATG--A-CA--TTTT-----TGTGGCTGA-AGCCCCT-TA-CA-TTTAT---TGTAA-TTATAT--ATTT-CTATATTAAAGCATTACCTTGAT--T-TTAA------CT-----AAGTTTCACAGTTTTAAGTCTATCATAAAATTc
gi|13 : tatatttttccgaaatcTGTATGT-A-ACATTTT----ATGAAGT-ATGC---A---AT---TTTCTTCTGAAACCCAAAATTAAATTAAAT--ATG----CATCATCTCAAAATAAGGTTTT--TTTATA-TA-CATTTCATGA
gi|13 : GCATCATCTCAAA--A-T-AAGGTTTTTTTATATACATTTCATGACTTTA-GTCTATTTTGAAATTTAATTGAActttagtctattttgaaatttaattgaa
gi|14 : tgtatgtaacattttatgaagtatgcaattttcttctgaaacccaaaattaaattaaatat-GTTCACA---AGGTCTTCAAGTT-AGTGGAAATTTT-AATTTCCTCTT-T---TTTGGCCAAAAATT-A-----A----C-----GAAACGTACGCT-----ACTTC
gi|15 : aaaactttatatCAACGTT-AATGAATATTCCGAATTTCCTC-A-T---CTTGGttg
gi|16 : aagttAAGG-AA--AAGGTA-G-GATAAGGATAAT----GTATGG-ACTTG-TATTTGAGA--AGAAGTCGTCATAGGTAAAACTGTACATCATatagaagaatcggcatatcagaagcatgtactgtattttgctttagaaagt
gi|17 : ttgtaa-GTTCACAGGAAGGTCACAAAGTT-AATGAAAGTTCCGAATTTTCTT-A------ATGACAAACTATTGA-----
gi|18 : -AAGTTTCACGGTTTTGAATCCATTTTGAAATCTAAGATAAACTGGAGGTCACATGGTCCCGTATATCCTAgaaattcttaagtacatgt
gi|2 : ctTGAAAGCAG--AAGGTA-G-GATAAGGGACAT----ATATTACCC--GAT-TTT---C--AGAATTCATCATGAACAAAATTGTAAACCATTATTTAGTAA---------------TG---AGAT---AATATTTATCCATTTTAGTATATCTA---ATATTCAAAAGCTCACAGGAAAATGACAAAGTA-AATG--------GAAATTCCGA-A-T---TT----AAAACAT--------------------------ATG-------------GG---TATAGA------ACA--TTTGGCA-ACCTCTCACACTT-GTATATCTTTTACGG-CTGTA---TT-TCTTCAAGTTTGGAATG----A--AAATGGTAC----ATGT-----GC-AAAT-------------------GCG--TGCTC---------TAAAGCAGA---TAT-------ATTT-------------------------T---TTTTTTCTGAAATCATAATTTTGTTCAAGTTCACG--A-AA--ATCG-----TGTGACGTT-AGACAGT-TA-CATTTTATGGTCGTGG-TCATATAAATTCACTA---T--GACACCAT--------A-CTAT------GTTA----------ACGGTTTTAGAT-TATTTTGAAATTTAAGTGAAAAT-GGGACCtgt
gi|3 : tttTGAAGA-ATTTAAGGTA-ATGATTAAGGCCAT----GTAAAGCTCCCA-T-TTT---ATAAGGTGTCAATATGGACACAA-TATAGATCGTC-TTTA-------------------TGTCTATCTCAGCAGAAATAT-----------------GACAT---CCAA-GGTCA------------AAAGTC-AATGAA--TTCGAAAATTCCTT-A-T---TTGGGTAAAACATTTACAAATA----T-----GAAGCAAAAGTT-----GCTTAAGAAAATATAGA-AC-TCGCA--CTTGCCT-ATATTTCAAACTT-AAATATTTTGTGCAA-CTGTA---TCAACTGCAACTTTGGTATA----A--AAAT-------------------C-T-AT-------------------GC--------------------------ACGTA----A-A-ATTTC------AAAAC-ATGCC------AT---TTTCTTCTGAAACC---------CTTATAT--GTG--ATCA--A-CT-----TGTGGCTTT-----ATA-TA-CAGTTC-TTAT--TAATTTAAACG-ATTT-------TAAGT--TTATTTTGAA--ATTTAA------TCGA-A-A
gi|3 : TCTT-----A-TTAA------TTTA-A-A-------CGATTTTAAGTTTATTTTGAAATTTAATCGAAAATGGGAATCACCTGGGACCCT-TAatgggaatcacctgggacccttacgtgatttttcgtcctttgttcaat
gi|4 : tgaagaatttaaggtaatgattaaggccatgtaaagctcccattttataaggtgtcaatatggacacaatatagatcgtctttatgtctatctcagcagaaatatgacatccaaggtcaaaagtcaatgaattcgaaaattccttatttgggtaaaacatttacaaatatgaagcaaaagttgcttaagaaaatatagaactcgcacttgcctatatttcaaacttaaatattttgtgcaactgtatcaactgcaactttggtataaaaatctatgcacgtaaaatttcaaaacatgccattttcttctgaaacccttatatgtgatcaacttgtggctttatatacagtA---A---G---ATCATATATAACTCAAAATATGTGTCAGTTTTCACTTT---TAACATATTCTAA-GTTCACAGGAAGATTACAAAGTT-AATGAAAATCCCGAATTTTCTC-ATT---TTTGTCAAAAGAGTGAC----AAATTT-----GAAGCATATATT-----ACTTCAGAAAATATTGCGTG--CACA--CTTG------CTC---AACT---------------AT-C--------CAGTTGCAACTTTGGTATA----A--AAAT--TGC----AT-------GCTTCAT-------------------GTT--T--TC---------CATAGCGCACTGTATG----------C----A-AAAAT--TGCCA----------TTTCCTCT------ATACATCTGCGC------ATG----C----TCT-----------TTT-AGACATTATAGCT-TTCACGATTGCGA-TTATGT--ATTT-GTA---CAAAGTATCATCTTGCA--A-cgtgatttttcgtcctttgttcaat
gi|5 : tAGAGCATACA--CTTGCCT-ACTTATCTAACTT-ACATATTTAGTACACACTTGACACTTGGCTGCAACTTTGGTACATTGTATTAAATAG-------GTAG-----GC-AAATATATACATATCATCCATTTGCT--T--TC---------CAAAGTAAAATATATGA-A-T-GTTTC----T-AGAATCAAGCCA------T---TTTCTTCTGAAACCTGAAAATTGCTCAAAT--ATGTTA-CT--ATCT-----TGT-GTTTT-A-TTACT-TG-CA-TTCATAATTATAA-TGATAT--ATCA-TTAT--TCAGTCAACACCTTGAAATA-TTAG------TCT--A-AGGTTTCATGATTT
gi|6 : ttatagaatgttgt-ATACA---TTGCCT-ACATCC--ATCTTTGCATATTTTCTACAC-CAGAA---TCAGCTGCAACTTTGGTGTA----A--AAATGATAC----AAAG-----GC-AAAC-------------------GTA--TGCTCGATATTTAACAAAGCAAAATGTAAGT-AGA-ATTTA----A-AAGGT-TTGCC------AT---TTTCGGCGTAAATCATAAATTT-------T--AT-----TG--ATTT-----TGTGACCTT-GGTTA---TA-CA-TT-----TC------TAT-----TTT-CTA---T-CGGCATCATCT-------------------------AGGCTGTACGATTCTAAATCCGTTTTGAAATATAAGTGAAAATGGGAGCAACAT-AGACCCT-TATCCTATCaa
gi|7 : aaaatataaattGAAGG-AG--AAGATG-G-GATAAAGGCTTTTTAAATATTGTCCCTG-G-TTT---T--ATAAGTCAATATGGACAAAAATGTAGATTATTATTGAGTAA---AATTG---ATCATATCTATCTGAAAATGAGTATTGGTTTTAACTTA---AGAGA-----------TCAT----------CAAAATT-----------CCGAATTTCCTC---T---TTTGTGGATACAGTGAGATAGA----A-----GTAGCGGGTGTT-----GCTTCAGGAACGATAGAG----CACAAGCTTGAGTAATCCCTCAAACTC-ATATATTTTATGCAT-CGTTA---TCAGCTGAAACTTTGTGATA----A--CAATGGTAC----Ag
gi|8 : ATACGGAGAA-ACAT----TTGCCT-TCCTATTAAACTT-A-GTGTTTTATACAC-C---------AGCTGCAAATTTGGTAT-----A--AAATAGTACATCAATAGTTTTTGG-TTAT-------------------TTT--T--TA---------AAAAACAAAATATGTGT-A-A-CTTTT----A-AAAAA-A----A-A---ATAAAGTTATTCAGAAACAATAATATTGC---------TA--A-C---ACCT----------------GGCA-T-TA-CA-CCCATAGTCGTGA-TTACGT--ATTT-CTG---CAA---AT-------AC--A-TT--------CCTACA-AGGTTTTACTGTTTTAAG-------TG----------GATAACGGGGGCTACA-GGGACCCT-TATCCTACCTTG
gi|9 : ---ATTATGTGCATCTAATAATCAATCTCGGTTT-AATACT---TGACAT-TTCTAA-GTTCACACGATGATGACAAATTTTAATGAAATGTTCGAACTTCCCC-A-T---TTTTGCCAGTTATTGA-----AATT-T-----GAAAAATACATTCATTTGCTTCACAAAATATAGA----ACACAGTCTTTCTT-ACCTTTCAAAGTT-ACGTATCTTGTACAC-CTGTA---TCAATT-CAATTcccttt
Alignments
lowQualScore : 11111 111 222222 44444 222222 1111111 666666666666666666 111111 33333 11 1111111 1111111111111 66666666666666666666666666666666666666 111111 55555555555555555555555555555 333333333333333333333333333333333333333333333333 1 11 11111 4444444444444444444444444
lowQualScore : 6 99 6 6 44444 7 55 666 111111 1 5 5 0 44444 0 66 1 0 0 8 1 1 555555 6 1 4 777 11 4 4 888 3333333 11 1 000000000000000000 0 33 3 999999 0 66666 11 4 0 3 1 3 55 3333333 1 9999 66 4 1 5555555555555 999 11111111111111111111111111111111111111 1 0 888888 11111111111111111111111111111 66 11 222222222222222222222222222222222222222222222222 4 3 4 55 5 0 11 88 44444 000 0 9999999999999999999999999 6 11 44 0 8
lowQualScore : . .. . . ..... . .. ... ...... . . . . ..... . .. . . . . . . ...... . . . ... .. . . ... ....... .. . .................. . .. . ...... . ..... .. . . . . . .. ....... . .... .. . . ............. ... ...................................... . . ...... ............................. .. .. ................................................ . . . .. . . .. .. ..... ... . ......................... . .. .. . .
lowQualScore : 7 22 7 7 55555 5 33 555 888888 0 2 2 8 66666 7 11 0 6 3 9 4 9 999999 2 7 4 666 00 1 0 777 4444444 11 9 111111111111111111 2 44 1 000000 1 99999 00 0 7 2 4 2 66 4444444 6 4444 11 7 8 9999999999999 444 88888888888888888888888888888888888888 4 4 666666 66666666666666666666666666666 66 00 444444444444444444444444444444444444444444444444 4 3 7 66 0 9 99 44 88888 555 7 9999999999999999999999999 4 55 77 8 0
consensus : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAAG----ATCATGTCTATCTNAAAATAAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------GC--GT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
Reference ( family-651 ) : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTCCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAAA----ATCATGTCTATCTNAAAATAAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------GC--NT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGCCACATGGGACCCT-TATCCTACCTTG
gi|1 : GTTGAAGG-AG--AAGGTA-G-GATAAAAGCCAT----ATATTGTTTCCA---ATT---G--AGGAGTCATCATGGACAAAACTCCA---CATCATTTAGTAAGCCACATCATGTCTAAATCAAAACAAGTATCAGTTTTAACATA---AAACATATTCCAA-GTTCACAGGAAGGTCATAAAGAT-AATGAAAATTTTGACTTTCCTCAA-T---TTTGGCCAAACATT-A-----A----T-----GCAGCATATGTT------CTTCATGAAATACAGAGAGAACACA--CTTGCCT-ACCTCATAAACTGACATATATTGTACAC-CTGTA---TCAGCTACAACTTTGGTATA----A--ATATGGGAC----ATAG-----GC-TAAT-------------------GA--AT--TC---------CAAAGCAAAATGTATGTAA-A-ATTTCAACAA-AAAAT-ATGCCATATATAT---TTTCTTCTGAAACCCTACATTTACTCAAATAAATG--A-CA--ATCC-----TGTGGTTTTAAGTCATT-TA-CA-TTCATGATCATGA-TCATAT--ATTT-TTA---TAAGGCATCATTTTGAA--A-TTAACT----TTTACA-AAGTTTCACTGTTTTAATGCTGTTTTGAAATTTAGGCAAAAATAGGGATCACATGGAACCCT-TGTTCTACCTTG
gi|10 : CATATTCCAT-GTTCA-GGGAATGTAACAA--------------TCCGAATTTCCTT-A-TACATGTAGGTAAAAATCGA-----C----CAGCGAGAGGAATATATG-----CCTTCAGACAACACAGAGC--ACACA--CTCGCCT-ACCTATCAAACTTACATA------------------------------TTTGGAATA----A--GAATGGTAT----ATAG-----GC-AAAT-------------------GCATGT--TC---------CAttcat
gi|11 : GCTAAAGG-AG--AAAGTGTG-GATAAGGGCCTT----TTGTGGTCTCCA-T-TTT---A--AAAAGTCAGCATAATTGAAACTGTAGGTCATTATTTGGTCAACCATATCATGTCTATATGGAAATTAGTACC-ATTTTACCAT-----GACATAtgttttctaaa
gi|12 : ttT--ATG--A-CA--TTTT-----TGTGGCTGA-AGCCCCT-TA-CA-TTTAT---TGTAA-TTATAT--ATTT-CTATATTAAAGCATTACCTTGAT--T-TTAA------CT-----AAGTTTCACAGTTTTAAGTCTATCATAAAATTc
gi|13 : tatatttttccgaaatcTGTATGT-A-ACATTTT----ATGAAGT-ATGC---A---AT---TTTCTTCTGAAACCCAAAATTAAATTAAAT--ATG----CATCATCTCAAAATAAGGTTTT--TTTATA-TA-CATTTCATGA
gi|13 : GCATCATCTCAAA--A-T-AAGGTTTTTTTATATACATTTCATGACTTTA-GTCTATTTTGAAATTTAATTGAActttagtctattttgaaatttaattgaa
gi|14 : tgtatgtaacattttatgaagtatgcaattttcttctgaaacccaaaattaaattaaatat-GTTCACA---AGGTCTTCAAGTT-AGTGGAAATTTT-AATTTCCTCTT-T---TTTGGCCAAAAATT-A-----A----C-----GAAACGTACGCT-----ACTTC
gi|15 : aaaactttatatCAACGTT-AATGAATATTCCGAATTTCCTC-A-T---CTTGGttg
gi|16 : aagttAAGG-AA--AAGGTA-G-GATAAGGATAAT----GTATGG-ACTTG-TATTTGAGA--AGAAGTCGTCATAGGTAAAACTGTACATCATatagaagaatcggcatatcagaagcatgtactgtattttgctttagaaagt
gi|17 : ttgtaa-GTTCACAGGAAGGTCACAAAGTT-AATGAAAGTTCCGAATTTTCTT-A------ATGACAAACTATTGA-----
gi|18 : -AAGTTTCACGGTTTTGAATCCATTTTGAAATCTAAGATAAACTGGAGGTCACATGGTCCCGTATATCCTAgaaattcttaagtacatgt
gi|2 : ctTGAAAGCAG--AAGGTA-G-GATAAGGGACAT----ATAT--TACCCGAT-TTT---C--AGAATTCATCATGAACAAAATTGTAAACCATTATTTAGTAA---------TG---A---GATAATATTTATCCATTTTAGTATATCTA---ATATTCAAAAGCTCACAGGAAAATGACAAAGTA-AATGGAAA--------TTCCGA-A-T---TT----AAAACAT--------------------------ATG-------------GG---TATAGA------ACA--TTTGGCA-ACCTCTCACACTTGTATATCTTTTACGG-CTGTA---TT-TCTTCAAGTTTGGAATG----A--AAATGGTAC----ATGT-----GC-AAAT-------------------GC--GTGCTC---------TAAAGCAGA---TAT-------ATTT-------------------------T---TTTTTTCTGAAATCATAATTTTGTTCAAGTTCACG--A-AA--ATCG-----TGTGACGTT-AGACAGT-TA-CATTTTATGGTCGTGG-TCATATAAATTCACTA---T--GACACCAT--------A-CTAT------GTTA----------ACGGTTTTAGAT-TATTTTGAAATTTAAGTGAAAATGGGtgt
gi|3 : tttTGAAGA-ATTTAAGGTA-ATGATTAAGGCCAT----GTAAAGCTCCCA-T-TTT---ATAAGGTGTCAATATGGACACAA-TATAGATCGTC-TTTA-------------TGTCTATCTCAGCAGAAATAT-----------------GACAT---CCAA-GGTCA------------AAAGTC-AATGAA--TTCGAAAATTCCTT-A-T---TTGGGTAAAACATTTACAAATA----T-----GAAGCAAAAGTT-----GCTTAAGAAAATATAGA-AC-TCGCA--CTTGCCT-ATATTTCAAACTTAAATATTTTGTGCAA-CTGTA---TCAACTGCAACTTTGGTATA----A--AAAT-------------------C-T-AT-------------------GC--------------------------ACGTA----A-A-ATTTC------AAAAC-ATGCC------AT---TTTCTTCTGAAACC---------CTTATAT--GTG--ATCA--A-CT-----TGTGGCTTT-----ATA-TA-CAGTTC-TTAT--TAATTTAAACG-ATTT-------TAAGT--TTATTTTGAA--ATTTAA------TCGA-A-Aacc
gi|3 : TCTT-----A-TTAA------TTTA-A-A-------CGATTTTAAGTTTATTTTGAAATTTAATCGAAAATGGGAATCACCTGGGACCCT-TAatgggaatcacctgggacccttacgtgatttttcgtcctttgttcaat
gi|4 : tgaagaatttaaggtaatgattaaggccatgtaaagctcccattttataaggtgtcaatatggacacaatatagatcgtctttatgtctatctcagcagaaatatgacatccaaggtcaaaagtcaatgaattcgaaaattccttatttgggtaaaacatttacaaatatgaagcaaaagttgcttaagaaaatatagaactcgcacttgcctatatttcaaacttaaatattttgtgcaactgtatcaactgcaactttggtataaaaatctatgcacgtaaaatttcaaaacatgccattttcttctgaaacccttatatgtgatcaacttgtggctttatatacagtTAAG----ATCATATATAACTCAAAATATGTGTCAGTTTTCACTTT---TAACATATTCTAA-GTTCACAGGAAGATTACAAAGTT-AATGAAAATCCCGAATTTTCTC-ATT---TTTGTCAAAAGAGTGAC----AAATTT-----GAAGCATATATT-----ACTTCAGAAAATATTGCGTG--CACA--CTTG--------CTCAA--------------------CTAT----CCAGTTGCAACTTTGGTATA----A--AAAT--TGC----AT-------GCTTCAT-------------------GT--TT--TC---------CATAGCGCACTGTATG----------C----A-AAAAT--TGCCA----------TTTCCTCT------ATACATCTGCGC------ATG----C----TCT-----------TTT-AGACATTATAGCT-TTCACGATTGCGA-TTATGT--ATTT-GTA---CAAAGTATCATCTTGCA--A-cgtgatttttcgtcctttgttcaat
gi|5 : AGAGCATACA--CTTGCCT-ACTTATCTAACTTACATATTTAGTACACACTTGACACTTGGCTGCAACTTTGGTACATTGTATTAAATAG-------GTAG-----GC-AAATATATACATATCATCCATTTGC--TT--TC---------CAAAGTAAAATATATGA-A-T-GTTTC----T-AGAATCAAGCCA------T---TTTCTTCTGAAACCTGAAAATTGCTCAAAT--ATGTTA-CT--ATCT-----TGT-GTTTT-A-TTACT-TG-CA-TTCATAATTATAA-TGATAT--ATCA-TTAT--TCAGTCAACACCTTGAAATA-TTAG------TCT--A-AGGTTTCATGATTT
gi|6 : ttatagaatgttgtAAATATAAAT-T-ATACA---TTGCCT-ACATC-CATCTTTGCATATTTTCTACAC-CAGAA---TCAGCTGCAACTTTGGTGTA----A--AAATGATAC----AAAG-----GC-AAAC-------------------GT--ATGCTCGATATTTAACAAAGCAAAATGTAAGT-AGA-ATTTA----A-AAGGT-TTGCC------AT---TTTCGGCGTAAATCATAAATTT-------T--AT-----TG--ATTT-----TGTGACCTT-GGTTA---TA-CA-TT-----TC------TAT-----TTT-CTA---T-CGGCATCATCT-------------------------AGGCTGTACGATTCTAAATCCGTTTTGAAATATAAGTGAAAATGGGAGCAACAT-AGACCCT-TATCCTATCaa
gi|7 : aGAAGG-AG--AAGATG-G-GATAAAGGCTTTTTAAATATTGTCCCTG-G-TTT---T--ATAAGTCAATATGGACAAAAATGTAGATTATTATTGAGTAAAATTGATCATATCTATCTGAAAATGAGTATTGGTTTTAACTTA---AGAGA-----------TCAT----------CAAAATT-----------CCGAATTTCCTC---T---TTTGTGGATACAGTGAGATAGA----A-----GTAGCGGGTGTT-----GCTTCAGGAACGATAGAG----CACAAGCTTGAGTAATCCCTCAAACTCATATATTTTATGCAT-CGTTA---TCAGCTGAAACTTTGTGATA----A--CAATGGTAC----Ag
gi|8 : ATACGGAG-AAACA--TTTGCCT-TCCTATTAAACTTA-GTGTTTTATACAC-C---------AGCTGCAAATTTGGTAT-----A--AAATAGTACATCAATAGTTTTTGG-TTAT-------------------TT--TT--TA---------AAAAACAAAATATGTGT-A-A-CTTTT----A-AAAAA-A----A-A---ATAAAGTTATTCAGAAACAATAATATTGC---------TA--A-C---ACCT----------------GGCA-T-TA-CA-CCCATAGTCGTGA-TTACGT--ATTT-CTG---CAA---AT-------AC--A-TT--------CCTACA-AGGTTTTACTGTTTTAAG-------TG----------GATAACGGGGGCTACA-GGGACCCT-TATCCTACCTTG
gi|9 : ----ATTATGTGCATCTAATAATCAATCTCGGTTT-AATACT---TGACAT-TTCTAA-GTTCACACGATGATGACAAATTTTAATGAAATGTTCGAACTTCCCC-A-T---TTTTGCCAGTTATTGA-----AATT-T-----GAAAAATACATTCATTTGCTTCACAAAATATAGA----ACACAGTCTTTCTT-ACCTTTCAAAGTTACGTATCTTGTACAC-CTGTA---TCAATT-CAATTcccttt
Alignments
lowQualScore : 11111 111 222222 444444444 11 222222 1111111 666666666666666666 111111 33333 11 1111111 1111111111111 6666666666666666666666666666666666666666 111111 55555555555555555555555555555 333333333333333333333333333333333333333333333333 1 11 11111 4444444444444444444444444
lowQualScore : 6 99 6 6 44444 7 22 666 111111 1 5 5 0 777777777 111 3 11 1 1 555555 6 1 4 777 11 4 4 888 3333333 11 1 000000000000000000 0 33 3 999999 0 66666 11 4 0 3 1 3 55 3333333 1 9999 66 4 1 5555555555555 999 5555555555555555555555555555555555555555 1 0 888888 11111111111111111111111111111 66 11 222222222222222222222222222222222222222222222222 4 3 4 55 5 0 11 88 44444 000 0 9999999999999999999999999 6 11 44 0 8
lowQualScore : . .. . . ..... . .. ... ...... . . . . ......... ... . .. . . ...... . . . ... .. . . ... ....... .. . .................. . .. . ...... . ..... .. . . . . . .. ....... . .... .. . . ............. ... ........................................ . . ...... ............................. .. .. ................................................ . . . .. . . .. .. ..... ... . ......................... . .. .. . .
lowQualScore : 7 22 7 7 55555 5 77 555 888888 0 2 2 8 000000000 444 7 99 4 9 999999 2 7 4 666 00 1 0 777 4444444 11 9 111111111111111111 2 44 1 000000 1 99999 00 0 7 2 4 2 66 4444444 6 4444 11 7 8 9999999999999 444 4444444444444444444444444444444444444444 4 4 666666 66666666666666666666666666666 66 00 444444444444444444444444444444444444444444444444 4 3 7 66 0 9 99 44 88888 555 7 9999999999999999999999999 4 55 77 8 0
consensus : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------G--C--GT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
Reference ( family-651 ) : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA----G----ATCATGTCTATCTNAAAATAAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------G--C--GT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
gi|1 : GTTGAAGG-AG--AAGGTA-G-GATAAAAGCCAT----ATATTGTTTCCA---ATT---G--AGGAGTCATCATGGACAAAACTCCA---CATCATTTAGTAA----GCCACATCATGTCTAAATCAAAACAAGTATCAGTTTTAACATA---AAACATATTCCAA-GTTCACAGGAAGGTCATAAAGAT-AATGAAAATTTTGACTTTCCTCAA-T---TTTGGCCAAACATT-A-----A----T-----GCAGCATATGTT------CTTCATGAAATACAGAGAGAACACA--CTTGCCT-ACCTCATAAACTGACATATATTGTACAC-CTGTA---TCAGCTACAACTTTGGTATA----A--ATATGGGAC----ATAG-----GC-TAAT-------------------G--A--AT--TC---------CAAAGCAAAATGTATGTAA-A-ATTTCAACAA-AAAAT-ATGCCATATATAT---TTTCTTCTGAAACCCTACATTTACTCAAATAAATG--A-CA--ATCC-----TGTGGTTTTAAGTCATT-TA-CA-TTCATGATCATGA-TCATAT--ATTT-TTA---TAAGGCATCATTTTGAA--A-TTAACT----TTTACA-AAGTTTCACTGTTTTAATGCTGTTTTGAAATTTAGGCAAAAATAGGGATCACATGGAACCCT-TGTTCTACCTTG
gi|10 : CATATTCCAT-GTTCA-GGGAATGTAACAA--------------TCCGAATTTCCTT-A-TACATGTAGGTAAAAATCGA-----C----CAGCGAGAGGAATATATG-----CCTTCAGACAACACAGAGC--ACACA--CTCGCCT-ACCTATCAAACTTACATA------------------------------TTTGGAATA----A--GAATGGTAT----ATAG-----GC-AAAT-------------------G--CATGT--TC---------CAttcat
gi|11 : GCTAAAGG-AG--AAAGTGTG-GATAAGGGCCTT----TTGTGGTCTCCA-T-TTT---A--AAAAGTCAGCATAATTGAAACTGTAGGTCATTATTTGGTCA----ACCATATCATGTCTATATGGAAATTAGTACC-ATTTTACCAT-----GACATAtgttttctaaa
gi|12 : ttT--ATG--A-CA--TTTT-----TGTGGCTGA-AGCCCCT-TA-CA-TTTAT---TGTAA-TTATAT--ATTT-CTATATTAAAGCATTACCTTGAT--T-TTAA------CT-----AAGTTTCACAGTTTTAAGTCTATCATAAAATTc
gi|13 : tatatttttccgaaatcTGTATGT-A-ACATTTT----ATGAAGT-ATGC---A---AT---TTTCTTCTGAAACCCAAAATTAAATTAAAT--ATG----CATCATCTCAAAATAAGGTTTT--TTTATA-TA-CATTTCATGA
gi|13 : GCATCATCTCAAA--A-T-AAGGTTTTTTTATATACATTTCATGACTTTA-GTCTATTTTGAAATTTAATTGAActttagtctattttgaaatttaattgaa
gi|14 : tgtatgtaacattttatgaagtatgcaattttcttctgaaacccaaaattaaattaaatat-GTTCACA---AGGTCTTCAAGTT-AGTGGAAATTTT-AATTTCCTCTT-T---TTTGGCCAAAAATT-A-----A----C-----GAAACGTACGCT-----ACTTC
gi|15 : aaaactttatatCAACGTT-AATGAATATTCCGAATTTCCTC-A-T---CTTGGttg
gi|16 : aagttAAGG-AA--AAGGTA-G-GATAAGGATAAT----GTATGG-ACTTG-TATTTGAGA--AGAAGTCGTCATAGGTAAAACTGTACATCATatagaagaatcggcatatcagaagcatgtactgtattttgctttagaaagt
gi|17 : ttgtaa-GTTCACAGGAAGGTCACAAAGTT-AATGAAAGTTCCGAATTTTCTT-A------ATGACAAACTATTGA-----
gi|18 : -AAGTTTCACGGTTTTGAATCCATTTTGAAATCTAAGATAAACTGGAGGTCACATGGTCCCGTATATCCTAgaaattcttaagtacatgt
gi|2 : ctTGAAAGCAG--AAGGTA-G-GATAAGGGACAT----ATAT--TACCCGAT-TTT---C--AGAATTCATCATGAACAAAATTGTAAACCATTATTTAGTAATGA-G----ATAATATTTATCCA--------------TTTTAGTATATCTA---ATATTCAAAAGCTCACAGGAAAATGACAAAGTA-AATGGAAA--------TTCCGA-A-T---TT----AAAACAT--------------------------ATG-------------GG---TATAGA------ACA--TTTGGCA-ACCTCTCACACTTGTATATCTTTTACGG-CTGTA---TT-TCTTCAAGTTTGGAATG----A--AAATGGTAC----ATGT-----GC-AAAT-------------------G--C--GTGCTC---------TAAAGCAGA---TAT-------ATTT-------------------------T---TTTTTTCTGAAATCATAATTTTGTTCAAGTTCACG--A-AA--ATCG-----TGTGACGTT-AGACAGT-TA-CATTTTATGGTCGTGG-TCATATAAATTCACTA---T--GACACCAT--------A-CTAT------GTTA----------ACGGTTTTAGAT-TATTTTGAAATTTAAGTGAAAATGGGtgt
gi|3 : tttTGAAGA-ATTTAAGGTA-ATGATTAAGGCCAT----GTAAAGCTCCCA-T-TTT---ATAAGGTGTCAATATGGACACAA-TATAGATCGTC-TTTA-----------------TGTCTATCTCAGCAGAAATAT-----------------GACAT---CCAA-GGTCA------------AAAGTC-AATGAA--TTCGAAAATTCCTT-A-T---TTGGGTAAAACATTTACAAATA----T-----GAAGCAAAAGTT-----GCTTAAGAAAATATAGA-AC-TCGCA--CTTGCCT-ATATTTCAAACTTAAATATTTTGTGCAA-CTGTA---TCAACTGCAACTTTGGTATA----A--AAAT-------------------C-T-AT-------------------G--C--------------------------ACGTA----A-A-ATTTC------AAAAC-ATGCC------AT---TTTCTTCTGAAACC---------CTTATAT--GTG--ATCA--A-CT-----TGTGGCTTT-----ATA-TA-CAGTTC-TTAT--TAATTTAAACG-ATTT-------TAAGT--TTATTTTGAA--ATTTAA------TCGA-A-Aacc
gi|3 : TCTT-----A-TTAA------TTTA-A-A-------CGATTTTAAGTTTATTTTGAAATTTAATCGAAAATGGGAATCACCTGGGACCCT-TAatgggaatcacctgggacccttacgtgatttttcgtcctttgttcaat
gi|4 : tgaagaatttaaggtaatgattaaggccatgtaaagctcccattttataaggtgtcaatatggacacaatatagatcgtctttatgtctatctcagcagaaatatgacatccaaggtcaaaagtcaatgaattcgaaaattccttatttgggtaaaacatttacaaatatgaagcaaaagttgcttaagaaaatatagaactcgcacttgcctatatttcaaacttaaatattttgtgcaactgtatcaactgcaactttggtataaaaatctatgcacgtaaaatttcaaaacatgccattttcttctgaaacccttatatgtgatcaacttgtggctttatatacagtTAA----G----ATCATATATAACTCAAAATATGTGTCAGTTTTCACTTT---TAACATATTCTAA-GTTCACAGGAAGATTACAAAGTT-AATGAAAATCCCGAATTTTCTC-ATT---TTTGTCAAAAGAGTGAC----AAATTT-----GAAGCATATATT-----ACTTCAGAAAATATTGCGTG--CACA--CTTG--------CTCAA--------------------CTAT----CCAGTTGCAACTTTGGTATA----A--AAAT--TGC----AT-------GCTTCAT-------------------G--T--TT--TC---------CATAGCGCACTGTATG----------C----A-AAAAT--TGCCA----------TTTCCTCT------ATACATCTGCGC------ATG----C----TCT-----------TTT-AGACATTATAGCT-TTCACGATTGCGA-TTATGT--ATTT-GTA---CAAAGTATCATCTTGCA--A-cgtgatttttcgtcctttgttcaat
gi|5 : AGAGCATACA--CTTGCCT-ACTTATCTAACTTACATATTTAGTACACACTTGACACTTGGCTGCAACTTTGGTACATTGTATTAAATAG-------GTAG-----GC-AAATATATACATATCATCCATTTG--C--TT--TC---------CAAAGTAAAATATATGA-A-T-GTTTC----T-AGAATCAAGCCA------T---TTTCTTCTGAAACCTGAAAATTGCTCAAAT--ATGTTA-CT--ATCT-----TGT-GTTTT-A-TTACT-TG-CA-TTCATAATTATAA-TGATAT--ATCA-TTAT--TCAGTCAACACCTTGAAATA-TTAG------TCT--A-AGGTTTCATGATTT
gi|6 : ttatagaatgttgtAAATATAAAT-T-ATACA---TTGCCT-ACATC-CATCTTTGCATATTTTCTACAC-CAGAA---TCAGCTGCAACTTTGGTGTA----A--AAATGATAC----AAAG-----GC-AAAC-------------------GTAT--GC--TCGATATTTAACAAAGCAAAATGTAAGT-AGA-ATTTA----A-AAGGT-TTGCC------AT---TTTCGGCGTAAATCATAAATTT-------T--AT-----TG--ATTT-----TGTGACCTT-GGTTA---TA-CA-TT-----TC------TAT-----TTT-CTA---T-CGGCATCATCT-------------------------AGGCTGTACGATTCTAAATCCGTTTTGAAATATAAGTGAAAATGGGAGCAACAT-AGACCCT-TATCCTATCaa
gi|7 : aGAAGG-AG--AAGATG-G-GATAAAGGCTTTTTAAATATTGTCCCTG-G-TTT---T--ATAAGTCAATATGGACAAAAATGTAGATTATTATTGAGTAAAATTG----ATCATATCTATCTGAAAATGAGTATTGGTTTTAACTTA---AGAGA-----------TCAT----------CAAAATT-----------CCGAATTTCCTC---T---TTTGTGGATACAGTGAGATAGA----A-----GTAGCGGGTGTT-----GCTTCAGGAACGATAGAG----CACAAGCTTGAGTAATCCCTCAAACTCATATATTTTATGCAT-CGTTA---TCAGCTGAAACTTTGTGATA----A--CAATGGTAC----Ag
gi|8 : ATACGGAG-AAACA--TTTGCCT-TCCTATTAAACTTA-GTGTTTTATACAC-C---------AGCTGCAAATTTGGTAT-----A--AAATAGTACATCAATAGTTTTTGG-TTAT-------------------T--T--TT--TA---------AAAAACAAAATATGTGT-A-A-CTTTT----A-AAAAA-A----A-A---ATAAAGTTATTCAGAAACAATAATATTGC---------TA--A-C---ACCT----------------GGCA-T-TA-CA-CCCATAGTCGTGA-TTACGT--ATTT-CTG---CAA---AT-------AC--A-TT--------CCTACA-AGGTTTTACTGTTTTAAG-------TG----------GATAACGGGGGCTACA-GGGACCCT-TATCCTACCTTG
gi|9 : ----ATTATGTGCATCTAATAATCAATCTCGGTTT-AATACT---TGACAT-TTCTAA-GTTCACACGATGATGACAAATTTTAATGAAATGTTCGAACTTCCCC-A-T---TTTTGCCAGTTATTGA-----AATT-T-----GAAAAATACATTCATTTGCTTCACAAAATATAGA----ACACAGTCTTTCTT-ACCTTTCAAAGTTACGTATCTTGTACAC-CTGTA---TCAATT-CAATTcccttt
Alignments
lowQualScore : 11111 111 222222 444444444 11 222222 1111111 666666666666666666 111111 33333 11 1111111 1111111111111 6666666666666666666666666666666666666666 111111 55555555555555555555555555555 333333333333333333333333333333333333333333333333 1 11 11111 4444444444444444444444444
lowQualScore : 6 99 6 6 44444 7 22 666 111111 1 5 5 0 777777777 111 3 11 1 1 555555 6 1 4 777 11 4 4 888 3333333 11 1 000000000000000000 0 33 3 999999 0 66666 11 4 0 3 1 3 55 3333333 1 9999 66 4 1 5555555555555 999 5555555555555555555555555555555555555555 1 0 888888 11111111111111111111111111111 66 11 222222222222222222222222222222222222222222222222 4 3 4 55 5 0 11 88 44444 000 0 9999999999999999999999999 6 11 44 0 8
lowQualScore : . .. . . ..... . .. ... ...... . . . . ......... ... . .. . . ...... . . . ... .. . . ... ....... .. . .................. . .. . ...... . ..... .. . . . . . .. ....... . .... .. . . ............. ... ........................................ . . ...... ............................. .. .. ................................................ . . . .. . . .. .. ..... ... . ......................... . .. .. . .
lowQualScore : 7 22 7 7 55555 5 77 555 888888 0 2 2 8 000000000 444 0 99 4 9 999999 2 7 4 666 00 1 0 777 4444444 11 9 111111111111111111 2 44 1 000000 1 99999 00 0 7 2 4 2 66 4444444 6 4444 11 7 8 9999999999999 444 4444444444444444444444444444444444444444 4 4 666666 66666666666666666666666666666 66 00 444444444444444444444444444444444444444444444444 4 3 7 66 0 9 99 44 88888 555 7 9999999999999999999999999 4 55 77 8 0
consensus : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------G--C--GT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
Reference ( family-651 ) : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------G--C--GT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
gi|1 : GTTGAAGG-AG--AAGGTA-G-GATAAAAGCCAT----ATATTGTTTCCA---ATT---G--AGGAGTCATCATGGACAAAACTCCA---CATCATTTAGTAA----GCCACATCATGTCTAAATCAAAACAAGTATCAGTTTTAACATA---AAACATATTCCAA-GTTCACAGGAAGGTCATAAAGAT-AATGAAAATTTTGACTTTCCTCAA-T---TTTGGCCAAACATT-A-----A----T-----GCAGCATATGTT------CTTCATGAAATACAGAGAGAACACA--CTTGCCT-ACCTCATAAACTGACATATATTGTACAC-CTGTA---TCAGCTACAACTTTGGTATA----A--ATATGGGAC----ATAG-----GC-TAAT-------------------G--A--AT--TC---------CAAAGCAAAATGTATGTAA-A-ATTTCAACAA-AAAAT-ATGCCATATATAT---TTTCTTCTGAAACCCTACATTTACTCAAATAAATG--A-CA--ATCC-----TGTGGTTTTAAGTCATT-TA-CA-TTCATGATCATGA-TCATAT--ATTT-TTA---TAAGGCATCATTTTGAA--A-TTAACT----TTTACA-AAGTTTCACTGTTTTAATGCTGTTTTGAAATTTAGGCAAAAATAGGGATCACATGGAACCCT-TGTTCTACCTTG
gi|10 : CATATTCCAT-GTTCA-GGGAATGTAACAA--------------TCCGAATTTCCTT-A-TACATGTAGGTAAAAATCGA-----C----CAGCGAGAGGAATATATG-----CCTTCAGACAACACAGAGC--ACACA--CTCGCCT-ACCTATCAAACTTACATA------------------------------TTTGGAATA----A--GAATGGTAT----ATAG-----GC-AAAT-------------------G--CATGT--TC---------CAttcat
gi|11 : GCTAAAGG-AG--AAAGTGTG-GATAAGGGCCTT----TTGTGGTCTCCA-T-TTT---A--AAAAGTCAGCATAATTGAAACTGTAGGTCATTATTTGGTCA----ACCATATCATGTCTATATGGAAATTAGTACC-ATTTTACCAT-----GACATAtgttttctaaa
gi|12 : ttT--ATG--A-CA--TTTT-----TGTGGCTGA-AGCCCCT-TA-CA-TTTAT---TGTAA-TTATAT--ATTT-CTATATTAAAGCATTACCTTGAT--T-TTAA------CT-----AAGTTTCACAGTTTTAAGTCTATCATAAAATTc
gi|13 : tatatttttccgaaatcTGTATGT-A-ACATTTT----ATGAAGT-ATGC---A---AT---TTTCTTCTGAAACCCAAAATTAAATTAAAT--ATG----CATCATCTCAAAATAAGGTTTT--TTTATA-TA-CATTTCATGA
gi|13 : GCATCATCTCAAA--A-T-AAGGTTTTTTTATATACATTTCATGACTTTA-GTCTATTTTGAAATTTAATTGAActttagtctattttgaaatttaattgaa
gi|14 : tgtatgtaacattttatgaagtatgcaattttcttctgaaacccaaaattaaattaaatat-GTTCACA---AGGTCTTCAAGTT-AGTGGAAATTTT-AATTTCCTCTT-T---TTTGGCCAAAAATT-A-----A----C-----GAAACGTACGCT-----ACTTC
gi|15 : aaaactttatatCAACGTT-AATGAATATTCCGAATTTCCTC-A-T---CTTGGttg
gi|16 : aagttAAGG-AA--AAGGTA-G-GATAAGGATAAT----GTATGG-ACTTG-TATTTGAGA--AGAAGTCGTCATAGGTAAAACTGTACATCATatagaagaatcggcatatcagaagcatgtactgtattttgctttagaaagt
gi|17 : ttgtaa-GTTCACAGGAAGGTCACAAAGTT-AATGAAAGTTCCGAATTTTCTT-A------ATGACAAACTATTGA-----
gi|18 : -AAGTTTCACGGTTTTGAATCCATTTTGAAATCTAAGATAAACTGGAGGTCACATGGTCCCGTATATCCTAgaaattcttaagtacatgt
gi|2 : ctTGAAAGCAG--AAGGTA-G-GATAAGGGACAT----ATAT--TACCCGAT-TTT---C--AGAATTCATCATGAACAAAATTGTAAACCATTATTTAGTAATGA-G----ATAATATTTATCCA--------------TTTTAGTATATCTA---ATATTCAAAAGCTCACAGGAAAATGACAAAGTA-AATGGAAA--------TTCCGA-A-T---TT----AAAACAT--------------------------ATG-------------GG---TATAGA------ACA--TTTGGCA-ACCTCTCACACTTGTATATCTTTTACGG-CTGTA---TT-TCTTCAAGTTTGGAATG----A--AAATGGTAC----ATGT-----GC-AAAT-------------------G--C--GTGCTC---------TAAAGCAGA---TAT-------ATTT-------------------------T---TTTTTTCTGAAATCATAATTTTGTTCAAGTTCACG--A-AA--ATCG-----TGTGACGTT-AGACAGT-TA-CATTTTATGGTCGTGG-TCATATAAATTCACTA---T--GACACCAT--------A-CTAT------GTTA----------ACGGTTTTAGAT-TATTTTGAAATTTAAGTGAAAATGGGtgt
gi|3 : tttTGAAGA-ATTTAAGGTA-ATGATTAAGGCCAT----GTAAAGCTCCCA-T-TTT---ATAAGGTGTCAATATGGACACAA-TATAGATCGTC-TTTA-----------------TGTCTATCTCAGCAGAAATAT-----------------GACAT---CCAA-GGTCA------------AAAGTC-AATGAA--TTCGAAAATTCCTT-A-T---TTGGGTAAAACATTTACAAATA----T-----GAAGCAAAAGTT-----GCTTAAGAAAATATAGA-AC-TCGCA--CTTGCCT-ATATTTCAAACTTAAATATTTTGTGCAA-CTGTA---TCAACTGCAACTTTGGTATA----A--AAAT-------------------C-T-AT-------------------G--C--------------------------ACGTA----A-A-ATTTC------AAAAC-ATGCC------AT---TTTCTTCTGAAACC---------CTTATAT--GTG--ATCA--A-CT-----TGTGGCTTT-----ATA-TA-CAGTTC-TTAT--TAATTTAAACG-ATTT-------TAAGT--TTATTTTGAA--ATTTAA------TCGA-A-Aacc
gi|3 : TCTT-----A-TTAA------TTTA-A-A-------CGATTTTAAGTTTATTTTGAAATTTAATCGAAAATGGGAATCACCTGGGACCCT-TAatgggaatcacctgggacccttacgtgatttttcgtcctttgttcaat
gi|4 : tgaagaatttaaggtaatgattaaggccatgtaaagctcccattttataaggtgtcaatatggacacaatatagatcgtctttatgtctatctcagcagaaatatgacatccaaggtcaaaagtcaatgaattcgaaaattccttatttgggtaaaacatttacaaatatgaagcaaaagttgcttaagaaaatatagaactcgcacttgcctatatttcaaacttaaatattttgtgcaactgtatcaactgcaactttggtataaaaatctatgcacgtaaaatttcaaaacatgccattttcttctgaaacccttatatgtgatcaacttgtggctttatatacagtTAA----G----ATCATATATAACTCAAAATATGTGTCAGTTTTCACTTT---TAACATATTCTAA-GTTCACAGGAAGATTACAAAGTT-AATGAAAATCCCGAATTTTCTC-ATT---TTTGTCAAAAGAGTGAC----AAATTT-----GAAGCATATATT-----ACTTCAGAAAATATTGCGTG--CACA--CTTG--------CTCAA--------------------CTAT----CCAGTTGCAACTTTGGTATA----A--AAAT--TGC----AT-------GCTTCAT-------------------G--T--TT--TC---------CATAGCGCACTGTATG----------C----A-AAAAT--TGCCA----------TTTCCTCT------ATACATCTGCGC------ATG----C----TCT-----------TTT-AGACATTATAGCT-TTCACGATTGCGA-TTATGT--ATTT-GTA---CAAAGTATCATCTTGCA--A-cgtgatttttcgtcctttgttcaat
gi|5 : AGAGCATACA--CTTGCCT-ACTTATCTAACTTACATATTTAGTACACACTTGACACTTGGCTGCAACTTTGGTACATTGTATTAAATAG-------GTAG-----GC-AAATATATACATATCATCCATTTG--C--TT--TC---------CAAAGTAAAATATATGA-A-T-GTTTC----T-AGAATCAAGCCA------T---TTTCTTCTGAAACCTGAAAATTGCTCAAAT--ATGTTA-CT--ATCT-----TGT-GTTTT-A-TTACT-TG-CA-TTCATAATTATAA-TGATAT--ATCA-TTAT--TCAGTCAACACCTTGAAATA-TTAG------TCT--A-AGGTTTCATGATTT
gi|6 : ttatagaatgttgtAAATATAAAT-T-ATACA---TTGCCT-ACATC-CATCTTTGCATATTTTCTACAC-CAGAA---TCAGCTGCAACTTTGGTGTA----A--AAATGATAC----AAAG-----GC-AAAC-------------------GTAT--GC--TCGATATTTAACAAAGCAAAATGTAAGT-AGA-ATTTA----A-AAGGT-TTGCC------AT---TTTCGGCGTAAATCATAAATTT-------T--AT-----TG--ATTT-----TGTGACCTT-GGTTA---TA-CA-TT-----TC------TAT-----TTT-CTA---T-CGGCATCATCT-------------------------AGGCTGTACGATTCTAAATCCGTTTTGAAATATAAGTGAAAATGGGAGCAACAT-AGACCCT-TATCCTATCaa
gi|7 : aGAAGG-AG--AAGATG-G-GATAAAGGCTTTTTAAATATTGTCCCTG-G-TTT---T--ATAAGTCAATATGGACAAAAATGTAGATTATTATTGAGTAAAATTG----ATCATATCTATCTGAAAATGAGTATTGGTTTTAACTTA---AGAGA-----------TCAT----------CAAAATT-----------CCGAATTTCCTC---T---TTTGTGGATACAGTGAGATAGA----A-----GTAGCGGGTGTT-----GCTTCAGGAACGATAGAG----CACAAGCTTGAGTAATCCCTCAAACTCATATATTTTATGCAT-CGTTA---TCAGCTGAAACTTTGTGATA----A--CAATGGTAC----Ag
gi|8 : ATACGGAG-AAACA--TTTGCCT-TCCTATTAAACTTA-GTGTTTTATACAC-C---------AGCTGCAAATTTGGTAT-----A--AAATAGTACATCAATAGTTTTTGG-TTAT-------------------T--T--TT--TA---------AAAAACAAAATATGTGT-A-A-CTTTT----A-AAAAA-A----A-A---ATAAAGTTATTCAGAAACAATAATATTGC---------TA--A-C---ACCT----------------GGCA-T-TA-CA-CCCATAGTCGTGA-TTACGT--ATTT-CTG---CAA---AT-------AC--A-TT--------CCTACA-AGGTTTTACTGTTTTAAG-------TG----------GATAACGGGGGCTACA-GGGACCCT-TATCCTACCTTG
gi|9 : ----ATTATGTGCATCTAATAATCAATCTCGGTTT-AATACT---TGACAT-TTCTAA-GTTCACACGATGATGACAAATTTTAATGAAATGTTCGAACTTCCCC-A-T---TTTTGCCAGTTATTGA-----AATT-T-----GAAAAATACATTCATTTGCTTCACAAAATATAGA----ACACAGTCTTTCTT-ACCTTTCAAAGTTACGTATCTTGTACAC-CTGTA---TCAATT-CAATTcccttt
blockSeqs : C TT T T TTAAA G TC TA GAGA G C G ACCAT GGA T CA T A ATCTA A C A CAG TG A T AAT ATACA GT A GACCAGCGA AT T CATTTG GAGCA AG A C C T CA TTGACAC T TTGT TT G T ATCAATAGTTTTT TTC ATATACATATCATCCATTTGCTTTC A TAAC TATGAAGTATGCAAT CA AT AATTAAATATGCATCATCTCAAAATAAGGTTTTTTTATA G T G TG T AA AC TATTA CAAAATAAGGTTTTTTTATAT A TC TT A
blockSeqs : . . . . T G TA AT ATA T C C AATTG CAG A TG T A TTA A A . CAG GG C . TAT TTT CC A TACAAATAT GT C C GAGA GT . T T G G TGTA G . . G T ATAG AA GTATGCTCGATATTTAA C TAGA CTAGAATCAAGCCAT AT TT GTTCAAGTTCACGAAAATCGTGTGACGTTAGACAGT . T G CG . G C TTC TGAAATTTAATCGAA C TC GA .
blockSeqs : . . . . G A CT T A T T A TGAG CAA A CG T T AAG A C . CAG GG C . AGT ATT CA T GACAAATTT AA T A GCA . . A T G A TGTA G . . A T ATGT AA GCATGTTC A AAT TAAAAAAAAAATAAA AT AT GCTCAAATATGTTACTATCTTGTGTTTTATTACT . G T TG . . G TA TGAAATATTAGTCTA A TC GT .
blockSeqs : . . . . A T TC T C A A G G GAA G C T T TTG A T . CAC AA G . AAT AT TA C GAGATAGAA AT A G ACT . . C T C C AGAA G . . G T GTAG AA GCGTGCTC A TAA AAAAGGTTTGCCAT TG AA CTTATATGTGATCAACTTGTGGCTTTATA . . G TA . . T CA TGATTTTAACT G TT TC .
blockSeqs : . . . . G . A G T A . G . AAT C . . A G . T . GG GA T . ATG AT CA C GAAATTT GG T A GTG . . C T A T GTTA G . . G T AAAG AA GTTTTC A AA CAAAACATGCCAT AT AT TATTGATTTTGTGACCTTGGTTA . . A CG . . C CA TATTAATTTAA G TC GT
blockSeqs : A . . . . G . . . CA GA G . AA AT GG G AAC AT T G TTA . . T T A C TGTA G . . A T AT TT TTTTTA . . CAAAAATTGCCA AT TA GCGCATGCTCTTTTAGACATTA . . A C . . C T ACATTCCTACA G T .
blockSeqs : . . T . . . T AT CC C . . C . G . . C C G C TAT G . . . . . T GC . T . . GCTAACACCTGGCAT . . . . . . . T ACTATGTTA . .
blockSeqs : . . . . . . A A T A . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . .
blockSeqCons : T** AT***** GACAAACGN********* G***** GCA** AA**** CAAAANATGCCAT**************** GCTCAAATATGTCGCCATCTTGTGACTTTATTA*************** TAAATATTANTCTA***********
originalCons : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTC-A-T---TTTGGCNAAACATTGA-----A----C-----GAAGCGTACGTT-----GCTTCAGGAAATATAGAGAG-ACACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------G--C--GT--TC---------CAAAGCAAAATGTATGT-A-A-ATTTC----A-AAAAT-ATGCCA-A---AT---TTTCTTCTGAAACCATAAATTTGCTCAAAT--ATG--A-CA--ATCT-----TGTGGCTTT-AGNCATT-TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTGAA--A-TTAA------TTTA-A-AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
finalCons : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCGT--TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTAA----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTCCAA-GTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTCAT-----TTTGGCNAAACATTGACAAACGN---------GAAGCGTACGTTG-----CTTCAGGAAATATAGAGCA--CACA--CTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------G--C--GT--TC---------CAAAGCAAAATGTATGAA----ATTTCAAAANATGCCAT----------------TTTCTTCTGAAACCATAAATTTGCTCAAATATGTCGCCATCTTGTGACTTTATTA---------------TA-CA-TTCATGATCGTGA-TTATAT--ATTT-CTA---TAAGGCATCATCTTAAATATTANTCTA-----------AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
Alignments
lowQualScore : 11111 111 222222 4444444444444 11 222222 11111 1111111 1111111 111111 1111111 1111111111111 66666666666666666666666666666666666666 5555555555555555555555555555555555555555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111
lowQualScore : 6 99 6 6 44444 7 22 222 111111 1 5 5 0 2222222222222 111 3 11 1 1 555555 6 77 777 11 4 4 55 33333 4 7777 4 0 8888888 66 2222222 555555 1 6666 0 4 0 3 1 3 55 3333333 1 9999 66 4 1 5555555555555 999 55555555555555555555555555555555555555 1 1111111111111111111111111111111111111111 0 0 66 11 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 0 0000 0 555555 0 8
lowQualScore : . .. . . ..... . .. ... ...... . . . . ............. ... . .. . . ...... . .. ... .. . . .. ..... . .... . . ....... .. ....... ...... . .... . . . . . . .. ....... . .... .. . . ............. ... ...................................... . ........................................ . . .. .. . .................................................................................................................................. . . .... . ...... . .
lowQualScore : 7 22 7 7 55555 5 77 777 888888 0 2 2 8 0000000000000 444 0 99 4 9 999999 2 44 666 00 1 0 66 11111 4 2222 7 1 6666666 99 8888888 999999 4 9999 7 0 7 2 4 2 66 4444444 6 4444 11 7 8 9999999999999 444 44444444444444444444444444444444444444 4 6666666666666666666666666666666666666666 1 2 66 00 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 1 6666 1 777777 8 0
consensus : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTA---A----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTC-CAAGTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTCA-T---TTT-GG--CNAAANATTGACAAATNNGAAGC--GTAC-G----TT-----GCTTCAGAAAATATAGAGC--ACACACTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------GC--GT--TC---------CAAAGCAAAATGTA--TG--AA-ATTTC-----A--AAAN-AT--GCC------ATTTTCTTCTGAAACCATAAATTTGCTCAAATATGTCGC---CATCT-----TGT-GGCTTT-A-----TTA--TA-CA---TTCATGATCGTGATTATAT--ATTT-CTA---TAAGGCATCAT-CTT-AAA-TA---TTANTCT----A---AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
Reference ( family-651 ) : GCTGAAGG-AG--AAGGTA-G-GATAAGGGCCAT----ATATNGTNCCCG-T-TTT---N--AGAAGTCANCATGGACAAAACTGTAGATCATTATTTAGTA---A----G----ATCATGTCTATCTNAAAATNAGTATCGGTTTTAACATA---AGACATATTC-CAAGTTCACAGGAAGGTNACAAAGTT-AATGAAAATTCCGAATTTCCTCA-T---TTT-GG--CNAAACATTGACAAACGNGAAGC--GTAC-G----TT-----GCTTCAGGAAATATAGAGC--ACACACTTGCCT-ACCTCTCAAACTTACATATTTTGTACAC-CTGTA---TCAGCTGCAACTTTGGTATA----A--AAATGGTAC----ATAG-----GC-NAAT-------------------GC--GT--TC---------CAAAGCAAAATGTA--TG--AA-ATTTC-----A--AAAN-AT--GCC------ATTTTCTTCTGAAACCATAAATTTGCTCAAATATGTCGC---CATCT-----TGT-GACTTT-A-----TTA--TA-CA---TTCATGATCGTGATTATAT--ATTT-CTA---TAAGGCATCAT-CTT-AAA-TA---TTANTCT----A---AGGTTTCACGGTTTTAAGTCTATTTTGAAATTTAAGCGAAAATGGGGGTCACATGGGACCCT-TATCCTACCTTG
gi|1 : GTTGAAGG-AG--AAGGTA-G-GATAAAAGCCAT----ATATTGTTTCCA-A-TT----G--AGGAGTCATCATGGACAAAACTCCA---CATCATTTAGTA---A----GCCACATCATGTCTAAATCAAAACAAGTATCAGTTTTAACATA---AAACATATTC-CAAGTTCACAGGAAGGTCATAAAGAT-AATGAAAATTTTGACTTTCCTCAAT---TTT-GG--CCAAACATT----AATGC--AGC--ATAT-G----TT------CTTCATGAAATACAGAGAGAACACACTTGCCT-ACCTCATAAACTGACATATATTGTACAC-CTGTA---TCAGCTACAACTTTGGTATA----A--ATATGGGAC----ATAG-----GC-TAAT-------------------GA--AT--TC---------CAAAGCAAAATGTA--TGTAAA-ATTTCAACAAA--AAAT-AT--GCCATATATATTTTCTTCTGAAACCCTACATTTACTCAAATAAATGAC---AATCC-----TGT-GGTTTT-AAG---TCATTTA-CA---TTCATGATCATGATCATAT--ATTT-TTA---TAAGGCATCAT-TTT-GAA--A---TTAACTTTTACA---AAGTTTCACTGTTTTAATGCTGTTTTGAAATTTAGGCAAAAATAGGGATCACATGGAACCCT-TGTTCTACCTTG
gi|10 : CATATTC-CATGTTCA-GGGAATGTAACAA--------------TCCGAATTTCCTTA-TACATGT-AG--GTAAAAATCGACCAGCGAGAGGA--ATAT-A----TG-----CCTTCAGACAACACAGAGC--ACACACTCGCCT-ACCTATCAAACTTACATA------------------------------TTTGGAATA----A--GAATGGTAT----ATAG-----GC-AAAT-------------------GCATGT--TC---------CAttcat
gi|11 : GCTAAAGG-AG--AAAGTGTG-GATAAGGGCCTT----TTGTGGTCTCCA-T-TTT---A--AAAAGTCAGCATAATTGAAACTGTAGGTCATTATTTGGTC---A----ACCATATCATGTCTATATGGAAATTAGTACC-ATTTTACCAT-----GACATAtgttttctaaa
gi|12 : tt--TA-CA---TTTAT---TGTAATTATAT--ATTT-CTATATTAAAGCATTAC-CTT--GA-TT---TTAA-CT----A---A-GTTTCACAGTTTTAAGTCTATCATAAAATTc
gi|13 : tatatttttccgaaatctatgacatttttgtggctgaagcccctTGTA--TGT-AACATTTT-----ATGAAGT-AT--GCA------ATTTTCTTCTGAAACCCAAAATTAAATTAAATATG-CAT---CATCTCAAAATAA-GGTTTT-T-----TTA--TA-TACATTTCATGA
gi|13 : GCATCAT-CTC-AAAATAAGGTTTTTTT----ATATACATTTCATGACTTTA-GTCTATTTTGAAATTTAATTGAActttagtctattttgaaatttaattgaa
gi|14 : tgtatgtaacattttatgaagtatgcaattttcttctgaaacccaaaattaaattaaatatGTTCACA---AGGTCTTCAAGTT-AGTGGAAATTTT-AATTTCCTCT-T---TTTTGG--CCAAAAATTAAC------GAAAC--GTAC-G----CT-----ACTTC
gi|15 : aaaactttatatCAACGTT-AATGAATATTCCGAATTTCCTCA-T---CTT-GGATAGAAGAATCGGCATATCAGAAGCATGTACTGTATTTT-----GCTTTAGAAAGTttg
gi|16 : aagttAAGG-AA--AAGGTA-G-GATAAGGATAAT----GTATGG-ACTTG-TATTTGAGA--AGAAGTCGTCATAGGTAAAACTGTACATCAT
gi|17 : ttgtaaGTTCACAGGAAGGTCACAAAGTT-AATGAAAGTTCCGAATTTTCTTA------AT-GA--CAAACTATTGAGAAA
gi|18 : CT----A---AG-TTTCACGGTTTTGAATCCATTTTGAAATCTAAGATAAACTGGAGGTCACATGGTCCCGTATATCCTAttcttaagtacatgt
gi|2 : TGAAAGCAG--AAGGTA-G-GATAAGGGACAT----ATAT--TACCCGAT-TTT---C--AGAATTCATCATGAACAAAATTGTAAACCATTATTTAGTAATGA----G----ATAATATTTATCCA--------------TTTTAGTATATCTA---ATATTCAAAAGCTCACAGGAAAATGACAAAGTA-AATGGAAATTCCGAATTTtgt
gi|2 : tttTATAGA------ACATTTGGCA-ACCTCTCACACTTGTATATCTTTTACGG-CTGTA---TT-TCTTCAAGTTTGGAATG----A--AAATGGTAC----ATGT-----GC-AAAT-------------------GC--GTGCTC---------TAAAGCAGA---TA--T------ATTT----------------------------TTTTTTTCTGAAATCATAATTTTGTTCAAGT---TCACGAAAATCG-----TGT-GACGTT-AGACAGTTA--CA-T----TTTATGGTCGTGGTCATATAAATTCACTA---T--GACACCATACT----A-TG---TTA-------------------ACGGTTTTAGAT-TATTTTGAAATTTAAGTGAAAATGGGaaaacatatgggtatagaacatttggcaacctctcacacttgtatatcttttacggctgtatttcttcaagtttggaatgaaaatggtacatgtgcaaatgcgtgctctaaagcagatatattttttttttctgaaatcataattttgttcaagttcacgaaaatcgtgtgacgttagacagttacattttatggtcgtggtcatataaattcactatgacaccatactatgttaacggttttagattattttgaaatttaagtgaaaatgggacc
gi|3 : ttttgaaagcagaaggtaggataagggacatatattacccgattttcagaattcatcatgaacaaaattgtaaaccattatttagtaatgagataatatttatccattttagtatatctaatattcaaaagctcacaggaaaatgacaaagtaaatggaaattccgaatttaaaacatatgggTGAAGA-ATTTAAGGTA-ATGATTAAGGCCAT----GTAAAGCTCCCA-T-TTT---ATAAGGTGTCAATATGGACACAA-TATAGATCGTC-TTTA--------------------TGTCTATCTCAGCAGAAATAT-----------------GACAT---C-CAAGGTCA------------AAAGTC-AATGAA--TTCGAAAATTCCTTA-T---TTG-GG--TAAAACATTTACAAATATGAAGC--AAAA-G----TT-----GCTTAAGAAAATATAGAAC--TCGCACTTGCCT-ATATTTCAAACTTAAATATTTTGTGCAA-CTGTA---TCAACTGCAACTTTGGTATA----A--AAAT-------------------C-T-AT-------------------GC--------------------------ACGTA------AA-ATTTC-----A--AAAC-AT--GCC------ATTTTCTTCTGAAACC---------CTT--ATATGTGAT---CAACT-----TGT-GGCTTT-A------TA--TA-CAG--TTC----------TTAT---------------TAA---------TTT-AAA-CG-----ATTTT----A---A-GTTT----ATTTTGAA---ATTT---AAT-----CGAAAATGGGAATCACCTGGGACCCT-TAacc
gi|4 : TA---A----G----ATCATATATAACTCAAAATATGTGTCAGTTTTCACTTT---TAACATATTC-TAAGTTCACAGGAAGATTACAAAGTT-AATGAAAATCCCGAATTTTCTCATT---TTT-GT--CAAAAGAGTGACAAATTTGAAGC--ATAT-A----TT-----ACTTCAGAAAATATTGCGT--GCACACTTG--------CTCAA--------------------CTAT----CCAGTTGCAACTTTGGTATA----A--AAAT--TGC----AT-------GCTTCAT-------------------GT--TT--TC---------CATAGCGCACTGTA--TG---------C-----A--AAAA-TT--GCC------ATTTCCT-------CTATACATCTGCGCA-------TGC-----TCT-----TTTAGAC----A-----TTA--TAGCT---TTCACGATTGCGATTATGT--ATTT-GTA---CAAAGTATCAT-CTT-cgtgatttttcgtcctttgttcaat
gi|5 : TGTAGAGC--ATACACTTGCCT-ACTTATCTAACTTACATATTTAGTACACACTTGACACTTGGCTGCAACTTTGGTACATTGTATTAAATAG-------GTAG-----GC-AAATATATACATATCATCCATTTGC--TT--TC---------CAAAGTAAAATATA--TG--AATGTTTCT----A--GAATCAA--GCC------ATTTTCTTCTGAAACCTGAAAATTGCTCAAATATGTTAC---TATCT-----TGT-G-TTTT-A-----TTACTTG-CA---TTCATAATTATAATGATAT--ATCA-TTAT--TCAGTCAACAC-CTTGAAA-TA---TTAGTCT----A---AGGTTTCATGATTTgcaa
gi|6 : ttatagaatgtAAATATAAATT--ATACA-TTGCCT-ACATC-CATCTTTGCATATTTTCTACAC-CAGAA---TCAGCTGCAACTTTGGTGTA----A--AAATGATAC----AAAG-----GC-AAAC-------------------GTATGC--TCGATATTTAACAAAGCAAAATGTAAGTA--GA-ATTT------A--AAAG-GTTTGCC------ATTTTCGGCGTAAATCATAAATTT---------TATTG-----ATTT-----TGT-GACCTTGG-----TTA--TA-CA---TT-----TC-----TAT-----TTT-CTA---T-CGGCATCAT-CT--------------------------AGGCTGTACGATTCTAAATCCGTTTTGAAATATAAGTGAAAATGGGAGCAACAT-AGACCCT-TATCCTATCaa
gi|7 : aGAAGG-AG--AAGATG-G-GATAAAGGCTTTTTAAATATTGTCCCTG-G-TTT---T--ATAAGTCAATATGGACAAAAATGTAGATTATTATTGAGTA---AAATTG----ATCATATCTATCTGAAAATGAGTATTGGTTTTAACTTA---AGAGA-----------TCAT----------CAAAATT-----------CCGAATTTCCTC--T---TTT-GT--GGATACAGTGAGATAGAAGTAGC--GGGT-G----TT-----GCTTCAGGAACGATAGAGC--ACAAGCTTGAGTAATCCCTCAAACTCATATATTTTATGCAT-CGTTA---TCAGCTGAAACTTTGTGATA----A--CAATGGTAC----Ag
gi|8 : ATACGGAGA--A-ACATTTGCCT-TCCTATTAAACTTA-GTGTTTTATACAC-C---------AGCTGCAAATTTGGTAT-----A--AAATAGTACATCAATAGTTTTTGG-TTAT-------------------TT--TT--TA---------AAAAACAAAATATG--TG--TA-ACTTTTAAAAA--AAAA-AT--A--------AAGTTATTCAGAAACAATAATATTGCT-AA------CAC---C-----------T-GGC----A-----T----TA-CA---CCCATAGTCGTGATTACGT--ATTT-CTG---CAA---AT----------A-CA---TTCCTAC----A---AGGTTTTACTGTTTTAAG-------TG----------GATAACGGGGGCTACA-GGGACCCT-TATCCTACCTTG
gi|9 : ----ATTATGTGCATCTAATAATCAATCTCGGTTT-AATACT---TGACAT-TTC-TAAGTTCACACGATGATGACAAATTTTAATGAAATGTTCGAACTTCCCCA-T---TTT-TG--CCAGTTATTGA--AATTTGAAAA--ATAC-A----TTCATTTGCTTCACAAAATATAGAAC--ACAGTCTTTCTT-ACCTTTCAAAGTTACGTATCTTGTACAC-CTGTA---TCAATT-CAATTcccttt