lowQualScore : 1 2 22 1 666666666666666 22222222 1111111 1111 1 11111 444444 222222222222222 1
lowQualScore : 6 8 8 7 6 8 6 8 7 7 5 00 0 222222222222222 1 99999999 9999999 2 4444 2 66666 6 333333 1 6 2 555555555555555 3 4
lowQualScore : . . . . . . . . . . . .. . ............... . ........ ....... . .... . ..... . ...... . . . ............... . .
lowQualScore : 7 3 3 3 7 0 0 0 8 3 2 88 0 222222222222222 0 00000000 0000000 8 2222 3 77777 7 777777 0 7 5 777777777777777 3 0
consensus : ATGCAGAAA-AATTTGATGCCCTTTGG-AACA-G-AT-GGAACCAAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTNGTCTCTC-TTT--------T------TTTCTCTCTCT--------CTCTA----A--AAAAAA----TCAAACATTTCTGGAATTCTAT-----ATATT-ATT-T---GAGATGTACTTT-TAAAATGT-------GT---TG-AAAAATAAA-AAAAAANAATTAAA
Reference ( gi|3 ) : ATGCAGAAA-ATTTTGTTGCCCTTTTG-AACA-G-AT-GAAACCAAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTC-TTT--------T------TTTTTCTCTCT--------CTCTA----A--AAAGAA----TTAAACATTTCTGGTATTCTAT-----ATATT-ATT-----GAGATGTACTTT-TAAAATAT-------GT---TG-AAAAATAAA-AAAAAATAATTAAA
gi|1 : ATGCAGAAA-ATTTTGTTGCCCTTTTG-AACA-G-AT-GAAACCAAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTTT--------T------TTTTTCTCTCT--------CTCTA----A--AAAGAA----TTAAACATTTCTGGTATTCTAT-----ATATTGATT------AGATGTACTTT-TAAAATAT-------GT---TGAAAAAATAAA-AAAAAAAAATTAAA
gi|5 : tgATGCAGAAAGAATTTAATGCCCTTTTGGAACAAG-AT-GGAACCAAAT---------CTTTTCATAGNNNNNNNNNNNNNNNNNN-NNN--------N------NNNNNNNNNNN--------NNNCA----A--AAAAAAAAAATCAAACATTTCTGGACTTATAT-----ATATT-TTTTTTGCGA-ATGTAT-----------T-------GT---TG-ACAAATAAA-AAAAAAaatattga
gi|10 : ATGCAGAAA-AATGTGTTGCCCTTGGG-AACaa
gi|17 : gttttgcaaatatttttttttaaatcattctatgaaacacgaattcattttgtgaaaaaatggcgGCATAAA-AATTCAATGCCCTTTGG-AACA-GCATAGAGACCAAAT-CTT
gi|18 : GAAA-AATTTGATGCCCTTCAG-AACA-G-AA-GGAACCAAAT-CTTttca
gi|19 : attAAA-ATTGTAATGCCCTTTGG-AACA-GAAT-GGAACCAAATttaat
gi|8 : aTGAAATCTTTTCA--GTT---TCTCTA---TCCC-TTT--------C------TTTCTTTCTCT--------CTCTT----A--TATAAA----ATAAACACTTCTGGAATTCTTT-----ATATT-ATTATA--AAGATATACTTTGTAATGCATACAGAAGGTTTCTT-AAAAATAAATAAAAAATcgtttta
gi|9 : CTCTCTCTCTC-TCTCTC-TCTGAAAAAAATGAAACATTTCTCTCTCTATCTGACACTCTATGTGA--AAAAAA----TCAAACATTTTCGGGACTCTATAGCCAATATT-ATA-----GAGATGTACTTT-TAAAATGT-------cagggtattg
gi|15 : tCT--------CTCTG----AGAAAAAAA----TCAAACATTTCTGGAACACTAT-----ACATT-TTA-----AAGATGTCCTTT-TAAAATGT-------AT---a
gi|14 : ----TTAGACATTTCTGGAATTCTAT-----ATATC-ATTATA--GAAATATACTTT-GAAAATGT-------AT---
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GGGTATACCAAAATACTTTCATCCTTTGGTTAAAGTATTATATTTACACACGCCTAGCGTGCACGATAAAACATAATTGGTCAGTGGGTTTTGCTAACTACTCCTTTTTAAAATTATTCTATTGAAAACACCAAATTCATTTTGTCAAAAATGGTGATGCAGAAAAATGTGTTGCCGTGGGAACA
Unaligned ( gi|4 ): ACAAAATACTCCTCACTCCTTTGTTAACAGTTAATTATATTTAACACAGCTAGGTGCAAATATACAAATTTCAATTGGGAGTGTGGGTTCTATAAACACAAATTCATTTTGGACAAAAATGGTGATGCAGAATAATGCTCGTTGCCCTGGGAACAAGATGGTGAAACCCAAAATTTTTCAA
Unaligned ( gi|6 ): GGGTATACAAAATACCCTCATTCTTTGGTTAATGTGCTATATTTAGAAAGGTAGGTGAAAAAAGAAAAAAAATAGTTTTACAATCTTTTTAAAGTTATACTATGAAACAGAAAAAAAATCATTATCGTAAAAAATGTAACACTGAACATTTTGATGCCCTTTGAAAC
Unaligned ( gi|7 ): GGTATACAAAATATCCCCATCCTTTGGTTTAAGTACTATATTTACTCAACAAGGCATATAGAGAAAACAAAAATAAATAAGCAGTTTACAATACCATTTCTAAGTTTTATGAAACACAAACAACTATTTCATCCAAAAATAGTGATACTGA
Unaligned ( gi|11 ): TTGTAAAATCATTTTTTAAAGTTATTATACAAAACACAAAAAAATCATGTTGTACAAAAATGGCGATACTGAAAAATGTTATGCCCTCTGAA
Unaligned ( gi|12 ): AAATCAAACATTTCCGGACTCTATGCCCTATATATATAGAGATGTACTATTAAAATGTTATACAGAAAGTTTGTGAAAAAAAAAATT
Unaligned ( gi|13 ): TTAAAAGTACTATATTTACACAGCTAGGTGTACAGAGAAAAAATTGAGTGTGGATTTGCAATACAAAAATGGC
Unaligned ( gi|16 ): TGTACAAAATACCGTCATCCTTTGGTTTAAGTGCATTATATACACATTTAAGTGTATAGAGAAAA
Unaligned ( gi|20 ): TTTCCGGAATTCTATATATTATTATAGAAAATATACTTTAAAA
Unaligned ( gi|21 ): AAAAATCAAACATATTCTCTCTCTCTGTCTATGTGA
Alignments
lowQualScore : 1 111 1 11 444444444444444 22222222 222222222222 11111 3333333333 111111111 11111 111
lowQualScore : 4 66 4 2 4 4 5 1 000 5 77 1 3 2 33 888888888888888 8 44444444 666666666666 6 2 9999 66 11111 4 9999999999 777 1 4 777777777 1 5 77777 444 8 8
lowQualScore : . .. . . . . . . ... . .. . . . .. ............... . ........ ............ . . .... .. ..... . .......... ... . . ......... . . ..... ... . .
lowQualScore : 4 11 4 6 4 4 7 4 000 7 99 4 2 2 22 000000000000000 0 22222222 333333333333 7 2 4444 11 11111 4 8888888888 888 9 4 888888888 7 7 00000 000 0 8
consensus : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCCGGA----AT--TCTAT-----ATAT-T-ATT-N----GAG---ATGTACTTT-TAA---------AATGTGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
Reference ( family-6447 ) : ATGCAGAAA-AAT--T-TGATGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTNGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCTGGA----AT--TCTAT-----ATAT-T-ATT-T----GAG---ATGTACTTT-TAA---------AATGTGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
gi|1 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTTTCTCTCT--------CTCT----A----A--AA-AGAATTAAACATTTCTGGT----AT--TCTAT-----ATAT-TGATT-------AG---ATGTACTTT-TAA---------AATATGT-T---GAAAAA---ATAAA-AAAAAAAAATTAAA
gi|10 : tgATGCAGAAA-AAT--G-TGTTGCCCTTG-GGAAC-aatattga
gi|12 : gttttgcaaatatttttttttaaatcattctatgaaacacgaattcattttgtgaaaaaatggcgAAATCAAACATTTCCGGACTCTATGCCCTAT-----ATATAT-A--------GAG---ATGTACTAT-TAA---------AATGTTA-TACAG-AAAGTTTGTGAA-AAAAAA-AATT
gi|14 : TTAGACATTTCTGGA----AT--TCTAT-----ATAT-C-ATTATA---GAA---ATATACTTT-GAA---------AATGTAT-
gi|15 : CT--------CTCT----G----AGAAA-AAAATCAAACATTTCTGGA----AC--ACTAT-----ACAT-T--TT-A----AAG---ATGTCCTTT-TAA---------AATGTAT-acagaagatttgttga
gi|17 : GCATAAA-AAT--T-CAATGCCCTTT-GGAAC-A-GCATAG---AGACC--AAAT-CTT
gi|18 : GAAA-AAT--T-TGATGCCCTTC-AGAAC-A-G-AAGG---A-ACC--AAAT-CTTttca
gi|19 : attAAA-AAT--TGTAATGCCCTTT-GGAAC-A-GAATGG---A-ACC--AAAT-Cttaat
gi|20 : TTTCCGGA----AT--TCTAT-----ATAT-T-ATT-A----TAGAAAATATAC-TT-TAA---------AAgtttta
gi|3 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTT-CTCTCT--------CTCT----A----A--AA-AGAATTAAACATTTCTGGT----AT--TCTAT-----ATAT-T-A-T-T----GAG---ATGTACTTT-TAA---------AATATGT-T---G-AAAA---ATAAA-AAAAAATAATTAAA
gi|4 : ATGCAGAAT-AATGCT-CGTTGCCC-TG-GGAACAA-G-ATGGTGAA-ACCCAAAAT-TTT
gi|5 : acaaaatactcctcactcctttgttaacagttaattatatttaacacagctaggtgcaaatatacaaatttcaattgggagtgtgggttctataaacacaaattcattttggacaaaaatggtgATGCAGAAAGAAT--T-TAATGCCCTTTTGGAAC-AAG-ATGG---A-ACC-----------AAATCTTTTCATAGNNNNNNNNNNNNNNNNNNNNN--------N------NNNNN-NNNNNN--------NNNCAAAAA----A--AA-AAAATCAAACATTTCTGGA----CT--TATAT-----ATAT-T-TTT-TTTGCGA----ATGTAT--------------------TGT-T---G-ACAA---ATAAA-AAAAAAAtcaa
gi|6 : GAAC-ATT--T-TGATGCCCTTT-GAAAC-
gi|8 : gggtatacaaaataccctcattctttggttaatgtgctatatttagaaaggtaggtgaaaaaagaaaaaaaatagttttacaatctttttaaagttatactatgaaacagaaaaaaaatcattatcgtaaaaaatgtaacactTGAAATCTTTTCA--GTT---TCTCTA---TCCCTTT--------C------TTTCT-TTCTCT--------CTCT----T----A--TATAAAAT-AAACACTTCTGGA----AT--TCTTT-----ATAT-T-ATTATA---AAG---ATATACTTTGTAATGCATACAGAAGGTTTCT---T-AAAA---ATAAATAAAAAAT
gi|9 : CTCTCTCTCTC-TCTCTCTCTGAAAAAAATGAAACATTTCT-CTCTCTATCTGACACTCT----ATGTGA--AA-AAAATCAAACATTTTCGGG----AC--TCTATAGCCAATAT-T-A-T-A----GAG---ATGTACTTT-TAA---------AATGTcagggtattg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GGGTATACCAAAATACTTTCATCCTTTGGTTAAAGTATTATATTTACACACGCCTAGCGTGCACGATAAAACATAATTGGTCAGTGGGTTTTGCTAACTACTCCTTTTTAAAATTATTCTATTGAAAACACCAAATTCATTTTGTCAAAAATGGTGATGCAGAAAAATGTGTTGCCGTGGGAACA
Unaligned ( gi|7 ): GGTATACAAAATATCCCCATCCTTTGGTTTAAGTACTATATTTACTCAACAAGGCATATAGAGAAAACAAAAATAAATAAGCAGTTTACAATACCATTTCTAAGTTTTATGAAACACAAACAACTATTTCATCCAAAAATAGTGATACTGA
Unaligned ( gi|11 ): TTGTAAAATCATTTTTTAAAGTTATTATACAAAACACAAAAAAATCATGTTGTACAAAAATGGCGATACTGAAAAATGTTATGCCCTCTGAA
Unaligned ( gi|13 ): TTAAAAGTACTATATTTACACAGCTAGGTGTACAGAGAAAAAATTGAGTGTGGATTTGCAATACAAAAATGGC
Unaligned ( gi|16 ): TGTACAAAATACCGTCATCCTTTGGTTTAAGTGCATTATATACACATTTAAGTGTATAGAGAAAA
Unaligned ( gi|21 ): AAAAATCAAACATATTCTCTCTCTCTGTCTATGTGA
Alignments
lowQualScore : 1 111 1 11 444444444444444 2222222222222222222222222 111111111 22222222 111111111 11111 111
lowQualScore : 4 6666 1 55 4 5 1 000 5 77 1 3 2 22 888888888888888 8 7777777777777777777777777 2 0 3 111111111 4 33333333 777 4 777777777 888 1 5 77777 444 8 8
lowQualScore : . .... . .. . . . ... . .. . . . .. ............... . ......................... . . . ......... . ........ ... . ......... ... . . ..... ... . .
lowQualScore : 4 9999 0 11 4 0 4 000 7 99 4 2 2 66 000000000000000 0 0000000000000000000000000 2 7 9 666666666 4 88888888 888 4 888888888 888 7 7 00000 000 0 8
consensus : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTC-T----A----A--AAAAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
Reference ( family-6447 ) : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTC-T----A----A--AAAAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TNGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
gi|1 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTTTCTCTCT--------CTC-T----A----A--AAAGAATTAAACATTTCTGGTATTCTAT-----A---TAT-TGAT--T--AG---ATGTACTTT-TAA---------AATA---TGT-T---GAAAAA---ATAAA-AAAAAAAAATTAAA
gi|10 : tgATGCAGAAA-AAT--G-TGTTGCCCTTG-GGAAC-aatattga
gi|12 : gttttgcaaatatttttttttaaatcattctatgaaacacgaattcattttgtgaaaaaatggcgAAATCAAACATTTCCGG-ACTCTAT-----GCCCTATAT-ATA-TAGAG---ATGTACTAT-TAA---------AATG---TTA-TACAG-AAAGTTTGTGAA-AAAAAA-AATT
gi|14 : TTAGACATTTCTGGAATTCTAT-----A---TAT-C-ATTATAGAA---ATATACTTT-GAA---------AATG---TAT-
gi|15 : CT--------CTC-T----G----AGAAAAAAATCAAACATTTCTGGAACACTAT-----A---CAT-T--T--TAAAG---ATGTCCTTT-TAA---------AATG---TAT-acagaagatttgttga
gi|17 : GCATAAA-AAT--T-CAATGCCCTTT-GGAAC-A-GCATAG---AGACC--AAAT-CTT
gi|18 : GAAA-AAT--T-TGATGCCCTTC-AGAAC-A-G-AAGG---A-ACC--AAAT-CTTttca
gi|19 : attAAA-AAT--TGTAATGCCCTTT-GGAAC-A-GAATGG---A-ACC--AAAT-Cttaat
gi|2 : ATGCAGAAA-AAT--G-TGTTG-CCGTG-GGAAC-A-gtttta
gi|20 : gggtataccaaaatactttcatcctttggttaaagtattatatttacacacgcctagcgtgcacgataaaacataattggtcagtgggttttgctaactactcctttttaaaattattctattgaaaacaccaaattcattttgtcaaaaatggtgTTTCCGGAATTCTAT-----A---TAT-T-AT--TATAGAAAATATAC-TT-TAA---------AA
gi|3 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTT-CTCTCT--------CTC-T----A----A--AAAGAATTAAACATTTCTGGTATTCTAT-----A---TAT-T-AT--T-GAG---ATGTACTTT-TAA---------AATA---TGT-T---G-AAAA---ATAAA-AAAAAATAATTAAA
gi|4 : ATGCAGAAT-AATGCT-CGTTGCCC-TG-GGAACAA-G-ATGGTGAA-ACCCAAAAT-TTT
gi|5 : acaaaatactcctcactcctttgttaacagttaattatatttaacacagctaggtgcaaatatacaaatttcaattgggagtgtgggttctataaacacaaattcattttggacaaaaatggtgATGCAGAAAGAAT--T-TAATGCCCTTTTGGAAC-AAG-ATGG---A-ACC-----------AAATCTTTTCATAGNNNNNNNNNNNNNNNNNNNNN--------N------NNNNN-NNNNNN--------NNN-CAAAAA----A--AAAAAATCAAACATTTCTGGACTTATAT-----A---TAT-T-TT--T-------------TTT-GCG---------AATGTATTGT-T---G-ACAA---ATAAA-AAAAAAAtcaa
gi|8 : TGAAATCTTTTCA--GTT---TCTCTA---TCCCTTT--------C------TTTCT-TTCTCT--------CTCTT----A----T--ATAAAAT-AAACACTTCTGGAATTCTTT-----A---TAT-T-ATTATAAAG---ATATACTTTGTAATGCATACAGAAGG---TTTCT---T-AAAA---ATAAATAAAAAAT
gi|9 : CTCTCTCTCTC-TCTCTCTCTGAAAAAAATGAAACATTTCT-CTCTCTATCTGACACTC-T----ATGTGA--AAAAAATCAAACATTTTCGGGACTCTATAGCCAA---TAT-T-A---TAGAG---ATGTACTTT-TAA---------AATG---Tcagggtattg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGTATACAAAATACCCTCATTCTTTGGTTAATGTGCTATATTTAGAAAGGTAGGTGAAAAAAGAAAAAAAATAGTTTTACAATCTTTTTAAAGTTATACTATGAAACAGAAAAAAAATCATTATCGTAAAAAATGTAACACTGAACATTTTGATGCCCTTTGAAAC
Unaligned ( gi|7 ): GGTATACAAAATATCCCCATCCTTTGGTTTAAGTACTATATTTACTCAACAAGGCATATAGAGAAAACAAAAATAAATAAGCAGTTTACAATACCATTTCTAAGTTTTATGAAACACAAACAACTATTTCATCCAAAAATAGTGATACTGA
Unaligned ( gi|11 ): TTGTAAAATCATTTTTTAAAGTTATTATACAAAACACAAAAAAATCATGTTGTACAAAAATGGCGATACTGAAAAATGTTATGCCCTCTGAA
Unaligned ( gi|13 ): TTAAAAGTACTATATTTACACAGCTAGGTGTACAGAGAAAAAATTGAGTGTGGATTTGCAATACAAAAATGGC
Unaligned ( gi|16 ): TGTACAAAATACCGTCATCCTTTGGTTTAAGTGCATTATATACACATTTAAGTGTATAGAGAAAA
Unaligned ( gi|21 ): AAAAATCAAACATATTCTCTCTCTCTGTCTATGTGA
Alignments
lowQualScore : 1 111 1 11 444444444444444 22222222 222222222222 111111111 11111111 111111111 11111 111
lowQualScore : 4 6666 1 55 4 5 1 000 5 77 1 3 2 22 888888888888888 8 44444444 666666666666 6 2 0 111111111 4 77777777 777 4 777777777 888 1 5 77777 444 8 8
lowQualScore : . .... . .. . . . ... . .. . . . .. ............... . ........ ............ . . . ......... . ........ ... . ......... ... . . ..... ... . .
lowQualScore : 4 9999 0 11 4 0 4 000 7 99 4 2 2 66 000000000000000 0 22222222 333333333333 7 2 7 666666666 4 11111111 888 4 888888888 888 7 7 00000 000 0 8
consensus : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
Reference ( family-6447 ) : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
gi|1 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTTTCTCTCT--------CTCT----A----A--AA-AGAATTAAACATTTCTGGTATTCTAT-----A---TAT-TGAT--T--AG---ATGTACTTT-TAA---------AATA---TGT-T---GAAAAA---ATAAA-AAAAAAAAATTAAA
gi|10 : tgATGCAGAAA-AAT--G-TGTTGCCCTTG-GGAAC-aatattga
gi|12 : gttttgcaaatatttttttttaaatcattctatgaaacacgaattcattttgtgaaaaaatggcgAAATCAAACATTTCCGGA-CTCTAT-----GCCCTATAT-ATA-TAGAG---ATGTACTAT-TAA---------AATG---TTA-TACAG-AAAGTTTGTGAA-AAAAAA-AATT
gi|14 : TTAGACATTTCTGGAATTCTAT-----A---TAT-C-ATTATAGAA---ATATACTTT-GAA---------AATG---TAT-
gi|15 : CT--------CTCT----G----AGAAA-AAAATCAAACATTTCTGGAACACTAT-----A---CAT-T--T--TAAAG---ATGTCCTTT-TAA---------AATG---TAT-acagaagatttgttga
gi|17 : GCATAAA-AAT--T-CAATGCCCTTT-GGAAC-A-GCATAG---AGACC--AAAT-CTT
gi|18 : GAAA-AAT--T-TGATGCCCTTC-AGAAC-A-G-AAGG---A-ACC--AAAT-CTTttca
gi|19 : attAAA-AAT--TGTAATGCCCTTT-GGAAC-A-GAATGG---A-ACC--AAAT-Cttaat
gi|2 : ATGCAGAAA-AAT--G-TGTTG-CCGTG-GGAAC-A-gtttta
gi|20 : gggtataccaaaatactttcatcctttggttaaagtattatatttacacacgcctagcgtgcacgataaaacataattggtcagtgggttttgctaactactcctttttaaaattattctattgaaaacaccaaattcattttgtcaaaaatggtgTTTCCGGAATTCTAT-----A---TAT-T-AT--TATAGAAAATATAC-TT-TAA---------AA
gi|3 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTT-CTCTCT--------CTCT----A----A--AA-AGAATTAAACATTTCTGGTATTCTAT-----A---TAT-T-AT--T-GAG---ATGTACTTT-TAA---------AATA---TGT-T---G-AAAA---ATAAA-AAAAAATAATTAAA
gi|4 : ATGCAGAAT-AATGCT-CGTTGCCC-TG-GGAACAA-G-ATGGTGAA-ACCCAAAAT-TTT
gi|5 : acaaaatactcctcactcctttgttaacagttaattatatttaacacagctaggtgcaaatatacaaatttcaattgggagtgtgggttctataaacacaaattcattttggacaaaaatggtgATGCAGAAAGAAT--T-TAATGCCCTTTTGGAAC-AAG-ATGG---A-ACC-----------AAATCTTTTCATAGNNNNNNNNNNNNNNNNNNNNN--------N------NNNNN-NNNNNN--------NNNCAAAAA----A--AA-AAAATCAAACATTTCTGGACTTATAT-----A---TAT-T-TT--T-------------TTT-GCG---------AATGTATTGT-T---G-ACAA---ATAAA-AAAAAAAtcaa
gi|8 : TGAAATCTTTTCA--GTT---TCTCTA---TCCCTTT--------C------TTTCT-TTCTCT--------CTCT----T----A--TATAAAAT-AAACACTTCTGGAATTCTTT-----A---TAT-T-ATTATAAAG---ATATACTTTGTAATGCATACAGAAGG---TTTCT---T-AAAA---ATAAATAAAAAAT
gi|9 : CTCTCTCTCTC-TCTCTCTCTGAAAAAAATGAAACATTTCT-CTCTCTATCTGACACTCT----ATGTGA--AA-AAAATCAAACATTTTCGGGACTCTATAGCCAA---TAT-T-A---TAGAG---ATGTACTTT-TAA---------AATG---Tcagggtattg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGTATACAAAATACCCTCATTCTTTGGTTAATGTGCTATATTTAGAAAGGTAGGTGAAAAAAGAAAAAAAATAGTTTTACAATCTTTTTAAAGTTATACTATGAAACAGAAAAAAAATCATTATCGTAAAAAATGTAACACTGAACATTTTGATGCCCTTTGAAAC
Unaligned ( gi|7 ): GGTATACAAAATATCCCCATCCTTTGGTTTAAGTACTATATTTACTCAACAAGGCATATAGAGAAAACAAAAATAAATAAGCAGTTTACAATACCATTTCTAAGTTTTATGAAACACAAACAACTATTTCATCCAAAAATAGTGATACTGA
Unaligned ( gi|11 ): TTGTAAAATCATTTTTTAAAGTTATTATACAAAACACAAAAAAATCATGTTGTACAAAAATGGCGATACTGAAAAATGTTATGCCCTCTGAA
Unaligned ( gi|13 ): TTAAAAGTACTATATTTACACAGCTAGGTGTACAGAGAAAAAATTGAGTGTGGATTTGCAATACAAAAATGGC
Unaligned ( gi|16 ): TGTACAAAATACCGTCATCCTTTGGTTTAAGTGCATTATATACACATTTAAGTGTATAGAGAAAA
Unaligned ( gi|21 ): AAAAATCAAACATATTCTCTCTCTCTGTCTATGTGA
Alignments
lowQualScore : 1 111 1 11 444444444444444 22222222 222222222222 111111111 11111111 111111111 11111 111
lowQualScore : 4 6666 1 55 4 5 1 000 5 77 1 3 2 22 888888888888888 8 44444444 666666666666 6 2 0 111111111 4 77777777 777 4 777777777 888 1 5 77777 444 8 8
lowQualScore : . .... . .. . . . ... . .. . . . .. ............... . ........ ............ . . . ......... . ........ ... . ......... ... . . ..... ... . .
lowQualScore : 4 9999 0 11 4 0 4 000 7 99 4 2 2 66 000000000000000 0 22222222 333333333333 7 2 7 666666666 4 11111111 888 4 888888888 888 7 7 00000 000 0 8
consensus : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
Reference ( family-6447 ) : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
gi|1 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTTTCTCTCT--------CTCT----A----A--AA-AGAATTAAACATTTCTGGTATTCTAT-----A---TAT-TGAT--T--AG---ATGTACTTT-TAA---------AATA---TGT-T---GAAAAA---ATAAA-AAAAAAAAATTAAA
gi|10 : tgATGCAGAAA-AAT--G-TGTTGCCCTTG-GGAAC-aatattga
gi|12 : gttttgcaaatatttttttttaaatcattctatgaaacacgaattcattttgtgaaaaaatggcgAAATCAAACATTTCCGGA-CTCTAT-----GCCCTATAT-ATA-TAGAG---ATGTACTAT-TAA---------AATG---TTA-TACAG-AAAGTTTGTGAA-AAAAAA-AATT
gi|14 : TTAGACATTTCTGGAATTCTAT-----A---TAT-C-ATTATAGAA---ATATACTTT-GAA---------AATG---TAT-
gi|15 : CT--------CTCT----G----AGAAA-AAAATCAAACATTTCTGGAACACTAT-----A---CAT-T--T--TAAAG---ATGTCCTTT-TAA---------AATG---TAT-acagaagatttgttga
gi|17 : GCATAAA-AAT--T-CAATGCCCTTT-GGAAC-A-GCATAG---AGACC--AAAT-CTT
gi|18 : GAAA-AAT--T-TGATGCCCTTC-AGAAC-A-G-AAGG---A-ACC--AAAT-CTTttca
gi|19 : attAAA-AAT--TGTAATGCCCTTT-GGAAC-A-GAATGG---A-ACC--AAAT-Cttaat
gi|2 : ATGCAGAAA-AAT--G-TGTTG-CCGTG-GGAAC-A-gtttta
gi|20 : gggtataccaaaatactttcatcctttggttaaagtattatatttacacacgcctagcgtgcacgataaaacataattggtcagtgggttttgctaactactcctttttaaaattattctattgaaaacaccaaattcattttgtcaaaaatggtgTTTCCGGAATTCTAT-----A---TAT-T-AT--TATAGAAAATATAC-TT-TAA---------AA
gi|3 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTTT-CTCTCT--------CTCT----A----A--AA-AGAATTAAACATTTCTGGTATTCTAT-----A---TAT-T-AT--T-GAG---ATGTACTTT-TAA---------AATA---TGT-T---G-AAAA---ATAAA-AAAAAATAATTAAA
gi|4 : ATGCAGAAT-AATGCT-CGTTGCCC-TG-GGAACAA-G-ATGGTGAA-ACCCAAAAT-TTT
gi|5 : acaaaatactcctcactcctttgttaacagttaattatatttaacacagctaggtgcaaatatacaaatttcaattgggagtgtgggttctataaacacaaattcattttggacaaaaatggtgATGCAGAAAGAAT--T-TAATGCCCTTTTGGAAC-AAG-ATGG---A-ACC-----------AAATCTTTTCATAGNNNNNNNNNNNNNNNNNNNNN--------N------NNNNN-NNNNNN--------NNNCAAAAA----A--AA-AAAATCAAACATTTCTGGACTTATAT-----A---TAT-T-TT--T-------------TTT-GCG---------AATGTATTGT-T---G-ACAA---ATAAA-AAAAAAAtcaa
gi|8 : TGAAATCTTTTCA--GTT---TCTCTA---TCCCTTT--------C------TTTCT-TTCTCT--------CTCT----T----A--TATAAAAT-AAACACTTCTGGAATTCTTT-----A---TAT-T-ATTATAAAG---ATATACTTTGTAATGCATACAGAAGG---TTTCT---T-AAAA---ATAAATAAAAAAT
gi|9 : CTCTCTCTCTC-TCTCTCTCTGAAAAAAATGAAACATTTCT-CTCTCTATCTGACACTCT----ATGTGA--AA-AAAATCAAACATTTTCGGGACTCTATAGCCAA---TAT-T-A---TAGAG---ATGTACTTT-TAA---------AATG---Tcagggtattg
blockSeqs : G GCT T TT A A C TGA G CA A T C GG GAAAAAAATGAAACA . ATCTGACA AAAAAA T C AGCCAA A ATTATAG AAA G TGCATACAG TAT T C ACAG TTT T T
blockSeqs : . TG A G . . A . . . . T N NN T . . ATGTGA . T GCCC . ATTATAA . . . . A . G . . A
blockSeqs : . G A T . . . . . . . . C A N . . GAGA . C A . ATATAG . . . . A . G . . T
blockSeqs : . T A C . . . . . . . . C C . . AA . T A . ATTAT . . . . G . T . . .
blockSeqs : . T T T . . . . . . . . TA . C A . TTAA . . . . G .
blockSeqs : . G T G . . . . . . . C A . ATTG . . . . T .
blockSeqs : . T T T . . . A . ATAG . . . .
blockSeqs : . T A G . A . TTT . . .
blockSeqCons : N* AAGGA******* G****
originalCons : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTGGTCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT----A----A--AA-AAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-T---G-AAAA---ATAAA-AAAAAANAATTAAA
finalCons : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCTN-TCTCTCTTT--------T------TTTCT-CTCTCT--------CTCTAAGGA-------AA-AAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATG---TGT-TG----AAAA---ATAAA-AAAAAANAATTAAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGTATACAAAATACCCTCATTCTTTGGTTAATGTGCTATATTTAGAAAGGTAGGTGAAAAAAGAAAAAAAATAGTTTTACAATCTTTTTAAAGTTATACTATGAAACAGAAAAAAAATCATTATCGTAAAAAATGTAACACTGAACATTTTGATGCCCTTTGAAAC
Unaligned ( gi|7 ): GGTATACAAAATATCCCCATCCTTTGGTTTAAGTACTATATTTACTCAACAAGGCATATAGAGAAAACAAAAATAAATAAGCAGTTTACAATACCATTTCTAAGTTTTATGAAACACAAACAACTATTTCATCCAAAAATAGTGATACTGA
Unaligned ( gi|11 ): TTGTAAAATCATTTTTTAAAGTTATTATACAAAACACAAAAAAATCATGTTGTACAAAAATGGCGATACTGAAAAATGTTATGCCCTCTGAA
Unaligned ( gi|13 ): TTAAAAGTACTATATTTACACAGCTAGGTGTACAGAGAAAAAATTGAGTGTGGATTTGCAATACAAAAATGGC
Unaligned ( gi|16 ): TGTACAAAATACCGTCATCCTTTGGTTTAAGTGCATTATATACACATTTAAGTGTATAGAGAAAA
Unaligned ( gi|21 ): AAAAATCAAACATATTCTCTCTCTCTGTCTATGTGA
Alignments
lowQualScore : 1 111 1 111 444444444444444 4444444444444444444 111111111 11111 111111111 1111111111 11111
lowQualScore : 4 6666 1 55 4 5 1 000 5 77 1 2 3 2 777 888888888888888 8 9999999999999999999 2 0 111111111 4 66666 1 7777 4 777777777 5555555555 66666 8 8
lowQualScore : . .... . .. . . . ... . .. . . . . ... ............... . ................... . . ......... . ..... . .... . ......... .......... ..... . .
lowQualScore : 4 9999 0 11 4 0 4 000 7 99 4 5 2 2 000 000000000000000 0 8888888888888888888 2 7 666666666 4 99999 9 9999 4 888888888 9999999999 00000 0 8
consensus : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCT-N-TCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT--AAG--AAAAAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATGT---GT-T---GAAAA---A-TAAA-AAAAAANAATTAAA
Reference ( family-6447 ) : ATGCAGAAA-AAT--T-TGNTGCCCTTT-GGAAC-A-G-ATGG---A-ACC--AAAT-CTTGAAATCTTTTCATAGCTCTCTCTCT-N-TCTCTCTTT--------T------TTTCT-CTCTCT--------CTCT--AAG-GAAAAAAATCAAACATTTCCGGAATTCTAT-----A---TAT-T-AT--TAGAG---ATGTACTTT-TAA---------AATGT---GT-T---GAAAA---A-TAAA-AAAAAANAATTAAA
gi|1 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCT-GGTCTCTCTTT--------T------TTTTTTCTCTCT--------CTCT--AA----AAAGAATTAAACATTTCTGGTATTCTAT-----A---TAT-TGAT--TAGA-----TGTACTTT-TAA---------AATAT---GT-T---GAAAA---AATAAA-AAAAAAAAATTAAA
gi|10 : tgATGCAGAAA-AAT--G-TGTTGCCCTTG-GGAAC-aatattga
gi|12 : gttttgcaaatatttttttttaaatcattctatgaaacacgaattcattttgtgaaaaaatggcgAAATCAAACATTTCCGGA-CTCTAT-----GCCCTATAT-ATA-TAGAG---ATGTACTAT-TAA---------AATGT---TA-TACAGAAAGTTTG-TGAA-AAAAAA-AATT
gi|14 : TTAGACATTTCTGGAATTCTAT-----A---TAT-C-ATTATAGAA---ATATACTTT-GAA---------AATGT---AT-
gi|15 : CT--------CTCT--GAG--AAAAAAATCAAACATTTCTGGAACACTAT-----A---CAT-T--T--TAAAG---ATGTCCTTT-TAA---------AATGT---AT-acagaagatttgttga
gi|17 : GCATAAA-AAT--T-CAATGCCCTTT-GGAAC-A-GCATAG---AGACC--AAAT-CTT
gi|18 : GAAA-AAT--T-TGATGCCCTTC-AGAAC-A-G-AAGG---A-ACC--AAAT-CTTttca
gi|19 : attAAA-AAT--TGTAATGCCCTTT-GGAAC-A-GAATGG---A-ACC--AAAT-Cttaat
gi|2 : ATGCAGAAA-AAT--G-TGTTG-CCGTG-GGAAC-A-gtttta
gi|20 : gggtataccaaaatactttcatcctttggttaaagtattatatttacacacgcctagcgtgcacgataaaacataattggtcagtgggttttgctaactactcctttttaaaattattctattgaaaacaccaaattcattttgtcaaaaatggtgTTTCCGGAATTCTAT-----A---TAT-T-AT--TATAGAAAATATAC-TT-TAA---------AA
gi|3 : ATGCAGAAA-ATT--T-TGTTGCCCTTT-TGAAC-A-G-ATGA---A-ACC--AAATACTTGAAATCTTTTCATAGCTCTCTCTCTGG-TCTCTCTTT--------T------TTTTT-CTCTCT--------CTCT--A----AAAAGAATTAAACATTTCTGGTATTCTAT-----A---TAT-T-AT--T-GAG---ATGTACTTT-TAA---------AATAT---GT-T---GAAAA---A-TAAA-AAAAAATAATTAAA
gi|4 : ATGCAGAAT-AATGCT-CGTTGCCC-TG-GGAACAA-G-ATGGTGAA-ACCCAAAAT-TTT
gi|5 : acaaaatactcctcactcctttgttaacagttaattatatttaacacagctaggtgcaaatatacaaatttcaattgggagtgtgggttctataaacacaaattcattttggacaaaaatggtgATGCAGAAAGAAT--T-TAATGCCCTTTTGGAAC-AAG-ATGG---A-ACC--AAAT-CTT--------TTCATAGNNNNNNNNNN-N-NNNNNNNNN--------N------NNNNN-NNNNNN--------NNNNCAAAA-AAAAAAAATCAAACATTTCTGGACTTATAT-----A---TAT-T-TT--T-------------TTT-GCG---------AATGTATTGT-T---GACAA---A-TAAA-AAAAAAAtcaa
gi|8 : TGAAATCTTTTCA--GTT-TCTCTAT-C-CCTTTCTTT--------C------TTTCT-CTCTCT---------TAT--AT------AAAAT-AAACACTTCTGGAATTCTTT-----A---TAT-T-ATTATAAAG---ATATACTTTGTAATGCATACAGAAGGT---TTCT---TAAAA---A-TAAATAAAAAAT
gi|9 : CTCTCTCTCT-C-TCTCTCTCTGAAAAAAATGAAACATTTCT-CTCTCTATCTGACACTCT--ATGTGAAAAAAATCAAACATTTTCGGGACTCTATAGCCAA---TAT-T-A---TAGAG---ATGTACTTT-TAA---------AATGT---cagggtattg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGTATACAAAATACCCTCATTCTTTGGTTAATGTGCTATATTTAGAAAGGTAGGTGAAAAAAGAAAAAAAATAGTTTTACAATCTTTTTAAAGTTATACTATGAAACAGAAAAAAAATCATTATCGTAAAAAATGTAACACTGAACATTTTGATGCCCTTTGAAAC
Unaligned ( gi|7 ): GGTATACAAAATATCCCCATCCTTTGGTTTAAGTACTATATTTACTCAACAAGGCATATAGAGAAAACAAAAATAAATAAGCAGTTTACAATACCATTTCTAAGTTTTATGAAACACAAACAACTATTTCATCCAAAAATAGTGATACTGA
Unaligned ( gi|11 ): TTGTAAAATCATTTTTTAAAGTTATTATACAAAACACAAAAAAATCATGTTGTACAAAAATGGCGATACTGAAAAATGTTATGCCCTCTGAA
Unaligned ( gi|13 ): TTAAAAGTACTATATTTACACAGCTAGGTGTACAGAGAAAAAATTGAGTGTGGATTTGCAATACAAAAATGGC
Unaligned ( gi|16 ): TGTACAAAATACCGTCATCCTTTGGTTTAAGTGCATTATATACACATTTAAGTGTATAGAGAAAA
Unaligned ( gi|21 ): AAAAATCAAACATATTCTCTCTCTCTGTCTATGTGA