lowQualScore : 111111111111111111
lowQualScore : 11111111 444444 1111 2 111 1111111111 77777777777777 1 22222 000000000000000000 11 1 222 333 3333 111111 1 2222222 33333333333 111 6666666
lowQualScore : 77777777 4 4 4 88 4 888888 0 2 4 66 4 7777 4 4 4 55 777 4 777 4 5 000 9999999999 6 3 77 22222222222222 5 00000 88 8 0 444444444444444444 88 3 333 111 8 3 1111 333333 5 1111111 11111111111 444 7777777 3
lowQualScore : ........ . . . .. . ...... . . . .. . .... . . . .. ... . ... . . ... .......... . . .. .............. . ..... .. . . .................. .. . ... ... . . .... ...... . ....... ........... ... ....... .
lowQualScore : 22222222 4 4 4 33 0 111111 1 9 4 11 4 4444 4 1 0 55 000 4 888 4 7 000 5555555555 3 0 99 77777777777777 3 00000 88 0 8 333333333333333333 33 3 333 333 0 8 0000 555555 2 7777777 00000000000 000 0000000 0
consensus : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC---GTATACAGCAGTCGTGA-TCTT--CA-T--CCGTTA-CAGTC-AAAACATTTGACGTC-A--CA---A-T---GC-AACGACCTTG-A---ATGCCA---GC-GCCGATTCTTTTCANT--CGTGGGAACA----T----TTTTTTCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATT--------CAG-TTG-ACTTTCAA--TCC-ACTTATT---GTGCACATAATGC-N-TTAT-AATAAAAACGATG-TATTCAGAA--C--GAAAGTATG------GGGTT-------A---GTAAG---AT-AGA-ATTAGAACCAAGG
Reference ( gi|4 ) : CCACGGAACATAGA-----GT-AAC-AAA-ATTCGA-AATACC-GGTATACAGCAGTCGTGA-TCTT--CA-T--ATGTTA-CAGTCCAAAACATTTGACGTC-A--CA---A-T---GC-AACGACCTTG-A---ATGCCA---GC-ACCGATTCTTTCCAAT--CGTGGGAAC-----T----TTCTTTCATCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTTTTTTCTAGGTTG-ACTTTCAA--TCC-ACTTATT---GTGCACATAATGC-T-TTAT-AATAAAAACA----TATTCAGAA--C--AAATGTATG------GGGTT-------A---GTAAG---AT-AGAAGCTAGAACTAAGGTGG
gi|7 : CCACGGAACATA-A-----GT-GAC-AAA-AGTCGA-AATA
gi|17 : aCCACGGAACATGGA-----GT-AAC-AAA-ATTCGA-AATA------ATACAGCAGTTGTGA-TCAC--CA-T--agtcaaaacatttgacgtcacaatgcaatgactttgaatgcgattctttccactcgtggacacattttctttcagcaaaacctctttgaaaacattggattgaaat
gi|16 : tgaCCACGGAACATGGATCGGAGT-AAC-AAA-ATTCGA-AATACc
gi|2 : aCACGGAACATTGA-----GT-AAT-AAA-ATTCGA-AATACA-TGTATACAGCAGTCGTAA-TCTT--CA-T--CCTTTA-CAGTC-AAAACATTTGACGTC-A--CA---A-T---GC-AACAACCTTG-A---ATGCCA---GC-GCCGATTTCTTTCACT--TGTGGGAA-------------CATTCAGCACGGACTTagtcaaaacatttgacgtcacaatgc
gi|8 : CACCAAACATAG-------T-GGC-AGA-ACATGA-AATACA-TGTATACGTT--TCATGA-TTTC--CGCT--CTGTTAACAATC-AAAACATCTGACATCTA--AATTGA-T---GCGAACTACA-TG-ATTCCTGCCATTGGCAATAGATTCTTT-CAAT--gacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaaataaaaacgtattcagaacgaaagtatgagctataggtgaataagatattagaaccaaggaaaacactattttttttattttaattta
gi|1 : atACGGAACATTTA-----GTGAAC-AAATAAGCGAGAATACTTAACATAGACAAGTC-TAA-TCTC--CA-T--CCATTA-CCGAACAAA-CTGTTGACGTC-A--CA---A-TTATGC-AACAACCTTGAA---ATGC-----GT-GCTGATTCTATTCACTTGTGTGGGAAA-----TGGA-CGTTTTCAGCACTGA---CCTTGAAAGATAGATATGCGGATAGGAAA----------CAGTTTGAACTTTTAA--TTCGACTTATTTGGGTGTACTAAATGCAT-GAAT-AATGAAAAGAATG-TAATCAGAAATG--AAAAGT-TG------AGGTTAACGTAGA---GTATG---ATCACACATTAGAACTAAG
gi|5 : tcatattttcatccactttgtactgggtcagtaaactaagaccacaGAACATTCA-----GC-AAA-ACA-AT--GA-AATA------A-ACAGTAGTCGTGA-TTTT--CA-T--CCGTTT-CAG-ACAAAACATTTGACGTC-ATGCA---A-T---GC-Aaatggtaagacgtgcattttt
gi|3 : aaaaaaaaaaaaaaaaacagaaaaaaaactgtcggactgctacacataaattatttaatgcgtcaccgacATAAA-----GT-AACCAAA-ATTCAA-A--------TATACAGCAATCGTGAATCTTACCA-TTTACGTTA-CAGTCAAAATCATTTGACGTC-A--CA---AAT---GC-AACGACCTTG-A---AC-TCA---GC-GCCGATTCTCTTCAAT--CGTGAGAACAAACAT----TTTTTCCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGA--------------------ACTTTCAATTTCC-ACTTATT---GTACAAATAATGC-CATTAT-AATAAAAAAAATGGTATTCAGAA--CCGAAACGTAGT------GGGTT-------A---GTAAG---AT-AG----TAGAACCAAGtctgccaactcgaaaagtagtcatggggacatttatcggcacgga
gi|10 : -----GT-AAA-AAA-A---GA-AATACA-CATGTACAGCAGTTGTCA-TCTT--TA-T--CCGTTA-AAGTCT-AAACACTTGACGTC-A--CA---agatgggacattattatttcactgttagtttcaattt
gi|14 : ttacagtgGA-AATAC-------ACGGCAGTC------------------TGTTA-CAATG-AAAACATTTGATGTC-A--CA---A-T---GC-AGTGGCCTTG-A---A
gi|9 : ccagggaacaatGTGA-TCTT--CA-T--ACGTTA-CAGTC-AAAACATTAGACGTC-A--CA---A-T---GC-GACGACCTTG-A---ATGCTA---GC-GCTGATTCTTTCCTAT--CGTGGGAACAAACAT----TT-TTTCAGCACGGA
gi|16 : TA-CAGTC-AAAACATTTGACGTC-A--CA---A-T---GC-
gi|7 : accacggaacatggatcggagtaacaaaattcgaaaAGTC-AAAACATTTGACGTC-A--CA---A-T---GC-AATGACTTTG-A---ATG-----------CGATTCTTTCCACT--CGTGGACACAT---T----TTCTTTCAGCA-AAACCTCTTTGAAA-----ACAT-TGGAT-TGAAAT
gi|6 : accacggaacataagtgacaaaagtcgaaataT--CGTGGGAAC-----GAACATTTTATCAACACGGACCTCCTTGAAA-----ACAT-TGAAT-TGGAATTCTTAATTCTAAGTTG-ACTTTCAA--TCC-ACTTATT---GTGCACATAATGC-A-TTAT-GAT-AAAACG----TATTCAGAA--C--GAAAGTATG------GG
gi|12 : acgCACGGACCTCCTTGAAA-----ACA---GGAT-TGAAATTtt
gi|13 : gTATCAGTAAAAGCG----TATTCAGAA--C--GAAAGTAT-------GAGTT-------ACATGTAGGTGAATAAGATATTAGAACCAAGtcaataatttaacacatataaacaaatttttaaattaaacaatggt
gi|2 : tcaatga-AATAAAAACG----TATTCAGAA--C--GAAAGTATGAGCTATAGGTG-------A---ATAAG---AT-A----TTAGAACCAAGGaa
gi|15 : cacggaacattgagtaataaaattcgaaatacatgtatacagcagtcgtaatcttcatcctttacagtcaaaacatttgacgtcacaatgcaacaaccttgaatgccagcgccgatttctttcacttgtgggaacattcagcacggacttgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaGAA--C--GAAAGTATG------AGGTC-------A---TTAAG---AT-A----TTAGAACCAAGGaaaacactattttttttattttaattta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TACAATGTACATCTTCTGTTACCAAAAAAAAAAAAAAAAATATATGCGATACAAAGTATACAAATTGGTATGTACATGC
Unaligned ( gi|18 ): TACATTTTCACCATCTTGTTTGGTTCAATCATACTTTGACAAATA
Unaligned ( gi|19 ): AACCAAGGAAGACATTATTTTTAGTTCAATTTCAATC
Alignments
lowQualScore : 11111111 2222 1111 1111 444444444444 11111 8888888888888888888 11 1 111 333333 1111111 222 111 5555555555555
lowQualScore : 22222222 4 4 4 55 4 4444 0000 5 5 4 66 4 55 4 3 3 55 777 4 0 5 6 3 2222 0 0 1 5 222222222222 5 5 66666 6 6 5555555555555555555 33 0 777 8 1 6 6 444444 5 5 5 5 7777777 000 111 3333333333333
lowQualScore : ........ . . . .. . .... .... . . . .. . .. . . . .. ... . . . . . .... . . . . ............ . . ..... . . ................... .. . ... . . . . ...... . . . . ....... ... ... .............
lowQualScore : 00000000 0 0 0 77 0 4444 9999 0 0 4 11 0 55 0 6 6 55 000 4 2 0 6 0 1111 3 9 0 0 666666666666 0 0 77777 7 7 0000000000000000000 88 0 555 0 0 7 7 888888 7 7 7 7 1111111 888 777 7777777777777
consensus : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTCA--CA---A-TGCAACGACCTTG-AATGCCAGCGCCGA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-AATAAAAACGAC-GTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
Reference ( family-6428 ) : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTCA--CA---A-TGCAACGACCTTG-AATGCCAGCGCCGA----TTCTTTTCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC---------AGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CNTT-AT-AATAAAAACGAT-GTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
gi|1 : ACGGAACATTTA-----GTGAAC-AAATAAGCGAGAATAC--TTAAC--ATAGACAAGTC-TAA-TCTC--CA-TC--CATTA-CCGAA-CAAA-CTGTTGACGTCA--CAATTA-TGCAACAACCTTGAAATGC--GTGCTGA----TTCTATTCACTTGTGTGGGAA--A----TGGACGT-TT-TCAGCACTGA---CCTTGAAAGATAGATATGCGGATAGGAAA--C---------AGTTTGAACTTTTAA--TTCGACTTATTTGGGTGTACTAAATG-CATGAAT-AATGAAAAGAAT-GTAATCAGAAA-TGAAAA-GT-TG------AGGTTAAC-GTAGA---GT-ATGATCACACA-TTAGAACTAAG
gi|10 : tcatattttcatccactttgtactgggtcagtaaactaagaccaca-----GT-AAA-AAA-A---GA-AATAC--ACA-TGTACAG-CA-GTTGTCA-TCTT--TA-TC--CGTTA-AAGTC-TAAA-CACTTGACGTCA--CA---aatggtaagacgtgcattttt
gi|12 : ttacagtgGCACGGACCTCCTTGAAA-----ACA---GGAT-TGAAATT
gi|13 : T-ATCAGTAAAAGCG----TATTCAG-AA-CG-AAA-GTAT-------GAGTTACATGTAGGTGAATAA-GAT-----A-TTAGAACCAAGtcaataatttaacacatataaacaaatttttaaattaaacaatggt
gi|14 : tcaatga-TC--TGTTA-CAATG-AAAA-CATTTGATGTCA--CA---A-TGCAGTGGCCTTG-AAaa
gi|15 : ccagggaacaatgaaatacacggcagG-AA-CG-AAA-GTATG------AGGTCA---TTAAG---AT-----------A-TTAGAACCAAGG
gi|16 : CCACGGAACATGGATCGGAGT-AAC-AAA-ATTCGA-AATAC--gagacattttttacttcaatttcaat
gi|16 : aTA-CAGTC-AAAA-CATTTGACGTCA--CA---A-TGCagtcaaaacatttgacgtcacaatgc
gi|17 : accacggaacatggatcggagtaacaaaattcgaaaCCACGGAACATGGA-----GT-AAC-AAA-ATTCGA-AATA-----A-T--ACAG-CA-GTTGTGA-TCAC--CA-TC--
gi|2 : tgaCACGGAACATTGA-----GT-AAT-AAA-ATTCGA-AATACATGTA-T--ACAG-CA-GTCGTAA-TCTT--CA-TC--CTTTA-CAGTC-AAAA-CATTTGACGTCA--CA---A-TGCAACAACCTTG-AATGCCAGCGCCGA----TTTCTTTCACTTGTG-GGAAC--A-------------T-TCAGCACGGACTT
gi|2 : AAT--CATT-GA-AATAAAAACG----TATTCAG-AA-CG-AAA-GTATGAGCTATAGGTGA---ATAAG---AT-----------A-TTAGAACCAAGGgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaaataaaaacgtattcagaacgaaagtatgagctataggtgaataagatattagaaccaaggaaaacactattttttttattttaattta
gi|3 : cacggaacattgagtaataaaattcgaaatacatgtatacagcagtcgtaatcttcatcctttacagtcaaaacatttgacgtcacaatgcaacaaccttgaatgccagcgccgatttctttcacttgtgggaacattcagcacggacttgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcATAAA-----GT-AACCAAA-ATTCAA-A-------TA-T--ACAG-CA-ATCGTGAATCTTACCA-TTTACGTTA-CAGTC-AAAATCATTTGACGTCA--CA---AATGCAACGACCTTG-AAC-TCAGCGCCGA----TTCTCTTCAATCGTG-AGAAC--AAACAT---TTT-TT-CCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGA---------------------ACTTTCAATTTCC-ACTTATT---GTACAAATAATGCCATT-AT-AATAAAAAAAATGGTATTCAG-AACCG-AAACGTAGT------GGGTTA---GTAAG---AT-A-G----------TAGAACCAAGaaaacactattttttttattttaattta
gi|4 : CCACGGAACATAGA-----GT-AAC-AAA-ATTCGA-AATACCGGTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TA--TGTTA-CAGTCCAAAA-CATTTGACGTCA--CA---A-TGCAACGACCTTG-AATGCCAGCACCGA----TTCTTTCCAATCGTG-GGAAC-------T---TTC-TT-TCATCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTTTTTTCTAGGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CTTT-AT-AATAAAAAC----ATATTCAG-AA-CA-AAT-GTATG------GGGTTA---GTAAG---AT-A-GA------AGCTAGAACTAAGGagatgggacattattatttcactgttagtttcaattt
gi|5 : GAACATTCA-----GC-AAA-ACA-AT--GA-AATA-----A----ACAG-TA-GTCGTGA-TTTT--CA-TC--CGTTT-CAGAC-AAAA-CATTTGACGTCATGCA---A-TGCATC----------TGCCAAC-TCGAAAAGT-------AGTCATG-GGGAC--A---------TT-TA-TCGGCACGGAtgg
gi|6 : aaaaaaaaaaaaaaaaacagaaaaaaaactgtcggactgctacacataaattatttaatgcgtcaccgacTCGTG-GGAACGAA----C---ATT-TTATCAACACGGACCTCCTTGAAA-----ACAT-TGAAT-TGGAATTCTTAATTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-GATAAA----AC-GTATTCAG-AA-CG-AAA-GTATG------GG
gi|7 : acgCCACGGAACATA-A-----GT-GAC-AAA-AGTCGA-AATAA--GTtt
gi|7 : aAGTC-AAAA-CATTTGACGTCA--CA---A-TGCAATGACTTTG-AATGC-------GA----TTCTTTCCACTCGTG-GACAC--A----T---TTTCTT-TCAGCA-AAACCTCTTTGAAA-----ACAT-TGGAT-TGAAATcaaaacatttgacgtcacaatgcaatgactttgaatgcgattctttccactcgtggacacattttctttcagcaaaacctctttgaaaacattggattgaaat
gi|8 : accacggaacataagtgacaaaagtcgaaataCACCAAACAT--A-----GT-GGC-AGA-ACATGA-AATACATGTA-T--ACGT-T---TCATGA-TTTC--CGCTC--TGTTAACAATC-AAAA-CATCTGACATC
gi|9 : atGTGA-TCTT--CA-TA--CGTTA-CAGTC-AAAA-CATTAGACGTCA--CA---A-TGCGACGACCTTG-AATGCTAGCGCTGA----TTCTTTCCTATCGTG-GGAAC--AAAC-A---TTT-TT-TCAGCACGGAtaaattgatgcgaactacatgattcctgccattggcaatagattctttcaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACAATGTACATCTTCTGTTACCAAAAAAAAAAAAAAAAATATATGCGATACAAAGTATACAAATTGGTATGTACATGC
Unaligned ( gi|18 ): TACATTTTCACCATCTTGTTTGGTTCAATCATACTTTGACAAATA
Unaligned ( gi|19 ): AACCAAGGAAGACATTATTTTTAGTTCAATTTCAATC
Alignments
lowQualScore : 11111111 2222 1111 111 1111 1111 444444444444 11111 66666666666666666666 11 1 111 3333333 1111111 222 111 5555555555555
lowQualScore : 22222222 4 4 4 55 4 4444 0000 5 5 4 66 4 55 4 3 3 3 55 222 4 4 1 4 777 4 1 0000 0000 1 5 222222222222 5 5 66666 6 6 11111111111111111111 33 0 777 8 6 6 4444444 5 5 5 5 7777777 000 111 3333333333333
lowQualScore : ........ . . . .. . .... .... . . . .. . .. . . . . .. ... . . . . ... . . .... .... . . ............ . . ..... . . .................... .. . ... . . . ....... . . . . ....... ... ... .............
lowQualScore : 00000000 0 0 0 77 0 4444 9999 0 0 4 11 0 55 0 6 6 6 00 777 0 0 9 4 888 5 4 6666 6666 0 0 666666666666 0 0 77777 7 7 11111111111111111111 88 0 555 0 7 7 7777777 7 7 7 7 1111111 888 777 7777777777777
consensus : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-AATAAAAA-GAC-GTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
Reference ( family-6428 ) : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-AATAAAAACGAC-GTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
gi|1 : ACGGAACATTTA-----GTGAAC-AAATAAGCGAGAATAC--TTAAC--ATAGACAAGTC-TAA-TCTC--CA-TC--CATTA-CCGAA-CAAA-CTGTTGACGTC-A--CAATTA-TGC-AACAACCTTGAA---ATGC--GTGCT----GA----TTCTATTCACTTGTGTGGGAA--A----TGGACGT-TT-TCAGCACTGA---CCTTGAAAGATAGATATGCGGATAGGAAAC-------------AGTTTGAACTTTTAA--TTCGACTTATTTGGGTGTACTAAATG-CATGAAT-AATGAAAAGAAT-GTAATCAGAAA-TGAAAA-GT-TG------AGGTTAAC-GTAGA---GT-ATGATCACACA-TTAGAACTAAG
gi|10 : tcatattttcatccactttgtactgggtcagtaaactaagaccaca-----GT-AAA-AAA-A---GA-AATAC--ACA-TGTACAG-CA-GTTGTCA-TCTT--TA-TC--CGTTA-AAGTC-TAAA-CACTTGACGTC-A--CA---aatggtaagacgtgcattttt
gi|12 : ttacagtgGCACGGACCTCCTTGAAA-----ACA---GGAT-TGAAATT
gi|13 : T-ATCAGTAAAAGCG----TATTCAG-AA-CG-AAA-GTAT-------GAGTTACATGTAGGTGAATAA-GAT-----A-TTAGAACCAAGtcaataatttaacacatataaacaaatttttaaattaaacaatggt
gi|14 : tcaatga-TC--TGTTA-CAATG-AAAA-CATTTGATGTC-A--CA---A-TGC-AGTGGCCTTG-A---Aaa
gi|15 : ccagggaacaatgaaatacacggcagG-AA-CG-AAA-GTATG------AGGTCA---TTAAG---AT-----------A-TTAGAACCAAGG
gi|16 : CCACGGAACATGGATCGGAGT-AAC-AAA-ATTCGA-AATAC--gagacattttttacttcaatttcaat
gi|16 : aTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-agtcaaaacatttgacgtcacaatgc
gi|17 : accacggaacatggatcggagtaacaaaattcgaaaCCACGGAACATGGA-----GT-AAC-AAA-ATTCGA-AATA-----A-T--ACAG-CA-GTTGTGA-TCAC--CA-TC--
gi|2 : tgaCACGGAACATTGA-----GT-AAT-AAA-ATTCGA-AATACATGTA-T--ACAG-CA-GTCGTAA-TCTT--CA-TC--CTTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACAACCTTG-A---ATGCCAGCGCC----GA----TTTCTTTCACTTGTG-GGAAC--A-------------T-TCAGCACGGACTT
gi|2 : AAT--CATT-GA-AATAAAAACG----TATTCAG-AA-CG-AAA-GTATGAGCTATAGGTGA---ATAAG---AT-----------A-TTAGAACCAAGGgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaaataaaaacgtattcagaacgaaagtatgagctataggtgaataagatattagaaccaaggaaaacactattttttttattttaattta
gi|3 : cacggaacattgagtaataaaattcgaaatacatgtatacagcagtcgtaatcttcatcctttacagtcaaaacatttgacgtcacaatgcaacaaccttgaatgccagcgccgatttctttcacttgtgggaacattcagcacggacttgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcATAAA-----GT-AACCAAA-ATTCAA-A-------TA-T--ACAG-CA-ATCGTGAATCTTACCA-TTTACGTTA-CAGTC-AAAATCATTTGACGTC-A--CA---AATGC-AACGACCTTG-A---AC-TCAGCGCC----GA----TTCTCTTCAATCGTG-AGAAC--AAACAT---TTT-TT-CCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGA-----------------------ACTTTCAATTTCC-ACTTATT---GTACAAATAATGCCATT-AT-AATAAAAAAAATGGTATTCAG-AACCG-AAACGTAGT------GGGTTA---GTAAG---AT-A-G----------TAGAACCAAGaaaacactattttttttattttaattta
gi|4 : CCACGGAACATAGA-----GT-AAC-AAA-ATTCGA-AATACCGGTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TA--TGTTA-CAGTCCAAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCACC----GA----TTCTTTCCAATCGTG-GGAAC-------T---TTC-TT-TCATCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTTTT--TTCTAGGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CTTT-AT-AATAAAA---AC-ATATTCAG-AA-CA-AAT-GTATG------GGGTTA---GTAAG---AT-A-GA------AGCTAGAACTAAGGagatgggacattattatttcactgttagtttcaattt
gi|5 : GAACATTCA-----GC-AAA-ACA-AT--GA-AATA-----A----ACAG-TA-GTCGTGA-TTTT--CA-TC--CGTTT-CAGAC-AAAA-CATTTGACGTC-ATGCA---A-TGC-ATC-------------TGCCAAC-TC----GAAAAGT-------AGTCATG-GGGAC--A---------TT-TA-TCGGCACGGAtgg
gi|6 : aaaaaaaaaaaaaaaaacagaaaaaaaactgtcggactgctacacataaattatttaatgcgtcaccgacTCGTG-GGAACGAA----C---ATT-TTATCAACACGGACCTCCTTGAAA-----ACAT-TGAAT-TGGAATTC--TTAATTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-GATAAA----AC-GTATTCAG-AA-CG-AAA-GTATG------GG
gi|7 : acgCCACGGAACATA-A-----GT-GAC-AAA-AGTCGA-AATAA--GTtt
gi|7 : aAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AATGACTTTG-A---ATGC-----------GA----TTCTTTCCACTCGTG-GACAC--A----T---TTTCTT-TCAGCA-AAACCTCTTTGAAA-----ACAT-TGGAT-TGAAATcaaaacatttgacgtcacaatgcaatgactttgaatgcgattctttccactcgtggacacattttctttcagcaaaacctctttgaaaacattggattgaaat
gi|8 : accacggaacataagtgacaaaagtcgaaataCACCAAACAT--A-----GT-GGC-AGA-ACATGA-AATACATGTA-T--ACGT-T---TCATGA-TTTC--CGCTC--TGTTAACAATC-AAAA-CATCTGACATCTA--AATTGA-TGCGAACTACA-TG-ATTCCTGCCATTGGCAATAGA----TTCTTTC
gi|9 : atGTGA-TCTT--CA-TA--CGTTA-CAGTC-AAAA-CATTAGACGTC-A--CA---A-TGC-GACGACCTTG-A---ATGCTAGCGCT----GA----TTCTTTCCTATCGTG-GGAAC--AAAC-A---TTT-TT-TCAGCACGGAaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACAATGTACATCTTCTGTTACCAAAAAAAAAAAAAAAAATATATGCGATACAAAGTATACAAATTGGTATGTACATGC
Unaligned ( gi|18 ): TACATTTTCACCATCTTGTTTGGTTCAATCATACTTTGACAAATA
Unaligned ( gi|19 ): AACCAAGGAAGACATTATTTTTAGTTCAATTTCAATC
Alignments
lowQualScore : 11111111 2222 1111 111 1111 1111 444444444444 11111 66666666666666666666 11 1 111 333333 1111111 222 111 5555555555555
lowQualScore : 22222222 4 4 4 55 4 4444 0000 5 5 4 66 4 55 4 3 3 3 55 222 4 4 1 4 777 4 1 0000 0000 1 5 222222222222 5 5 66666 6 6 11111111111111111111 33 0 777 8 8 111111 5 5 5 5 7777777 000 111 3333333333333
lowQualScore : ........ . . . .. . .... .... . . . .. . .. . . . . .. ... . . . . ... . . .... .... . . ............ . . ..... . . .................... .. . ... . . ...... . . . . ....... ... ... .............
lowQualScore : 00000000 0 0 0 77 0 4444 9999 0 0 4 11 0 55 0 6 6 6 00 777 0 0 9 4 888 5 4 6666 6666 0 0 666666666666 0 0 77777 7 7 11111111111111111111 88 0 555 0 0 555555 7 7 7 7 1111111 888 777 7777777777777
consensus : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATAATAAAAAG-A--CGTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
Reference ( family-6428 ) : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATAATAAAAAG-A--CGTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
gi|1 : ACGGAACATTTA-----GTGAAC-AAATAAGCGAGAATAC--TTAAC--ATAGACAAGTC-TAA-TCTC--CA-TC--CATTA-CCGAA-CAAA-CTGTTGACGTC-A--CAATTA-TGC-AACAACCTTGAA---ATGC--GTGCT----GA----TTCTATTCACTTGTGTGGGAA--A----TGGACGT-TT-TCAGCACTGA---CCTTGAAAGATAGATATGCGGATAGGAAAC-------------AGTTTGAACTTTTAA--TTCGACTTATTTGGGTGTACTAAATG-CATGAATAATGAAAAGAA--TGTAATCAGAAA-TGAAAA-GT-TG------AGGTTAAC-GTAGA---GT-ATGATCACACA-TTAGAACTAAG
gi|10 : tcatattttcatccactttgtactgggtcagtaaactaagaccaca-----GT-AAA-AAA-A---GA-AATAC--ACA-TGTACAG-CA-GTTGTCA-TCTT--TA-TC--CGTTA-AAGTC-TAAA-CACTTGACGTC-A--CA---aatggtaagacgtgcattttt
gi|12 : ttacagtgGCACGGACCTCCTTGAAA-----ACA---GGAT-TGAAATT
gi|13 : AAAAG----CGTATTCAG-AA-CG-AAA-GTAT-------GAGTTACATGTAGGTGAATAA-GAT-----A-TTAGAACCAAGtcaataatttaacacatataaacaaatttttaaattaaacaatggt
gi|14 : tcaatgatatcagt-TC--TGTTA-CAATG-AAAA-CATTTGATGTC-A--CA---A-TGC-AGTGGCCTTG-A---Aaa
gi|15 : ccagggaacaatgaaatacacggcagG-AA-CG-AAA-GTATG------AGGTCA---TTAAG---AT-----------A-TTAGAACCAAGG
gi|16 : CCACGGAACATGGATCGGAGT-AAC-AAA-ATTCGA-AATAC--gagacattttttacttcaatttcaat
gi|16 : aTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-agtcaaaacatttgacgtcacaatgc
gi|17 : accacggaacatggatcggagtaacaaaattcgaaaCCACGGAACATGGA-----GT-AAC-AAA-ATTCGA-AATA-----A-T--ACAG-CA-GTTGTGA-TCAC--CA-TC--
gi|2 : tgaCACGGAACATTGA-----GT-AAT-AAA-ATTCGA-AATACATGTA-T--ACAG-CA-GTCGTAA-TCTT--CA-TC--CTTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACAACCTTG-A---ATGCCAGCGCC----GA----TTTCTTTCACTTGTG-GGAAC--A-------------T-TCAGCACGGACTT
gi|2 : AAT--CATT-GAAATAAAAA-----CGTATTCAG-AA-CG-AAA-GTATGAGCTATAGGTGA---ATAAG---AT-----------A-TTAGAACCAAGGgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaaataaaaacgtattcagaacgaaagtatgagctataggtgaataagatattagaaccaaggaaaacactattttttttattttaattta
gi|3 : cacggaacattgagtaataaaattcgaaatacatgtatacagcagtcgtaatcttcatcctttacagtcaaaacatttgacgtcacaatgcaacaaccttgaatgccagcgccgatttctttcacttgtgggaacattcagcacggacttgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcATAAA-----GT-AACCAAA-ATTCAA-A-------TA-T--ACAG-CA-ATCGTGAATCTTACCA-TTTACGTTA-CAGTC-AAAATCATTTGACGTC-A--CA---AATGC-AACGACCTTG-A---AC-TCAGCGCC----GA----TTCTCTTCAATCGTG-AGAAC--AAACAT---TTT-TT-CCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGA-----------------------ACTTTCAATTTCC-ACTTATT---GTACAAATAATGCCATT-ATAATAAAAAA-AATGGTATTCAG-AACCG-AAACGTAGT------GGGTTA---GTAAG---AT-A-G----------TAGAACCAAGaaaacactattttttttattttaattta
gi|4 : CCACGGAACATAGA-----GT-AAC-AAA-ATTCGA-AATACCGGTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TA--TGTTA-CAGTCCAAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCACC----GA----TTCTTTCCAATCGTG-GGAAC-------T---TTC-TT-TCATCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTTTT--TTCTAGGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CTTT-ATAATAAAA---A--CATATTCAG-AA-CA-AAT-GTATG------GGGTTA---GTAAG---AT-A-GA------AGCTAGAACTAAGGagatgggacattattatttcactgttagtttcaattt
gi|5 : GAACATTCA-----GC-AAA-ACA-AT--GA-AATA-----A----ACAG-TA-GTCGTGA-TTTT--CA-TC--CGTTT-CAGAC-AAAA-CATTTGACGTC-ATGCA---A-TGC-ATC-------------TGCCAAC-TC----GAAAAGT-------AGTCATG-GGGAC--A---------TT-TA-TCGGCACGGAtgg
gi|6 : aaaaaaaaaaaaaaaaacagaaaaaaaactgtcggactgctacacataaattatttaatgcgtcaccgacTCGTG-GGAACGAA----C---ATT-TTATCAACACGGACCTCCTTGAAA-----ACAT-TGAAT-TGGAATTC--TTAATTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATGATAAA----A--CGTATTCAG-AA-CG-AAA-GTATG------GG
gi|7 : acgCCACGGAACATA-A-----GT-GAC-AAA-AGTCGA-AATAA--GTtt
gi|7 : aAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AATGACTTTG-A---ATGC-----------GA----TTCTTTCCACTCGTG-GACAC--A----T---TTTCTT-TCAGCA-AAACCTCTTTGAAA-----ACAT-TGGAT-TGAAATcaaaacatttgacgtcacaatgcaatgactttgaatgcgattctttccactcgtggacacattttctttcagcaaaacctctttgaaaacattggattgaaat
gi|8 : accacggaacataagtgacaaaagtcgaaataCACCAAACAT--A-----GT-GGC-AGA-ACATGA-AATACATGTA-T--ACGT-T---TCATGA-TTTC--CGCTC--TGTTAACAATC-AAAA-CATCTGACATCTA--AATTGA-TGCGAACTACA-TG-ATTCCTGCCATTGGCAATAGA----TTCTTTC
gi|9 : atGTGA-TCTT--CA-TA--CGTTA-CAGTC-AAAA-CATTAGACGTC-A--CA---A-TGC-GACGACCTTG-A---ATGCTAGCGCT----GA----TTCTTTCCTATCGTG-GGAAC--AAAC-A---TTT-TT-TCAGCACGGAaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACAATGTACATCTTCTGTTACCAAAAAAAAAAAAAAAAATATATGCGATACAAAGTATACAAATTGGTATGTACATGC
Unaligned ( gi|18 ): TACATTTTCACCATCTTGTTTGGTTCAATCATACTTTGACAAATA
Unaligned ( gi|19 ): AACCAAGGAAGACATTATTTTTAGTTCAATTTCAATC
Alignments
lowQualScore : 11111111 2222 1111 111 1111 1111 444444444444 11111 66666666666666666666 11 1 111 333333 1111111 222 111 5555555555555
lowQualScore : 22222222 4 4 4 55 4 4444 0000 5 5 4 66 4 55 4 3 3 3 55 222 4 4 1 4 777 4 1 0000 0000 1 5 222222222222 5 5 66666 6 6 11111111111111111111 33 0 777 8 8 111111 5 5 5 5 7777777 000 111 3333333333333
lowQualScore : ........ . . . .. . .... .... . . . .. . .. . . . . .. ... . . . . ... . . .... .... . . ............ . . ..... . . .................... .. . ... . . ...... . . . . ....... ... ... .............
lowQualScore : 00000000 0 0 0 77 0 4444 9999 0 0 4 11 0 55 0 6 6 6 00 777 0 0 9 4 888 5 4 6666 6666 0 0 666666666666 0 0 77777 7 7 11111111111111111111 88 0 555 0 0 555555 7 7 7 7 1111111 888 777 7777777777777
consensus : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATAATAAAAAG-A--CGTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
Reference ( family-6428 ) : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATAATAAAAAG-A--CGTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
gi|1 : ACGGAACATTTA-----GTGAAC-AAATAAGCGAGAATAC--TTAAC--ATAGACAAGTC-TAA-TCTC--CA-TC--CATTA-CCGAA-CAAA-CTGTTGACGTC-A--CAATTA-TGC-AACAACCTTGAA---ATGC--GTGCT----GA----TTCTATTCACTTGTGTGGGAA--A----TGGACGT-TT-TCAGCACTGA---CCTTGAAAGATAGATATGCGGATAGGAAAC-------------AGTTTGAACTTTTAA--TTCGACTTATTTGGGTGTACTAAATG-CATGAATAATGAAAAGAA--TGTAATCAGAAA-TGAAAA-GT-TG------AGGTTAAC-GTAGA---GT-ATGATCACACA-TTAGAACTAAG
gi|10 : tcatattttcatccactttgtactgggtcagtaaactaagaccaca-----GT-AAA-AAA-A---GA-AATAC--ACA-TGTACAG-CA-GTTGTCA-TCTT--TA-TC--CGTTA-AAGTC-TAAA-CACTTGACGTC-A--CA---aatggtaagacgtgcattttt
gi|12 : ttacagtgGCACGGACCTCCTTGAAA-----ACA---GGAT-TGAAATT
gi|13 : AAAAG----CGTATTCAG-AA-CG-AAA-GTAT-------GAGTTACATGTAGGTGAATAA-GAT-----A-TTAGAACCAAGtcaataatttaacacatataaacaaatttttaaattaaacaatggt
gi|14 : tcaatgatatcagt-TC--TGTTA-CAATG-AAAA-CATTTGATGTC-A--CA---A-TGC-AGTGGCCTTG-A---Aaa
gi|15 : ccagggaacaatgaaatacacggcagG-AA-CG-AAA-GTATG------AGGTCA---TTAAG---AT-----------A-TTAGAACCAAGG
gi|16 : CCACGGAACATGGATCGGAGT-AAC-AAA-ATTCGA-AATAC--gagacattttttacttcaatttcaat
gi|16 : aTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-agtcaaaacatttgacgtcacaatgc
gi|17 : accacggaacatggatcggagtaacaaaattcgaaaCCACGGAACATGGA-----GT-AAC-AAA-ATTCGA-AATA-----A-T--ACAG-CA-GTTGTGA-TCAC--CA-TC--
gi|2 : tgaCACGGAACATTGA-----GT-AAT-AAA-ATTCGA-AATACATGTA-T--ACAG-CA-GTCGTAA-TCTT--CA-TC--CTTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACAACCTTG-A---ATGCCAGCGCC----GA----TTTCTTTCACTTGTG-GGAAC--A-------------T-TCAGCACGGACTT
gi|2 : AAT--CATT-GAAATAAAAA-----CGTATTCAG-AA-CG-AAA-GTATGAGCTATAGGTGA---ATAAG---AT-----------A-TTAGAACCAAGGgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaaataaaaacgtattcagaacgaaagtatgagctataggtgaataagatattagaaccaaggaaaacactattttttttattttaattta
gi|3 : cacggaacattgagtaataaaattcgaaatacatgtatacagcagtcgtaatcttcatcctttacagtcaaaacatttgacgtcacaatgcaacaaccttgaatgccagcgccgatttctttcacttgtgggaacattcagcacggacttgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcATAAA-----GT-AACCAAA-ATTCAA-A-------TA-T--ACAG-CA-ATCGTGAATCTTACCA-TTTACGTTA-CAGTC-AAAATCATTTGACGTC-A--CA---AATGC-AACGACCTTG-A---AC-TCAGCGCC----GA----TTCTCTTCAATCGTG-AGAAC--AAACAT---TTT-TT-CCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGA-----------------------ACTTTCAATTTCC-ACTTATT---GTACAAATAATGCCATT-ATAATAAAAAA-AATGGTATTCAG-AACCG-AAACGTAGT------GGGTTA---GTAAG---AT-A-G----------TAGAACCAAGaaaacactattttttttattttaattta
gi|4 : CCACGGAACATAGA-----GT-AAC-AAA-ATTCGA-AATACCGGTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TA--TGTTA-CAGTCCAAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCACC----GA----TTCTTTCCAATCGTG-GGAAC-------T---TTC-TT-TCATCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTTTT--TTCTAGGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CTTT-ATAATAAAA---A--CATATTCAG-AA-CA-AAT-GTATG------GGGTTA---GTAAG---AT-A-GA------AGCTAGAACTAAGGagatgggacattattatttcactgttagtttcaattt
gi|5 : GAACATTCA-----GC-AAA-ACA-AT--GA-AATA-----A----ACAG-TA-GTCGTGA-TTTT--CA-TC--CGTTT-CAGAC-AAAA-CATTTGACGTC-ATGCA---A-TGC-ATC-------------TGCCAAC-TC----GAAAAGT-------AGTCATG-GGGAC--A---------TT-TA-TCGGCACGGAtgg
gi|6 : aaaaaaaaaaaaaaaaacagaaaaaaaactgtcggactgctacacataaattatttaatgcgtcaccgacTCGTG-GGAACGAA----C---ATT-TTATCAACACGGACCTCCTTGAAA-----ACAT-TGAAT-TGGAATTC--TTAATTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATGATAAA----A--CGTATTCAG-AA-CG-AAA-GTATG------GG
gi|7 : acgCCACGGAACATA-A-----GT-GAC-AAA-AGTCGA-AATAA--GTtt
gi|7 : aAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AATGACTTTG-A---ATGC-----------GA----TTCTTTCCACTCGTG-GACAC--A----T---TTTCTT-TCAGCA-AAACCTCTTTGAAA-----ACAT-TGGAT-TGAAATcaaaacatttgacgtcacaatgcaatgactttgaatgcgattctttccactcgtggacacattttctttcagcaaaacctctttgaaaacattggattgaaat
gi|8 : accacggaacataagtgacaaaagtcgaaataCACCAAACAT--A-----GT-GGC-AGA-ACATGA-AATACATGTA-T--ACGT-T---TCATGA-TTTC--CGCTC--TGTTAACAATC-AAAA-CATCTGACATCTA--AATTGA-TGCGAACTACA-TG-ATTCCTGCCATTGGCAATAGA----TTCTTTC
gi|9 : atGTGA-TCTT--CA-TA--CGTTA-CAGTC-AAAA-CATTAGACGTC-A--CA---A-TGC-GACGACCTTG-A---ATGCTAGCGCT----GA----TTCTTTCCTATCGTG-GGAAC--AAAC-A---TTT-TT-TCAGCACGGAaat
blockSeqs : GGATCGGA . C . TT . CATG TGT . . A AC C TA A C T T TG TTG A G G . TTC C G AATA AAAG C . AAACATT C A . . . TCTTTTTTCTAGGTTG TT . . C . AAAAT . C . C GAGCTAT CAT TGA AAGATA
blockSeqs : GGA . . . TT . CCGG T . . . . . . . . . . . . . . A . . C G . . A . AAACAT . . . . . TCTTAATTCTAAGTTG . . . . . AG . . . . G . . AGAAG
blockSeqs : TGA . . . TT . CATG T . . . . . . . . . . . . . . G . . C A . . A . GAACA . . . . . . . . . . . A . . . . T . . AG
blockSeqs : AAA . . . TT . CA T . . . . . . . . . . . . . . G . . C G . . G . ATT . . . . . . . A . . . . G . . A
blockSeqs : AGA . . . TT . AG T . . . . . . . . . . . . . . G . . C G . . C . TT . . . . . A . . . . G . . A
blockSeqs : TCA . . . GT . . T . . . . . . . . . . . . . . T . . T . . . A . A . . . . . . .
blockSeqs : AA . . . CA . . . . . . . . . . . . . . . . . G . . . . . . . A . .
blockSeqs : A . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CAG* T*** *** AT********** ***** A***** *** AG***********
originalCons : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--GTA-T--ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAAC--A----T---TTT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATAATAAAAAG-A--CGTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---AT-A-GA------A-TTAGAACCAAGG
finalCons : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATACAG-TAT---ACAG-CA-GTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANTCGTG-GGAACAT----------TT-TT-TCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-ATAATAAAAA-----CGTATTCAG-AA-CG-AAA-GTATG------GGGTTA---GTAAG---ATAG-----------TTAGAACCAAGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACAATGTACATCTTCTGTTACCAAAAAAAAAAAAAAAAATATATGCGATACAAAGTATACAAATTGGTATGTACATGC
Unaligned ( gi|18 ): TACATTTTCACCATCTTGTTTGGTTCAATCATACTTTGACAAATA
Unaligned ( gi|19 ): AACCAAGGAAGACATTATTTTTAGTTCAATTTCAATC
Alignments
lowQualScore : 11111111 222222 111 1111 1111 1111 222222222222222 11111 66666666666666666666 11 1 111 111 1111 4444444444 444444444444444
lowQualScore : 22222222 4 4 4 55 4 999999 4 66 4 55 4 3 3 3 55 222 4 4 1 4 777 1 1 0000 0000 1 66 0000 444444444444444 66 66666 6 6 11111111111111111111 33 0 777 8 6 6 111 4444 5 5 5 5 1111111111 1 99 888888888888888
lowQualScore : ........ . . . .. . ...... . .. . .. . . . . .. ... . . . . ... . . .... .... . .. .... ............... .. ..... . . .................... .. . ... . . . ... .... . . . . .......... . .. ...............
lowQualScore : 00000000 0 0 0 77 0 444444 4 11 0 55 0 6 6 6 00 777 0 0 9 4 888 4 4 6666 6666 0 99 6666 444444444444444 99 77777 7 7 11111111111111111111 88 0 555 0 7 7 777 2222 7 7 7 7 4444444444 5 22 777777777777777
consensus : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--A-GTATACAGCAGTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANT--CGTGGG----AA---C----A-----TTT--TTTCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-AAT---AAAAA----CGTATTCAG-AA-CG-AAA-GTATG----------GGGTTA--GTAAGAT---A---------GTTAGAACCAAGG
Reference ( family-6428 ) : CCACGGAACATNGA-----GT-AAC-AAA-ATTCGA-AATAC--A-GTATACAGCAGTCGTGA-TCTT--CA-TC--CGTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCGCC----GA----TTCTTTCCANT--CGTGGG----AA---C----A-----TTT--TTTCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTC--TT--TTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-AAT---AAAAA----CGTATTCAG-AA-CG-AAA-GTATG----------GGGTTA--GTAAGAT---A---------GTTAGAACCAAGG
gi|1 : ACGGAACATTTA-----GTGAAC-AAATAAGCGAGAATACTTA-ACATAGACAAGTC-TAA-TCTC--CA-TC--CATTA-CCGAA-CAAA-CTGTTGACGTC-A--CAATTA-TGC-AACAACCTTGAA---ATGC--GTGCT----GA----TTCTATTCACTTGTGTGGG----AAATGG----A-----CGT--TTTCAGCACTGA---CCTTGAAAGATAGATATGCGGATAGGAAAC-------------AGTTTGAACTTTTAA--TTCGACTTATTTGGGTGTACTAAATG-CATGAAT-AATGAAAAGAA----TGTAATCAGAAA-TGAAAA-GT-TG----------AGGTTAACGTAGAGT---ATGATCACACATTAGAACTAAG
gi|10 : tcatattttcatccactttgtactgggtcagtaaactaagaccaca-----GT-AAA-AAA-A---GA-AATAC--ACATGTACAGCAGTTGTCA-TCTT--TA-TC--CGTTA-AAGTC-TAAA-CACTTGACGTC-A--CA---aatggtaagacgtgcattttt
gi|12 : ttacagtgGCACGGACCTCCTTGAAA-----ACA---GGAT-TGAAATT
gi|13 : T-ATCAGT---AAAAG----CGTATTCAG-AA-CG-AAA-GTATGAGTTACATGTAGGTGA--ATAAGAT---A----------TTAGAACCAAGtcaataatttaacacatataaacaaatttttaaattaaacaatggt
gi|14 : tcaatga-TC--TGTTA-CAATG-AAAA-CATTTGATGTC-A--CA---A-TGC-AGTGGCCTTG-A---Aaa
gi|15 : ccagggaacaatgaaatacacggcagG-AA-CG-AAA-GTATG----------AGGTCA--TTAAGAT---A----------TTAGAACCAAGG
gi|16 : CCACGGAACATGGATCGGAGT-AAC-AAA-ATTCGA-AATAC--A-GTgagacattttttacttcaatttcaat
gi|16 : aTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-caaaacatttgacgtcacaatgc
gi|17 : accacggaacatggatcggagtaacaaaattcgaaaCCACGGAACATGGA-----GT-AAC-AAA-ATTCGA-AATA-------ATACAGCAGTTGTGA-TCAC--CA-TC--
gi|2 : tgaCACGGAACATTGA-----GT-AAT-AAA-ATTCGA-AATAC--ATGTATACAGCAGTCGTAA-TCTT--CA-TC--CTTTA-CAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AACAACCTTG-A---ATGCCAGCGCC----GA----TTTCTTTCACT--TGTGGG----AA---C----A-----------TTCAGCACGGACTT
gi|2 : AAT--CATT-GA-AAT---AAAAA----CGTATTCAG-AA-CG-AAA-GTATGAGCTAT----AGGTGA--ATAAGAT---A----------TTAGAACCAAGGgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcaatcattgaaataaaaacgtattcagaacgaaagtatgagctataggtgaataagatattagaaccaaggaaaacactattttttttattttaattta
gi|3 : cacggaacattgagtaataaaattcgaaatacatgtatacagcagtcgtaatcttcatcctttacagtcaaaacatttgacgtcacaatgcaacaaccttgaatgccagcgccgatttctttcacttgtgggaacattcagcacggacttgacttgcactgatgcattcaagattacactaaaatattaaaatcaggggtgggtgggggtgggtgggtgtattttaaaattcaatttcATAAA-----GT-AACCAAA-ATTCAA-A---------TATACAGCAATCGTGAATCTTACCA-TTTACGTTA-CAGTC-AAAATCATTTGACGTC-A--CA---AATGC-AACGACCTTG-A---AC-TCAGCGCC----GA----TTCTCTTCAAT--CGTGAG----AA---C----AAACATTTT--TTCCAGCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGA-----------------------ACTTTCAATTTCC-ACTTATT---GTACAAATAATGCCATT-AT-AAT---AAAAAAAATGGTATTCAG-AACCG-AAACGTAGT----------GGGTTA--GTAAGAT---A---------G-TAGAACCAAGaaaacactattttttttattttaattta
gi|4 : CCACGGAACATAGA-----GT-AAC-AAA-ATTCGA-AATACC-G-GTATACAGCAGTCGTGA-TCTT--CA-TA--TGTTA-CAGTCCAAAA-CATTTGACGTC-A--CA---A-TGC-AACGACCTTG-A---ATGCCAGCACC----GA----TTCTTTCCAAT--CGTGGG----AA---C----T-----TTC--TTTCATCACGGACCTCCTTGAAA-----ACAT-TGGAT-TGAAATTCTTTT--TTCTAGGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CTTT-AT-AAT---AAAAA----CATATTCAG-AA-CA-AAT-GTATG----------GGGTTA--GTAAGATAGAA---------GCTAGAACTAAGGagatgggacattattatttcactgttagtttcaattt
gi|5 : GAACATTCA-----GC-AAA-ACA-AT--GA-AATA-------A-ACAGTAGTCGTGA-TTTT--CA-TC--CGTTT-CAGAC-AAAA-CATTTGACGTC-ATGCA---A-TGC-ATC-------------TGCCAAC-TC----GAAAAGT-------AGT--CATGGG----GA---C----A------TT--TATCGGCACGGAtgg
gi|6 : aaaaaaaaaaaaaaaaacagaaaaaaaactgtcggactgctacacataaattatttaatgcgtcaccgacT--CGTGGG----AA---CGAACA-----TTT--TATCAACACGGACCTCCTTGAAA-----ACAT-TGAAT-TGGAATTC--TTAATTCTAAGTT--GACTTTCAA--TCC-ACTTATT---GTGCACATAATG-CATT-AT-GAT----AAAA----CGTATTCAG-AA-CG-AAA-GTATG----------GG
gi|7 : acgCCACGGAACATA-A-----GT-GAC-AAA-AGTCGA-AATA---A-GTtt
gi|7 : aAGTC-AAAA-CATTTGACGTC-A--CA---A-TGC-AATGACTTTG-A---ATG-------C----GA----TTCTTTCCACT--CGTGGA----CA---C----A-----TTTTCTTTCAGCA-AAACCTCTTTGAAA-----ACAT-TGGAT-TGAAATcaaaacatttgacgtcacaatgcaatgactttgaatgcgattctttccactcgtggacacattttctttcagcaaaacctctttgaaaacattggattgaaat
gi|8 : accacggaacataagtgacaaaagtcgaaataCACCAAACAT--A-----GT-GGC-AGA-ACATGA-AATAC--ATGTATACGTT--TCATGA-TTTC--CGCTC--TGTTAACAATC-AAAA-CATCTGACATCTA--AATTGA-TGCGAACTACA-TG-ATTCCTGCCATTGGCAATAGA----TTCTTTC
gi|9 : atGTGA-TCTT--CA-TA--CGTTA-CAGTC-AAAA-CATTAGACGTC-A--CA---A-TGC-GACGACCTTG-A---ATGCTAGCGCT----GA----TTCTTTCCTAT--CGTGGGAACAAA---C----A-----TTT--TTTCAGCACGGAaat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACAATGTACATCTTCTGTTACCAAAAAAAAAAAAAAAAATATATGCGATACAAAGTATACAAATTGGTATGTACATGC
Unaligned ( gi|18 ): TACATTTTCACCATCTTGTTTGGTTCAATCATACTTTGACAAATA
Unaligned ( gi|19 ): AACCAAGGAAGACATTATTTTTAGTTCAATTTCAATC