lowQualScore : 22222222222222222222222222222222222 11111
lowQualScore : 11 1 5555555555555555555555 1111111 22222 222 55555 11111 22 4444444444444444 1 1 3333 11111 111 111 22222222222222222222222222222222222 222 4444444 1111 3 111 00000
lowQualScore : 33 5 1 4 4 4 1 66 66 0000000000000000000000 5 55 1111111 4 88888 777 4 777 22222 77777 4 55 55 3 11 4 4 4 5555555555555555 1 5 6 1 0 6 1 0 2 7777 66666 111 999 8 3 00000000000000000000000000000000000 000 4444444 6 4444 6 6 3 6 888 2 00000 6
lowQualScore : .. . . . . . . .. .. ...................... . .. ....... . ..... ... . ... ..... ..... . .. .. . .. . . . ................ . . . . . . . . . .... ..... ... ... . . ................................... ... ....... . .... . . . . ... . ..... .
lowQualScore : 88 7 4 4 4 4 0 11 11 1111111111111111111111 8 00 4444444 0 00000 333 4 888 88888 22222 0 55 55 6 00 0 0 0 5555555555555555 0 2 7 7 5 7 3 3 5 0000 77777 777 000 0 2 66666666666666666666666666666666666 222 0000000 7 2222 7 7 3 7 333 5 00000 0
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AATTTA--CTGGC-CCTT-TTTN--ANGGAAAATGCGTC--GG-----T-A-T-A---ATACTCAT--GTTA-TT---CGAC---CCG---A-T-C--T--CTCA-AATT-TTTA-CA-GTATTTC--------CT--TCCCCCNAAA-ATTTTCCAAGCCC-CATTTTTTCTGTATTTTACCCCCCA-----AAGAAAACCCTTTTC--CGGG--GAAA-ACCTCCC-C-AT-TA---ATTTCTAG------AATCAGT-TTTTAGGAATGTTGTCTC--G---GT-ATATATA----TAC-TCATG-TTATTCG-A---CCGNTCTT-----CCTTACATT
Reference ( gi|1 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AATTT---CTAGC-CCTTATTTC--ACGGAAAATGCGTC--GG-----T-A-T-A---ATACTCATA-GTTA-TT---CG-----CCG---A-T-C--T--CTCA-AATT-TTTA-CA-GTATTCC--------CT--TCCCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAACACCCCA-----AAGAAAACCCTTTTT--CGGG--GAAA-ACCTCACTAAAT-TAAAAATTTCTAG---GAAAATCAAT-TTTTAGGAATGTTGTCT---G---GT-ATATATA----TAC-TCATG-TT-TTCG-A---CCGCTCTTTTTCCCTTTACATTT
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AATTTA--GTGGC-TTTTA---G--AAGG-AAATGCGTC--GG-----T-A-T-----ATACTCATA--TTA-TT---CGAC---CCGC--A-T-C--T--ATCA-A--T-ATTA-CA-GTA
gi|7 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AATT
gi|3 : TAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AATTT---CACTC-GCTT-TTTC--ATGGAAA-TGCGTC--GG-----T-A-TAA---ATACTCATG---TA-TTGAAC------CCG---C-T-T--T--ATTATTATT-TTTACCA-GTActtgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|5 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AATTT---
gi|7 : cactCATTTAT-TTCCG-TTAA-ATGTAAAATCG--C---ATTTGA-CT-GT-CCTTTTTTTTGAAGGAGAATGCG-C--GGATGTTT-T-T-T---ATACTCATG-GTTAGTT---TGAC---CCGC--A-T-C--T--CTCA-A--T-TTTA-CATGTATatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|12 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AATTTACGCTAAC-CTTT---TA--AAAGAAAATGCGTC--GG-----TAA-TAA---ATACTCAT
gi|6 : TAT-TTCCGGT-AATATGTAAATTCG--CTCAATTTA--CT-GC-CTTT---TC--ATGTAAA-TGCGTCTTGG-----T-A-T-A----TACTCATC--TTA-TT---CGAC---CCG---C-TTC--T--CTCA-A--T-TTTA-CA-GTATgtatatgacgacccgctc
gi|16 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaG-T-AA-ATGTAAAGTCG--C--AATT-----TAGTGCCTT-TTTG--A-AGAAAATGCGTC--G
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTT---TAGGG-CCTTTTCTC--ACGGAAATTGCGTC--G--------A-T-T---ATACTCAAT-GTTA-TT---CGACCCGCCA---A-T-TCTT--CTCA-A-TT-TTTA-CA-GTAATCC---------T--TCCCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTTAC-CCCCA-----AAG-AAACCCTGGTC--CGGGTAAAAA-ACCTCCCCCTAT-TA------TC-AG-----------AT-TTTT-GAAATGTTGCCTCTCG---GT-AT-TATATTATTACTTCATG-TTATTCG-A---aatgttgtctcgatattat
gi|15 : cgtTTTT--AGAGGAAATGCGTC--GG-----TAA-T-A---TAACTCAT--GTTA-TT---CGACA--CCGCGCA-T-C--T--AACT-AA-T-TTTA-CA-acc
gi|4 : atttaacggcctGGAAACTTCGTC--TG-----T-A-T-ATATATATTCCT--GTTA-TT---CG-----Ctt
gi|17 : actgcgtctgtatatatagttctgttattcgcaccagtgcgaattagtatcgcactattttcatttataaatgccaaattctttaaaatacccccaaaacattccaagccccattttttatgtactctcccccaaagaaaacccttttcccgagaagtcttcccttctagaaaattttagcttgaaattAAATGCGTC--GG-----T-A-T-----ATACTCTTATGTTA-TA---CAAT---CCG---CTT-C--T--CTCA-acc
gi|8 : gTGCCTC--GG-----T-AAT-ATTTATACTCAT--GTTA-TT---CGATAC-CCG---A-T-C--TTCCTTA-CATT-
gi|8 : acccgctatctccaaattttacagtatatccttcccccaagcattttccaagccctcatattcttattttgctccccaaagaaaacccgtttccgggcgaaaacctcccgcgcttattatctgtattttagaatgt---A-T-C--T--C-CA-AATT-TT-A-CA-GTATATC--------CT--TCCCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGCTCCCCA-----AAGAAAACCCGTTTC--CGGGC-GAAA-ACCTCCCGCGCT-T----ATT------------ATCTGTATTTTA-GAATGTTGCCTC--G---GTAATATTTA----TAC-TCATG-TTATTCG-ATACCCGATCTT-----CCTTACATT
gi|13 : acccgct---A-T-C--T--CTCA-A--T-TTTA-CA-GTATTTA--------CT--TACCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTAC-CCCCA-----AAGAAAACCCTTTTC--CGGG--
gi|4 : gcCA-AATTCTTTA-AA-ATA------------------CCCCCAAA-ACATTCCAAGCCC-CATTTTTTATGTACTC--TCCCCCA-----AAGAAAACCCTTTTC--CCGA--GAAG-TCTTCCCT---TCTAGAAAATTTTAGCTTGAAA---------TTGGAAACTTCGTCT-------GT-ATATATA----TAT-TCCTG-TTATTCGCA---CC
gi|11 : actgcgtctgtatatatagttctgttattcgcaccagtgcgaattagtatcgcactattttcatttataaatgcTCA-CA-GTATTTCTAGTTTAGCTAGTTCCCCCAAA-AATACCC-AGCCC-CATTTTA-CTGTATTTTACCCCCCCCCCCCAAGAAAACCCTTTTC--CGG
gi|9 : tacT--TCACCCTAAACATTC----AGCCC-C--TTTTTCTGTATTGAGC-CCCCA-----AAGAAAACCCTATTTACCGGG----AA-AC-------AAT-TCCCGTTTTTT--------AATCAAC-TTTTA-GAATGTTGTCA---GCCCGT-ATATATA-----AC-TCATGATA-TTCG-A---C
gi|14 : atcgtactatttgattatttcttgtattatcattaataataAAAACCCTTTTC--CGGG--GGAATACCTCCC---------------CTAT------AATCAGA-TTTTAG-AATGTTCTCTC--G---GT-ACATATA----TAC-TCATG-TTATTCG-A---CC
gi|19 : -ACATATA----TAC-TCATG-TTATTCG-AC--CCGCTCcg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TGTATATGTATGTATACTCGTATTATTTGCAGTGCAGACTAGTTTTAGCCTTTGAAAATATCCTATATGATCCCCAAAGACATACTAAACCCCATTTTTCAATATTCTTCAATTCCCAAAAAGAAACCGCCTGTCCTGGGAATGCTTCCCTTTCAGATAATTTAGCTTG
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 11 222222222 1111111 111 333333333 222 222222222222222222222 11111 11111 11111 11 1111111111111111111111111111 11 1111 11 1111 111 55555
lowQualScore : 11 5 8 4 4 4 55 55 3 4 333333333 4 1 11 3 55 1111111 888 55 4 8 4 4 4 3 3 7777 666666666 44 3 555 7777 3 3 888888888888888888888 22222 1 5 0 3 0 5 66 0 88888 22222 4 4 4 11 888 0000000000000000000000000000 11 4444 00 99 9999 5 2222 5 5 555 1 00000
lowQualScore : .. . . . . . .. .. . . ......... . . .. . .. ....... ... .. . . . . . . . .... ......... .. . ... .... . . ..................... ..... . . . . . . .. . ..... ..... . . . .. ... ............................ .. .... .. .. .... . .... . . ... . .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 444444444 4 0 99 4 00 4444444 000 55 0 0 0 0 0 6 6 7777 999999999 66 6 000 7777 6 6 000000000000000000000 55555 0 0 8 4 8 0 66 9 55555 55555 4 4 4 99 333 0000000000000000000000000000 33 2222 33 22 3333 7 1111 7 7 777 0 00000
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--A-----TC--TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TTC-----CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTT---ACCCCCCA-----AAGAAAACC-CT-TTT-CCGGG--GAA-A-ACCTCCC-C--GTT----ATTTCTA----AA----TCAGN-TT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ACTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CG---A-----TC--TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TTC-----CCCCNAAA-ATTTTCCAAGCCC-CATTTTTTCTGTATTTT---ACCCCCCA-----AAGAAAACC-CT-TTT-CCGGG--GAA-A-ACCTCCC-C--ATT---AATTTCTAG---AA----TCAGT-TT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGNTCTT-----CCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---A-----TC--TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TTC-----CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTA---ACACCCCA-----AAGAAAACC-CT-TTT-TCGGG--GAA-A-ACCTCAC-TAAATTAAAAATTTCTAGGAAAA----TCAAT-TT----TTAGGAATGTTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -----CCCCAAAG-ACATACTAAACCC-CAT-TTTTCAATATTCTTCAATTCCCAA-----AAAGAAACCGCC-TGT-CCTGG--GAA-T-GCTTCCC-t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTTC-----CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTT---ACCCCCCCCCCCCAAGAAAACC-CT-TTT-CCGGtttcagataatttagcttg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CG---C-----TC--
gi|13 : ---A-----TC--TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TTA-----CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTT---A-CCCCCA-----AAGAAAACC-CT-TTT-CCGGG--
gi|14 : gcAAAACC-CT-TTT-CCGGG--GGA-ATACCTCCC-C--------------TAT---AA----TCAGA-TT----TTAG-AATGTTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACAC----CGCGCA-----TC--TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT---ATACTCTTA-T-GT-TA-TA-CA-AT-C----CG---CT----TC--TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAA-----TTCTTCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TTC-----CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTT---A-CCCCCA-----AAG-AAACC-CT-GGT-CCGGGTAAAA-A-ACCTCCC-C--CT-----ATT---------A----TCAGA-TT----TTTGAAATGTTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CG---C-----TT--TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCG---AATTAGTA--TCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATACCCCCAAA-ACATTCCAAGCCC-CATTTTTTATGTACTCT-----CCCCCA-----AAGAAAACC-CT-TTT-CCCGA--GAA-G-TCTTCCC-------------TTCTAG---AAAATTTTAGC-TTGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--A-----TC--TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CG---CT----TC--TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--A-----TC--TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-A-----TC--TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TTC-----CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTT---GCTCCCCA-----AAGAAAACC-CG-TTT-CCGGGC-GAA-A-ACCTCCCGC--GCT---TATT---------A----TCTGTATT----TTA-GAATGTTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TTC-----ACCCTAAACATTC----AGCCC-C--TTTTTCTGTA-TTG---AGCCCCCA-----AAGAAAACC-CTATTTACCGGG--AAACA-A--TTCC-C--GTT-----TTTT------AA----TCAAC-TT----TTA-GAATGTTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 2222 1111111 1111 1111 1111 222 222222222222222222222 111111 11 11111 11111 11 000000000000000000000000000000000 1111 11 1111 111 22222
lowQualScore : 11 5 8 4 4 4 55 55 3 4 33 3 2222 4 1 11 3 55 1111111 6666 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 66 0 88888 22222 4 4 4 11 888 333333333333333333333333333333333 66 2222 00 99 9999 5 2222 5 5 555 66666
lowQualScore : .. . . . . . .. .. . . .. . .... . . .. . .. ....... .... .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . .. . ..... ..... . . . .. ... ................................. .. .... .. .. .... . .... . . ... .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 33 9 6666 4 0 99 4 00 4444444 5555 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 66 9 55555 55555 4 4 4 99 333 999999999999999999999999999999999 77 1111 33 22 3333 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTT---ACCCCCCA-----AAGAAAACC-CT-TTT-CCGGG--GAA-A-ACCTCCC-C----TT----ATTTC---T----AAA-----TCAG-NTT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTT---ACCCCCCA-----AAGAAAACC-CT-TTT-CCGGG--GAA-A-ACCTCCC-C--G-TT----ATTTC---T----AAA-----TCAG-NTT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTA---ACACCCCA-----AAGAAAACC-CT-TTT-TCGGG--GAA-A-ACCTCAC-TAAA-TTAAAAATTTC---TAGGAAAA-----TCAA-TTT----TTAGGAATGTTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CAT-TTTTCAATATTCTTCAATTCCCAA-----AAAGAAACCGCC-TGT-CCTGG--GAA-T-GCTTCCC-------------TTTCAGAT----AAT-----TTAG-CTT----t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTT---ACCCCCCCCCCCCAAGAAAACC-CT-TTT-CCGGg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTT---A-CCCCCA-----AAGAAAACC-CT-TTT-CCGGG--tc
gi|14 : AAAACC-CT-TTT-CCGGG--GGA-ATACCTCCC-C-----T----AT------------AA-----TCAG-ATT----TTAG-AATGTTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TACTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTT---A-CCCCCA-----AAG-AAACC-CT-GGT-CCGGGTAAAA-A-ACCTCCC-C----CT----ATT------------A-----TCAG-ATT----TTTGAAATGTTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT-----CCCCCA-----AAGAAAACC-CT-TTT-CCCGA--GAA-G-TCTTCCC--------------TTC---T----AGAAAATTTTAG-CTTGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTT---GCTCCCCA-----AAGAAAACC-CG-TTT-CCGGGC-GAA-A-ACCTCCCGC--GCTT----ATT------------A-----TCTGTATT----TTA-GAATGTTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTG---AGCCCCCA-----AAGAAAACC-CTATTTACCGGG--AAACA-A--TTCC-C--G-TT----TTTT----------AA-----TCAA-CTT----TTA-GAATGTTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 11 2222 1111111 1111 1111 1111 222 222222222222222222222 111111 11 222222 11111 11 8888888888888888888888888888888 1111 11 1111 111 22222
lowQualScore : 11 5 8 4 4 4 55 55 3 4 33 3 2222 4 1 11 3 55 1111111 6666 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 6 3 0 111111 22222 4 4 11 66 8888888888888888888888888888888 77 4444 00 99 9999 5 2222 5 5 555 66666
lowQualScore : .. . . . . . .. .. . . .. . .... . . .. . .. ....... .... .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . . . . ...... ..... . . .. .. ............................... .. .... .. .. .... . .... . . ... .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 33 9 6666 4 0 99 4 00 4444444 5555 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 2 2 9 666666 55555 4 4 99 00 4444444444444444444444444444444 77 2222 33 22 3333 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATTT-------AA-----TCAG-NTT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATTTCT----AAA-----TCAG-NTT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAAC----ACCCCA-----AAGAAAACCCT-TTT-TCGGG--GAAA-ACCTCAC---TAAATTAAAAATTTCTAGGAAAA-----TCAA-TTT----TTAGGAATGTTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CATTTTT-CAATATTCTTCAATTCCCAAA-----AAGAAACCGCC-TGT-CCTGG--GAAT-GCTTCCC---T---TT----t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTTAC----CCCCCCCCCCCAAGAAAACCCT-TTT-CCGGcagataatttagcttg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTA-----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--tc
gi|14 : AAAACCCT-TTT-CCGGG--GGAATACCTCCC---C---T-----AT---------AA-----TCAG-ATT----TTAG-AATGTTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TACTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTTA-----CCCCCA-----AAG-AAACCCT-GGT-CCGGGTAAAAA-ACCTCCC---C---CT----ATT---------A-----TCAG-ATT----TTTGAAATGTTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT------CCCCCA-----AAGAAAACCCT-TTT-CCCGA--GAAG-TCTTCCC---------------TTCT----AGAAAATTTTAG-CTTGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGC----TCCCCA-----AAGAAAACCCG-TTT-CCGGGC-GAAA-ACCTCCCGCGC---TT----ATT---------A-----TCTGTATT----TTA-GAATGTTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTGAG----CCCCCA-----AAGAAAACCCTATTTACCGGG--AAAC-AATTCCC---G---TT----TTTT-------AA-----TCAA-CTT----TTA-GAATGTTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 11 2222 1111111 1111 1111 1111 222 222222222222222222222 111111 11 222222 11111 11 555555555555555555555555555555 1111 11 1111 111 22222
lowQualScore : 11 5 8 4 4 4 55 55 3 4 33 3 2222 4 1 11 3 55 1111111 6666 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 6 3 0 111111 22222 4 4 11 0 5 666666666666666666666666666666 77 4444 00 99 9999 5 2222 5 5 555 66666
lowQualScore : .. . . . . . .. .. . . .. . .... . . .. . .. ....... .... .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . . . . ...... ..... . . .. . . .............................. .. .... .. .. .... . .... . . ... .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 33 9 6666 4 0 99 4 00 4444444 5555 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 2 2 9 666666 55555 4 4 99 1 7 444444444444444444444444444444 77 2222 33 22 3333 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT--------AA----TCAG-NTT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATTT-------AA----TCAG-NTT----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAAC----ACCCCA-----AAGAAAACCCT-TTT-TCGGG--GAAA-ACCTCAC---TAAATTAAAAATTTCTAGGAAAA----TCAA-TTT----TTAGGAATGTTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CATTTTT-CAATATTCTTCAATTCCCAAA-----AAGAAACCGCC-TGT-CCTGG--GAAT-GCTTCCC---T---TT----t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTTAC----CCCCCCCCCCCAAGAAAACCCT-TTT-CCGGcagataatttagcttg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTA-----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--tc
gi|14 : AAAACCCT-TTT-CCGGG--GGAATACCTCCC---C---T-----AT---------AA----TCAG-ATT----TTAG-AATGTTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TACTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTTA-----CCCCCA-----AAG-AAACCCT-GGT-CCGGGTAAAAA-ACCTCCC---C---CT----ATT---------A----TCAG-ATT----TTTGAAATGTTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT------CCCCCA-----AAGAAAACCCT-TTT-CCCGA--G-AA-GTCTTCC---C---TT----CTAG-------AAAATTTTAG-CTTGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGC----TCCCCA-----AAGAAAACCCG-TTT-CCGGGC-GAAA-ACCTCCCGCGC---TT----ATT---------A----TCTGTATT----TTA-GAATGTTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTGAG----CCCCCA-----AAGAAAACCCTATTTACCGGG--AAAC-AATTCCC---G---TT----TTTT-------AA----TCAA-CTT----TTA-GAATGTTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 11 2222 1111111 1111 1111 1111 222 222222222222222222222 111111 11 222222 11111 11 777777777777777777777777777777 1111 1111 111 22222
lowQualScore : 11 5 8 4 4 4 55 55 3 4 33 3 2222 4 1 11 3 55 1111111 6666 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 6 3 0 111111 22222 4 4 11 66 555555555555555555555555555555 66 77 2222 88 99 9999 5 2222 5 5 555 66666
lowQualScore : .. . . . . . .. .. . . .. . .... . . .. . .. ....... .... .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . . . . ...... ..... . . .. .. .............................. .. .. .... .. .. .... . .... . . ... .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 33 9 6666 4 0 99 4 00 4444444 5555 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 2 2 9 666666 55555 4 4 99 00 666666666666666666666666666666 77 99 1111 00 22 3333 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---T-T----ATT--------AA---TCAG-AT--T----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---T-T----ATT--------AA---TCAG-NT--T----TTAGGAATGTTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAAC----ACCCCA-----AAGAAAACCCT-TTT-TCGGG--GAAA-ACCTCAC---TAAAT-TAAAAATTTCTAGGAAAA---TCAA-TT--T----TTAGGAATGTTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CATTTTT-CAATATTCTTCAATTCCCAAA-----AAGAAACCGCC-TGT-CCTGG--GAAT-GCTTCCC---T---T----------------------TCAG-ATAAT----TTAGt
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTTAC----CCCCCCCCCCCAAGAAAACCCT-TTT-CCGGcttg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTA-----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--tc
gi|14 : AAAACCCT-TTT-CCGGG--GGAATACCTCCC---C---T------AT---------AA---TCAG-AT--T----TTAG-AATGTTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TACTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTTA-----CCCCCA-----AAG-AAACCCT-GGT-CCGGGTAAAAA-ACCTCCC---C---C-T----ATT---------A---TCAG-AT--T----TTTGAAATGTTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT------CCCCCA-----AAGAAAACCCT-TTT-CCCGA--GAAG-TCTTCCC---T---TCT----AGA--------AAATTTTAG-CT--TGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGC----TCCCCA-----AAGAAAACCCG-TTT-CCGGGC-GAAA-ACCTCCCGCGC---T-T----ATT---------A---TCTGTAT--T----TTA-GAATGTTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTGAG----CCCCCA-----AAGAAAACCCTATTTACCGGG--AAAC-AATTCCCG--T---T-T----TTT--------AA---TCAA-CT--T----TTA-GAATGTTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 11 2222 1111111 1111 1111 1111 222 222222222222222222222 111111 11 222222 11111 11 6666666666666666666666666 11111 111111 1111 111 22222
lowQualScore : 11 5 8 4 4 4 55 55 3 4 33 3 2222 4 1 11 3 55 1111111 6666 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 6 3 0 111111 22222 4 4 11 0 5 5555555555555555555555555 5 77 55555 99 999999 99 9999 5 2222 5 5 555 66666
lowQualScore : .. . . . . . .. .. . . .. . .... . . .. . .. ....... .... .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . . . . ...... ..... . . .. . . ......................... . .. ..... .. ...... .. .... . .... . . ... .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 33 9 6666 4 0 99 4 00 4444444 5555 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 2 2 9 666666 55555 4 4 99 1 7 3333333333333333333333333 7 99 33333 22 222222 22 3333 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT--------AATCAG-AT--TTTAG---GAA--TG------TTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT--------AATCAG-AT--TTTAG---GAA--TG------TTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAAC----ACCCCA-----AAGAAAACCCT-TTT-TCGGG--GAAA-ACCTCAC---TAAATTAAAAATTTCTAGGAAAATCAA-TT--TTTAG---GAA--TG------TTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CATTTTT-CAATATTCTTCAATTCCCAAA-----AAGAAACCGCC-TGT-CCTGG--GAAT-GCTTCCC---T---T------------------TCAG-ATAATTTAG---t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTTAC----CCCCCCCCCCCAAGAAAACCCT-TTT-CCGGcttg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTA-----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--tc
gi|14 : AAAACCCT-TTT-CCGGG--GGAATACCTCCC---C---T-----AT---------AATCAG-AT--TTTAG----AA--TG------TTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TACTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTTA-----CCCCCA-----AAG-AAACCCT-GGT-CCGGGTAAAAA-ACCTCCC---C---CT----ATT---------ATCAG-AT--TTTTG---AAA--TG------TTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT------CCCCCA-----AAGAAAACCCT-TTT-CCCGA--G-AA-GTCTTCC---C---TT----CTA--------GA--AA-AT--TTTAGCTTGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGC----TCCCCA-----AAGAAAACCCG-TTT-CCGGGC-GAAA-ACCTCCCGCGC---TT----ATT---------ATCTGTAT--TTTA----GAA--TG------TTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTGAG----CCCCCA-----AAGAAAACCCTATTTACCGGG--AAAC-AATTCCCG--T---TT----TTT--------AATCAA-CT--TTTA----GAA--TG------TTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 11 2222 1111111 1111 1111 1111 222 222222222222222222222 111111 11 222222 11111 11 6666666666666666666666666 11111 111111 1111 111 22222
lowQualScore : 11 5 8 4 4 4 55 55 3 4 33 3 2222 4 1 11 3 55 1111111 6666 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 6 3 0 111111 22222 4 4 11 0 5 5555555555555555555555555 5 77 55555 99 999999 99 9999 5 2222 5 5 555 66666
lowQualScore : .. . . . . . .. .. . . .. . .... . . .. . .. ....... .... .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . . . . ...... ..... . . .. . . ......................... . .. ..... .. ...... .. .... . .... . . ... .....
lowQualScore : 00 0 8 0 0 0 55 55 6 0 33 9 6666 4 0 99 4 00 4444444 5555 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 2 2 9 666666 55555 4 4 99 1 7 3333333333333333333333333 7 99 33333 22 222222 22 3333 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT--------AATCAG-AT--TTTAG---GAA--TG------TTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT--------AATCAG-AT--TTTAG---GAA--TG------TTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT--CTAGCC--CTTATTTCACGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAAC----ACCCCA-----AAGAAAACCCT-TTT-TCGGG--GAAA-ACCTCAC---TAAATTAAAAATTTCTAGGAAAATCAA-TT--TTTAG---GAA--TG------TTG--TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CATTTTT-CAATATTCTTCAATTCCCAAA-----AAGAAACCGCC-TGT-CCTGG--GAAT-GCTTCCC---T---T------------------TCAG-ATAATTTAG---t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTTAC----CCCCCCCCCCCAAGAAAACCCT-TTT-CCGGcttg
gi|12 : tacATTCAT-TTC-G-T-AA-GTGCCAAATCGAGC--AA-TTT-AC--GCTAACCT-TTTAAAAGAAAATGCGTC--GG-----TAATAA-ATACTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTA-----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--tc
gi|14 : AAAACCCT-TTT-CCGGG--GGAATACCTCCC---C---T-----AT---------AATCAG-AT--TTTAG----AA--TG------TTC--TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AACGGCC----T-TTTTAGAGGAAATGCGTC--GG-----TAAT-A-TAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AGTG--C--CTT-TTTGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TACTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG-GGCC--TTT-TCTCACGGAAATTGCGTC--G--------AT-T-ATACTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CA-TTTTTCTGTATTTTA-----CCCCCA-----AAG-AAACCCT-GGT-CCGGGTAAAAA-ACCTCCC---C---CT----ATT---------ATCAG-AT--TTTTG---AAA--TG------TTGCCTC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAAATGGCGATTATATTACG-T-AA-A-GTAAAATCG--C--AA-TTTCACTCGC----TT-TTTCATGGAAA-TGCGTC--GG-----T-ATAA-ATACTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAacc
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATAGTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT------CCCCCA-----AAGAAAACCCT-TTT-CCCGA--G-AA-GTCTTCC---C---TT----CTA--------GA--AA-AT--TTTAGCTTGAAATTGGAAACTTCG--TC--T--GT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TCC-G-T-AA-TTGTAAAATCG--C--AA-TTT-AGTG
gi|5 : ATATG--GCATTTAT-TCC-G-T-AA-ATGTAAAATCG--C--AA-TTT-AGTGGC-----T-TTTAGAAGGAAATGCGTC--GG-----T-AT---ATACTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TTCCGGT-AATATGTAAATTCG--CTCAA-TTT-ACTG-----CCT-TTTCATGTAAA-TGCGTCTTGG-----T-AT-A--TACTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TTCCG-TTAA-ATGTAAAATCG--C--AT-TTG-ACTGTCCTTTTT-TTTGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATACTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGC----TCCCCA-----AAGAAAACCCG-TTT-CCGGGC-GAAA-ACCTCCCGCGC---TT----ATT---------ATCTGTAT--TTTA----GAA--TG------TTG--CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTGAG----CCCCCA-----AAGAAAACCCTATTTACCGGG--AAAC-AATTCCCG--T---TT----TTT--------AATCAA-CT--TTTA----GAA--TG------TTG--TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
blockSeqs : TG A C G T T AG TC G C AC G TAAC . A AA A TT ATGTTT AAA TT A G A G A C A AGTG CAA AGTA T TAT CATT C T TTCTAGTTTAGCTAG AAAATA A C TA A T T T TCAATT CCCCC A A TA T GCGCTTATT T AA GCTTG AT GAAACT CC AGCC A TTAT T C TAC .
blockSeqs : . . C . . . . . . . GT G CTTT . T GA A . TA AAA . . . . . . . . CG TA CT . AT . . . GCCAAATTCT . . . TT C . T T AC . . . C . GTTTTTTA . . GA . . . TC . . . . C
blockSeqs : . . C . . . . . . . CT G CC . G CG A . TA ATA . . . . . . . . . A . . AT . . . TTAC . . . TT G . T T GC . . . . . CTTCTAG . . G . . . TC . . . . .
blockSeqs : . . C . . . . . . . GT G CT . C TG A . T AT . . . . . . . . . A . . A . . . ATCC . . . TT A . T T AG . . . . . CCTATT . . G . . . TC . . . . .
blockSeqs : . . . . . . . . . GT G C . C AA T . T TA . . . . . . . . . T . . T . . . TCC . . . C A . . T A . . . . . CTATA . . G . . . T . . . . .
blockSeqs : . . . . . . . . . CT T C . A TG A . T TA . . . . . . . . . A . . . . . . . . . . A . . . A . . . . . TT . . . . . . .
blockSeqs : . . . . . . . . . CT . . . C AG A . T A . . . . . . . . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C . . . G A . . T A . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . G . . . A . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : C*** AA** AT* CTTATT******************* G**** TC**
originalCons : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC--CTT-TTTNANGGAAAATGCGTC--GG-----T-AT-A-ATACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT--------AATCAG-AT--TTTAG---GAA--TG------TTG--TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
finalCons : ATAAA--GCATTTAT-TCCCG-T-AA-ATGTAAAATCG--C--AA-TTT-ANTGGCC---TT-TTTNANGGAAAATGCGTC--GG-----T-ATAA--TACTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-AAT-TTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCCCTTATT-------------------ATCAG-AT--TTTAG----AA--TG------TTG--TCTC--GGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT
Alignments
lowQualScore : 11 11111 1111 1111 1111 222 222222222222222222222 111111 11 222222 11111 11 5555555555555555555555555 111 222222 11 1111 111 22222
lowQualScore : 11 4 9999 6 3 3 3 55 55 3 3 666 2 777 55 4 1 1 8 55 00000 4 6666 4 55 4 8 4 4 4 3 3 2222 888 2222 3 555 7777 3 3 888888888888888888888 666666 5 5 11 4 5 0 77 0 111111 22222 4 4 11 0 5 9999999999999999999999999 5 77 5 5 111 888888 55 5 2222 5 5 555 66666
lowQualScore : .. . .... . . . . .. .. . . ... . ... .. . . . . .. ..... . .... . .. . . . . . . . .... ... .... . ... .... . . ..................... ...... . . .. . . . .. . ...... ..... . . .. . . ......................... . .. . . ... ...... .. . .... . . ... .....
lowQualScore : 00 4 4444 7 6 6 6 00 00 3 6 000 0 000 55 0 0 0 3 00 00000 0 5555 0 55 0 0 0 0 0 6 6 7777 111 7777 6 000 7777 6 6 000000000000000000000 444444 0 0 55 2 0 1 44 9 666666 55555 4 4 99 1 7 0000000000000000000000000 7 99 7 7 777 333333 88 7 1111 7 7 777 55555
consensus : ATAAA--GCATTTAT-TC----CCG-T-AA-ATGTAAAATCG--C--AA-TTT-AN--TGGCC---TTT--T-TNANGGAAAATGCGTC--GG-----T-AT-A-ATA-CTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT---------ATCAG-AT--TTTA-G-AATG---TTG------TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
Reference ( family-636 ) : ATAAA--GCATTTAT-TC----CCG-T-AA-ATGTAAAATCG--C--AA-TTT-AN--TGGCC---TTT--T-TNANGGAAAATGCGTC--GG-----T-AT-A-ATA-CTC--A-T-GT-TA-TT-CG-AC-C----CGC--ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TTCC-----------TT------C-CCCCAAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTTAC----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--GAAA-ACCTCCC---C---TT----ATT---------ATCAG-AT--TTTA-G-AATG---TTG------TC--TCGGT-ATATATA----TAC-TCATGTTATTCG-A---CCGCTCTTTTTCCCCTTACATT
gi|1 : ATAAA--GCATTTAT-TC----CCG-T-AA-ATGTAAAATCG--C--AA-TTT--C--TAGCC---CTTATT-TCACGGAAAATGCGTC--GG-----T-AT-A-ATA-CTC--A-TAGT-TA-TT-CG----C----CG---ATC----TCTCA-A-ATTTT----TA-CA-GTAT------TCCC-----------TT------C-CCCCCAAA-ATTTTCCGAGCCC-CATTTTTTCTGTATTTAAC----ACCCCA-----AAGAAAACCCT-TTT-TCGGG--GAAA-ACCTCAC---TAAATTAAAAATTTCTAGGAAAATCAA-TT--TTTAGG-AATG---TTG------TC--T-GGT-ATATATA----TAC-TCATGTT-TTCG-A---CCGCTCTTTTTCCCTTTACATT
gi|10 : -CCCCAAAG-ACATACTAAACCC-CATTTTT-CAATATTCTTCAATTCCCAAA-----AAGAAACCGCC-TGT-CCTGG--GAAT-GCTTCCC---T---T------------------TCAG-ATAATTTA-G-t
gi|11 : tgtatatgtatgtatactcgtattatttgcagtgcagactagttttagcctttgaaaatatcctatatgatT----CA-CA-GTAT------TTCTAGTTTAGCTAGTT------C-CCCCAAAA-ATA--CCCAGCCC-CATTTTA-CTGTATTTTAC----CCCCCCCCCCCAAGAAAACCCT-TTT-CCGGcttg
gi|12 : tacATTCAT-TT----C-G-T-AA-GTGCCAAATCGAGC--AA-TTT-ACGCTAACC---TTT--T--AAAAGAAAATGCGTC--GG-----TAATAA-ATA-CTC--A-T-GTATA-TGACG-AC-C----CGC--
gi|13 : GC--ATC----TCTCA-A---TTT----TA-CA-GTAT------TTAC-----------TT------A-CCCCAAAA-ATTTTCCGAGCCC-CA-TTTCTCTGTACTTTA-----CCCCCA-----AAGAAAACCCT-TTT-CCGGG--tc
gi|14 : AAAACCCT-TTT-CCGGG--GGAATACCTCCC---C----T----ATA---------ATCAG-AT--TTTA-G-AATG---TTC------TC--TCGGT-ACATATA----TAC-TCATGTTATTCG-A---CC
gi|15 : A-TTT-AA--CGGCC---TTT--T-TAGAGGAAA-TGCGTC--GG-----T-AA-T-ATAACTC--A-T-GT-TA-TT-CG-ACACCG--CGC--ATC----TAACT-A-A-TTT----TA-CA-cg
gi|16 : G-T-AA-ATGTAAAGTCG--C--AA-TTT-AG--T-GCC---TTT--T-TGAA-GAAAATGCGTC--Gtt
gi|17 : AAATGCGTC--GG-----T-AT-A--TA-CTCTTA-T-GT-TA-TA-CA-AT-C----CGC--TTC----TCTCA-aatgttgtctcgatattat
gi|19 : g-ACATATA----TAC-TCATGTTATTCG-AC--CCGCTC
gi|2 : -T-AA-ATGTAAA-TC---C--AAGTTT-AG---GGCC---TTT--TCTCACGGAAATTGCGTC--G--------AT-T-ATA-CTC--AAT-GT-TA-TT-CG-AC-C----CGCCAATTCT--TCTCA-A--TTTT----TA-CA-GTAA------T-CC-----------TT------C-CCCCAAAA-ATTTTCCAAGCCC-CATTTT-TCTGTATTTTA-----CCCCCA-----AAG-AAACCCT-GGT-CCGGGTAAAAA-ACCTCCC---C---CT----ATT---------ATCAG-AT--TTTT-GAAATG---TTGCC----TC--TCGGT-AT-TATATTATTACTTCATGTTATTCG-A---
gi|3 : cgtTAT-TCGTATCCG-C-AA--TTTAAAATCG--C--GA-TTT-AG--TTGCC---TTA--T-Tacc
gi|3 : TAAATGGCGATTATATT----ACG-T-AA-A-GTAAAATCG--C--AA-TTTCAC--TCGC----TTT--T-TCATGGAAA-TGCGTC--GG-----T-ATAA-ATA-CTC--A-T-G--TA-TT-GA-AC-C----CGC---TT----TATTATT-ATTTT----TACCA-GTAcagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattatttaaatggcgattatattacgtaaagtaaaatcgcaatttcactcgctttttcatggaaatgcgtcggtataaatactcatgtattgaacccgctttattattatttttaccagta
gi|4 : aataaggcaactaaatcgcgattttaaattgcggatacgaatacagataggagaaatttatacctgaataacttcgttggacacaaaattattccattactgcgataatctacattattTGCGTC--TG-----T-AT-ATATA-GTT--C-T-GT-TA-TT-CGCAC-CAGTGCGA--ATTAGTATCGCA-CTATTTTCATTTA-TA-A-ATGCCAAATTCT-----------TTAAAATAC-CCCCAAAACATT--CCAAGCCC-CATTTTTTATGTACTCT------CCCCCA-----AAGAAAACCCT-TTT-CCCGA--G-AA-GTCTTCC---C---TT-----CT---------AGAAA-AT--TTTA-G-CTTGAAATTGGAAACTTCG-TCTGT-ATATATA----TAT-TCCTGTTATTCGCA---CC
gi|5 : acA--GCATTTAT-TC----C-G-T-AA-TTGTAAAATCG--C--AA-TTT-AG--TG
gi|5 : ATATG--GCATTTAT-TC----C-G-T-AA-ATGTAAAATCG--C--AA-TTT-AG--TGGC-----TT--T-TAGAAGGAAATGCGTC--GG-----T-AT---ATA-CTC--A-T-AT-TA-TT-CG-AC-C----CGC--ATC----TATCA-A---TAT----TA-CA-GTAatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttatatggcatttattccgtaaatgtaaaatcgcaatttagtggcttttagaaggaaatgcgtcggtatatactcatattattcgacccgcatctatcaatattacagta
gi|6 : cactaaattgcgattttacaattacggaataaatgctatttttgcagatacgataggagacctgaataaatattcagattttccttcttggactttaattcactgcgttcgtacattatttTAT-TT----CCGGT-AATATGTAAATTCG--CTCAA-TTT-AC--TG--C---CTT--T-TCATGTAAA-TGCGTCTTGG-----T-AT-A--TA-CTC--A-T-CT-TA-TT-CG-AC-C----CGC--TTC----TCTCA-A---TTT----TA-CA-GTAT------
gi|7 : caaaatcgcgattttacaattgcgatacgatacgatagagaacatttagacctgataaattctttggacaaatttaattaactgcgtttcatacattatttaaatgaATAAA--GCATTTAT-TC----CCG-T-AA-ATGTAAAATCG--C--AA-TT
gi|7 : CATTTAT-TT----CCG-TTAA-ATGTAAAATCG--C--AT-TTG-AC--TGTCCTTTTTT--T-TGAAGGAGAATGCG-C--GGATGTTT-TT-T-ATA-CTC--A-TGGT-TAGTT-TG-AC-C----CGC--ATC----TCTCA-A---TTT----TA-CATGTAT------cttgcaatacgtttcacggaatatgtaattcactgcgtttcgtaccatttatttccgttaaatgtaaaatcgcatttgactgtccttttttttgaaggagaatgcgcggatgttttttatactcatggttagtttgacccgcatctctcaattttacatgtat
gi|8 : aattgcgattttacatttacgggaataaatgctttatcttgcaatacgtttcacggaatatgtaattcactgcgtttcgtac-AC-C----CGCT-ATC----TC-CA-A-ATTTT-----A-CA-GTAT------ATCC-----------TT------C-CCCCAAGC-ATTTTCCAAGCCCTCATATTCT---TATTTTGC----TCCCCA-----AAGAAAACCCG-TTT-CCGGGC-GAAA-ACCTCCCGCGC---TT----ATT---------ATCTGTAT--TTTA-G-AATG---TTG------CC--TCGGTAATATTTA----TAC-TCATGTTATTCG-ATACCCGATCTT-----CCTTACATT
gi|9 : -----------TT------CACCCTAAAC-ATTC----AGCCC-C--TTTTTCTGTA-TTGAG----CCCCCA-----AAGAAAACCCTATTTACCGGG--AAAC-AATTCCC---G---TT----TTTTA-------ATCAA-CT--TTTA-G-AATG---TTG------TCAGCCCGT-ATATATA-----AC-TCATGATATTCG-A---C
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTTTACTCACAGTATTTCTAGTTTGGCT