lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11111111 66666666 333333333 111 111 111 4444444444444444444444444444444444 111 22222222222222222 11 111111 2222 888888888888888888888888888888888888888888 11 222 333 1 111 2 1 3333333 000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1 1 1 111 888888888888888888888888888888888 11111111 2 111111 2222222 11111 111 111 111 11 111111 1 11111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 222222 1 33 111 1 22222 88888888 111 1 2222 8888888888888888888888888888888 1 22 1 55555555 111 1 444444444 1 1 1
lowQualScore : 2 44444444 22222222 0 9 333333333 2 3 3 000 3 8 4 888888 4 1 4 4 1 88888 0 8 555 77 5 77 000 8888888888888888888888888888888888 6 000 1 4 1 22222222222222222 5 11 1 999999 99 99 3333 6 6 99 6 444444444444444444444444444444444444444444 99 3 6 6 88 8 777 55 666 3 0 222 9 2 2 2 0 5555555 8 3 999999999999999999999999999999999999999999999999999999999999999999999999999999 77 0 2 0 0 000 444444444444444444444444444444444 11111111 99 99 0 0 5 222222 6666666 88888 000 4 66 777 999 2 4 55 66 4 222222 00 0 33333 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555555 999999 2 3 9 0 33 666 0 77777 3 7 33333333 777 3 3 3 9999 6 3333333333333333333333333333333 2 0 77 3 7 4 66666666 999 3 777777777 5 5 6 6 7
lowQualScore : . ........ ........ . . ......... . . . ... . . . ...... . . . . . ..... . . ... .. . .. ... .................................. . ... . . . ................. . .. . ...... .. .. .... . . .. . .......................................... .. . . . .. . ... .. ... . . ... . . . . . ....... . . .............................................................................. .. . . . . ... ................................. ........ .. .. . . . ...... ....... ..... ... . .. ... ... . . .. .. . ...... .. . ..... ................................................................................................................................ ...... ...... . . . . .. ... . ..... . . ........ ... . . . .... . ............................... . . .. . . . ........ ... . ......... . . . . .
lowQualScore : 5 55555555 00000000 4 1 000000000 8 6 3 444 6 0 0 333333 4 0 4 4 1 77777 2 9 777 99 7 99 000 4444444444444444444444444444444444 7 000 4 9 7 33333333333333333 7 88 7 222222 22 22 5555 7 7 22 7 222222222222222222222222222222222222222222 22 5 7 7 00 0 888 55 555 2 0 222 0 8 5 2 0 2222222 0 2 222222222222222222222222222222222222222222222222222222222222222222222222222222 00 0 2 0 0 888 555555555555555555555555555555555 99999999 22 22 5 1 7 333333 7777777 33333 000 4 11 000 999 2 4 99 11 4 888888 99 1 66666 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555555 000000 2 2 0 0 88 222 0 77777 7 3 77777777 777 3 2 2 8888 0 0000000000000000000000000000000 5 0 55 3 3 0 55555555 000 3 777777777 0 0 0 0 0
consensus : NNGTGTAAAAGGCAATA--------CGAAGAAACGAGACACCAGATACGAGAAACAGA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTA-TGA-AGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--ACA---TT--ATGA-----GCT-CA-ACATAAAA-TAG--C-AA-TTT---CAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA-GACAT-TATT-TAA---------A--T-AAAAA----T-AA-----TGGT--GGA-ATCAC-ATT-ATCAA-CG-N-CATCTGCGTGGGGAAACCCAAAGTTTA-CAGAG-TCAGTATTTATGTAATNTTGGGTG-GT------GCGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A------CAT-TATTATTAT--CTATTACAGTGTATCTATAGTATTGTACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTGTAAAT-GAATA----------------CTGG-TG-CT--CATTTNAA--AA--TTTACTTTTCGAAAATAAT-AT-T----TATATTTC----TTTAAG---CCAATA---ATTA-ATTTC--GAAAT-A-TAT--TTTCTTT-AATTTC--TTACCTTTGAC-A------GCATGAACATAAGACTTTTGA----------------------CCCTAAA--TT--ACTCA--GTATT--TATAG-CA-A--TAATGC-TGAAATTGAAAATCGCTTAAACGATACAAGGTANCAAATATNTAGAANATATATAAGGAGAATCA-----ACAT-NG---TTTCTCAAACCTT-TTGGA-TTT-G-TTAAT-ATTAGT-TTGACGNATACAT--A---TCCTC-T-GTGT-AAACTAACTTTGTGG-A-GCTTGTACAGAC-A--ATTTCAAN--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCCGT-ACATCNAGAAGCCCAGACTGGG-TTCACA-GAGAGCAGTT--T---AGAGCCAGTCCGATGTAGTAAGATAA
Reference ( gi|2 ) : GGGTGTAAAAGGCAATA--------CGA--------GACACCAGATACGAGAAACAAA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTA-TGA-AGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--ACA---TT--ATGA-----GCT-CA-ATATAAAA-TAA--C-AA-TTT---CAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA-GACATTTATT-TGA---------AC-TCAAAAA----T-AA-----TGGT--GAA-ATCAC-ATG-ATCAA-TG-T-CATCTGTGTAAGGAAACCCAAAGTTTA-CAGAG-CCATTATTTATGAAATCTTGGATG-GT------GCGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-A------CAT-TATTGTTATGTCTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTGTACGT-GAATA----------------CTGG-TG-CT--CATTTCAA--AA--TTTACTATTCAAAAATAAT-AT-T----TATATTTC----TTGAAG---CCAATA---ATTA-ATTTT--GAAAT-T-TAT--ATTTTTT-AAGTTC--TTACCTTTGAC-A------GCATGAACATAAGACTTTTGA----------------------CCATAAA--TT--ACTCA--GTATT--TATAG-CA-A--TAATGC-TGAAATTGAAAATCG---------TAC----T-T--AATATGT----TAT---------GAATCT-----ACAT-TA---TTTTTCAAAACTT-TTGG--TTT-G-TTAAT-ATGAAT-TTGACAGATACATCGGGGCTCCTC-T-GTGT-AAACTAACTTTATGT-A-GCTTATACAGAA-A--ATTTCAAC--ACATAGCTT-AGT-C-TGTCGTTTT-TAAT--CCGT-ACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCACCT--T---AGCGCAAGTCTGATGTGGAAAGATAA
gi|6 : GTGTAAAAGGCAATA--------CGA--------GACACCAGATACGAGAA-CAGA-------GATACCAGAT-ACCA-A---T-ACA---TA--A---TC-ATTA-TGA-AGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--ACA---TT--ATGA-----GCT-CA-ACATAAAAATAG--C-AAATTT---CAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC-GACATATATT-TGA---------AA-TGAAAAA----TTAA-----TGGTTGGGA-ATCACTATGCATCAA-TG-A-CATCTGCGTGGGGAAACCCCAAGTTTA-CAGAG-TCATTATTTATGTAATATTGGACG-GT------GCGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-A------CAT-TATTGATATGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTGTAAAT-GAATA----------------CTGG-TG-CT--CATTTCAA--AA--TTTACTTTTCAAAAATAAT-AT-T----TACATTTC----TTTAAG---TCAATC---ATTA-ATTTC--GAAAT-A-TAT---TTTTTT-AAGTTC--TTACCTTTGAC-A------GCATGAATATAAGACGTTTGA----------------------CCCTAAA--TT--ACTCA--GTATT--TATAG-CA-A--TAATGC-
gi|4 : GTGTAAAAGGCAATAAGATGAAACGA--------GACACCAGATACAAAAAATAGAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTA-TGA-AGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--ACA---TT--A--------------------------A--C-AA-TTT------------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA-AACATATTTT-TAA---------GA-TGAAAAAAAAGT-AA-----TGAT--GGA-ATCAC-ATT-ATCAA-CA-C-CAT--GTGTGGGGAAATGCAAAGGTTA-CAGAG-TCAGTATTTATGTAATCTTGGGTG-GTTTAATAACGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-A-------AG-AGGTGTTA--ACTATTACAGTGTAC------------------ATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTATA-----AAT--------------------------T--C------A--AA--TATACTTTTTAAAAATAAT-AT-T----TATATTTC----TTTAAG---CTAATG---ATTA-ATTTT--GAAAT-A-TAT--TTTCTTT-AATTTC--TTACCTTTGAC-A------ACATCAACAGAAGAGTTTCGAAGATTTTGTTTTTCGACATTG-CCATAAA--TT--ACTCA--GTAT
gi|3 : tgtGTGTAAAAGGCAATA--------CGAAGAAACGAGACACCAGACACCAGAAACAGA-------GATACGAGAT-ACCA-A---T-gaaaatgtttaaactatacctgcatatatactatatatattatattcataaactatatattaacgaagaaaatagtaatcaacatggtttctcaaacattttggttttgttaata
gi|14 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATA--------CGAAGAAACGAGACACCAGATACGAGAAACAGACATACGAGATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTA-TGA-AGCTATCA--A--TTTATTacacc
gi|20 : tGTGTAAAAGGCAATA--------CGAAGAAACGAGACAACAGATACGAGAAACAGA-------GATACCAGAG-TCCA-A---c
gi|9 : tgtGTGTAAAAGGCAATA--------CGAAGAAACGAGACATCAGACACCAGAAAAAGA-------GATACGGGAT-ACCA-AATTT-ACA-A-
gi|13 : gtatctttcaaactagtattataaatgtcaacaaaaccaaaacgccacGTGTAAAAG--AA-A--------CGA--------GACACCAGACAC---------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT--CGA-GCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--ATA---TT--acac
gi|11 : atataGTGTAAAAG-CAATA--------CGAA-------GAAACGAGA-ACCAGACATACACC-----GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGTTGATATTTAACA--A----TACTAGCTTGacatcc
gi|19 : tatcttacacgagagtgtatcttA--------CGA--------GACACCTGGTACGAGAAACA----------------GAT-ACCA-A---T-ATA-A-TA--AA--TT-ATTA-TAA-GGCTATCA--A--TTTATTac
gi|5 : A--------CGA--------GAG--TAGATCC---AAACGGA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--A-TGC-A-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAACAGCGTT--ACGATGCCAGCT-CC-AC-TAAAA-TGATGC-AA-TTC---CAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACA-T-CAACTATTGTAAGGGATGTATACGTCAATAG----A-AA-----TAG---GGA-ATCAC-ATT-ATCAAATGATACATCTGCG---GGAACCCCAAAGTTTGTCAGAC-TCAGTATTTATG-TACCTTGGGTGTGT-------CTC-CTTCTCCC-GGTTGCTTT-----TTTTG--CTATG-AAAAGGGCAT-TACTATCAT---TAATA-A--------ATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATT-AAATAGGAACGATGATCCTTCCTGG-TATCTTGCATTGTTA--AT--TTTA-----CGGAACTA---AT-T----TAC-TTTC--------AG------ATA---AATATATTTC---ATAT-T-TATTCATCTTTCGAAATTC--TGAACTTT--C-A------AGA-GAA-ATAAAA--TTTG----------------------------GA--TT--TCT-------TT--TA-AGCCA-A--TATTAT-TGAAATTca
gi|7 : A-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTA-TGT-AGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--ACA---TTTAATCA-----GCTCCACATATAAAA-TAG--CAAA-TTT---CAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA-GACA--TATT-T--------------T---AAA----T----------GT--GAA-ATCAC-AT
gi|1 : gtaaacaagacacccattcattcaaatcaacgtatacgCA-A---TGACACA-TA--GA--TTAGATA-TGA-AGC-ATCA--AAGTTTATTAATC-GGAACT---T--TTCATT-G--A-A---TT--TTGA-------T-TA-CCAT-----TGA--T-CT-TTTTTCCACTA---TAAAT-A-G-CAA-------------ATT---TTTA-C------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACATGACAT--AT-------------------AAAAT----T-AACCGTGTGGT--GGAGATCAC-ATT-ACAAG-TG-A-CAACGGTG---GGGAACCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTG-GT------GCCCGTTTCTCCCGG-TTG---------CTC----TAACG---------------TACTA-----ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--GTAAATAGAATA----------------CTGGGTG-CT---ATTAAAA--AAATTTTACT-TTTAAAAATAAT---------T-TATTTC----TTTAAG---C-AA-A---ATTA-ATTTC--GAAATAT-TTT--TCTTTCT-AATTTC--TTACCTTTGACAA------GCATGAA-ATAAGACTTTTGAAGTTTTTTCTTTTCGAAGATTGCCCTAAA--TTCAACTAA--GCAT-----TAG-C--A--TAATGCTTGACATTGAAAATTGCTTAAACGATAC----TATCAAATATATAGAATATATATAAGGAGAATATGAACAACAT-TGACTTTTTTC-AAACTT-TTGGA-TTT-G-TTAATGATCAG--TTGACAGAT--ATCTA---TTCTCTT-GTGT-AAACTAAC-TTATGG-ATGCTTGTACAGAC-A------TAAA--GCACTGCGT-AG----TGC--TTTT-TATT--TCCTGAC-TCAAG-AG------CTGGG-ATCACATGAGTACAGGTTAT---AGAGCCAGTCCGAttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|17 : tgtTTAATC-AGTACT---T--G-CATTTG--ACA---TT--ATCA-----GCT-CC-ATGTAAAA-TAG--TAAA-TTT---TAGCAAGTTTAAT-GAA-CAA--------TTT-agatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|12 : TT---CAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA-GACTTTTTTT-TAG---------A---TAAAAA----A-AA-----AGAT--AGA-ATTAT-ATT-GTCAA-
gi|21 : CGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAA------CATGTATTA--A---CTATTACAGTGTATATAT
gi|15 : aa--CATTTAAA--AA--TTTACTTTACAAAAATAAT-AT-T----TATATTTC----TTTAAG---GCAATA---ATTA-ATTTT--GAAAT-A-TAT--TTTCTTT-AATTTC--TTGCCTTTGAC-A------GCA
gi|7 : TCAATTAA--TATACTTTTTGAAAATAAT-AT-TAATTTATATTTC----TT-AAG---TCAATA---GTTT-ATTTT--GAAAT-G-TAC--TTTCTTT-A--TTT--TTTTTTTCGAC-A-----------------------TTG-----------------------CCCTAAA--TT--ACTCA--GTGTT--AAT---TA-A---AATGC-
gi|3 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttacAATAGTTATGT----TATATT-CGAAATT-AAGTCACCAATATAGGTTA-ACTTTCAAAAAT-TATAT--ATTATGC-AA--TA--TTAT---------------GC-TGAACATA-------TG--------------------------TAAAATCT--ATTAAACGTATTAATATAG-CACACCTAGTAT---AAATAGAAA--CC---------TACAAGGT-G--AA-ATTT----AAT---------GAATCA-----ACATGTA---TTTCTCAAACCTTGTCGGAGTTTAG-GTAAA-ATTAGTCTTGACAAATACGT-AACGCTCCTC-TTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAGAC-A--ATTTCAACGTACATA-CTTAAGTCC-TGTCGTTTT-TAATTCCTGT-ACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCAGTT--TTAAAGAGCCAGTCCGATGTAGTAAGATAAat
gi|16 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgA-ATTTT--GAAAT-A-TAT--TTTCTTT-A--TTCTTTTATCTTTGAC-AGCATATGCATGAACATAAAACTTTTGA----------------------agttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|23 : -ATTTT--GAAAT-A-TAT--TTTCTTT-CATTTC--TTACCTTTGAC-A------GCGTatttttttttctacattaccctaaattact
gi|4 : AATCA-----ACAT-GG---TTTCTCAAACATT-TTGGT-TTT-G-TTAAT-A
gi|10 : tgtgtgtaaaaggcaataagatgaaacgagacaccagatacaaaaaatagaaatatgagataccagataccaatacaatgaattattatgaagctctcaatttattcattcggtacttgcatttgacattaacaattttagtgaacaatttagttgcttcaacgtgaccttggtgacttcctctggtaaataacaaacatatttttaagatgaaaaaaaagtaatgatggaatcacattatcaacaccatgtgtggggaaatgcaaaggttacagagtcagtatttatgtaatcttgggtggtttaataacgctttttcctgggttgctttctatgcttaaatgaagaggtgttaactattacagtgtacatgtgatttattttgcactttttaaatttataaattcaaatatactttttaaaaataatatttatatttctttaagctaatgattaattttgaaatatattttctttaatttcttacctttgacaacatcaacagaagagtttcgaagattttgtttttcgacattgccataaattactcagtatgaaaatgtttaaactatacctgcatatatactatatatattatattcataaactatatattaacgaagaaaatagtTCA-----ACAT-GA---TTTCTCAAACCTT-TTGG--TTT-TCTTAAT-ATTAAT-TTGACGTATACAT---------TC-T-CTGT-AAACTAACTTTGTGG-G-GCTTGTACAGAC-A--AT--------------CTT-AGT-C-TGTCGTTTT-TAATTCCTGT-ACA
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAAT--ACATA-----AGG-CGTTTCGTTTTCTAAT--TC
gi|8 : ACTGGG-TTCACA-GAGAGCAGTT--T---AGctgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Unaligned ( gi|24 ): GTGTGTGTAAAGGCAATACGAAGAAACGAGACACCAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 111111 111111 2222222222 11111 11111111 111111 1111 11 6666666666666666666666666666666 111111 111111 2222222 4444444444444444444444444444 222 11111111111111 11 11 1111 11 111111 1111 11 111111 99999999999999999999999999999999999999999999 11 11111111 11111 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222 222222 11 11 5555555555 111 1 111 2222222222222222222222222222 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 333 66 5 66 888 66 0 555555 222222 0000000000 5 3 0 55555 88888888 5 88 0 666666 77 77 6666 5 5 77 33 3333333333333333333333333333333 888 888 999999 77 5 5 5 0 999999 99999 3 6 1 6 5 1 8 6666666 6 0 9 2222222222222222222222222222 0 666 3 55555555555555 00 5 0 11 8 8 8 8 0 7777 99 6 1 666666 8 77 5 8888888 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 22222222222222222222222222222222222222222222 777 22 0 5 88888888 5 00000 8 8888 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 00000 222222 5 8 99 8 8 0 33 33 0 5555555555 0 111 0 0 0 000 8 0000000000000000000000000000 8 0 2 0 3 1 0 7777 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . ... .. . .. ... .. . ...... ...... .......... . . . ..... ........ . .. . ...... .. .. .... . . .. .. ............................... ... ... ...... .. . . . . ...... ..... . . . . . . . ....... . . . ............................ . ... . .............. .. . . .. . . . . . .... .. . . ...... . .. . ....... .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................................ ... .. . . ........ . ..... . .... . ........................................................................................ ..... ...... . . .. . . . .. .. . .......... . ... . . . ... . ............................ . . . . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 888 99 0 99 888 99 7 000000 111111 1111111111 7 1 4 11111 11111111 0 77 1 444444 99 99 1111 7 7 99 66 9999999999999999999999999999999 000 111 444444 99 7 7 7 1 999999 55555 2 7 0 7 6 0 0 2222222 7 7 3 7777777777777777777777777777 3 222 2 99999999999999 88 0 8 88 0 0 0 0 8 0000 00 7 0 444444 6 99 7 9999999 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 00000000000000000000000000000000000000000000 222 77 3 7 44444444 7 44444 0 4444 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 666666 0 0 22 0 0 8 22 00 8 5555555555 2 000 0 8 8 000 0 6666666666666666666666666666 0 8 8 8 2 0 7 3333 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--ACA---TT--ATGA-----GCTCNAC--ATAAAA---TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-AT-T-------ATTT--------A------AAT--AAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATCTGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTG-GT------GCGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-ACA---T-ATTGTTAT--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATA-GAATACTGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATA----CA-GCGTACCNAATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACATG-A---TTTCTCAAACCTT-TTGGN-TTT-GTTAAT-ATTAGT-TTGACAGATACGT-----A----TCCTC-T-GTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAAC--ACA-TA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--ACA---TT--ATGA-----GCTCAAC--ATAAAA---TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-AT-T-------ATTT--------A------AAT--AAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-CGN--CATCTGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATNTTGGGTG-GT------GCGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-ACA---TTATTATTAT--CTATTACAGTGTATCTATAGTATTGTACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAAT--GAATACTGG-TGCT------CATTTNAAAA--T-TTACTTTT-CGA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGCTTAAACG-----ATA----CA-AGGTANCAAATAT---------N--TAGAANATATAT-----AAGG---------A-G-----AAT-----CAACATN-G---TTTCTCAAACCTT-TTGGA-TTT-GTTAAT-ATTAGT-TTGACGNATACAT-----A----TCCTC-T-GTGT-AAACTAACTTTGTGG-A-GCTTGTACAG-ACA--ATTTCAAN--ACA-TA-CTTA-GTC-TGTCGTTTT-TAATTCCCGTACATCNAGAAGCCCAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACT---T--TTCATT-G--A-A---TT--TTGA-------TTACC--ATTGATCTTT---------TTTCCACTA--TAAAT-A-G-CAA-------------ATT---TTTA-C------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACAT-GAC-AT-----------------------------AT--AAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC-G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTG-GT------GCCCGTTTCTCCCGG-TTGCTCT-------------AACG-----------TACTA-----ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--G----TAAATA-GAATACTGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTG------------------AAGTTTTTTCTTTTCGAAGATTGCCCTAAATTCAACTAAGCAT-T-------AG-CA-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATA----C-----TATCAAATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATT-GACTTTTTTCAAA-CTT-TTGGA-TTT-GTTAATGATCAG--TTGACAGATATCT-----A----TTCTCTT-GTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA------TAAA--GCACTG-CGTA-G---TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACATG-A---TTTCTCAAACCTT-TTGGT-TTT-CTTAAT-ATTAAT-TTGACGTATACAT-------------TC-T-CTGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTTA-GTC-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA--GACTTT-T-------TTTT--------A------GAT--AAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--ATA---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : t------CATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGAATTTTTTTTTCTACATTA----------------------CCCTAAATT--ACT
gi|17 : TTAAT-CAGTACT---T--G-CATTTG--ACA---TT--ATCA-----GCTCCAT--GTAAAA---TA--GTAAA-TTTTAGCAAGTTTAAT-GAA-CAA--------TTT-
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAAT--ACA-TA----A-GGCGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--ACA---TT--ATGA-----GCTCAAT--ATAAAA---TA--AC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA--GAC-AT-TT------ATTT--------G------AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATCTGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATG-GT------GCGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-ACA---TTATTGTTATGTCTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TACGT--GAATACTGG-TGCT------CATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCATAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATC--------------------------GTACTTAATAT---------G--T------TAT----------------------G-----AAT-----CTACATT-A---TTTTTCAAAACTT-TTGG--TTT-GTTAAT-ATGAAT-TTGACAGATACATCGGGGC----TCCTC-T-GTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAAC--ACA-TAGCTTA-GTC-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgtCGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAACA---T--GTATTAA--CTATTACAGTGTATATAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GT
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCA------------------A--------------------------AAATT--A-----TATATT----AT-G-CAATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATA----TA-GCACACCTAGTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACATGTA---TTTCTCAAACCTTGTCGGAGTTTAGGTAAA-ATTAGTCTTGACAAATACGT-----AACGCTCCTC-TTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAACGTACA-TA-CTTAAGTCCTGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-agttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--ACA---T------------------------------TA--AC-AA-TTT---------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA--AAC-A--T-------ATTTTTAAGATGA------AAA--AAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCAA-CAC--CA--TGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTG-GTTTAATAACGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-A-A---GAGGTGTTAA--CTATTACAGT------------------GTACATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTA----TAAAT---------------T------C------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCG------------------A--------------------------AGATT---TT--GTTT-TTCGACATTG-CCATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACATG-G---TTTCTCAAACATT-TTGGT-TTT-GTTAAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAACAGCGTT--ACGATGCCAGCTCCAC---TAAAA---TGATGC-AA-TTCCAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTAT-TGTAAGGGATGT--------ATACGTCAAT--AGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATCTGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGTA-CCTTGGGTGTGT-------CTC-CTTCTCCCGG-TTGCTTT-----TTTTG--CTATG-AAAAGGGCATTACTAT--C-ATTA------ATAAATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGAACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTA--ATT----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG----------------------------------------------GATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--ACA---TT--ATGA-----GCTCAAC--ATAAAAA--TA--GC-AAATTTCAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC--GAC-ATAT-------ATTTG-------A------AAT--GAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATCTGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACG-GT------GCGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-ACA---TTATTGATATGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TAAAT--GAATACTGG-TGCT------CATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--ACA---TTTAATCA-----GCTCCACATATAAAA---TA--GCAAA-TTTCAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA--GAC-AT-A-------TTTT--------A------AAT-------------------GT--GAA-ATCAC-AT-T-----------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACT------CAATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTG-----------------------------------------CCCTAAATT--ACTCAGTGT-TA----AT---TAA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataGTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 1111 222222222222222222222222222222 1 2222222222222222 111111 1111 11 66666666666666666666666666666666 111111 1111111 1111 222222 44444444444444444444444444444444444444 11111111111111 11 1111 2 11 111111 1111 11 111111 99999999999999999999999999999999999999999999 11 11111111 11111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 1111 11 333333333 555555555555 111 111 1111111111111111111111111111 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 333 66 5 66 0000 888 555555555555555555555555555555 77 77 1 5 1 3 0 3333333333333333 5 5 666666 77 77 6666 5 5 77 33 33333333333333333333333333333333 77 0 888 999999 77 5 5 5 0 5555555 1 0000 3 6 1 6 0 333333 6 6 0 1 44444444444444444444444444444444444444 3 55555555555555 77 5 0 11 8 8 8 8 0 7777 0 5 11 6 1 666666 8 77 5 55 888 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 22222222222222222222222222222222222222222222 777 22 0 5 88888888 5 00000 8 8888 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00000 8 3333 5 6 44 6 6 222222222 88 111111111111 666 8 0 0 000 8 8888888888888888888888888888 8 0 0 3 4444 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . ... .. . .. .... ... .............................. .. .. . . . . . ................ . . ...... .. .. .... . . .. .. ................................ .. . ... ...... .. . . . . ....... . .... . . . . . ...... . . . . ...................................... . .............. .. . . .. . . . . . .... . . .. . . ...... . .. . .. ... .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................................ ... .. . . ........ . ..... . .... . ........................................................................................ ..... . .... . . .. . . ......... .. ............ ... . . . ... . ............................ . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 888 99 0 99 6666 888 222222222222222222222222222222 11 99 4 7 4 1 1 8888888888888888 0 7 444444 99 99 1111 7 7 99 66 99999999999999999999999999999999 99 1 111 444444 99 7 7 7 1 1111111 8 3333 2 7 0 7 8 000000 7 7 7 0 22222222222222222222222222222222222222 2 99999999999999 66 0 8 88 0 0 0 0 8 0000 4 6 00 7 0 444444 6 99 7 22 888 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 00000000000000000000000000000000000000000000 222 77 3 7 44444444 7 44444 0 4444 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000 0 0000 0 7 22 7 7 000000000 88 666666666666 888 0 8 8 000 0 8888888888888888888888888888 0 8 8 2 0000 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-ACG----TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACA-TG-A--TTTCTCAAACCTT-TTGGT-TTT-GTTAAT-ATT---------AGT-TTGACAGATAC-T-----A----TTCTC-T-GTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CNAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-ACA----TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATACA-GCGTAC---CNA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACA-TG-A--TTTCTCAAACCTT-TTGGN-TTT-GTTAAT-ATT---------AGT-TTGACAGATACGT-----A----TCCTC-T-GTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACT---T--TTCATTGA--ATTTTGA---TT--ACCATTGA-----TCTTTTTTCCACT-ATAAA--TA--GC-AA------------------------A--------TTT--------TT--AC------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACAT-GAC-A-T-----------------------------A--TAAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC--G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTGGT------G-CCCGTTTCTCCCGG-TTGCTCT----------------A-ACG----TACTA----------ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--G----TAAATAGAATAC--TGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTG------------------AAGTTTTTTCTTTTCGAAGATTGCCCTAAATTCAACTAAGCAT-T-------AG-CA-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATAC-----TAT---CAA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATTG-ACTTTTTTCAAA-CTT-TTGGA-TTT-GTTAATGATC---------AG--TTGACAGATATCT-----A----TTCTCTT-GTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA-----TAAAGC--AC-TG-CGTA-G---TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACA-TG-A--TTTCTCAAACCTT-TTGGT-TTT-CTTAAT-ATT---------AAT-TTGACGTATAC-------A----TTCTC----TGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTTA-GTC-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA--GACTT-T-T-------TTTT--------A------GA--TAAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--AT----A---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : t------CATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGAATTTTTTTTTCTACATTA----------------------CCCTAAATT--ACT
gi|17 : TTAAT-CAGTACT---T--G-CATTTG--AC----A---TT--A----TCA-----GCT-----CCAT--GTAAAA-TA--GTAAA-TTTTAGCAAGTTTAAT-GAA-CAA--------TTT-
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAA-T--ACATA----A-GGCGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAT--ATAAAA-TA--AC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA--GAC-ATT-T-------ATTT--------G------AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATC-TGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATGGT------G-CGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-ACAT---TATTGTTATGT--CTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TACGT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCATAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAAT----------------------CGTAC---TTA-ATAT---------G--T----TAT------------------------G-----AAT-----CTACA-TT-A--TTTTTCAAAACTT-TTGG--TTT-GTTAAT-ATG---------AAT-TTGACAGATACATCGGGGC----TCCTC-T-GTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAA-C--ACATAGCTTA-GTC-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgt-CGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAACA----TG-TATTA--A--CTATTACAGTGTATATAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GT
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCA------------------A--------------------------AAATT--A-----TATATT----AT-G-CAATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATATA-GCACAC---CTA-GTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACA-TGTA--TTTCTCAAACCTTGTCGGAGTTTAGGTAAA-ATT---------AGTCTTGACAAATACGT-----AACGCTCCTC-TTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAA-CGTACATA-CTTAAGTCCTGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccT-TTGTT-TTT-GTTGAT-ATTCATAATTATAGT-TTGAAAGATAC-------A----TTCCC-T-GTGT-AAAagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctaGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-cagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--AC----A---T-------------------------------------TA--AC-AA-TTT---------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA--AAC-A---T-------ATTTTTAAGATGA------AA--AAAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCA----A--CACCATGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGTTTAATAA-CGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-AAG----AGGTGTTA--A--CTATTACAGT------------------GTACATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTA----TAAAT----------------T------C------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCG------------------A--------------------------AGATT---TT--GTTT-TTCGACATTG-CCATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACA-TG-G--TTTCTCAAACATT-TTGGT-TTT-GTTAAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAAC----AGCGTT--A----CGATGCCAGCT-----CCAC---TAAAA-TGATGC-AA-TTCCAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTA-T-TGTAAGGGATGT--------ATACGTCAA--TAGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATC-TGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGT-ACCTTGGGT-GT------GTCTC-CTTCTCCC-GGTTGCTTT-----TTTTG--CTATG-AAAAGGGCATTACTA--T--C-ATTA------ATAAATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGA-ACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTA--ATT----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG----------------------------------------------GATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAC--ATAAAAATA--GC-AAATTTCAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC--GAC-A-TAT-------ATTTG-------A------AA--TGAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATC-TGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACGGT------G-CGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-ACAT---TATTGATA--TGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TAAAT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--AC----A---TTTAA----TCA-----GCT-----CCACATATAAAA-TA--GCAAA-TTTCAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA--GAC-A-T-A-------TTTT--------A------AA--T-----------------GT--GAA-ATCAC-AT-T------------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACT------CAATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTG-----------------------------------------CCCTAAATT--ACTCAGTGT-TA----AT---TAA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataGTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 1111 222222222222222222222222222222 1 2222222222222222 111111 1111 11 66666666666666666666666666666666 111111 1111111 1111 2222222 444444444444444444444444444444444444444 11111111111111 111111 2 11 111111 1111 11 111111 99999999999999999999999999999999999999999999 11 11111111 11111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 1111 222222222 222222222 6666666666 111 111 1111111111111111111111111111 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 333 66 5 66 0000 888 222222222222222222222222222222 77 77 1 5 1 3 0 3333333333333333 5 5 666666 77 77 6666 5 5 77 33 33333333333333333333333333333333 77 0 888 999999 77 5 5 5 0 5555555 1 0000 3 6 1 6 5 8 6666666 6 0 9 666666666666666666666666666666666666666 3 55555555555555 77 5 0 8 6 8 8 8 0 888888 0 5 11 6 1 666666 8 77 5 55 888 3 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 00000000000000000000000000000000000000000000 777 22 0 5 88888888 5 00000 8 8888 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000 8 3333 5 5 999 222222222 5 666666666 6 6 1111111111 666 8 0 0 000 8 8888888888888888888888888888 8 0 0 3 4444 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . ... .. . .. .... ... .............................. .. .. . . . . . ................ . . ...... .. .. .... . . .. .. ................................ .. . ... ...... .. . . . . ....... . .... . . . . . . ....... . . . ....................................... . .............. .. . . . . . . . . ...... . . .. . . ...... . .. . .. ... . .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................................ ... .. . . ........ . ..... . .... . ........................................................................................ ..... . .... . . ... ......... . ......... . . .......... ... . . . ... . ............................ . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 888 99 0 99 6666 888 999999999999999999999999999999 11 99 4 7 4 1 1 8888888888888888 0 7 444444 99 99 1111 7 7 99 66 99999999999999999999999999999999 99 1 111 444444 99 7 7 7 1 1111111 8 3333 2 7 0 7 6 0 2222222 7 7 3 222222222222222222222222222222222222222 2 99999999999999 66 0 8 0 0 0 0 0 8 222222 4 6 00 7 0 444444 6 99 7 22 888 2 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 99999999999999999999999999999999999999999999 222 77 3 7 44444444 7 44444 0 4444 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 0 0000 0 7 666 999999999 7 777777777 7 7 1111111111 888 0 8 8 000 0 8888888888888888888888888888 0 8 8 2 0000 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTG-GT------GCGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-AC----G-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCAC-TTTT-CAAATTT---G--TAAATAGAATAC--TGG-TGCTC------ATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAGC-AATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACA-TG-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTCTC-T-GTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTG-GT------GCGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-AC----G-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCAC-TTTT-CAAATTT---G--TAAATAGAATAC--TGG-TGCTC------ATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAGC-AATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACA-TG-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-------TTCTC-T-GTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACT---T--TTCATTGA--ATTTTGA---TT--ACCATTGA-----TCTTTTTTCCACT-ATAAA--TA--GC-AA------------------------A--------TTT--------TT--AC------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACAT-GAC-A-T-----------------------------A--TAAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC--G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTG-GT------GCCCGTTTCTCCCGG-TTGCTCT----------------A-AC----G-TACTA----------ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCAC-TTTCGCAAAA-----G--TAAATAGAATAC--TGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTG------------------AAGTTTTTTCTTTTCGAAGATTGCCCTAAATTCAACTAAGCAT-T-------AGC-A-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATAC-----TAT---CAA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATTG-ACTTTTTTCAAA-CTT-TTGG--ATTTGTT---------AATGAT---------CAG--TTGACAGATATC-TA-------TTCTCTT-GTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA-----TAAAGC--AC-TG-CGTA-G---TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACA-TG-A--TTTCTCAAACCTT-TTGG--TTTTCTT---------AAT-AT---------TAAT-TTGACGTATA-C--A-------TTCTC----TGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTTA-GTC-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA--GACTT-T-T-------TTTT--------A------GA--TAAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--AT----A---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : tC------ATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGAATTTTTTTTTCTACATTA----------------------CCCTAAATT--ACT
gi|17 : TTAAT-CAGTACT---T--G-CATTTG--AC----A---TT--A----TCA-----GCT-----CCAT--GTAAAA-TA--GTAAA-TTTTAGCAAGTTTAAT-GAA-CAA--------TTT-
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAA-T--ACATA----A-GGCGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAT--ATAAAA-TA--AC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA--GAC-ATT-T-------ATTT--------G------AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATC-TGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATG-GT------GCGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-AC----ATTATTGTTATGT--CTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACAC-TTTT-CAAATTT---G--TACGT-GAATAC--TGG-TGCTC------ATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCATAAATT--ACTCAGTAT-TT----ATAGC-AATA--A--TGCT-GAA-AT-TG-AAAAT----------------------CGTAC---TTA-ATAT---------G--T----TAT------------------------G-----AAT-----CTACA-TT-A--TTTTTCAAAACTT-TTGG---TTTGTT---------AAT-AT---------GAAT-TTGACAGATA-C--ATCGGGGCTCCTC-T-GTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAA-C--ACATAGCTTA-GTC-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgtCGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAAC----A-TG-TATTA--A--CTATTACAGTGTATATAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GT
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCA------------------A--------------------------AAATT--A-----TATATT----AT-GC-AATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATATA-GCACAC---CTA-GTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACA-TGTA--TTTCTCAAACCTTGTCGGAGTTTAGGT---------AAA-AT---------TAGTCTTGACAAATA-CGTAACGC---TCCTC-TTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAA-CGTACATA-CTTAAGTCCTGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccT-TTGT--TTTTGTT---------GAT-ATTCATAATTATAGT-TTGAAAGATA-C--A-------TTCCC-T-GTGT-AAAagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctaGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-cagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--AC----A---T-------------------------------------TA--AC-AA-TTT---------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA--AAC-A---T-------ATTTTTAAGATGA------AA--AAAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCA----A--CACCATGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTG-GTTTAATAACGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-AA----G-AGGTGTTA--A--CTATTACAGT------------------GTACATGTG-ATTTATT-TTGCAC-TTTT-TAAATTT---A--TAAAT----------------TC------------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCG------------------A--------------------------AGATT---TT--GTTT-TTCGACATTGC-CATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACA-TG-G--TTTCTCAAACATT-TTGG--TTTTGTT---------AAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAAC----AGCGTT--A----CGATGCCAGCT-----CCAC---TAAAA-TGATGC-AA-TTCCAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTA-T-TGTAAGGGATGT--------ATACGTCAA--TAGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATC-TGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGTA-CCTTGGGTGTGT-------CTC-CTTCTCCCGG-TTGCTTT-----TTTTG--CTATG-AAAAGGG-CATTACTA--T--C-ATTA------ATAAATAGTATTGTACGTACA-GTA-A-TTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGA-ACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTAAT--T----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG------------------G----------------------------ATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAC--ATAAAAATA--GC-AAATTTCAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC--GAC-A-TAT-------ATTTG-------A------AA--TGAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATC-TGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACG-GT------GCGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-AC----ATTATTGATA--TGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACAC-TTTT-CAAATTT---G--TAAAT-GAATAC--TGG-TGCTC------ATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAGC-AATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--AC----A---TTTAA----TCA-----GCT-----CCACATATAAAA-TA--GCAAA-TTTCAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA--GAC-A-T-A-------TTTT--------A------AA--T-----------------GT--GAA-ATCAC-AT-T------------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACTC------AATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTG-----------------------------------------CCCTAAATT--ACTCAGTGT-TA----AT--T-AA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataTT-TTGG--TTTTGTTGACATTTATAAT-AC---------TAGT-TTGAAAGATA-C-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
gi|9 : GTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-cgccacttgtaaatttggtatcccgtatctctttttctggtgtctgatgtctcgtttcttcgtattgccttttacacacac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 1111 222222222222222222222222222222 1 2222222222222222 111111 1111 11 66666666666666666666666666666666 111111 1111111 1111 222222 444444444444444444444444444444444444444 11111111111111 11 1111 2 11 111111 1111 11 111111 99999999999999999999999999999999999999999999 11 11111111 11111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 111111 222222222 222222222 555555555555 11 111 1111111111111111111111111111 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 333 66 5 66 0000 888 222222222222222222222222222222 77 77 1 5 1 3 0 3333333333333333 5 5 666666 77 77 6666 5 5 77 33 33333333333333333333333333333333 77 0 888 999999 77 5 5 5 0 5555555 1 0000 3 6 1 6 0 333333 6 6 0 1 666666666666666666666666666666666666666 3 55555555555555 77 5 0 11 8 8 8 8 0 7777 0 5 11 6 1 666666 8 77 5 55 888 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 22222222222222222222222222222222222222222222 777 22 0 5 88888888 5 00000 8 8888 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000 666666 5 5 999 222222222 5 666666666 6 000000000000 8 66 8 0 0 000 8 8888888888888888888888888888 8 0 0 3 4444 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . ... .. . .. .... ... .............................. .. .. . . . . . ................ . . ...... .. .. .... . . .. .. ................................ .. . ... ...... .. . . . . ....... . .... . . . . . ...... . . . . ....................................... . .............. .. . . .. . . . . . .... . . .. . . ...... . .. . .. ... .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................................ ... .. . . ........ . ..... . .... . ........................................................................................ ..... ...... . . ... ......... . ......... . ............ . .. . . . ... . ............................ . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 888 99 0 99 6666 888 999999999999999999999999999999 11 99 4 7 4 1 1 8888888888888888 0 7 444444 99 99 1111 7 7 99 66 99999999999999999999999999999999 99 1 111 444444 99 7 7 7 1 1111111 8 3333 2 7 0 7 8 000000 7 7 7 0 222222222222222222222222222222222222222 2 99999999999999 66 0 8 88 0 0 0 0 8 0000 4 6 00 7 0 444444 6 99 7 22 888 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 00000000000000000000000000000000000000000000 222 77 3 7 44444444 7 44444 0 4444 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 000000 0 7 666 999999999 7 777777777 7 111111111111 0 88 0 8 8 000 0 8888888888888888888888888888 0 8 8 2 0000 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-ATT---------AGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-ATT---------AGT-TTGACAGATA-C-TA-CG----TTC-TCT-GTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTTA-GTC-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACT---T--TTCATTGA--ATTTTGA---TT--ACCATTGA-----TCTTTTTTCCACT-ATAAA--TA--GC-AA------------------------A--------TTT--------TT--AC------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACAT-GAC-A-T-----------------------------A--TAAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC--G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTGGT------G-CCCGTTTCTCCCGG-TTGCTCT----------------A-A----CG-TACTA----------ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--G----TAAATAGAATAC--TGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTG------------------AAGTTTTTTCTTTTCGAAGATTGCCCTAAATTCAACTAAGCAT-T-------AG-CA-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATAC-----TAT---CAA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATTG-ACTTTTTTCAAAC-TT-TTGG--ATTTGTT---------AATGATC---------AGT-T-GACAGATATC-TA-------TTC-TCTTGTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA-----TAAAGC--AC-TG-CGTA-G---TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTCTT---------AAT-ATT---------AAT-TTGAC--GTA---TA-CA----TTC-TC---TGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTTA-GTC-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA--GACTT-T-T-------TTTT--------A------GA--TAAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--AT----A---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : t------CATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGAATTTTTTTTTCTACATTA----------------------CCCTAAATT--ACT
gi|17 : TTAAT-CAGTACT---T--G-CATTTG--AC----A---TT--A----TCA-----GCT-----CCAT--GTAAAA-TA--GTAAA-TTTTAGCAAGTTTAAT-GAA-CAA--------TTT-
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAA-T--ACATA----A-GGCGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAT--ATAAAA-TA--AC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA--GAC-ATT-T-------ATTT--------G------AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATC-TGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATGGT------G-CGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-A----CATTATTGTTATGT--CTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TACGT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCATAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAAT----------------------CGTAC---TTA-ATAT---------G--T----TAT------------------------G-----AAT-----CTACAT-T-A--TTTTTCAAAACTT-TTGG---TTTGTT---------AAT-ATG---------AAT-TTGACAGATA-C-AT-CGGGGCTCC-TCT-GTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAA-C--ACATAGCTTA-GTC-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgt-CGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAA----CA-TG-TATTA--A--CTATTACAGTGTATATAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GT
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCA------------------A--------------------------AAATT--A-----TATATT----AT-G-CAATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATATA-GCACAC---CTA-GTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACAT-GTA--TTTCTCAAACCTTGTCGGAGTTTAGGT---------AAA-ATT---------AGTCTTGACAAATA-CGTAACG----CTCCTCTTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAA-CGTACATA-CTTAAGTCCTGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccT-TTGT--TTTTGTT---------GAT-ATTCATAATTATAGT-TTGAAAGATA-C-----A----TTC-CCT-GTGT-AAAagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctaGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-cagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--AC----A---T-------------------------------------TA--AC-AA-TTT---------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA--AAC-A---T-------ATTTTTAAGATGA------AA--AAAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCA----A--CACCATGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGTTTAATAA-CGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-A----AG-AGGTGTTA--A--CTATTACAGT------------------GTACATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTA----TAAAT----------------T------C------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCG------------------A--------------------------AGATT---TT--GTTT-TTCGACATTG-CCATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACAT-G-G--TTTCTCAAACATT-TTGG--TTTTGTT---------AAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAAC----AGCGTT--A----CGATGCCAGCT-----CCAC---TAAAA-TGATGC-AA-TTCCAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTA-T-TGTAAGGGATGT--------ATACGTCAA--TAGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATC-TGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGT-ACCTTGGGT-GT------GTCTC-CTTCTCCC-GGTTGCTTT-----TTTTG--CTATG-AAAAGGG-CATTACTA--T--C-ATTA------ATAAATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGA-ACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTA--ATT----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG----------------------------------------------GATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAC--ATAAAAATA--GC-AAATTTCAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC--GAC-A-TAT-------ATTTG-------A------AA--TGAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATC-TGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACGGT------G-CGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-A----CATTATTGATA--TGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TAAAT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--AC----A---TTTAA----TCA-----GCT-----CCACATATAAAA-TA--GCAAA-TTTCAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA--GAC-A-T-A-------TTTT--------A------AA--T-----------------GT--GAA-ATCAC-AT-T------------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACT------CAATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTG-----------------------------------------CCCTAAATT--ACTCAGTGT-TA----AT---TAA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataTT-TTGG--TTTTGTTGACATTTATAAT-ACT---------AGT-TTGAAAGATA-C-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
gi|9 : GTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-cgccacttgtaaatttggtatcccgtatctctttttctggtgtctgatgtctcgtttcttcgtattgccttttacacacac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 1111 222222222222222222222222222222 1 2222222222222222 111111 1111 11 66666666666666666666666666666666 111111 1111111 1111 222222 444444444444444444444444444444444444444 11111111111111 11 1111 2 11 111111 1111 11 111111 99999999999999999999999999999999999999999999 11 11111111 11111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 111111 222222222 222222222 333333333333 1 111 22222222222222222222222 1111 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 333 66 5 66 0000 888 222222222222222222222222222222 77 77 1 5 1 3 0 3333333333333333 5 5 666666 77 77 6666 5 5 77 33 33333333333333333333333333333333 77 0 888 999999 77 5 5 5 0 5555555 1 0000 3 6 1 6 0 333333 6 6 0 1 666666666666666666666666666666666666666 3 55555555555555 77 5 0 11 8 8 8 8 0 7777 0 5 11 6 1 666666 8 77 5 55 888 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 22222222222222222222222222222222222222222222 777 22 0 5 88888888 5 00000 8 8888 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000 666666 5 5 999 222222222 5 666666666 6 444444444444 88 3 8 0 0 000 8 11111111111111111111111 6666 8 0 0 3 4444 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . ... .. . .. .... ... .............................. .. .. . . . . . ................ . . ...... .. .. .... . . .. .. ................................ .. . ... ...... .. . . . . ....... . .... . . . . . ...... . . . . ....................................... . .............. .. . . .. . . . . . .... . . .. . . ...... . .. . .. ... .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................................ ... .. . . ........ . ..... . .... . ........................................................................................ ..... ...... . . ... ......... . ......... . ............ .. . . . . ... . ....................... .... . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 888 99 0 99 6666 888 999999999999999999999999999999 11 99 4 7 4 1 1 8888888888888888 0 7 444444 99 99 1111 7 7 99 66 99999999999999999999999999999999 99 1 111 444444 99 7 7 7 1 1111111 8 3333 2 7 0 7 8 000000 7 7 7 0 222222222222222222222222222222222222222 2 99999999999999 66 0 8 88 0 0 0 0 8 0000 4 6 00 7 0 444444 6 99 7 22 888 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 00000000000000000000000000000000000000000000 222 77 3 7 44444444 7 44444 0 4444 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 000000 0 7 666 999999999 7 777777777 7 666666666666 88 6 0 8 8 000 0 22222222222222222222222 6666 0 8 8 2 0000 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACT---T--TTCATTGA--ATTTTGA---TT--ACCATTGA-----TCTTTTTTCCACT-ATAAA--TA--GC-AA------------------------A--------TTT--------TT--AC------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACAT-GAC-A-T-----------------------------A--TAAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC--G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTGGT------G-CCCGTTTCTCCCGG-TTGCTCT----------------A-A----CG-TACTA----------ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--G----TAAATAGAATAC--TGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTG------------------AAGTTTTTTCTTTTCGAAGATTGCCCTAAATTCAACTAAGCAT-T-------AG-CA-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATAC-----TAT---CAA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATTG-ACTTTTTTCAAAC-TT-TTGG--ATTTGTT---------AATGAT---------CAGT-T-GACAGATATC-TA-------TTC-TCTTGTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA-----TAAAGC--AC-TG-CGT-AG----TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTCTT---------AAT-AT---------TAAT-TTGAC--GTA---TA-CA----TTC-TC---TGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA--GACTT-T-T-------TTTT--------A------GA--TAAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--AT----A---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : t------CATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGAATTTTTTTTTCTACATTA----------------------CCCTAAATT--ACT
gi|17 : TTAAT-CAGTACT---T--G-CATTTG--AC----A---TT--A----TCA-----GCT-----CCAT--GTAAAA-TA--GTAAA-TTTTAGCAAGTTTAAT-GAA-CAA--------TTT-
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAA-T--ACATA-----AGG-CGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAT--ATAAAA-TA--AC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA--GAC-ATT-T-------ATTT--------G------AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATC-TGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATGGT------G-CGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-A----CATTATTGTTATGT--CTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TACGT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCATAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAAT----------------------CGTAC---TTA-ATAT---------G--T----TAT------------------------G-----AAT-----CTACAT-T-A--TTTTTCAAAACTT-TTGG---TTTGTT---------AAT-AT---------GAAT-TTGACAGATA-C-AT-CGGGGCTCC-TC-TGTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAA-C--ACATAGCTT-AGT-C-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgt-CGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAA----CA-TG-TATTA--A--CTATTACAGTGTATATAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GT
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCA------------------A--------------------------AAATT--A-----TATATT----AT-G-CAATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATATA-GCACAC---CTA-GTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACAT-GTA--TTTCTCAAACCTTGTCGGAGTTTAGGT---------AAA-AT---------TAGTCTTGACAAATA-CGTAACG----CTCCTCTTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAA-CGTACATA-CTTAAGTCC-TGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccT-TTGT--TTTTGTT---------GAT-ATTCATAATTATAGT-TTGAAAGA-----TA-CA----TTC--CCTGTGT-AAAagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctaGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-cagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--AC----A---T-------------------------------------TA--AC-AA-TTT---------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA--AAC-A---T-------ATTTTTAAGATGA------AA--AAAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCA----A--CACCATGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGTTTAATAA-CGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-A----AG-AGGTGTTA--A--CTATTACAGT------------------GTACATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTA----TAAAT----------------T------C------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCG------------------A--------------------------AGATT---TT--GTTT-TTCGACATTG-CCATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACAT-G-G--TTTCTCAAACATT-TTGG--TTTTGTT---------AAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAAC----AGCGTT--A----CGATGCCAGCT-----CCAC---TAAAA-TGATGC-AA-TTCCAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTA-T-TGTAAGGGATGT--------ATACGTCAA--TAGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATC-TGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGT-ACCTTGGGT-GT------GTCTC-CTTCTCCC-GGTTGCTTT-----TTTTG--CTATG-AAAAGGG-CATTACTA--T--C-ATTA------ATAAATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGA-ACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTA--ATT----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG----------------------------------------------GATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAC--ATAAAAATA--GC-AAATTTCAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC--GAC-A-TAT-------ATTTG-------A------AA--TGAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATC-TGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACGGT------G-CGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-A----CATTATTGATA--TGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TAAAT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--AC----A---TTTAA----TCA-----GCT-----CCACATATAAAA-TA--GCAAA-TTTCAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA--GAC-A-T-A-------TTTT--------A------AA--T-----------------GT--GAA-ATCAC-AT-T------------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACT------CAATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTG-----------------------------------------CCCTAAATT--ACTCAGTGT-TA----AT---TAA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataTT-TTGG--TTTTGTTGACATTTATAAT-AC---------TAGT-TTGAAAGATA-C-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
gi|9 : GTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-cgccacttgtaaatttggtatcccgtatctctttttctggtgtctgatgtctcgtttcttcgtattgccttttacacacac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 111 1111 222222222222222222222222222222 1 2222222222222222 111111 1111 11 66666666666666666666666666666666 111111 1111111 1111 222222 444444444444444444444444444444444444444 11111111111111 11 1111 2 11 111111 1111 11 111111 99999999999999999999999999999999999999999999 11 11111111 11111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 111111 222222222 222222222 333333333333 1 111 22222222222222222222222 1111 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 333 66 5 66 0000 888 222222222222222222222222222222 77 77 1 5 1 3 0 3333333333333333 5 5 666666 77 77 6666 5 5 77 33 33333333333333333333333333333333 77 0 888 999999 77 5 5 5 0 5555555 1 0000 3 6 1 6 0 333333 6 6 0 1 666666666666666666666666666666666666666 3 55555555555555 77 5 0 11 8 8 8 8 0 7777 0 5 11 6 1 666666 8 77 5 55 888 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 22222222222222222222222222222222222222222222 777 22 0 5 88888888 5 00000 8 8888 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000 666666 5 5 999 222222222 5 666666666 6 444444444444 88 3 8 0 0 000 8 11111111111111111111111 6666 8 0 0 3 4444 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . ... .. . .. .... ... .............................. .. .. . . . . . ................ . . ...... .. .. .... . . .. .. ................................ .. . ... ...... .. . . . . ....... . .... . . . . . ...... . . . . ....................................... . .............. .. . . .. . . . . . .... . . .. . . ...... . .. . .. ... .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................................ ... .. . . ........ . ..... . .... . ........................................................................................ ..... ...... . . ... ......... . ......... . ............ .. . . . . ... . ....................... .... . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 888 99 0 99 6666 888 999999999999999999999999999999 11 99 4 7 4 1 1 8888888888888888 0 7 444444 99 99 1111 7 7 99 66 99999999999999999999999999999999 99 1 111 444444 99 7 7 7 1 1111111 8 3333 2 7 0 7 8 000000 7 7 7 0 222222222222222222222222222222222222222 2 99999999999999 66 0 8 88 0 0 0 0 8 0000 4 6 00 7 0 444444 6 99 7 22 888 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 00000000000000000000000000000000000000000000 222 77 3 7 44444444 7 44444 0 4444 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 000000 0 7 666 999999999 7 777777777 7 666666666666 88 6 0 8 8 000 0 22222222222222222222222 6666 0 8 8 2 0000 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACT---T--TTCATTGA--ATTTTGA---TT--ACCATTGA-----TCTTTTTTCCACT-ATAAA--TA--GC-AA------------------------A--------TTT--------TT--AC------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAATG--ACAT-GAC-A-T-----------------------------A--TAAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC--G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTGGT------G-CCCGTTTCTCCCGG-TTGCTCT----------------A-A----CG-TACTA----------ATTAC------TC------ATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--G----TAAATAGAATAC--TGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTG------------------AAGTTTTTTCTTTTCGAAGATTGCCCTAAATTCAACTAAGCAT-T-------AG-CA-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATAC-----TAT---CAA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATTG-ACTTTTTTCAAAC-TT-TTGG--ATTTGTT---------AATGAT---------CAGT-T-GACAGATATC-TA-------TTC-TCTTGTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA-----TAAAGC--AC-TG-CGT-AG----TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTCTT---------AAT-AT---------TAAT-TTGAC--GTA---TA-CA----TTC-TC---TGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGTCA-A-CAA--------TTT-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-TG--ACA--GACTT-T-T-------TTTT--------A------GA--TAAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTTT---T--G----TTG--AT----A---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : t------CATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGAATTTTTTTTTCTACATTA----------------------CCCTAAATT--ACT
gi|17 : TTAAT-CAGTACT---T--G-CATTTG--AC----A---TT--A----TCA-----GCT-----CCAT--GTAAAA-TA--GTAAA-TTTTAGCAAGTTTAAT-GAA-CAA--------TTT-
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAA-T--ACATA-----AGG-CGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAT--ATAAAA-TA--AC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-TG--ACA--GAC-ATT-T-------ATTT--------G------AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATC-TGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATGGT------G-CGC-TTTCTCCTGGGTTGTTTT-----CTT----CAATG-A----CATTATTGTTATGT--CTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TACGT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCATAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAAT----------------------CGTAC---TTA-ATAT---------G--T----TAT------------------------G-----AAT-----CTACAT-T-A--TTTTTCAAAACTT-TTGG---TTTGTT---------AAT-AT---------GAAT-TTGACAGATA-C-AT-CGGGGCTCC-TC-TGTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAA-C--ACATAGCTT-AGT-C-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgt-CGC-TTTCTCCTGGGTTGCTTT-----CTTATGCCTATGAA----CA-TG-TATTA--A--CTATTACAGTGTATATAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GT
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCA------------------A--------------------------AAATT--A-----TATATT----AT-G-CAATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATATA-GCACAC---CTA-GTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACAT-GTA--TTTCTCAAACCTTGTCGGAGTTTAGGT---------AAA-AT---------TAGTCTTGACAAATA-CGTAACG----CTCCTCTTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAA-CGTACATA-CTTAAGTCC-TGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccT-TTGT--TTTTGTT---------GAT-ATTCATAATTATAGT-TTGAAAGA-----TA-CA----TTC--CCTGTGT-AAAagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctaGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-cagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTACT---T--G-CATTTG--AC----A---T-------------------------------------TA--AC-AA-TTT---------TAGT-G-AACAA--------TTT-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-TA--ACA--AAC-A---T-------ATTTTTAAGATGA------AA--AAAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCA----A--CACCATGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGTTTAATAA-CGC-TTTTTCCTGGGTTGCTTTCTATGCTT----AAATG-A----AG-AGGTGTTA--A--CTATTACAGT------------------GTACATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTA----TAAAT----------------T------C------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCG------------------A--------------------------AGATT---TT--GTTT-TTCGACATTG-CCATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACAT-G-G--TTTCTCAAACATT-TTGG--TTTTGTT---------AAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTACTGACTCAG-CATCTATAAC----AGCGTT--A----CGATGCCAGCT-----CCAC---TAAAA-TGATGC-AA-TTCCAGCAAGTTTAGT-T-G-CAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTA-T-TGTAAGGGATGT--------ATACGTCAA--TAGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATC-TGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGT-ACCTTGGGT-GT------GTCTC-CTTCTCCC-GGTTGCTTT-----TTTTG--CTATG-AAAAGGG-CATTACTA--T--C-ATTA------ATAAATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGA-ACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTA--ATT----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG----------------------------------------------GATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTACTC--T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CAAC--ATAAAAATA--GC-AAATTTCAGCAAGTT-AGT-G-G-CA---------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-TG--ACC--GAC-A-TAT-------ATTTG-------A------AA--TGAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATC-TGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACGGT------G-CGC-TTTCTCCTGGATTGCTTT-----CCT----CAATG-A----CATTATTGATA--TGCCTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TAAAT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAAT---T--G-CATTTG--AC----A---TTTAA----TCA-----GCT-----CCACATATAAAA-TA--GCAAA-TTTCAGAAAG-TTAGT-GAA-TAA--------TTTAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-TG--ACA--GAC-A-T-A-------TTTT--------A------AA--T-----------------GT--GAA-ATCAC-AT-T------------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACT------CAATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTG-----------------------------------------CCCTAAATT--ACTCAGTGT-TA----AT---TAA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataTT-TTGG--TTTTGTTGACATTTATAAT-AC---------TAGT-TTGAAAGATA-C-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
gi|9 : GTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-cgccacttgtaaatttggtatcccgtatctctttttctggtgtctgatgtctcgtttcttcgtattgccttttacacacac
blockSeqs : A G GACATAC AATATGA G G T ATT . T G GGC GT . TCA T GAC CA . TA . GCG ACGATGCCAGCTCCAC AA AT A A C T TGCAAATACAATT A C TTTCCT CA AG AGT T . TT TC TATTGTAAGGGATGTATACGTC CT AAT A TG . T G AATGATA T ATGT A T G . TTAATA T . G TTTTGCTATGAAAAGGGCATTACTAT T AGTGTATCTATAGT TG A A . C . T TGAT A T GA . G TCCTGG A . G AC GAG AATT T T GC A T T T A G CG T G GCATAT TA C TA TTA C AATTTTTTTTTCTACATTACCC A CA A TCGACATT C TTA . CATA T GTTTAAACTATACCTGCATATATACTATATATATTATATTCATAAACTATATATTAACGAAGAAAATAGT . GTA C G AGT GACATTTAT . TCATAATTA C CATCGGGGC CT T C GA A ATTTCAACGTACATACTTA GCG C A AGCC C . . TTAA AGAG GCC GG
blockSeqs : A G . . C . . TT . . . G . . A T C . . . . . TAATCAGCTCCACATA A . A . T T CAACAA . . . . . CA . . . . ATATTTTTAAGATGA . A T . . . . ATGT C TGT A . G . . . . G CTATGCTTAAATGAAGAGGTGTTAA T AGTGTATCTGTAGT GT C G . . . . . . T . . C . C . . C . . T . CC A . T . . . . . . . . C . . C ACCA A CA . TATA . AAT . AT . CTATTAAACGTATTAATATAGCACACCTAGTATAAATAGAAACCTACAAGGTGAAATTTAATG . GA C . T . . . . CGTAACG T C . G . ATTTCAACACATAGCTT TCC . A AG . . . T . . .
blockSeqs : A G . . C . . . . . . A . . A T . . . . . . ATCAGCTCCATG A . . . C T GAACAA . . . . . C . . . . ATATATTTGA . A T . . . . ATGA T TGC C . C . . . . G CTTATGCCTATGAACATGTATTAA T ATAAATAGT TT C A . . . . . . . . . G . T . . C . . G . CC G . T . . . . . . . . C . . C ACCC A CA . TATA . A . TA . CGTACTTAATATGTTATG . TA C . T . . . . TACA T . . A . ATATTTCAATACATA TC . A . . . T . .
blockSeqs : A G . . C . . . . . . A . . A T . . . . . . ATGAGCTCAATA A . . . C T GAACAA . . . . . T . . . . TTTTTTTTA . G T . . . . A T TGC A . G . . . . G CTTCAATGACATTATTGTTATGT T AGT . C . . . . . . . . . . A . C . . C . . T . CT A . T . . . . . . . . T . . C CCC T . . TAT . T . AT . GG A . T . . . . TACA . . . A . ATCTT TC .
blockSeqs : A C . . G . . . . . . A . . A T . . . . . . ATGAGCTCAACA A . . . C T GAATAA . . . . . C . . . . ATTTATTTG . A . . . . . . . T A . T . . . A CCTCAATGACATTATTGATATGC . . . . . . . T . . C . TC C . T . . . . . . . . C . . G A A . . TAA . A . T . . . .
blockSeqs : T A . . C . . . . . . G . . A T . . . . . . . . . . . C . GGCAA . . . . . T . . . . ATATTTTA . . . . . . . . . . . C . . T . TC A . T . . . . . . . . T . . C A A . . AAT . A . . . .
blockSeqs : A G . . C . . . . . . G . . A . . . . . . . . . GGCA . T . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . C . . T . . . . . . A . . . . C . . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : A**** **** ATNAGCTCNACG****************** A* GAACAA********** C*** ** ATNTATTTGA********************** T***** TGC* CTTTGCCNATGAACATTATTGATGT************** AGTAGTAGT***** A* ** C* CC ** ****** ACC***************************************** A** CA TATA**** ***** GA**** A** ATTTCAACACATACTT******* TC**
originalCons : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TT--A----TGA-----GCT-----CCAC--ATAAAA-TA--GC-AA-TTTCAGCAAGTTTAGT-G-G-CAA--------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-TG--ACA--GAC-A-T-T-------ATTT--------A------AA--TAAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTT-----CTT----CAATG-A----CG-TATTGTTA--T--CTATTACAGTGTATCTATAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTG------------------A----------------------CCCTAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
finalCons : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCAA----TTTATTAATTCGGTACT---T--G-CATTTG--AC----A---TTATNAGCTCNACG------------------TAAAA-TA--GC-AA-TTTCAGCAAGTTTAGTGAACAA----------TTT-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTTC---ATCT-GGTAAA-TG--ACA--GACATNTATTTGA----------------------AA--TAAAAA--TAAT-----GGT--GGA-ATCAC-AT-TATCAA-TGA--CATCTGC-GTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTTCTTTGCCNATGAACATTATTGATGT--------------CTATTACAGTAGTAGT-----ATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTTC-AA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTGACC-----------------------------------------TAAATTA--CTCAGTAT-TTATA----G-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACATGA----TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGGA--GCTTGTACAG-ACAATTTCAACACATACTT-------AGTC--TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111 1111111111 1111 22222222222222 222 1 11111111 111111 1111 22222222 111111111 11111111 111111 1111111 1111 222222 8888888888888888888888888888888888888888888888888888888888 11 1111 2 11 111111 1111 11 111111 6666666666666666666666666666 1111111 11111111 11111 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 111111 222222222 222222222 333333333333 1 111 22222222222222222222222 1111 2222 1 1 1 11111 2222 111 11
lowQualScore : 3 9 0000000 0000000 1 3 3 999 3 7 3 888 55 4 88888 0 3 9999999999 66 5 66 0000 888 55555555555555 3 222 5 5 77 1 5 1 3 0 77777777 66 5 5 666666 77 77 6666 5 5 00000000 888888888 8 1 77777777 55 888 999999 77 5 5 5 0 5555555 1 0000 3 6 1 6 0 333333 6 6 0 1 1 8888888888888888888888888888888888888888888888888888888888 77 5 0 11 8 8 8 8 0 7777 0 5 11 6 1 666666 8 77 5 55 888 0000 2 5 0 44 2 4 1 4 4 4 11 4 4 555555 55 7 66 777 1 6666666666666666666666666666 6666666 0 5 88888888 5 00000 8 8888 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000 666666 5 5 999 222222222 5 666666666 6 444444444444 88 3 8 0 0 000 8 11111111111111111111111 6666 8 0 0 3 4444 0 0 0 88888 1111 777 88
lowQualScore : . . ....... ....... . . . ... . . . ... .. . ..... . . .......... .. . .. .... ... .............. . ... . . .. . . . . . ........ .. . . ...... .. .. .... . . ........ ......... . . ........ .. ... ...... .. . . . . ....... . .... . . . . . ...... . . . . . .......................................................... .. . . .. . . . . . .... . . .. . . ...... . .. . .. ... .... . . . .. . . . . . . .. . . ...... .. . .. ... . ............................ ....... . . ........ . ..... . .... . ........................................................................................ ..... ...... . . ... ......... . ......... . ............ .. . . . . ... . ....................... .... . . . . .... . . . ..... .... ... ..
lowQualScore : 4 6 8888888 8888888 8 3 1 666 3 3 6 555 55 0 77777 2 2 1111111111 99 0 99 6666 888 44444444444444 0 666 7 7 99 4 7 4 1 1 99999999 99 0 7 444444 99 99 1111 7 7 77777777 777777777 6 9 33333333 99 111 444444 99 7 7 7 1 1111111 8 3333 2 7 0 7 8 000000 7 7 7 0 0 7777777777777777777777777777777777777777777777777777777777 66 0 8 88 0 0 0 0 8 0000 4 6 00 7 0 444444 6 99 7 22 888 6666 0 0 1 88 0 0 2 0 0 0 00 0 0 555555 55 4 11 888 1 9999999999999999999999999999 1111111 3 7 44444444 7 44444 0 4444 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00000 000000 0 7 666 999999999 7 777777777 7 666666666666 88 6 0 8 8 000 0 22222222222222222222222 6666 0 8 8 2 0000 0 0 0 55555 2222 555 33
consensus : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTAC------T---T--GCATTT-G--A----CA---TT--A---TNA-----GCTCCAC--ATA-AAA-TA--GC-AA-TTTCAGCAAGTTTAGT----GA-ACAATT--T-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-T--------GAC-------A-GACATNTATT-----TG-AAAT-AAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTTCTT-TG-C--AATGAA-----CAT-TATTG--AT--GT---CTATTACAGTG-----GTAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTGA-----------------------CC-TAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
Reference ( family-635 ) : NNGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACA-------GA-------GATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTCGGTAC------T---T--GCATTT-G--A----CA---TT--A---TNA-----GCTCNAC--GTA-AAA-TA--GC-AA-TTTCAGCAAGTTTAGT----GA-ACAATT--T-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--C-ATCT-GGTAAA-T--------GAC-------A-GACATNTATT-----TG-AAAT-AAAAA--TAA-----TGGT--GGA-ATCAC-AT-TATCAA-TGA--CATC-TGCGTGGGGAAACCCAAAGTTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGT------G-CGC-TTTCTCCCGGGTTGCTTTCTT-TGCC--NATGAA-----CAT-TATTG--AT--GT---CTATTACAGTA-----GTAGTATTNNACGTACATGTA-AATTATT-TTGCA-CTTTT-CAAA-TTTG----TAAATAGAATAC--TGG-TGCT------CATTTNAAAA--T-TTACTTTT-CAA---AAATAATATT----TATATTTC-TTTAAGCCAATAATTA-ATTTCGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTGA-----------------------CC-TAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAATCGNTTAAACG-----ATAC--GCGTAC---CTA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AAT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTGTT---------AAT-AT---------TAGT-TTGACAGATA-C-TA-CG----TTC-TCTTGTGT-AAACTAACTTTATGG-A-GCTTGTACAG-ACA--ATTTCAA-C--ACATA-CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACATCAAAAAG--CAGACTGGG-TTCACA-GAGAGCA-GTT-T---AGA----GCCAGTCCG---AT--GTAGTAAGATAA
gi|1 : CA-A---TGACACA-TA--GA--TTAGATATGAAGC-ATCA--AAGTTTATTAAT-CGGAACTTTTCAT---T--GAATTTTG--ATTACCA---TT--GATCTTT-----TTTCCAC---TATAAA-TA--GC-A---------------------------AATT--T--------TT--AC------GTGACGTTG--ATGA--TACA-C-ATAC-GGTAAAAT--------GAC-------ATGACAT---------------AT-AAAAT--TAACCGTGTGGT--GGAGATCAC-AT-TACAAG-TGA--CAAC--G-GTGGGGAA-CCCAA-GTTTA-CAGAATCCAGTAGTTATGTACTACTGGGTGGT------G-CCCGTTTCTCCCGG-TTGCTCT--------------AA-----CGT--ACTA--AT--------TACT---------------CATTGAACGTA--TGTACAATTATTGTTGCA-CTTTCGCAAA-A--G----TAAATAGAATAC--TGGGTGCT-------ATTAAAAAAATT-TTACTTTT--AA---AAATAAT-------T-TATTTC-TTTAAGC-AA-AATTA-ATTTCGAAA-TAT-TTT-T-CTTTCTAATTTCTTAC-CT-TTGACAA-----GC--ATGAA-AT--AAG---ACTTTTGAAGTTTTTTCTTTTCGAAGATTGCCC-TAAATTCAACTAAGCAT-T-------AG-CA-TA--A--TGCTTGAC-AT-TG-AAAATTGCTTAAACG-----ATAC-----TAT---CAA-ATAT---------A--TAGAATATATAT-----AAGG---------A-G-----AATATGAACAACATTG-ACTTTTTTCAAAC-TT-TTGG--ATTTGTT---------AATGAT---------CAGT-T-GACAGATATC-TA-------TTC-TCTTGTGT-AAACTAAC-TTATGG-ATGCTTGTACAG-ACA-----TAAAGC--AC-TG-CGT-AG----TGC--TTTT-TATTTCCTG-AC-TCAAGA-------GCTGGG-ATCACATGAGTACAGGTTAT---AGA----GCCAGTCCG---A
gi|10 : tgtT-----CAACAT-G-A--TTTCTCAAACCTT-TTGG--TTTTCTT---------AAT-AT---------TAAT-TTGAC--GTA---TA-CA----TTC-TC---TGT-AAACTAACTTTGTGG-G-GCTTGTACAG-ACA--AT---------------CTT-AGT-C-TGTCGTTTT-TAATTCCTGTACAagatggttacaggaagtggtcaaaactgacatagcaatgcaccgtcaatgactaaagagtccgcgactttacagagggatgggtttttcaagctagttattataaaatataacaaacgtatcgcccaatctgtaaattttggtaatctaggtatctatctgtttctgggtcttcgttttcgtatgtggcttacagatcacaccc
gi|11 : GTGTAAAAG-CAATACGAAGAAACGAGA-ACCAGACAT-----ACA-------CC-------GATACCAAAT-ACAA-G---T-GCG-A-TG--ACGTTT-GTTGT
gi|12 : tatcttacacgagagtgtatcttcaagctagtattgttaaatatcaTTCAGCAAGTTTAGT----CA-ACAATT--T-AATT-TCTTCAAC------GTAACCTTG--GTGA--CAT--C-ATCT-GGTAAA-T--------GAC-------A-GAC-TTTTTT-----TT-AGAT-AAAAA--AAA-----AGAT--AGA-ATTAT-AT-TGTCAA-ac
gi|13 : AAGAAACGAGACACCAGACAC----------------A-------GATACGAGAT-ACCA-ATT-T-ACA-AGTGGCGA--TC-GCT-CGAGCCT-TTG--A--TTGACTACTTTTGTTT------T---T--G---TT-G--A----TA---TT--
gi|14 : atataGTGTAAAAGGCAATACGAAGAAACGAGACACCAGATACGAGAAACAGACATACGA-------GATGCCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTttacacacatcc
gi|15 : t------CATTTAAAAA--T-TTACTTTA-CAA---AAATAATATT----TATATTTC-TTTAAGGCAATAATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTGC-CT-TTGACA------GC--Ac
gi|16 : A-ATTTTGAAA-TATATTT-T-CTTT--ATTCTTTTAT-CT-TTGACAGCATATGC--ATGAACAT--AAA---ACTTTTGA-----------------------
gi|17 : TTAAT-CAGTAC------T---T--GCATTT-G--A----CA---TT--A---TCA-----GCTCCAT--GTA-AAA-TA--GTAAA-TTTTAGCAAGTTTAAT----GA-ACAATT--T-atttttttttctacattaccctaaattact
gi|18 : AACTAACTTTGTGGGA-GCTTGTACAGAACAATATTTCAA-T--ACATA-----AGG-CGTTTCGTTTTCTAATTCCTGT
gi|19 : ACGAGACACCTGGTACGAGAAACA-------GA----------------T-ACCA-A---T-ATA-A-TA--AA--TT-ATTATAAGGCTATCA--A--TTTATT
gi|2 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAAACA-------AA-------GATACCAGAT-ACCA-A---T-ACA-A-TA--AA--TT-GTTATGAAGCTATCA--A--TTTATTAATTTGGTAC------T---T--GCATTT-G--A----CA---TT--A---TGA-----GCTCAAT--ATA-AAA-TA--AC-AA-TTTCAGCAAGTTTAGT----G--GCAATT--T-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCT-GGTAAA-T--------GAC-------A-GACATTTATT-----TG-AACTCAAAAA--TAA-----TGGT--GAA-ATCAC-AT-GATCAA-TGT--CATC-TGTGTAAGGAAACCCAAAGTTTA-CAGAGCC-ATTATTTATGAAATCTTGGATGGT------G-CGC-TTTCTCCTGGGTTGTTTTCTT----C--AATG-A-----CAT-TATTGTTAT--GT---CTATTACAGTGTATCTATAGTATTTGACGTAAATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TACGT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTATT-CAA---AAATAATATT----TATATTTC-TTGAAGCCAATAATTA-ATTTTGAAA-TTTATAT-T-TTTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAACAT--AAG---ACTTTTGA-----------------------CCATAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGCT-GAA-AT-TG-AAAAT----------------------CGTAC---TTA-ATAT---------G--T----TAT------------------------G-----AAT-----CTACAT-T-A--TTTTTCAAAACTT-TTGG---TTTGTT---------AAT-AT---------GAAT-TTGACAGATA-C-AT-CGGGGCTCC-TC-TGTGT-AAACTAACTTTATGT-A-GCTTATACAG-AAA--ATTTCAA-C--ACATAGCTT-AGT-C-TGTCGTTTT-TAAT--CCGTACATCAAACAG--CAGACTGGG-TCCACA-GAGAGCA-CCT-T---AGC----GCAAGTCTG---AT--GTGGAAAGATAAca
gi|20 : ggGTGTAAAAGGCAATACGAAGAAACGAGACAACAGATACGAGAAACA-------GA-------GATACCAGAG-TCCA-A---
gi|21 : tgt-CGC-TTTCTCCTGGGTTGCTTTCTTATGCC--TATGAA-----CATGTATTA--A--------CTATTACAGT------GTA-TAT
gi|23 : aa-ATTTTGAAA-TATATTT-T-CTTT--CATTTCTTAC-CT-TTGACA------GC--GTat
gi|24 : GTGTAAA-GGCAATACGAAGAAACGAGACACCAG
gi|3 : gtgtTTT-CAAGAGAAATAAAATT----TGGATTTCTTTTAAGCCAAT-ATTA----TTGAAATTATATCT-TGCTGC--ACTTCCTTACTCTGTTGAC-------GCTAATGAGCATTAAAT---ACTT
gi|3 : aattctgaacAATAT--AGGTTAACTTTCAA---------------------------AAATT--A-----TATATT----AT-G-CAATATTA--TGCT-GAACATATGTAAAATCTATTAAACGTATTAATATA-GCACAC---CTA-GTAT---------AAATAGAA-ACCTAC-----AAGGTGAAATTTAATG-----AAT-----CAACAT-GTA--TTTCTCAAACCTTGTCGGAGTTTAGGT---------AAA-AT---------TAGTCTTGACAAATA-CGTAACG----CTCCTCTTGTGTCAAACTAACTT-ATGG-A-ACTTGTACAG-ACA--ATTTCAA-CGTACATA-CTTAAGTCC-TGTCGTTTT-TAATTCCTGTACATCTAAAAGCCCAGACTGGGCTTCACA-GAGAGCA-GTT-TTAAAGA----GCCAGTCCG---AT--GTAGTAAGATAAgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccT-TTGT--TTTTGTT---------GAT-ATTCATAATTATAGT-TTGAAAGA-----TA-CA----TTC--CCTGTGT-AAAagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|3 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctaGTGTAAAAGGCAATACGAAGAAACGAGACACCAGACACCAGAAACA-------GA-------GATACGAGAT-ACCA-A---T-cagtcaatcgtcacttgcaaaattggtatctcgtatctctgtttctggtgtctggtgtctcgtttcttcgtattgccttttacacacacc
gi|4 : aattctgaactttcaagagaaataaaatttggatttcttttaagccaatattattgaaattatatcttgctgcacttccttactctgttgacgctaatgagcattaaatacttgtatagtaacgaatagttatgttatattcgaaattaagtcaccaatataggttaactttcaaaaattatatattatgcaatattatgctgaacatatgtaaaatctattaaacgtattaatatagcacacctagtataaatagaaacctacaaggtgaaatttaatgaatcaacatgtatttctcaaaccttgtcggagtttaggtaaaattagtcttgacaaatacgtaacgctcctcttgtgtcaaactaacttatggaacttgtacagacaatttcaacgtacatacttaagtcctgtcgtttttaattcctgtacatctaaaagcccagactgggcttcacagagagcagttttaaagagccagtccgatgtagtaagataaagttcaaaaattgaccatgttctgccacttaaatacaaacgcatcgtccagggacacgctatttacacagggaatgtatctttcaaactataattatgaatatcaacaaaaacaaacagtcaatcgtcacttgcaaaGTGTAAAAGGCAATAAGATGAAACGAGACACCAGATACAAAAAATA-------GAAATATGAGATACCAGAT-ACCA-A---T-ACA-A-TG--AA--TT-ATTATGAAGCTCTCA--A--TTTATTCATTCGGTAC------T---T--GCATTT-G--A----CA---T--------------------------------TA--AC-AA-TTT---------TAGT----GA-ACAATT--T-AGTT-GCTTCAAC------GTGACCTTG--GTGA--CTT--C-CTCT-GGTAAA-T--------AAC-------A-AACATATTTTTAAGATG-AAAA-AAAAG--TAA-----TGAT--GGA-ATCAC-AT-TATCA----A--CACCATGTGTGGGGAAATGCAAAGGTTA-CAGAGTC-AGTATTTATGTAATCTTGGGTGGTTTAATAA-CGC-TTTTTCCTGGGTTGCTTTCTA-TGCTTAAATGAA-----GA------G--GT--GTTAACTATTACAGT------------------GTACATGTG-ATTTATT-TTGCA-CTTTT-TAAA-TTTA----TAAAT----------------T------C------AAA--T-ATACTTTT-TAA---AAATAATATT----TATATTTC-TTTAAGCTAATGATTA-ATTTTGAAA-TATATTT-T-CTTT--AATTTCTTAC-CT-TTGACA------AC--ATCAACAG--AAG---AGTTTCGA---------------------------AGATT---TT--GTTT-TTCGACATTG-CCATA--AATTACT-CAG-TA-TG-AAAAT-GTTTAAACT-----ATACCTGCATATATACTATATATATTATATTCA--TAAACTATATATTAACGAAGA---------A-AATAGTAAT-----CAACAT-G-G--TTTCTCAAACATT-TTGG--TTTTGTT---------AAT-Aacacc
gi|5 : tgtACGAGAG--TAGATCC---AAACG-------GA-------GAT----GATGACTATA---T-ATATA-TG--AC--TA-G--ATGCA-CTATAATCA--TTTATTTTTTTGGTAC------TGACTCAGCATCT-ATAA----CAGCGTT--A---CGATGCCAGCTCCAC---TA-AAA-TGATGC-AA-TTCCAGCAAGTTTAGTTGCAAATACAATTCTT-AATTCGACTCAACTTTCCTGTG-CCTTGCAACGGAGCTTAGT-ATCT-G-TAAA-TTTTACATCAACTATTGTAA-GGGATGTATA-----CGTCAAT-AGAAA--TAG-----------GGA-ATCAC-AT-TATCAAATGATACATC-TGCG---GGAACCCCAAAGTTTGTCAGACTC-AGTATTTATGT-ACCTTGGGT-GT------GTCTC-CTTCTCCC-GGTTGCTTTTTT-TG-C--TATGAAAAGGGCAT-TAC-----T--AT---C-ATTA-ATAA-----ATAGTATTGTACGTACA-GT--AATTACT-TTGCACCTTTT-CAAATTTTGTGATTAAATAGGA-ACGATGA-TCCTTCCTGGTATCTTGCAT--TGTTAATTTTACGG---AACTA--ATT----TA-----C-TTTCAG---ATAAATATATTTC-ATA-TTTATTCAT-CTTTCGAAATTCTGAA-CT-TT--CA------AG--A-GAA-AT--AAA---A--TTTG-----------------------------GATT--TCT-----T-TT----A-AGCCAATA--T--TATT-GAA-AT-T
gi|6 : GTGTAAAAGGCAATACGA--------GACACCAGATACGAGAA-CA-------GA-------GATACCAGAT-ACCA-A---T-ACA---T---AA--TC-ATTATGAAGCTATCA-----TTTATCAATTCGGTAC------TC--T--GCATTT-G--A----CA---TT--A---TGA-----GCTCAAC--ATA-AAAATA--GC-AAATTTCAGCAAGTT-AGT----GG--CA-TT--T-AATT-GCTTCAAC------GTGACCTTG--ATGA--CTT--T-ATCTTGGTAAA-T--------GAC-------C-GACATATATT-----TG-AAAT-GAAAAATTAA-----TGGTTGGGA-ATCACTATGCATCAA-TGA--CATC-TGCGTGGGGAAACCCCAAGTTTA-CAGAGTC-ATTATTTATGTAATATTGGACGGT------G-CGC-TTTCTCCTGGATTGCTTTCCT----C--AATGA------CAT-TATTG--ATATGC---CTATTACAGTGTATCTGTAGTATTTTACGTACATGTA-AATTATT-TTACA-CTTTT-CAAA-TTTG----TAAAT-GAATAC--TGG-TGCT------CATTTCAAAA--T-TTACTTTT-CAA---AAATAATATT----TACATTTC-TTTAAGTCAATCATTA-ATTTCGAAA-TATATTT-T--TTT--AAGTTCTTAC-CT-TTGACA------GC--ATGAATAT--AAG---ACGTTTGAC----------------------CC-TAAATT--ACTCAGTAT-TT----ATAG-CAATA--A--TGC
gi|7 : -------GA-------GATACTG--T-ACCA-A---T-ACA-A-TA--AA--TT-ATTATGTAGCTATCA--A--ATTATTCAATCGGCAA------T---T--GCATTT-G--A----CA---TTTAA---TCA-----GCTCCACATATA-AAA-TA--GCAAA-TTTCAGAAAG-TTAGT----GA-ATAATT--TAAATT-ACTTCAGC------ATGACCTTG--ATGA--CTT--CAATCT-GGTAAA-T--------GAC-------A-GACA--TATT-----TT-AAAT------------------GT--GAA-ATCAC-AT-T------------------TGTGGGGAAATGCAAAGTATA-TTAATTG-AGTAT
gi|7 : gtaaacaagacacccattcattcaaatcaacgtatac-TACT------CAATT---AA--T-ATACTTTT-TGA---AAATAATATTAATTTATATTTC-TT-AAGTCAATAGTTT-ATTTTGAAA-TGTACTT-T-CTTT--ATTTTTTT---TT-TCGACA------------------------------TTGC-----------------------CC-TAAATT--ACTCAGTGT-TA----AT---TAA-A--A--TGCaaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggttactcaattaatatactttttgaaaataatattaatttatatttcttaagtcaatagtttattttgaaatgtactttctttattttttttttcgacattgccctaaattactcagtgttaattaaaatgcat
gi|8 : gtaaacaagacacccattcattcaaatcaacgtatacgagatactgtaccaatacaataaattattatgtagctatcaaattattcaatcggcaattgcatttgacatttaatcagctccacatataaaatagcaaatttcagaaagttagtgaataatttaaattacttcagcatgaccttgatgacttcaatctggtaaatgacagacatattttaaatgtgaaatcacatttgtggggaaatgcaaagtatattaattgagtataaatggagactgagaataagtgtcactagtattgcttgacatgttttgattgtgtttgatttatgagttgatttatggtgtattagtttgaaagctacaacacccaaggtACTGGG-TTCACA-GAGAGCA-GTT-T---AGAAGAGGCCAGTTCAGCCATGGGTAGTAAat
gi|9 : tcttgtcatttagcacagtacataTT-TTGG--TTTTGTTGACATTTATAAT-AC---------TAGT-TTGAAAGATA-C-tgaagttctccaaaatgacaccgttggattaccacttgttaagggacggggatcctcaaactgacaagcagtcagtgtggaatcatattggagcacaagtgggtgatgtatctcttgctaaaattagtattatgatatcaactaataccacaaaatagagtcatcgccctgtacaccctgataaaatgttggttatgactggtaaggtttcctgaccgttcttatcgtgtttcattgtcgttattggtgtcctagtctctcgtactttgccttttactcaacaaacacacc
gi|9 : GTGTAAAAGGCAATACGAAGAAACGAGACATCAGACACCAGAAAAA-------GA-------GATACGGGAT-ACCA-AATTT-ACA-A-cgccacttgtaaatttggtatcccgtatctctttttctggtgtctgatgtctcgtttcttcgtattgccttttacacacac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TATTTTCGACATTGCCCTAAATTACTCACTAATAGTATTAATTAAAATGC