lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 999999 1 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 11 3333 1 22222 1 1111 1 1 22222222 1 888888888888888888888 11 1 11 1 111111 555555555555555555555555555555555 4444444444444444444444 222222 6666666666666666666666666 222 1
lowQualScore : 6 7 111111 6 7 6 5 4 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 22 66 0 33 88 0000 6 3 44444 0 6 6 7777 1 0 66 2 99999999 8 5 777777777777777777777 44 44 0 3 33 0 5 666666 222222222222222222222222222222222 3333333333333333333333 333333 6 5 6666666666666666666666666 66 000 1 4 4 4 66 0 4 888 55 6
lowQualScore : . . ...... . . . . . ...................................................................................................................... . .. .. . .. .. .... . . ..... . . . .... . . .. . ........ . . ..................... .. .. . . .. . . ...... ................................. ...................... ...... . . ......................... .. ... . . . . .. . . ... .. .
lowQualScore : 0 0 000000 0 0 0 5 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88 00 2 88 22 0000 5 5 22222 0 0 0 0000 5 0 88 5 00000000 8 5 888888888888888888888 22 22 0 2 88 3 0 444444 333333333333333333333333333333333 5555555555555555555555 000000 0 0 2222222222222222222222222 11 222 0 4 1 1 99 2 1 888 66 0
consensus : TTTCTAGAAACACT----GCATTTCAATGTTCCTCCANGTT---NAAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCACA---ACTAC--TACACCATC-----------CTCTAAAAC-----------CGC-A----TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTT-GTTTCTAAAATNTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGTA--N------------C-----GCTCCGTGAGAAAGTGAAAACGAAA-GTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAA--CTTAC--T---TTAAACAAGTCAAAATTGAA-----------AGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAACAGACGGACCTAATA--------A---CCG----------CC--CCCTTT-T-CTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
Reference ( gi|1 ) : TTTCCAGTAACAATTAATGCATTCCAAAGTCCCTCCATGTT---AAAAACAGAATGCAAAAACTTTA--------TC--AAG-----CAGGTGTCTATAATTACTATAGTACACCATC-----------C-----AAT-----------CGC-A----TATTTGCCCATAG-AATTGT--TGTTTTCTCTTTTTGGTTTCTATAATTTTCCCTTTA-ACGGGATTCCAGATACC----TCAGTAA-ACAAGAAATCCT--------CTAATACAATAAATGTA--A------------C-----ACTCTGTGAGAAAGCAAAAACGAAA-GTTTAC--CAAGTCGTACATCGAATGACTCAACTA------ATTTCCAAATATCGTC----TGATGAACAA--ATTAC--T---TTAAACAAGTCAAAATTGAA-----------AGTTAATTATTTCCTGTTTA------CACTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAATACACAGACCTAATA--------AA-ACCA----------CC--CCCTTT-C-CTAATTT-TCTAAGCACTC--GGAGCGCTCAAT---AGGACAAATACAGTAATGCATAAAAAAAAATTTCCTGTATATAAAAC
gi|10 : TTTCTAGAAACACT----GCATTTCAATGTTCC-CCAAGTT---TTAAA---------AAGACT---------------AAG-----CACGTGTCCA-----GCTAC--TACACCATC-----------CTCTAAGAC-----------AGC-A-----AT-----CATAG-GATTGT--TGTTCTCTCTTT---GTTTCTAGAATTTGTTCCTTA-ATGGGGTTCTAGATATC----
gi|6 : tTCCATGTTTTCAAAAACA---TGCAACGACTTTA--------CCTTGAG-----CACATGTTCATA-----TATACTACACCATT-----------C-----AATAAAACTGCAATCAC-A----TATTTCCCCACAG-GATTATAATGTCCTCTCTTTTTG-TTTCTAAAATATGTCCTTTA-ATGGGATTCCAGATATC----TCTATAA-ACAAGAAATCCT--------CTAAT
gi|12 : TT---GAAAA--GAATACAACAACTTTA--------CC--AAG-----CACGTGTC--CAATGAC-----TACACCATTGTTTTAAATTGC-----AAT-----------CGCAA----TATTTGCCCATAACGATTGC--TGTCCTCTCTTTTT-GTTTCTAAAATTTGCAA--TACATGGGATTCCAGA
gi|4 : ttGAATGCAACAATTTTAGTTATTTTTC--AAGGCATATACGTGTCCA-----ACTAC--TACAACATC-----------CTTTAAAAC-----------TGC-AACCATATTTGTCCACAG-GATTCT--TGACCTCTCTTTT--GTTTCTAAAATGTGTCCCTCA-ATGGGATTCCAGATATT----TCTGTAA-ATATGAAATCCT--------CTGATGCAAGAAATGTACGAGTACTCAGACATC-----ACTCTGTGAGAAGGGGAAAATGAAA-GTTTACTATAGGTCCTACATGGAATGACTCAACTA------ATTTCCAAATACCATC----TG----ACAA---------------AAAC---TTAATACTGAA-----------AGTTGATTATTTC
gi|11 : GATTCCAGATATCTAGATCGGTAA-AC---AAAT-TT--------TGAATGCAAGAAATGTA--T------------C-----GCTCCATGAAAAAGTGAAAACGAAA-GTTCAC--CAAGTCCTACTTGGAATTACTCAACTA------ATTTCCAAAT-----------------------------------AAACAAGTCAAAATTGAA-----------AGTTGATTGTTT
gi|2 : C----TTGGTAATGCAAGAAATCCTTTCAGGGCCTAATTGAGGAAATGTA--G------------CCTATCGTTCCATGAGAAAGTGAAAACGAAAAGTCT-T--TAAGTCGTACGTGGAATGACTCGACTA------ATTTCTAAATGCTGTCATGCTGACAAACAA--CTTAC--T---TTAAACAAGTCAAAGTT-------------------------TCCTGTTTA------CACTGTTTGATTAGATTCGT
gi|3 : tT--------CTAATGCAAAAAATGTA--T------------C-----ACTACATGAGAAAGTGGAAACAAAA-GTTCAC--CAAGTCGTACGTGGAATGACTCGGCTA------ATTTCCAAATACCAAC----TGACGAAAAA--CTTCCTGT---TTACACtaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttcataacgcacagacctaataccccctcccccctcctaattttctaagtgtccggggcactcagtcgaaggatgaatacggtatactagcagtaaacttact
gi|7 : ctatgCGTACATGGAATGATTCAACT---------TTGCAAATGCAGTC----TAATGTACTA--CTTAC--T---TTAAGCAAGTCAAAGTT-------------------------TCCTGTTTACACTTGCACTGTTTTATTAGATtgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|15 : TACATGAAATGACTTGACTATATATAATTTCCAAATACCATC----TGACAAATAGCTATTTC--TCTATTATACAAGTCAAAATTGAATTCATTTTTAAAGTTGATAATTTCCTATTTA------TGTTGTTgctgtcagatggtattcctggagtataggagcatatatacttctttgaacattcattttagatg
gi|14 : GAATGACTCAACTA------ATTTCCAAATGCCATC----TGACGAACAG--CCAAC--T---TTTAATAAGTCAAAATTGAA-----------AGTTACTTATTTCCTGTTTA------AGCTGTTTGATTAGGTTCGT
gi|3 : gACTTCCTGTTTA------CACTGTTTGATTAGATTCGTtaataaagtgatgtt
gi|2 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaCATAACGCACAGACCTAATA------------CCC----------CCTCCCCCCT-C-CTAATTT-TCTAAGTGTCC--GGGGCACTCAGTCGAAGGATGAATACGGTAtaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|17 : tcttggtaatgcaagaaatcctttcagggcctaattgaggaaatgtagcctatcgttccatgagaaagtgaaaacgaaaagtctttaagtcgtacgtggaatgactcgactaatttctaaatgctgtcatgctgacaaacaacttactttaaacaagtcaaagtttcctgtttacactgtttgattagattcgttaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttCACAACAGACGGACCTAATA--------A---CCG----------CC--CCCTTT-TTCTGATTT-TCTAAGTGCCC--GGGGCGCTCAAT---AGGATGAATAtactagcagtaaacttact
gi|5 : aatacacgtttCATAACACACAGACATAATAGTGATGATAATACCATAATACCTTTCT--CTCTTT-T-TT--TTC-TCTAAGTGCTCACGTGGCACTCA-T---AGGACGAATACGGTA
gi|3 : taacgtagagctgtctgattttattcctagggtacaggggtttatatatatatatatatatgtacacgatacacttcttagatggggatgcagtaaaaaaaaacatgacattgtttcactatggatctatgctttaaatttctttttacacaaagcaagtttACAACAGACATACTTAATA--------AG---CA----------TC--CCCTTTTC-CCAATTT-TCTAAGTGCCT--GGGGCACTCATA---AGGACAAATATGGTA
gi|19 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaacttcctgtttacactgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttTAACAGATGGACCCAA-A--------TA-ACCG----------CC--CCCTTT-TTCTTATTT-TCTAAGCACCC--GGGGCGTTCAAT---AGGttttaagtgactttaa
gi|13 : atacacggttcacACGGACCCAATA--------A---CCG----------CC--CCCTTT-TTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGA-GAATACGGTA
gi|18 : aatacacgttctcacaaagACGGACCTA-TA--------A---CCG----------CC--CCCTTT-T-CTAATTT-TCTAAGCGCCC--GGGGCACTCGGT---AGGACGAATACGGTtttttgaatttatgctggtggaaaaatgtcaaaatatttgaaaa
gi|20 : aacgtttcacaacagaGACTTAATA--------A---CCA----------CC--CCCTTA-T-CTAATTT-TCTAAG
gi|16 : atttcactgtaagACCCAATA------------CCAGC--------CC--CCTTTT-T-CTAATTTACCTAAGCGCCC--CC-GCGCTCAAT---AGGACGAATACGGTAATtgcc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CGTTAATAAAGTGATGTTTGAAAATATTCTTAAAGTACAGGGGCATACATGTATACTTCTAAAAATTAAAAATGCATTTTCAGATGAAGGGGACCGCAGTTAAGAAAAAGTATGTTTCTATACGGATGTATGCTTTACATATCATTTTACACAATGCA
Unaligned ( gi|9 ): TAAACTCGTACATGCGAAGAATAACAGCATTTTAATCCATGGCCGTAGAAGGTAGCATGTATAACTTCTTTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444 111 11 333333333333 22222 1111 22222 222222222222 4444444 11 1111 22222222 4444444444444444444444 11 111111 1111 333333333333 111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1
lowQualScore : 4 2 2222 4 7 1 444 11 0 0 666666666666 00000 3 7777 00000 111111111111 1 8 0000000 0 8 11 66 8 1 3 1 8 4444 3 8 11 44444444 9999999999999999999999 11 2 444444 1 1 0000 4 66 0 9999999 0 111111111111 33 1 999999 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 4 66 4 6 4 4 66 2 777 0
lowQualScore : . . .... . . . ... .. . . ............ ..... . .... ..... ............ . . ....... . . .. .. . . . . . .... . . .. ........ ...................... .. . ...... . . .... . .. . ....... . ............ .. . ...... . ........................................................................................................................ . . . .. . . . . .. . ... .
lowQualScore : 0 5 5555 0 3 0 888 00 8 8 444444444444 00000 2 6666 00000 000000000000 4 0 8888888 8 0 00 44 0 0 8 4 0 2222 2 0 88 22222222 0000000000000000000000 00 7 444444 1 1 6666 5 99 2 8888888 2 444444444444 00 6 222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 4 11 0 0 0 0 11 7 888 2
consensus : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATC-CTTTAA-----AACCGC-AA-CA--TATTTGCCCATAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------ATC-----GCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAACAGA-CGGACCTAA-T--AACCGC-CCCCTTTTTCT-AATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
Reference ( family-633 ) : TTTCTAGAAACACT----GCATTTCAATGTTCCTCCANGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCACAACTACTA-----CACCATC-CTCTAA-----AACCGC-A------TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATNTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------ANC-----GCTCCGTGAGAAAGTGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAACAGA-CGGACCTAA-T--AACCGC-CCCCTTTT-CT-AATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
gi|1 : TTTCCAGTAACAATTAATGCATTCCAAAGTCCCTCCATGTTA--AAAACAGAATGCAAAAACTTTA--------TC--AAG-----CAGGTGTCTATAATTACTATAGTACACCATC-C----------AATCGC-A------TATTTGCCCATAG-AATTGT--TGTTTTCTCTTTTTGGTTTCTATAATTTTCCCTTTA-ACGGGATTCCAGATACC----TCAGTAA-ACAAGAAATCCT--------CTAATACAATAAATGT--------------AAC-----ACTCTGTGAGAAAGCAAAAACGAAAGTTTAC--CAAGTCGTACATCGAATGACTCAACTA------ATTTCCAAATATCGTC----TGATGAACAAA--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTAATTATTTCCTGTTTA------CACTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAATACA-CAGACCTAA-TAAAACCAC-CCCCTTTC-CT-AATTT-TCTAAGCACTC--GGAGCGCTCAAT---AGGACAAATACAGTAAT
gi|10 : TTTCTAGAAACACT----GCATTTCAATGTTCC-CCAAGTTT--TAAA--AA-------GACT---------------AAG-----CACGTGTCCA--GCTACTA-----CACCATC-CTCTAA-----GACAGC-A-------AT-----CATAG-GATTGT--TGTTCTCTCTTT--G-TTTCTAGAATTTGTTCCTTA-ATGGGGTTCTAGATATC----gcataaaaaaaaatttcctgtatataaaac
gi|11 : tGATTCCAGATATCTAGATCGGTAA-AC---AAAT-TT--------TGAATGCAAGAAATGT--------------ATC-----GCTCCATGAAAAAGTGAAAACGAAAGTTCAC--CAAGTCCTACTTGGAATTACTCAACTA------ATTTCCAAA-----------------------------------TAAACAAGTCAAAATTG-----------AAAGTTGATTGTTT
gi|12 : TTG--AAAA--GAATACAACAACTTTA--------CC--AAG-----CACGTGTC--CAATGACTA-----CACCATTGTTTTAAATTGCAATCGCAA------TATTTGCCCATAACGATTGC--TGTCCTCTCTTTTTG-TTTCTAAAATTTG--CAATACATGGGATTCCAGA
gi|13 : ttCACAA-AGA-CGGACCCAA-T--AACCGC-CCCCTTTTTCT-AATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGA-GAATACGGTA
gi|14 : aatacacgttctGGAATGACTCAACTA------ATTTCCAAATGCCATC----TGACGAACAGC--CAAC--T---TTTAATAAGTCAAAATTG-----------AAAGTTACTTATTTCCTGTTTA------AGCTGTTTGATTAGGTTCGTtttttgaatttatgctggtggaaaaatgtcaaaatatttgaaaa
gi|15 : TACATGAAATGACTTGACTATATATAATTTCCAAATACCATC----TGACAAATAGCTATTTC--TCTATTATACAAGTCAAAATTGAATTCATTTTTAAAGTTGATAATTTCCTATTTA------TGTTGTTtaataaagtgatgtt
gi|16 : CACAACAGAGCGCACCCAA-T--ACCAGC-CCCCTTTTTCT-AATTTACCTAAGCGCCC---CCGCGCTCAAT---AGGACGAATACGGTAAT
gi|17 : cgtttCACAACAGA-CGGACCTAA-T--AACCGC-CCCCTTTTTCT-GATTT-TCTAAGTGCCC--GGGGCGCTCAAT---AGGATGAATAatgatttcat
gi|18 : aatacacgtttCACAACAGAACGGACCTA--T--AACCGC-CCCCTTTT-CT-AATTT-TCTAAGCGCCC--GGGGCACTCGGT---AGGACGAATACGGT
gi|19 : aacgtttTAACAGA-TGGACCCAAAT--AACCGC-CCCCTTTTTCT-TATTT-TCTAAGCACCC--GGGGCGTTCAAT---AGG
gi|2 : atacacggttcacTC----TTGGTAATGCAAGAAATCCTTTCAGGGCCTAATTGAGGAAATGT--------------AGCCTATCGTTCCATGAGAAAGTGAAAACGAAAAGTCTT--TAAGTCGTACGTGGAATGACTCGACTA------ATTTCTAAATGCTGTCATGCTGACAAACAAC--TTAC--T---TTAAACAAGTCAAAGTT-------------------------TCCTGTTTA------CACTGTTTGATTAGATTCGT
gi|2 : CATAACGCA-CAGACCTAA-T--ACCCCCTCCCCCCTC-CT-AATTT-TCTAAGTGTCC--GGGGCACTCAGTCGAAGGATGAATACGGTAtaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttcataacgcacagacctaataccccctcccccctcctaattttctaagtgtccggggcactcagtcgaaggatgaatacggtatactagcagtaaacttact
gi|20 : tcttggtaatgcaagaaatcctttcagggcctaattgaggaaatgtagcctatcgttccatgagaaagtgaaaacgaaaagtctttaagtcgtacgtggaatgactcgactaatttctaaatgctgtcatgctgacaaacaacttactttaaacaagtcaaagtttcctgtttacactgtttgattagattcgttaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttGGACTTAA-T--AACCAC-CCCCTTAT-CT-AATTT-TCTAAGTGCCtactagcagtaaacttact
gi|3 : atttcactgtaaT--------CTAATGCAAAAAATGT--------------ATC-----ACTACATGAGAAAGTGGAAACAAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGGCTA------ATTTCCAAATACCAAC----TGACGAAAAAC--TTCCTGT---TTACAC
gi|3 : ctatgACTTCCTGTTTA------CACTGTTTGATTAGATTCGTtgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|3 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaACAACAGA-CATACTTAA-T--AAGCAT-CCCCTTTT-CCCAATTT-TCTAAGTGCCT--GGGGCACTCATA---AGGACAAATATGGTAtaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|4 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaacttcctgtttacactgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagcttt--GAATGCAACAATTTTAGTTATTTTTC--AAGGCATATACGTGTCCA--ACTACTA-----CAACATC-CTTTAA-----AACTGC-AACCA--TATTTGTCCACAG-GATTCT--TGACCTCTCTTTT-G-TTTCTAAAATGTGTCCCTCA-ATGGGATTCCAGATATT----TCTGTAA-ATATGAAATCCT--------CTGATGCAAGAAATGTACGAGTACTCAGACATC-----ACTCTGTGAGAAGGGGAAAATGAAAGTTTACTATAGGTCCTACATGGAATGACTCAACTA------ATTTCCAAATACCATC----TGACAAA-AAC--TTAA--T-----------------ACTG-----------AAAGTTGATTATTTCttttaagtgactttaa
gi|5 : C-TCTCTTTT-TT---TTC-TCTAAGTGCTCACGTGGCACTCA-T---AGGACGAATACGGTA
gi|6 : taacgtagagctgtctgattttattcctagggtacaggggtttatatatatatatatatatgtacacgatacacttcttagatggggatgcagtaaaaaaaaacatgacattgtttcactatggatctatgctttaaatttctttttacacaaagcaagtttcataacacacagacataatagtgatgataataccataatacctttTCCATGTTTTCAAAA--ACATGCAACGACTTTA--------CCTTGAG-----CACATGTTCATATATACTA-----CACCATT-CAATAA-----AACTGC-AATCACATATTTCCCCACAG-GATTATAATGTCCTCTCTTTTTG-TTTCTAAAATATGTCCTTTA-ATGGGATTCCAGATATC----TCTATAA-ACAAGAAATCCT--------CTAAT
gi|7 : CGTACATGGAATGATTCAACT---------TTGCAAATGCAGTC----TAATGTACTAC--TTAC--T---TTAAGCAAGTCAAAGTT-------------------------TCCTGTTTACACTTGCACTGTTTTATTAGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTAATAAAGTGATGTTTGAAAATATTCTTAAAGTACAGGGGCATACATGTATACTTCTAAAAATTAAAAATGCATTTTCAGATGAAGGGGACCGCAGTTAAGAAAAAGTATGTTTCTATACGGATGTATGCTTTACATATCATTTTACACAATGCA
Unaligned ( gi|9 ): TAAACTCGTACATGCGAAGAATAACAGCATTTTAATCCATGGCCGTAGAAGGTAGCATGTATAACTTCTTTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 111 11 333333333333 22222 11111 22222 11 4444444444 11 1111 22222222 55555555555555555555 11 111111 1111 333333333333 111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1
lowQualScore : 1 1 4444 1 7 444 11 0 0 666666666666 00000 77777 00000 00 1 4 6666666666 8 11 66 8 1 3 1 8 4444 3 8 11 44444444 88888888888888888888 4 11 2 444444 1 1 0000 4 66 0 9999999 0 111111111111 33 1 999999 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 4 4 55 5 4 66 2 777 0
lowQualScore : . . .... . . ... .. . . ............ ..... ..... ..... .. . . .......... . .. .. . . . . . .... . . .. ........ .................... . .. . ...... . . .... . .. . ....... . ............ .. . ...... . ........................................................................................................................ . . . . .. . . .. . ... .
lowQualScore : 0 0 5555 0 3 888 00 8 8 444444444444 00000 44444 00000 00 0 6 8888888888 0 00 44 0 0 8 4 0 2222 2 0 88 22222222 00000000000000000000 6 00 7 444444 1 1 6666 5 99 2 8888888 2 444444444444 00 6 222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 55 3 0 11 7 888 2
consensus : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACTGCAA---CC---ATATTTGCCCATAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
Reference ( family-633 ) : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACCGCAA---C----ATATTTGCCCATAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
gi|1 : TTTCCAGTAACAATTAATGCATTCCAAAGTCCCTCCATGTTA--AAAACAGAATGCAAAAACTTTA--------TC--AAG-----CAGGTGTCTATAATTACTATAGTACACCATCC-----AATCGCA----------TATTTGCCCATAG-AATTGT--TGTTTTCTCTTTTTGGTTTCTATAATTTTCCCTTTA-ACGGGATTCCAGATACC----TCAGTAA-ACAAGAAATCCT--------CTAATACAATAAATGT--------------A-----ACACTCTGTGAGAAAGCAAAAACGAAAGTTTAC--CAAGTCGTACATCGAATGACTCAACTA------ATTTCCAAATATCGTC----TGATGAACAAA--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTAATTATTTCCTGTTTA------CACTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAT-AATACA-CAGACC-TAA-TAAAACCACCCCC-TTTCCTAATTT-TCTAAGCACTC--GGAGCGCTCAAT---AGGACAAATACAGTAAT
gi|10 : TTTCTAGAAACACT----GCATTTCAATGTTCC-CCAAGTTT--TAAA--AA-------GACT---------------AAG-----CACGTGTCCA--GCTACTA-----CACCATCCTCTAAGACAGCAA---T-------------CATAG-GATTGT--TGTTCTCTCTTT--G-TTTCTAGAATTTGTTCCTTA-ATGGGGTTCTAGATATC----gcataaaaaaaaatttcctgtatataaaac
gi|11 : tGATTCCAGATATCTAGATCGGTAA-AC---AAAT-TT--------TGAATGCAAGAAATGT--------------A-----TCGCTCCATGAAAAAGTGAAAACGAAAGTTCAC--CAAGTCCTACTTGGAATTACTCAACTA------ATTTCCAAA-----------------------------------TAAACAAGTCAAAATTG-----------AAAGTTGATTGTTT
gi|12 : TTG--AAAA--GAATACAACAACTTTA--------CC--AAG-----CACGTGTCC--AATGACTA-----CACCATTGTTTTAAATTGCAA---TCGCAATATTTGCCCATAACGATTGC--TGTCCTCTCTTTTTG-TTTCTAAAATTTG--CAATACATGGGATTCCAGA
gi|13 : ttCAC-AA-AGA-CGGACC-CAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGA-GAATACGGTA
gi|14 : aatacacgttctGGAATGACTCAACTA------ATTTCCAAATGCCATC----TGACGAACAGC--CAAC--T---TTTAATAAGTCAAAATTG-----------AAAGTTACTTATTTCCTGTTTA------AGCTGTTTGATTAGGTTCGTtttttgaatttatgctggtggaaaaatgtcaaaatatttgaaaa
gi|15 : TACATGAAATGACTTGACTATATATAATTTCCAAATACCATC----TGACAAATAGCTATTTC--TCTATTATACAAGTCAAAATTGAATTCATTTTTAAAGTTGATAATTTCCTATTTA------TGTTGTTtaataaagtgatgtt
gi|16 : CAC-AACAGAGCGCACC-CAA-T--ACCAGCCCCCTTTTTCTAATTTACCTAAGCGCCC---CCGCGCTCAAT---AGGACGAATACGGTAAT
gi|17 : cgtttCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTGATTT-TCTAAGTGCCC--GGGGCGCTCAAT---AGGATGAATAatgatttcat
gi|18 : aatacacgtttCAC-AACAGAACGGACC-TA--T--AACCGCCCCCTTTT-CTAATTT-TCTAAGCGCCC--GGGGCACTCGGT---AGGACGAATACGGT
gi|19 : aacgtttCACTAACAGA-TGGACC-CAAAT--AACCGCCCCCTTTTTCTTATTT-TCTAAGCACCC--GGGGCGTTCAAT---AGG
gi|2 : atacacggttTC----TTGGTAATGCAAGAAATCCTTTCAGGGCCTAATTGAGGAAATGT--------------AGCCTATCGTTCCATGAGAAAGTGAAAACGAAAAGTCTT--TAAGTCGTACGTGGAATGACTCGACTA------ATTTCTAAATGCTGTCATGCTGACAAACAAC--TTAC--T---TTAAACAAGTCAAAGTT-------------------------TCCTGTTTA------CACTGTTTGATTAGATTCGT
gi|2 : CAT-AACGCA-CAGACC-TAA-T--ACCCCCTCCCCCCTCCTAATTT-TCTAAGTGTCC--GGGGCACTCAGTCGAAGGATGAATACGGTAtaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttcataacgcacagacctaataccccctcccccctcctaattttctaagtgtccggggcactcagtcgaaggatgaatacggtatactagcagtaaacttact
gi|20 : tcttggtaatgcaagaaatcctttcagggcctaattgaggaaatgtagcctatcgttccatgagaaagtgaaaacgaaaagtctttaagtcgtacgtggaatgactcgactaatttctaaatgctgtcatgctgacaaacaacttactttaaacaagtcaaagtttcctgtttacactgtttgattagattcgttaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttGGACT-TAA-T--AACCACCCCCTTAT-CTAATTT-TCTAAGTGCCtactagcagtaaacttact
gi|3 : atttcactgtaaT--------CTAATGCAAAAAATGT--------------A-----TCACTACATGAGAAAGTGGAAACAAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGGCTA------ATTTCCAAATACCAAC----TGACGAAAAAC--TTCCTGT---TTACAC
gi|3 : ctatgACTTCCTGTTTA------CACTGTTTGATTAGATTCGTtgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|3 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaAC-AACAGA-CATACT-TAA-T--AAGCATCCCCTTTTCCCAATTT-TCTAAGTGCCT--GGGGCACTCATA---AGGACAAATATGGTAtaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|4 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaacttcctgtttacactgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagcttt--GAATGCAACAATTTTAGTTATTTTTC--AAGGCATATACGTGTCCA--ACTACTA-----CAACATCCTTTAAAACTGCAA---CC---ATATTTGTCCACAG-GATTCT--TGACCTCTCTTTT-G-TTTCTAAAATGTGTCCCTCA-ATGGGATTCCAGATATT----TCTGTAA-ATATGAAATCCT--------CTGATGCAAGAAATGTACGAGTACTCAGACA-----TCACTCTGTGAGAAGGGGAAAATGAAAGTTTACTATAGGTCCTACATGGAATGACTCAACTA------ATTTCCAAATACCATC----TGACAAA-AAC--TTAA--T-----------------ACTG-----------AAAGTTGATTATTTCttttaagtgactttaa
gi|5 : ACCATAA-T--ACCTTTCTCTCTTTTTT--TTC-TCTAAGTGCTCACGTGGCACTCA-T---AGGACGAATACGGTA
gi|6 : taacgtagagctgtctgattttattcctagggtacaggggtttatatatatatatatatatgtacacgatacacttcttagatggggatgcagtaaaaaaaaacatgacattgtttcactatggatctatgctttaaatttctttttacacaaagcaagtttcataacacacagacataatagtgatgataatTCCATGTTTTCAAAA--ACATGCAACGACTTTA--------CCTTGAG-----CACATGTTCATATATACTA-----CACCATTCAATAAAACTGCAATCAC----ATATTTCCCCACAG-GATTATAATGTCCTCTCTTTTTG-TTTCTAAAATATGTCCTTTA-ATGGGATTCCAGATATC----TCTATAA-ACAAGAAATCCT--------CTAAT
gi|7 : CGTACATGGAATGATTCAACT---------TTGCAAATGCAGTC----TAATGTACTAC--TTAC--T---TTAAGCAAGTCAAAGTT-------------------------TCCTGTTTACACTTGCACTGTTTTATTAGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTAATAAAGTGATGTTTGAAAATATTCTTAAAGTACAGGGGCATACATGTATACTTCTAAAAATTAAAAATGCATTTTCAGATGAAGGGGACCGCAGTTAAGAAAAAGTATGTTTCTATACGGATGTATGCTTTACATATCATTTTACACAATGCA
Unaligned ( gi|9 ): TAAACTCGTACATGCGAAGAATAACAGCATTTTAATCCATGGCCGTAGAAGGTAGCATGTATAACTTCTTTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 111 11 333333333333 22222 11111 22222 11 222222222 11 1111 22222222 55555555555555555555 11 111111 1111 333333333333 111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1
lowQualScore : 1 1 4444 1 7 444 11 0 0 666666666666 00000 77777 00000 00 1 111111111 0 1 8 11 66 8 1 3 1 8 4444 3 8 11 44444444 88888888888888888888 4 11 2 444444 1 1 0000 4 66 0 9999999 0 111111111111 33 1 999999 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 4 4 55 5 4 66 2 777 0
lowQualScore : . . .... . . ... .. . . ............ ..... ..... ..... .. . ......... . . . .. .. . . . . . .... . . .. ........ .................... . .. . ...... . . .... . .. . ....... . ............ .. . ...... . ........................................................................................................................ . . . . .. . . .. . ... .
lowQualScore : 0 0 5555 0 3 888 00 8 8 444444444444 00000 44444 00000 00 0 222222222 8 8 0 00 44 0 0 8 4 0 2222 2 0 88 22222222 00000000000000000000 6 00 7 444444 1 1 6666 5 99 2 8888888 2 444444444444 00 6 222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 55 3 0 11 7 888 2
consensus : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACTGCAATC---A--TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
Reference ( family-633 ) : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACTGCAACC---A--TATTTGCCCATAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
gi|1 : TTTCCAGTAACAATTAATGCATTCCAAAGTCCCTCCATGTTA--AAAACAGAATGCAAAAACTTTA--------TC--AAG-----CAGGTGTCTATAATTACTATAGTACACCATCC-----AATCGCA---------TATTTGCCCATAG-AATTGT--TGTTTTCTCTTTTTGGTTTCTATAATTTTCCCTTTA-ACGGGATTCCAGATACC----TCAGTAA-ACAAGAAATCCT--------CTAATACAATAAATGT--------------A-----ACACTCTGTGAGAAAGCAAAAACGAAAGTTTAC--CAAGTCGTACATCGAATGACTCAACTA------ATTTCCAAATATCGTC----TGATGAACAAA--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTAATTATTTCCTGTTTA------CACTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAT-AATACA-CAGACC-TAA-TAAAACCACCCCC-TTTCCTAATTT-TCTAAGCACTC--GGAGCGCTCAAT---AGGACAAATACAGTAAT
gi|10 : TTTCTAGAAACACT----GCATTTCAATGTTCC-CCAAGTTT--TAAA--AA-------GACT---------------AAG-----CACGTGTCCA--GCTACTA-----CACCATCCTCTAAGACAGCAATC---A--TA----------G-GATTGT--TGTTCTCTCTTT--G-TTTCTAGAATTTGTTCCTTA-ATGGGGTTCTAGATATC----gcataaaaaaaaatttcctgtatataaaac
gi|11 : tGATTCCAGATATCTAGATCGGTAA-AC---AAAT-TT--------TGAATGCAAGAAATGT--------------A-----TCGCTCCATGAAAAAGTGAAAACGAAAGTTCAC--CAAGTCCTACTTGGAATTACTCAACTA------ATTTCCAAA-----------------------------------TAAACAAGTCAAAATTG-----------AAAGTTGATTGTTT
gi|12 : TTG--AAAA--GAATACAACAACTTTA--------CC--AAG-----CACGTGTCC--AATGACTA-----CACCATTGTTTTAAATTGCAATCGCAA--TATTTGCCCATAACGATTGC--TGTCCTCTCTTTTTG-TTTCTAAAATTTG--CAATACATGGGATTCCAGA
gi|13 : ttCAC-AA-AGA-CGGACC-CAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGA-GAATACGGTA
gi|14 : aatacacgttctGGAATGACTCAACTA------ATTTCCAAATGCCATC----TGACGAACAGC--CAAC--T---TTTAATAAGTCAAAATTG-----------AAAGTTACTTATTTCCTGTTTA------AGCTGTTTGATTAGGTTCGTtttttgaatttatgctggtggaaaaatgtcaaaatatttgaaaa
gi|15 : TACATGAAATGACTTGACTATATATAATTTCCAAATACCATC----TGACAAATAGCTATTTC--TCTATTATACAAGTCAAAATTGAATTCATTTTTAAAGTTGATAATTTCCTATTTA------TGTTGTTtaataaagtgatgtt
gi|16 : CAC-AACAGAGCGCACC-CAA-T--ACCAGCCCCCTTTTTCTAATTTACCTAAGCGCCC---CCGCGCTCAAT---AGGACGAATACGGTAAT
gi|17 : cgtttCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTGATTT-TCTAAGTGCCC--GGGGCGCTCAAT---AGGATGAATAatgatttcat
gi|18 : aatacacgtttCAC-AACAGAACGGACC-TA--T--AACCGCCCCCTTTT-CTAATTT-TCTAAGCGCCC--GGGGCACTCGGT---AGGACGAATACGGT
gi|19 : aacgtttCACTAACAGA-TGGACC-CAAAT--AACCGCCCCCTTTTTCTTATTT-TCTAAGCACCC--GGGGCGTTCAAT---AGG
gi|2 : atacacggttTC----TTGGTAATGCAAGAAATCCTTTCAGGGCCTAATTGAGGAAATGT--------------AGCCTATCGTTCCATGAGAAAGTGAAAACGAAAAGTCTT--TAAGTCGTACGTGGAATGACTCGACTA------ATTTCTAAATGCTGTCATGCTGACAAACAAC--TTAC--T---TTAAACAAGTCAAAGTT-------------------------TCCTGTTTA------CACTGTTTGATTAGATTCGT
gi|2 : CAT-AACGCA-CAGACC-TAA-T--ACCCCCTCCCCCCTCCTAATTT-TCTAAGTGTCC--GGGGCACTCAGTCGAAGGATGAATACGGTAtaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttcataacgcacagacctaataccccctcccccctcctaattttctaagtgtccggggcactcagtcgaaggatgaatacggtatactagcagtaaacttact
gi|20 : tcttggtaatgcaagaaatcctttcagggcctaattgaggaaatgtagcctatcgttccatgagaaagtgaaaacgaaaagtctttaagtcgtacgtggaatgactcgactaatttctaaatgctgtcatgctgacaaacaacttactttaaacaagtcaaagtttcctgtttacactgtttgattagattcgttaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttGGACT-TAA-T--AACCACCCCCTTAT-CTAATTT-TCTAAGTGCCtactagcagtaaacttact
gi|3 : atttcactgtaaT--------CTAATGCAAAAAATGT--------------A-----TCACTACATGAGAAAGTGGAAACAAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGGCTA------ATTTCCAAATACCAAC----TGACGAAAAAC--TTCCTGT---TTACAC
gi|3 : ctatgACTTCCTGTTTA------CACTGTTTGATTAGATTCGTtgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|3 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaAC-AACAGA-CATACT-TAA-T--AAGCATCCCCTTTTCCCAATTT-TCTAAGTGCCT--GGGGCACTCATA---AGGACAAATATGGTAtaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|4 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaacttcctgtttacactgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagcttt--GAATGCAACAATTTTAGTTATTTTTC--AAGGCATATACGTGTCCA--ACTACTA-----CAACATCCTTTAAAACTGCAACC---A--TATTTGTCCACAG-GATTCT--TGACCTCTCTTTT-G-TTTCTAAAATGTGTCCCTCA-ATGGGATTCCAGATATT----TCTGTAA-ATATGAAATCCT--------CTGATGCAAGAAATGTACGAGTACTCAGACA-----TCACTCTGTGAGAAGGGGAAAATGAAAGTTTACTATAGGTCCTACATGGAATGACTCAACTA------ATTTCCAAATACCATC----TGACAAA-AAC--TTAA--T-----------------ACTG-----------AAAGTTGATTATTTCttttaagtgactttaa
gi|5 : ACCATAA-T--ACCTTTCTCTCTTTTTT--TTC-TCTAAGTGCTCACGTGGCACTCA-T---AGGACGAATACGGTA
gi|6 : taacgtagagctgtctgattttattcctagggtacaggggtttatatatatatatatatatgtacacgatacacttcttagatggggatgcagtaaaaaaaaacatgacattgtttcactatggatctatgctttaaatttctttttacacaaagcaagtttcataacacacagacataatagtgatgataatTCCATGTTTTCAAAA--ACATGCAACGACTTTA--------CCTTGAG-----CACATGTTCATATATACTA-----CACCATTCAATAAAACTGCAATC---ACATATTTCCCCACAG-GATTATAATGTCCTCTCTTTTTG-TTTCTAAAATATGTCCTTTA-ATGGGATTCCAGATATC----TCTATAA-ACAAGAAATCCT--------CTAAT
gi|7 : CGTACATGGAATGATTCAACT---------TTGCAAATGCAGTC----TAATGTACTAC--TTAC--T---TTAAGCAAGTCAAAGTT-------------------------TCCTGTTTACACTTGCACTGTTTTATTAGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTAATAAAGTGATGTTTGAAAATATTCTTAAAGTACAGGGGCATACATGTATACTTCTAAAAATTAAAAATGCATTTTCAGATGAAGGGGACCGCAGTTAAGAAAAAGTATGTTTCTATACGGATGTATGCTTTACATATCATTTTACACAATGCA
Unaligned ( gi|9 ): TAAACTCGTACATGCGAAGAATAACAGCATTTTAATCCATGGCCGTAGAAGGTAGCATGTATAACTTCTTTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 111 11 333333333333 22222 11111 22222 11 222222 11 1111 22222222 55555555555555555555 11 111111 1111 333333333333 111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1
lowQualScore : 1 1 4444 1 7 444 11 0 0 666666666666 00000 77777 00000 00 1 0 000000 0 1 8 11 66 8 1 3 1 8 4444 3 8 11 44444444 88888888888888888888 4 11 2 444444 1 1 0000 4 66 0 9999999 0 111111111111 33 1 999999 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 4 4 55 5 4 66 2 777 0
lowQualScore : . . .... . . ... .. . . ............ ..... ..... ..... .. . . ...... . . . .. .. . . . . . .... . . .. ........ .................... . .. . ...... . . .... . .. . ....... . ............ .. . ...... . ........................................................................................................................ . . . . .. . . .. . ... .
lowQualScore : 0 0 5555 0 3 888 00 8 8 444444444444 00000 44444 00000 00 0 8 888888 8 4 0 00 44 0 0 8 4 0 2222 2 0 88 22222222 00000000000000000000 6 00 7 444444 1 1 6666 5 99 2 8888888 2 444444444444 00 6 222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 55 3 0 11 7 888 2
consensus : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACTGCAATC---A--TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
Reference ( family-633 ) : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACTGCAATC---A--TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
gi|1 : TTTCCAGTAACAATTAATGCATTCCAAAGTCCCTCCATGTTA--AAAACAGAATGCAAAAACTTTA--------TC--AAG-----CAGGTGTCTATAATTACTATAGTACACCATCC-----AATCGCA---------TATTTGCCCATAG-AATTGT--TGTTTTCTCTTTTTGGTTTCTATAATTTTCCCTTTA-ACGGGATTCCAGATACC----TCAGTAA-ACAAGAAATCCT--------CTAATACAATAAATGT--------------A-----ACACTCTGTGAGAAAGCAAAAACGAAAGTTTAC--CAAGTCGTACATCGAATGACTCAACTA------ATTTCCAAATATCGTC----TGATGAACAAA--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTAATTATTTCCTGTTTA------CACTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAT-AATACA-CAGACC-TAA-TAAAACCACCCCC-TTTCCTAATTT-TCTAAGCACTC--GGAGCGCTCAAT---AGGACAAATACAGTAAT
gi|10 : TTTCTAGAAACACT----GCATTTCAATGTTCC-CCAAGTTT--TAAA--AA-------GACT---------------AAG-----CACGTGTCCA--GCTACTA-----CACCATCCTCTAAGACAGCAATC---A--TA----------G-GATTGT--TGTTCTCTCTTT--G-TTTCTAGAATTTGTTCCTTA-ATGGGGTTCTAGATATC----gcataaaaaaaaatttcctgtatataaaac
gi|11 : tGATTCCAGATATCTAGATCGGTAA-AC---AAAT-TT--------TGAATGCAAGAAATGT--------------A-----TCGCTCCATGAAAAAGTGAAAACGAAAGTTCAC--CAAGTCCTACTTGGAATTACTCAACTA------ATTTCCAAA-----------------------------------TAAACAAGTCAAAATTG-----------AAAGTTGATTGTTT
gi|12 : TTG--AAAA--GAATACAACAACTTTA--------CC--AAG-----CACGTGTCC--AATGACTA-----CACCATTGTTTTAAATTGCAATCGCAA--TATTTGCCCATAACGATTGC--TGTCCTCTCTTTTTG-TTTCTAAAATTTG--CAATACATGGGATTCCAGA
gi|13 : ttCAC-AA-AGA-CGGACC-CAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGA-GAATACGGTA
gi|14 : aatacacgttctGGAATGACTCAACTA------ATTTCCAAATGCCATC----TGACGAACAGC--CAAC--T---TTTAATAAGTCAAAATTG-----------AAAGTTACTTATTTCCTGTTTA------AGCTGTTTGATTAGGTTCGTtttttgaatttatgctggtggaaaaatgtcaaaatatttgaaaa
gi|15 : TACATGAAATGACTTGACTATATATAATTTCCAAATACCATC----TGACAAATAGCTATTTC--TCTATTATACAAGTCAAAATTGAATTCATTTTTAAAGTTGATAATTTCCTATTTA------TGTTGTTtaataaagtgatgtt
gi|16 : CAC-AACAGAGCGCACC-CAA-T--ACCAGCCCCCTTTTTCTAATTTACCTAAGCGCCC---CCGCGCTCAAT---AGGACGAATACGGTAAT
gi|17 : cgtttCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTGATTT-TCTAAGTGCCC--GGGGCGCTCAAT---AGGATGAATAatgatttcat
gi|18 : aatacacgtttCAC-AACAGAACGGACC-TA--T--AACCGCCCCCTTTT-CTAATTT-TCTAAGCGCCC--GGGGCACTCGGT---AGGACGAATACGGT
gi|19 : aacgtttCACTAACAGA-TGGACC-CAAAT--AACCGCCCCCTTTTTCTTATTT-TCTAAGCACCC--GGGGCGTTCAAT---AGG
gi|2 : atacacggttTC----TTGGTAATGCAAGAAATCCTTTCAGGGCCTAATTGAGGAAATGT--------------AGCCTATCGTTCCATGAGAAAGTGAAAACGAAAAGTCTT--TAAGTCGTACGTGGAATGACTCGACTA------ATTTCTAAATGCTGTCATGCTGACAAACAAC--TTAC--T---TTAAACAAGTCAAAGTT-------------------------TCCTGTTTA------CACTGTTTGATTAGATTCGT
gi|2 : CAT-AACGCA-CAGACC-TAA-T--ACCCCCTCCCCCCTCCTAATTT-TCTAAGTGTCC--GGGGCACTCAGTCGAAGGATGAATACGGTAtaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttcataacgcacagacctaataccccctcccccctcctaattttctaagtgtccggggcactcagtcgaaggatgaatacggtatactagcagtaaacttact
gi|20 : tcttggtaatgcaagaaatcctttcagggcctaattgaggaaatgtagcctatcgttccatgagaaagtgaaaacgaaaagtctttaagtcgtacgtggaatgactcgactaatttctaaatgctgtcatgctgacaaacaacttactttaaacaagtcaaagtttcctgtttacactgtttgattagattcgttaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttGGACT-TAA-T--AACCACCCCCTTAT-CTAATTT-TCTAAGTGCCtactagcagtaaacttact
gi|3 : atttcactgtaaT--------CTAATGCAAAAAATGT--------------A-----TCACTACATGAGAAAGTGGAAACAAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGGCTA------ATTTCCAAATACCAAC----TGACGAAAAAC--TTCCTGT---TTACAC
gi|3 : ctatgACTTCCTGTTTA------CACTGTTTGATTAGATTCGTtgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|3 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaAC-AACAGA-CATACT-TAA-T--AAGCATCCCCTTTTCCCAATTT-TCTAAGTGCCT--GGGGCACTCATA---AGGACAAATATGGTAtaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|4 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaacttcctgtttacactgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagcttt--GAATGCAACAATTTTAGTTATTTTTC--AAGGCATATACGTGTCCA--ACTACTA-----CAACATCCTTTAAAACTGCAACC---A--TATTTGTCCACAG-GATTCT--TGACCTCTCTTTT-G-TTTCTAAAATGTGTCCCTCA-ATGGGATTCCAGATATT----TCTGTAA-ATATGAAATCCT--------CTGATGCAAGAAATGTACGAGTACTCAGACA-----TCACTCTGTGAGAAGGGGAAAATGAAAGTTTACTATAGGTCCTACATGGAATGACTCAACTA------ATTTCCAAATACCATC----TGACAAA-AAC--TTAA--T-----------------ACTG-----------AAAGTTGATTATTTCttttaagtgactttaa
gi|5 : ACCATAA-T--ACCTTTCTCTCTTTTTT--TTC-TCTAAGTGCTCACGTGGCACTCA-T---AGGACGAATACGGTA
gi|6 : taacgtagagctgtctgattttattcctagggtacaggggtttatatatatatatatatatgtacacgatacacttcttagatggggatgcagtaaaaaaaaacatgacattgtttcactatggatctatgctttaaatttctttttacacaaagcaagtttcataacacacagacataatagtgatgataatTCCATGTTTTCAAAA--ACATGCAACGACTTTA--------CCTTGAG-----CACATGTTCATATATACTA-----CACCATTCAATAAAACTGCAATC---ACATATTTCCCCACAG-GATTATAATGTCCTCTCTTTTTG-TTTCTAAAATATGTCCTTTA-ATGGGATTCCAGATATC----TCTATAA-ACAAGAAATCCT--------CTAAT
gi|7 : CGTACATGGAATGATTCAACT---------TTGCAAATGCAGTC----TAATGTACTAC--TTAC--T---TTAAGCAAGTCAAAGTT-------------------------TCCTGTTTACACTTGCACTGTTTTATTAGAT
blockSeqs : A C . T T TTC . GTTATTTTTC GCATA ATATA . TC A GCAA T C AA TT . T T C C TAGA G T AA TTCAGGGC ACGAGTACTCAGACA T TA T TATATA G A ATGC C TA TCTAT GAATTCATTTTT GA T CACTTG T G A A . T A AC A CGA
blockSeqs : . T . CCTT . AGC . TT T ACA C . . TT . T T A . . G . AT . AGCCTA T . A . A A . T . TGTT G AC T . . A . . . T . . A .
blockSeqs : G . CC . AAT . TT A A C . . T . G T C . . T . AA . A T . G . G G . C . TT G GA A . . . . . . T . . A .
blockSeqs : . . . AAC . AA A A . . . . . A . T . . T . . . A G . G . A A . A . TT G GA T . . . . . . T . . G .
blockSeqs : . . A . A A . C . TT . . . . . . . . . C . . A .
blockSeqs : A . G G . . . T . . . . . . . . C . . G .
blockSeqs : . . . . . . . . . . . . T . . T .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** AAC** ***** TT GCA*** **
originalCons : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCATAACTACTA-----CACCATCCTTTAAAACTGCAATC---A--TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
finalCons : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCAAC--TACTA-----CACCATCCTTTAAAACTGCAATCGCA---TATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTAATAAAGTGATGTTTGAAAATATTCTTAAAGTACAGGGGCATACATGTATACTTCTAAAAATTAAAAATGCATTTTCAGATGAAGGGGACCGCAGTTAAGAAAAAGTATGTTTCTATACGGATGTATGCTTTACATATCATTTTACACAATGCA
Unaligned ( gi|9 ): TAAACTCGTACATGCGAAGAATAACAGCATTTTAATCCATGGCCGTAGAAGGTAGCATGTATAACTTCTTTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 111 11 333333333333 22222 22222 11 11 222 11 1111 22222222 55555555555555555555 11 111111 1111 333333333333 111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1
lowQualScore : 1 1 4444 1 7 444 11 0 0 666666666666 00000 88888 8 11 00 1 1 111 8 11 66 8 1 3 1 8 4444 3 8 11 44444444 88888888888888888888 4 11 2 444444 1 1 0000 4 66 0 9999999 0 111111111111 33 1 999999 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 4 4 55 5 4 66 2 777 0
lowQualScore : . . .... . . ... .. . . ............ ..... ..... . .. .. . . ... . .. .. . . . . . .... . . .. ........ .................... . .. . ...... . . .... . .. . ....... . ............ .. . ...... . ........................................................................................................................ . . . . .. . . .. . ... .
lowQualScore : 0 0 5555 0 3 888 00 8 8 444444444444 00000 00000 0 00 00 0 0 222 0 00 44 0 0 8 4 0 2222 2 0 88 22222222 00000000000000000000 6 00 7 444444 1 1 6666 5 99 2 8888888 2 444444444444 00 6 222222 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 55 3 0 11 7 888 2
consensus : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCAT----AC-TAC--TACACCATCCTTTAAAACTGCAATCGC-ATATTTGCCCATAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
Reference ( family-633 ) : TTTCCAGNAACANTTAATGCATTCCAANGTCCCTCCATGTTN--AAAA--GAATGCAACGACTTTA--------CC--AAG-----CACGTGTCCA-----AC-TAC--TACACCATCCTTTAAAACTGCAATCGC-ATATTTGCCCACAG-GATTGT--TGTCCTCTCTTTTTG-TTTCTAAAATTTGTCCCTTA-ATGGGATTCCAGATATC----TCGGTAA-ACAAGAAATCCT--------CTAATGCAAGAAATGT--------------A-----TCGCTCCGTGAGAAAGCGAAAACGAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGACTA------ATTTCCAAATGCCGTC----TGACGAACAAC--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTGATTATTTCCTGTTTA------CGCTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGACGAATACGGTAAT
gi|1 : TTTCCAGTAACAATTAATGCATTCCAAAGTCCCTCCATGTTA--AAAACAGAATGCAAAAACTTTA--------TC--AAG-----CAGGTGTCTATAATTAC-TATAGTACACCATCC-----------AATCGC-ATATTTGCCCATAG-AATTGT--TGTTTTCTCTTTTTGGTTTCTATAATTTTCCCTTTA-ACGGGATTCCAGATACC----TCAGTAA-ACAAGAAATCCT--------CTAATACAATAAATGT--------------A-----ACACTCTGTGAGAAAGCAAAAACGAAAGTTTAC--CAAGTCGTACATCGAATGACTCAACTA------ATTTCCAAATATCGTC----TGATGAACAAA--TTAC--T---TTAAACAAGTCAAAATTG-----------AAAGTTAATTATTTCCTGTTTA------CACTGTTTGATTAGATTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAT-AATACA-CAGACC-TAA-TAAAACCACCCCC-TTTCCTAATTT-TCTAAGCACTC--GGAGCGCTCAAT---AGGACAAATACAGTAAT
gi|10 : TTTCTAGAAACACT----GCATTTCAATGTTCC-CCAAGTTT--TAAA--AA-------GACT---------------AAG-----CACGTGTCCA-----GC-TAC--TACACCATCCTCTAAGACAGCAATC-------------ATAG-GATTGT--TGTTCTCTCTTT--G-TTTCTAGAATTTGTTCCTTA-ATGGGGTTCTAGATATC----gcataaaaaaaaatttcctgtatataaaac
gi|11 : tGATTCCAGATATCTAGATCGGTAA-AC---AAAT-TT--------TGAATGCAAGAAATGT--------------A-----TCGCTCCATGAAAAAGTGAAAACGAAAGTTCAC--CAAGTCCTACTTGGAATTACTCAACTA------ATTTCCAAA-----------------------------------TAAACAAGTCAAAATTG-----------AAAGTTGATTGTTT
gi|12 : TTG--AAAA--GAATACAACAACTTTA--------CC--AAG-----CACGTGTCCA-----AT-GAC--TACACCATTGTTTTAAATTGCAATCGCAATATTTGCCCATAACGATTGC--TGTCCTCTCTTTTTG-TTTCTAAAATTTG--CAATACATGGGATTCCAGA
gi|13 : ttCAC-AA-AGA-CGGACC-CAA-T--AACCGCCCCCTTTTTCTAATTT-TCTAAGCGCCC--GGGGCGCTCAAT---AGGA-GAATACGGTA
gi|14 : aatacacgttctGGAATGACTCAACTA------ATTTCCAAATGCCATC----TGACGAACAGC--CAAC--T---TTTAATAAGTCAAAATTG-----------AAAGTTACTTATTTCCTGTTTA------AGCTGTTTGATTAGGTTCGTtttttgaatttatgctggtggaaaaatgtcaaaatatttgaaaa
gi|15 : TACATGAAATGACTTGACTATATATAATTTCCAAATACCATC----TGACAAATAGCTATTTC--TCTATTATACAAGTCAAAATTGAATTCATTTTTAAAGTTGATAATTTCCTATTTA------TGTTGTTtaataaagtgatgtt
gi|16 : CAC-AACAGAGCGCACC-CAA-T--ACCAGCCCCCTTTTTCTAATTTACCTAAGCGCCC---CCGCGCTCAAT---AGGACGAATACGGTAAT
gi|17 : cgtttCAC-AACAGA-CGGACC-TAA-T--AACCGCCCCCTTTTTCTGATTT-TCTAAGTGCCC--GGGGCGCTCAAT---AGGATGAATAatgatttcat
gi|18 : aatacacgtttCAC-AACAGAACGGACC-TA--T--AACCGCCCCCTTTT-CTAATTT-TCTAAGCGCCC--GGGGCACTCGGT---AGGACGAATACGGT
gi|19 : aacgtttCACTAACAGA-TGGACC-CAAAT--AACCGCCCCCTTTTTCTTATTT-TCTAAGCACCC--GGGGCGTTCAAT---AGG
gi|2 : atacacggttTC----TTGGTAATGCAAGAAATCCTTTCAGGGCCTAATTGAGGAAATGT--------------AGCCTATCGTTCCATGAGAAAGTGAAAACGAAAAGTCTT--TAAGTCGTACGTGGAATGACTCGACTA------ATTTCTAAATGCTGTCATGCTGACAAACAAC--TTAC--T---TTAAACAAGTCAAAGTT-------------------------TCCTGTTTA------CACTGTTTGATTAGATTCGT
gi|2 : CAT-AACGCA-CAGACC-TAA-T--ACCCCCTCCCCCCTCCTAATTT-TCTAAGTGTCC--GGGGCACTCAGTCGAAGGATGAATACGGTAtaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttcataacgcacagacctaataccccctcccccctcctaattttctaagtgtccggggcactcagtcgaaggatgaatacggtatactagcagtaaacttact
gi|20 : tcttggtaatgcaagaaatcctttcagggcctaattgaggaaatgtagcctatcgttccatgagaaagtgaaaacgaaaagtctttaagtcgtacgtggaatgactcgactaatttctaaatgctgtcatgctgacaaacaacttactttaaacaagtcaaagtttcctgtttacactgtttgattagattcgttaatgcattgatggcagattttattccaggcctatagtacagatgcatatgcttctttgaaaatgcatttttgatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatgcaagtttGGACT-TAA-T--AACCACCCCCTTAT-CTAATTT-TCTAAGTGCCtactagcagtaaacttact
gi|3 : atttcactgtaaT--------CTAATGCAAAAAATGT--------------A-----TCACTACATGAGAAAGTGGAAACAAAAGTTCAC--CAAGTCGTACGTGGAATGACTCGGCTA------ATTTCCAAATACCAAC----TGACGAAAAAC--TTCCTGT---TTACAC
gi|3 : ctatgACTTCCTGTTTA------CACTGTTTGATTAGATTCGTtgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|3 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaAC-AACAGA-CATACT-TAA-T--AAGCATCCCCTTTTCCCAATTT-TCTAAGTGCCT--GGGGCACTCATA---AGGACAAATATGGTAtaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagctttacaacagacatacttaataagcatccccttttcccaattttctaagtgcctggggcactcataaggacaaatatggtattttaagtgactttaa
gi|4 : ctatgtctaatgcaaaaaatgtatcactacatgagaaagtggaaacaaaagttcaccaagtcgtacgtggaatgactcggctaatttccaaataccaactgacgaaaaacttcctgtttacactgtttgattagattcgttaaggtagtaatgttggattttattcctgaagtacaggggggacatactttcttgaaaatgcattttagatgaagatgcagatgcagtttaaaaagtatgcttcaacatattggattatctttttatacaatgcaagcttt--GAATGCAACAATTTTAGTTATTTTTC--AAGGCATATACGTGTCCA-----AC-TAC--TACAACATCCTTTAAAACTGCAACC---ATATTTGTCCACAG-GATTCT--TGACCTCTCTTTT-G-TTTCTAAAATGTGTCCCTCA-ATGGGATTCCAGATATT----TCTGTAA-ATATGAAATCCT--------CTGATGCAAGAAATGTACGAGTACTCAGACA-----TCACTCTGTGAGAAGGGGAAAATGAAAGTTTACTATAGGTCCTACATGGAATGACTCAACTA------ATTTCCAAATACCATC----TGACAAA-AAC--TTAA--T-----------------ACTG-----------AAAGTTGATTATTTCttttaagtgactttaa
gi|5 : ACCATAA-T--ACCTTTCTCTCTTTTTT--TTC-TCTAAGTGCTCACGTGGCACTCA-T---AGGACGAATACGGTA
gi|6 : taacgtagagctgtctgattttattcctagggtacaggggtttatatatatatatatatatgtacacgatacacttcttagatggggatgcagtaaaaaaaaacatgacattgtttcactatggatctatgctttaaatttctttttacacaaagcaagtttcataacacacagacataatagtgatgataatTCCATGTTTTCAAAA--ACATGCAACGACTTTA--------CCTTGAG-----CACATGTTCAT----ATATAC--TACACCATTCAATAAAACTGCAATCAC-ATATTTCCCCACAG-GATTATAATGTCCTCTCTTTTTG-TTTCTAAAATATGTCCTTTA-ATGGGATTCCAGATATC----TCTATAA-ACAAGAAATCCT--------CTAAT
gi|7 : CGTACATGGAATGATTCAACT---------TTGCAAATGCAGTC----TAATGTACTAC--TTAC--T---TTAAGCAAGTCAAAGTT-------------------------TCCTGTTTACACTTGCACTGTTTTATTAGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTAATAAAGTGATGTTTGAAAATATTCTTAAAGTACAGGGGCATACATGTATACTTCTAAAAATTAAAAATGCATTTTCAGATGAAGGGGACCGCAGTTAAGAAAAAGTATGTTTCTATACGGATGTATGCTTTACATATCATTTTACACAATGCA
Unaligned ( gi|9 ): TAAACTCGTACATGCGAAGAATAACAGCATTTTAATCCATGGCCGTAGAAGGTAGCATGTATAACTTCTTTGAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA