lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111 111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111 22222222222222222222222222222222
lowQualScore : 1 3 333 1 11 11 11 1111 11 3 777777777 222222 444444444 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 9999999999999999999999999999999999 2 6666666666 11111 333 11 11 1 22 222222 111 000000000000000000000000000 33 4444444 11 11 666 333333333333333333333333333333333333 22222 333333333 111 111 222222222 0000000000000000000000000000000000000000000000000000000000000000000000 11 4444444444444444444 222 111 2222222222 2222222 444444444 1 1 111 11 444444444 44 33 11 99999999999999999999999999999999999999999999999999 333 1111 111 111 1111 11111 1 1 22 44444444444444444444444444444444 4
lowQualScore : 77 3 0 777 0 33 33 00 1111 22 4 3 999999999 6 888888 000000000 2 2 444 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 2 44 0 2 5555555555555555555555555555555555 6 1 3 7 6 6666666666 7 7 99999 000 44 88 3 6 0 33 999999 6 3 888 444444444444444444444444444 8 11 3 2 3333333 11 11 5 1 99 777 3 6 1 6 888888888888888888888888888888888888 0 8 8 55555 6 99 999999999 11 111 111 555555555 0000000000000000000000000000000000000000000000000000000000000000000000 0 0 22 8 4444444444444444444 888 444 8888888888 3333333 77 222222222 9 0 0 777 33 222222222 3 22 44 22 33333333333333333333333333333333333333333333333333 000 2222 000 77 000 2222 5 22222 5 5 8 99999 6 4 7 66 66666666666666666666666666666666 0
lowQualScore : .. . . ... . .. .. .. .... .. . . ......... . ...... ......... . . ... ..................................................................................... . . .. . . .................................. . . . . . .......... . . ..... ... .. .. . . . .. ...... . . ... ........................... . .. . . ....... .. .. . . .. ... . . . . .................................... . . . ..... . .. ......... .. ... ... ......... ...................................................................... . . .. . ................... ... ... .......... ....... .. ......... . . . ... .. ......... . .. .. .. .................................................. ... .... ... .. ... .... . ..... . . . ..... . . . .. ................................ .
lowQualScore : 33 3 0 555 0 88 22 22 8888 00 2 2 888888888 0 888888 000000000 5 5 888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 5 00 2 5 9999999999999999999999999999999999 7 0 3 3 7 0000000000 3 3 77777 000 00 33 3 8 8 77 888888 0 2 000 222222222222222222222222222 0 00 2 5 3333333 00 00 0 0 22 555 5 7 7 7 222222222222222222222222222222222222 8 0 0 44444 0 22 666666666 88 777 777 777777777 2222222222222222222222222222222222222222222222222222222222222222222222 8 6 22 0 8888888888888888888 000 000 4444444444 5555555 00 000000000 8 0 0 555 88 888888888 2 22 88 00 33333333333333333333333333333333333333333333333333 000 1111 000 99 000 1111 7 66666 7 7 4 33333 0 0 0 00 00000000000000000000000000000000 0
consensus : NNNTTATGCTT-CCTGTTAGCTT--CTCT-C--TGTATA-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCTA-TGAAT-T-CATGTAGCGACC------GTGC---------ACTATGCCGA-A-TA----GTACTATA--GC-----A--CTATGCCG-GAAATACGTGAAGAA--T-AAAGTTTGT----G-TTNACG------CCGAC-GCGGGGAGTCNA-NCTCACGACGTCGCGGTTTG--G--N--G-TCCGGAAAGT-TAC-CG----CGACTGAGCTACGCAGGCCCATGAGCATTGAGTCGC-T-------AATTTTTATTATAAA--GTTAACATTGG-CCTCCAA-TTCT--AA-TACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGG-TAAATTGTA--AAGCATTCTA-T-------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGNCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAG-AACAAAC--AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAACTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG--C-------GG-C-----GA--T--T-TT--ATGA--A--AGAGA--CAG-AGGC-AAGCC--TG--TCGATGTTTTNAA-AAT---A-C-T---C--A----AAAAT-T-GG---ACTT-CG--CC---TCATCA---AAGTGTGGCGG--TG-----TTTAAT-GC-ACATT---ATGGACACTC--AGCATAATA--AT--TATTAATAATAATGTTACATTTTGCGTGTACTAGTGCCGAAATAGTAGTCAGGGTTTTGACGCATG------GTCC---------ACT--C---C----G------GC----TC-GTGGA-C-ATGCGTCAAAA----CCCTG---ACT--AC---TATTTC----GGC-ATAG--T-ACA-CGCAAAATGTA--A--CATTATTATTATTANTAACATATNAATT---ATGC--TGAGTG-------TCCATAA---TGTGCATTAAAAA
Reference ( gi|1 ) : TATTTATGGCT-CCT-TTAGCT---CTCT-C--TATATA-ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCTAATG----T-TATGTAGCAACC------GTGC---------ACTATGCCGA-A-TA----G-ACTATA-TGC-----A--CTA--CCAGAAAATACGTGAAAGA--T-AAAATTTGT----G-T-AAC-------CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--T--G-TCCGGA---C-TAC-CGTT--CGACTGAGCTACACAGGCCAATGAGCATTGAGTCG--T-------AATTTTTATTATAAA--GTGAACATT-G-CCTCCAG-TTCT--AA-TACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTG-TGAATTGTG--AAGCATTCTACT-------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAG-AACAAAT-TAAAATATGAGT-TGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAACTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG--C-------GGTC-----GA--T--T-T---ATGA--A--AGGGA--CAG-AGG--AAGC---TG--TCGATGTTTTAAA-AAT---G-C-T---C--A----AAAAT---GG---ACTT-CA--CC---TCATCA---AAGTGTGGCAG--TG-----TTTAAT-GC-ACATT---ATGGACACTC--AGCATAATA--ATGATATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGACGCATA------G------------A-------------G------GC----TC-GTGGA-C-ATGCGTCAAAA----CCCTG---ACT--AC---TATTTT----GGC-ATGA--T-ACA-CTCAAAATGTA--A--CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGC-TTAAAAATCATTTTTGCATTTATTTTTGTTCACCTGCT
gi|3 : TTATGCTT-CCTGTTAGCTTTTCCCT-C--TATATA--TCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCTA-TGCAATT-TATGTAGTGATT------GTCC---------ACTAT----A-G-TA-------CTATG--GC-----A------------AAATACGTGAAGAAATT-AAAATTTGT----G-TTAACG------CCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATT-G--G--T--GGCCCAGA------GCGCGTTACTGACTGAGCTACATAGGCCCATGAGCATTGAGTCG--TTACCGGTAATATTTATTATAAA--GTTAACTTT-GGCCTCCAG-TTCT--AAATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGG-TATATTGTA--AAGCATTCTATTAAAGCATTCTATTAAAGCATTCTATAGA-CGATT-ACTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTGAAT-AG-AACA
gi|7 : taTATGCTT-CCTGTTAGCTT--CTCT-C--TGTATA-ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCTA-TGAAT-T-CATGTAGCGACC------GTGC---------ACTATGCCGA-AATA----GTACTATA--GC-----A--CTATGCCG--AAATACGTGAAGAA--TTAAAGTTTGT----G-TTCACG------CCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTT----G--TCGG-TCCGGAAAGT-TAC-CG------ACTGAGCTACGCAGGCCCATGAGCATTGAGTCGT-T-------AATTTTTATTATAAA--GTTAACATTGG-CCTCCAATTTCA--AA-TACCCCTTTTTAAGAATTTAAAATcccaaaat
gi|6 : GCTACCTGTTAGCTT--CTCTTC--TGTATATATTATATAT-TTTCACCATTTTCGCATAGT-GTTCTA-TGAAT-T-CATGTAGCGACC------GTGC---------ACTATGCCGA-A-TA----GTACTATA--GCAAAAAA--CTATGCC--GAAATACGTGAGAAT--T-AAAGTTTGT----GTT-CACG------CCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTGTCG--G--G-TCCGGAAAGT-TAC-------CGACTGA-CTACGCAGGCC-ATGAGCA-TGA-TCGCTT-------AA-TTTTA-TATAAAAGATTAACATTGG-CCTCCAA-TTTTCAAA-TACCCCTTTTTAAGAA-TTAAAAT
gi|10 : t-TTAGCT---CTCT-CCCTATATC-ATCAC-TATGTC-CACCATCTTCGCATAGTAGT-CTAATGAA--TATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAGACA-TAATGCG-ACAATAGTAC-----ATCCTATGCCA-ACAGTA-GTGCCA-A--C-AACATCCGTCGGAG---AACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGC-GTCTA--GACG--G-TCCGGG---CTTAC-C
gi|2 : tatattgcctttctagCACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGG-TAAATTGTA--AAGCATTCTA-T-------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAGAAACAAAC------TATGAGT-------AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------ACTAAACATGC---GATGAATTTC---AGT-AT----A-AAACTGCG--C-------GG-C-----GA--T--TGT---ATG------AGAGA--CAG-AGGC-CAGCA--TG--TCGATGTTTT-AA-AAT---A-C-T---CAAA----AAAAT---GG---ACTT-CG--CC---TCATCA---AAGTGTGCCAG--TGGTGTTTTTAAT-GC-ACATT---ATGGACACTC--AGCATAATAATATGTTAATAATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGACGCATGATCCACG------------A-------------GCCGAAAGCGAGACA-GTGGA-CTATGCGTCAAAA----CCCTG---ACT--AC---AAATTC----GGC-ATAG--T-ACA-CGCAAAATGTA--A--CATTATTA-TATTa
gi|8 : TTTTTAAGAGTTTGAAATCATTTTTTT--TGTAAT------TAAA-------AAGCAGACTG-T-------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTG--TAAA-AACAAA------AGATGAGT-------AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAACAAAACATGC---AATGAATTTC---AGT-AT----A-AAACT
gi|16 : TGTAAT--TTGGTAAATTGTGTAAAGCATTCTA-T-------------------------AGATTGATT-ATTCTGAAA
gi|17 : atAGCATTCTA-T-------------------------AGA-TGATTA-TTCTGAAA-GCAATAGATAGGCCT
gi|5 : AAAGTCTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGT-TGT-ACGTCATTACTGTTG--ATTCGT-CT-AATC-----CAGCTGTAAAACATAAACATGT---AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC----AAAAATAAACATGC---GATGAATTTC---AGT-AT------AAACTGCG--C----------C------A--T--T-TTAGATGAGGA--AGAGG--CAA-GGG--A--C---T-----GATGGTTTAAATAGT---GACAT---C--ATGTGAACATATCGA---GCTC-CT--CT---CCATCA--------TGGTTG---G-----TTT-AT-GA-TCATTAAAATGGACACTC--AG
gi|13 : tatagactattacccttccattacatgttaaagcgTTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCA------ATGTGAT--GT-CT---------------------------T-TGTCTGAATC-AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGT
gi|4 : CAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTGAATCAG-AA---AC--AAAATATGAGT-TG------CCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT----------TGAAT---C---GATGAATTTC---AGTA-T----A-AAACTGCG--C-------GG-C-----GA--T--T-TT--ATGA------GAAA--CAG--GC--AAGCC--TG--TCGATGTTTTTAA-AAT---A-C-T---C--A----AAAAT---GG---ACTTACA--CC---TCATCA---AA--GTGGTGG--TGT----TTTTAT-GC-ACATT---ATGGACACTC--AGCATAATA--A------TAATAATAATGTTACATTTTGCGTGTACT-ATGCCAAAATAGTAGTCAGGGTTTTGACGCATC------GTCC---------ACTCGCCTTC----G------GC----TC-GTGGACC-ATGCGTCAAAA----CCCTG---ACT--AC---TATTTC----GGC-ATAG--T-ACA-CACAAAATGTA--A--CATTATTA-TAATAAT
gi|9 : CCAACATCTAA--TGTTCAAAAAACCTACACAAGCATAGA-AAATTCCCTTAGTAATCAAGA-AAACTCCG--CATCGCTGGAAC-----GAATT--T-T---ATGA--AGTAGAAATTTAGTAGC--AAAC---CG--T-AA------AAA-AATAAAA-C-TAACC--A----AAAACCTAGGAATACTT-TAGTCCGTATAGTCAAGGAAGTGTGGTGGTTTG-----TTCAGTGGCAAAAAT---ATGGACCTTCCGAGCATAATA--AT-AGATTA
gi|12 : ctttttaggagtcatccGC---GATGAATTT-------AAT----ATAAACTGCAACT-------GGTCCGGCGGA--TGTT-T---ATGA--G--AGG-A--CAG-AGGCAAGGCCTTTGCTTCGATGTTTATAA-AAT---A-C-TC--C--A----AAAAT---GG---ACTT-----GC---TCATCA---A
gi|4 : TATTA-TAATAATGTTACATTTTGTGTGTACTA-TGCCGAAATAGTAGTCAGGGTTTTGACGCATG------GTCCACGAGCCGAA-------------G------GC----GA-GTGGA-CGATGCGTCAAAA----CCCTG---ACT--AC---TATTTT----GGC-ATAG--T-ACA-CGCAAAATGTA--A--CATTATTATTATTATTAgag
gi|2 : caacgtcattggaaacgtttgtgacgtcaatgtgatgtcattcgttctgaatcagaaacaaaatatgagttgcctaattcgtttcagggactgaagctttatttagggatcaacatctaatgttgaatcgatgaatttcagtataaaactgcgcggcgattttatgagaaacaggcaagcctgtcgatgtttttaaaatactcaaaaatggacttacacctcatcaaagtggtggtgtttttatgcacattatggacactcagcaATAATAATGTTACATTTTGCGTGTACTA-TGCCGAATTTGTAGTCAGGGTTTTGACGCATA------GTCC---------ACTGTCTCGCTTTCG------GC----TC-GTGGATC-ATGCGTCAGAA----CCCTG---ACT--AC---TATTTT----GGC-ACAG--T-GCA-CGCAAAATGTA--A--CATTAT---TATTATTAACATATT-ATT---ATGC--TGAGTG-------TCCATAA---TGTGCATTAAAAAat
gi|11 : cacttttaaaaatttaaaatcaactttttattgtaatgctggtaaattgtaaagcattctatagatgattactctgaaaaacaatagatagggctatatcgccgtaaaagttctcaatattgatttgtaagcaaccaacgtcattggaaacgtttgtgacgtcaatgtgatgtcattcgtctgaatcagaaacaaactatgagtagcctatccgtttcgggactgacgaaccagctttatttagggaccaacatcactaaacatgcgatgaatttcagtataaaactgcgcggcgattgtatgagagacagaggccagcatgtcgatgttttaaaatactcaaaaaaatggacttcgcctcatcaaagtgtgccagtggtg-------------G------GC----TCTGTGGA-CCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TATTCT----TGCTATTAGTT-ACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATatt
gi|14 : tatggacatctgcGTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-ATAA--T-ACA-CTTATAATGTA--A--TATTATTattgtg
gi|15 : ttggctctagcactaaAA----TCCTG---ACT--A----TATTTT----GAC-A-GA--TTACA-CGCAAAATGtgataggatatgatgat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA
Alignments
lowQualScore : 22222222222222222222222222222222
lowQualScore : 1 222222 333333333 111 1111 333333333333333333 11 11 22222222 222222 2222 5555 3333333 11 1 22 1 11 66666666666666666666666666 22 3333333 444444444444 3333333333 22222222222 111 111 111111111 444444444444444444444 1111 222222222222 111 111111111 22222222 111 22222 111 111 111111 11 111 11 4444444444 22 1 555555555555555555555555 3 1111 111 111 1111 111 1 44444444444444444444444444444444 4
lowQualScore : 8 88 8 1 6 8 8 8 8 8 8 88 333333 222222222 0 111 4444 8 666666666666666666 8 11 1 99 0 1 99999999 11 1 8 1 99 0 333333 3333 0000 2 2 3 2 9999999 3 33 2 0 33 1 3 0 0 11 6 99999999999999999999999999 6 22 3 1 2222222 0 99 2 77 5 0 5 66 555555555555 6666666666 6 6 22 88 3 77 88888888888 000 000 666666666 000000000000000000000 6 6666 1 99 3 111111111111 9 6 888 6 555555555 55555555 111 33333 1 111 0 444 2 222222 44 8 8 444 11 0000000000 2 88 6 2 3 0 6 3 222222222222222222222222 0 4444 111 99 111 4444 6 6 6 6 5 444 8 5 1 4 1 66666666666666666666666666666666 0
lowQualScore : . .. . . . . . . . . . .. ...... ......... . ... .... . .................. . .. . .. . . ........ .. . . . .. . ...... .... .... . . . . ....... . .. . . .. . . . . .. . .......................... . .. . . ....... . .. . .. . . . .. ............ .......... . . .. .. . .. ........... ... ... ......... ..................... . .... . .. . ............ . . ... . ......... ........ ... ..... . ... . ... . ...... .. . . ... .. .......... . .. . . . . . . ........................ . .... ... .. ... .... . . . . . ... . . . . . ................................ .
lowQualScore : 0 88 0 4 0 0 0 0 0 0 0 88 000000 000000000 8 888 8888 0 666666666666666666 0 00 4 00 8 4 00000000 88 4 0 0 00 6 000000 8888 0000 5 5 2 5 2222222 2 88 5 0 88 0 2 0 8 00 7 22222222222222222222222222 7 88 2 0 5555555 8 22 5 99 7 1 7 44 666666666666 3333333333 7 7 00 22 5 99 33333333333 000 000 999999999 888888888888888888888 7 5555 7 22 5 000000000000 8 7 333 7 000000000 77777777 777 33333 0 777 8 000 8 888888 00 0 0 000 00 0000000000 5 22 0 5 2 0 5 2 888888888888888888888888 0 2222 777 22 777 2222 7 7 7 7 2 000 0 5 0 0 0 00000000000000000000000000000000 0
consensus : NNNTTATGCTTCCT-GTTAGCT-TCTCT-CTGTATATATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCG-A-ATAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTAC----CGACTGAGCTACGCAGGCCCATGAGCATTGAGTCGT------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--A-CAAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAA--G-CCT--G--TCGATGTTTT-AA-AAT---AC-T---C-A---AAA---A--TTGG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAA----T--TA-TAATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-AT-AGT-ACA-CNCAAAATGTA---A-CATTATTATTATTAATAACANATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGC-TTAAAAA
Reference ( family-6180 ) : NNNTTATGCTTCCT-GTTAGCT-TCTCT-CTGTATA-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCG-A-ATAGT---ACTATA-GC-----A----CTATGCCGGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTNACGCCGAC-GCGGGGAGTCNA-NCTCACGACGTCGCGGTTTG--G--NGTCCGGA--AAGTTACCG--CGACTGAGCTACGCAGGCCCATGAGCATTGAGTCGC------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAA-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGNCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--A-CAAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAA--G-CCT--G--TCGATGTTTTNAA-AAT---AC-T---C-A---AAA---A--TTGG---ACTT-----CGCCTCATCA---AAGTGTG---GCGG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAA----T--TATTAATAATAATGTTACATTTTGCGTGTACTAGTGCCGAAATAGTAGTCAGGGTTTTGAC-GCATGGTCCAC--TC-----CG---GC----TC-GTGGAC-ATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-AT-AGT-ACA-CGCAAAATGTA---A-CATTATTATTATTANTAACATATNAATT---ATGC--TGAGTG-------TCCATAA---TGTGCATTAAAAA
gi|1 : TTATGGCTCCT--TTAGCT--CTCT-CTATATA-ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCT-AATG----TTATGTAGCAACC------GTGC---------ACTATGCCG-A-ATAG----ACTATATGC-----A----CTA--CCAGAAAATACGTG--AAAGA--TAAAATTTGT--------GT-AAC-CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--TGTCCGGA-----CTACCGTTCGACTGAGCTACACAGGCCAATGAGCATTGAGTCG-------TAATTTTTATTATAAA--GTGAACATTG-CCTCCAG-TTCT--AATACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTGTGAATTGT--GAAGCATTCTACT--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--ATTAAAATATGAGT-TGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GGT-CG-A--TTTATGAA--AGGGA--CAGAGG-AA--G--CT--G--TCGATGTTTTAAA-AAT---GC-T---C-A---AAA---A---TGG---ACTT-----CACCTCATCA---AAGTGTG---GCAG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAA----TGATATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGAC-GCATAG---A-----------G---GC----TC-GTGGAC-ATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTTGGC-AT-GAT-ACA-CTCAAAATGTA---A-CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGC-TTAAAAA
gi|10 : tatCTTTCTAGTTAGCTCTCTCC-CTATATC-ATCAC-TATGTC-CACCATCTTCGCATAGT-AGTCTAA-TG-AATATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAG-ACATAATGCGACAATA-GT-----ACATCCTATGCCAACAG-TA-GTGCCAACAA--CA---TCCGTCGGAGAACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGC-GTCTA--GACGGTCCGGtcatttttgcatttatttttgttcacctgct
gi|11 : tatattgcC--TG-----CG---GC----TCTGTGGACCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TA----TTCTTGCTATTAGTTACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATgcttacca
gi|12 : tatggacatGC---GATGAATTT-------AAT----ATAAACTGCAACTGGTCC------GG--CGGATGTTTATGAG--AG-GA--CAGAGGCAA--GGCCTTTGCTTCGATGTTTATAA-AAT---AC-T---C-C---AAA---A--ATGG---ACTT------G-CTCATCA---Aattgtg
gi|13 : TTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCAA------TGTGAT--GT-CTT-TGTC------------------TGAAT-C----------AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGTgag
gi|14 : GTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-AT-AAT-ACA-CTTATAATGTA---A-TATTATT
gi|15 : ttggctctagcactaaAA----TCCTG---ACT--A----TA----TTTTGAC-AG-ATT-ACA-CGCAAAATGtgataggatatgatgat
gi|15 : CATTTTGCGTGTAAT-CTGTCAAAATA-TAGTCAGGA--TTGATGGCATTGTCgatggcattgtcagagc
gi|16 : ATTGTAAT-TTGGTAAATTGTGTAAAGCATTCTA-T--------------------------AGATTGATT-ATTCTGAAAagagc
gi|17 : AGCATTCTA-T--------------------------AGA-TGATT-ATTCTG-AAAGCAATAGATAGGCCT
gi|2 : CACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAG---AA--A-CAAACTATGA----GT---AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------A-CTAAACATGC---GATGAATTTC---AGT-AT----A-AAACTGCG-------C------GG--CG-AT-TGTATG----AGAGA--CAGAGGCCA--G-CAT--G--TCGATGTTTT-AA-AAT---AC-T---CAA---AAA---A--ATGG---ACTT-----CGCCTCATCA---AAGTGTGCCAGTGG--TGTTTTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATATGT--TAATAATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGAC-GCATGATCCACGAGC-----CGAAAGCGAGACA-GTGGACTATGCGTCAAAA----CCCTG---ACT--AC---AA----ATTCGGC-AT-AGT-ACA-CGCAAAATGTA---A-CATTATTA-TATT
gi|3 : TTATGCTTCCT-GTTAGCT-TTTCC-CTCTATATATCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCT-A-TGCAATTTATGTAGTGATT------GTCC---------ACT---------ATAGT---ACTATG-GC-----A-------------AAA-TACGTG--AAGAAATTAAAATTTGT--------GTTAACGCCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATTGG--T--GGCCCAGAGCGCGTTAC----TGACTGAGCTACATAGGCCCATGAGCATTGAGTCGTTACCGGTAATATTTATTATAAA--GTTAACTTTGGCCTCCAG-TTCTA-AATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGGTATATTGT--AAAGCATTCTA-TTAAAGCATTCTATTAAAGCATTCTATAGA-CGATT-ACTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTG-AAT-AGAACAC--C-CAAAAT
gi|4 : taCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTG-AATCAGAA-----A-CAAAATATGAGT-TG------CCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT-----------TGAAT---C---GATGAATTTC---AGTA-T----A-AAACTGCG-------C------GG--CG-AT-TTTATGA----GAAA--CAG--GCAA--G-CCT--G--TCGATGTTTTTAA-AAT---AC-T---C-A---AAA---A--T-GG---ACTTA----CACCTCATCA---AAGTG-----GTGG--TG--TTTTTAT-GC-ACATT---ATGGACACTC--AGCATAATAA----T------AATAATAATGTTACATTTTGCGTGTACTA-TGCCAAAATAGTAGTCAGGGTTTTGAC-GCATCGTCCAC--TCGCCTTCG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-AT-AGT-ACA-CACAAAATGTA---A-CATTATTATAAT
gi|5 : AAAGT-CTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGTT-GT-ACGTCATTACTGTTG--ATTCGT-CT--AATC----CAGCTG-TAAAACATAAACATGT---AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC--A-AAAA--TAAACATGC---GATGAATTTC---AGT-AT------AAACTGCG-------C----------C--AT-TTTA--GA--TGAGG--AAGAGGCAAGGG-ACT-------GATGGTTTAAATAGTG--ACAT---C-ATGTGAACATA--TCGA---GCTC-----CTCTCCATCA--------TG---GTTG---G--TTT--AT-GA-TCATTAAAATGGACACTC--AGaat
gi|6 : tatagactattacccttccattacatgttaaagcgTGCTACCT-GTTAGCT-TCTCTTCTGTATATATTATATAT-TTTCACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCG-A-ATAGT---ACTATA-GCAAAAAA----CTATGCC-GAAA-TACGTG--AGAAT--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTGTCG--GGTCCGGA--AAGTTAC----CGACTGA-CTACGCAGG-CCATGAGCA-TGA-TCGC------TTAATTTTA-TATAAAAGATTAACATTGGCCTCCAA-TTTTCAAATACCCCTTTTTAAGAA-TTAAAAT
gi|7 : TATGCTTCCT-GTTAGCT-TCTCT-CTGTATA-ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGAA-ATAGT---ACTATA-GC-----A----CTATGCC-GAAA-TACGTG--AAGAAT-TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTTGT--C--GGTCCGGA--AAGTTAC----CGACTGAGCTACGCAGGCCCATGAGCATTGAGTCGT------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAATTTCA--AATACCCCTTTTTAAGAATTTAAAAT
gi|8 : TTTTTAAGAGTTTGAAATCA--TTTTTTTTGTAAT-----TAAA-------AAGCAGACTG-T--------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTGTAA-------AA--A-CAAAAGATGA----GT---AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAA-CAAAACATGC---AATGAATTTC---AGT-AT----A-AAACT
gi|9 : CCAACATCTAA--TGTTCAA-AAAACCTACACAAGCATAGA-AAATTCCCTTAGTAATCAAGA-AAACTCCG-------CATCGCTGGAACGAAT-TTTATGAAGTAGAAATTTAGTAGCAA--A-CC---G--TAAA-------AA-AATAAAAC-TAACC-A---AAA---ACCTAGGAATACTTTAGTCCGTATAGTCAAGGAAGTGTG---GTGGTTTG--TTCA-GTGGCAAAAAT---ATGGACCTTCCGAGCATAATAA----T--
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA
Alignments
lowQualScore : 1 11 222222 333333333 1111 333333333333333333 11 11 22222222 22222 2222 2222 333333333 11 1 22 1 11 66666666666666666666666666 22 3333333 444444444444 3333333333 22222222222 111 111 111111111 444444444444444444444 1111 222222222222 111 111 111111111 22222222 111 22222 111 111 111111 11 111 11 777777777 22 1 444444444444444 1111 1111 111 11 111111111 111 2
lowQualScore : 8 0 8 3 88 8 8 8 8 8 8 88 333333 222222222 0 8 8 4444 8 000000000000000000 8 11 1 99 0 1 99999999 0 1 8 99 0 22222 3333 1111 2 2 3 2 333333333 3 3 33 2 0 33 1 3 0 0 11 6 99999999999999999999999999 6 22 3 2222222 0 99 2 77 5 0 5 66 555555555555 6666666666 6 6 22 88 3 77 88888888888 000 000 666666666 000000000000000000000 6 6666 1 99 3 111111111111 555 99 888 6 555555555 55555555 111 33333 1 111 0 444 222222 44 8 8 444 11 111111111 2 66 2 2 3 0 1 3 777777777777777 7777 8 7777 444 11 888888888 8 8 8 8 1 444 8 7 1 1
lowQualScore : . . . . .. . . . . . . .. ...... ......... . . . .... . .................. . .. . .. . . ........ . . . .. . ..... .... .... . . . . ......... . . .. . . .. . . . . .. . .......................... . .. . ....... . .. . .. . . . .. ............ .......... . . .. .. . .. ........... ... ... ......... ..................... . .... . .. . ............ ... .. ... . ......... ........ ... ..... . ... . ... ...... .. . . ... .. ......... . .. . . . . . . ............... .... . .... ... .. ......... . . . . . ... . . . .
lowQualScore : 0 6 0 2 66 0 0 0 0 0 0 88 000000 000000000 8 0 0 8888 0 666666666666666666 0 00 4 00 8 4 00000000 8 4 0 44 6 00000 8888 2222 5 5 2 5 000000000 2 2 88 5 0 88 0 2 0 8 00 7 22222222222222222222222222 7 88 2 5555555 8 22 5 99 7 1 7 44 666666666666 3333333333 7 7 00 22 5 99 33333333333 000 000 999999999 888888888888888888888 7 5555 7 22 5 000000000000 000 22 333 7 000000000 77777777 777 33333 0 777 8 000 888888 00 0 0 000 00 888888888 5 22 5 0 2 0 0 2 000000000000000 0000 0 0000 000 00 222222222 0 0 0 0 0 000 0 8 0 0
consensus : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--A-CAAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAA--G-CCT--G--TCGATGTTT-T-AA--AAT---AC-T---C-A---AAA---A--TTGG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATG-T----A-TAATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-AT-AGT-ACA-CTCAAAATGTA---A-CATTATTA-TATTAATAACANATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
Reference ( family-6180 ) : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTGTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--A-CAAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAA--G-CCT--G--TCGATGTTT-T-AA--AAT---AC-T---C-A---AAA---A--TTGG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAAT--T----A-TAATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-AT-AGT-ACA-CNCAAAATGTA---A-CATTATTATTATTAATAACANATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|1 : TTATGGCTCCT--TTAGCT-CTCT-CTATATA--ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCT-AATG----TTATGTAGCAACC------GTGC---------ACTATGCCGA-A-TAG----ACTATATGC-----A----CTA--CCAGAAAATACGTG--AAAGA--TAAAATTTGT--------GT-AAC-CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--TGTCCGGA-----CTACCGTTCGACTGAGCTACACAGGCCAATGAGCATTGAGTCG-T-------AATTTTTATTATAAA--GTGAACATT-GCCTCCAG-TTCT--AATACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTGTGAATTGT--GAAGCATTCTACT--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--ATTAAAATATGAGT-TGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GGT-CG-A--TTTATGAA--AGGGA--CAGAGG-AA--G--CT--G--TCGATGTTT-TAAA--AAT---GC-T---C-A---AAA---A---TGG---ACTT-----CACCTCATCA---AAGTGTG---GCAG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATGAT----ATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGAC-GCATAG---A-----------G---GC----TC-GTGGA-CATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTTGGC-AT-GAT-ACA-CTCAAAATGTA---A-CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|10 : tatCTTTCTAGTTAGCT-CTCT-CCCTATATCATCAC-TATGTC-CACCATCTTCGCATAGT-AGTCTAA-TG-AATATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAGACA-TAATGCGACAATA-GT-----ACATCCTATGCCAACAG-TA-GTGCCAACAA--CA---TCCGTCGGAGAACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGC-GTCTA--GACGGTCCGGtcatttttgcatttatttttgttcacctgct
gi|11 : tatattgcC--TG-----CG---GC----TCTGTGGACCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TA----TTCTTGCTATTAGTTACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATgcttacca
gi|12 : tatggacatGC---GATGAATTT-------AAT----ATAAACTGCAACTGGTCC------GG--CGGATGTTTATGAG--AG-GA--CAGAGGCAA--GGCCTTTGCTTCGATGTTTAT-AA--AAT---AC-T---C-C---AAA---A--ATGG---ACTT------G-CTCATCA---Aattgtg
gi|13 : TTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCAA------TGTGAT--GT-CTT-TGTC------------------TGAAT-C----------AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGTgag
gi|14 : G---GC----TC-TAGCACTAAGTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-AT-AAT-ACA-CTTATAATGTA---A-TATTATT
gi|15 : ttCATTTTGCGTGTAAT-CTGTCAAAATA-TAGTCAGGA--TTGATGGCATTGTCtgataggatatgatgat
gi|16 : ATTGTAAT-TTGGTAAATTGTGTAAAGCATTCTA-T--------------------------AGATTGATT-ATTCTGAAAagagc
gi|17 : AGCATTCTA-T--------------------------AGA-TGATT-ATTCTG-AAAGCAATAGATAGGCCT
gi|2 : CACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAG---AA--A-CAAACTATGA----GT---AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------A-CTAAACATGC---GATGAATTTC---AGT-AT----A-AAACTGCG-------C------GG--CG-AT-TGTATG----AGAGA--CAGAGGCCA--G-CAT--G--TCGATGTTT-T-AA--AAT---AC-T---CAA---AAA---A--ATGG---ACTT-----CGCCTCATCA---AAGTGTGCCAGTGG--TGTTTTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATA-TGTTAA-TAATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGAC-GCATGATCCACGAGC-----CGAAAGCGAGACA-GTGGACTATGCGTCAAAA----CCCTG---ACT--AC---AA----ATTCGGC-AT-AGT-ACA-CGCAAAATGTA---A-CATTATTA-TATT
gi|3 : TTATGCTTCCT-GTTAGCTTTTCC-CTCTATAT-ATCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCT-A-TGCAATTTATGTAGTGATT------GTCC---------ACT--------A-TAGT---ACTATG-GC-----A-------------AAA-TACGTG--AAGAAATTAAAATTTGT--------GTTAACGCCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATTGG--T--GGCCCAGAGCGCGTTACTG----ACTGAGCTACATAGGCCCATGAGCATTGAGTCG-TTACCGGTAATATTTATTATAAA--GTTAACTTTGGCCTCCAG-TTCTA-AATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGGTATATTGT--AAAGCATTCTA-TTAAAGCATTCTATTAAAGCATTCTATAGA-CGATT-ACTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTG-AAT-AGAACAC--C-CAAAAT
gi|4 : taCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTG-AATCAGAA-----A-CAAAATATGAGT-TG------CCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT-----------TGAAT---C---GATGAATTTC---AGTA-T----A-AAACTGCG-------C------GG--CG-AT-TTTATGA----GAAA--CAG--GCAA--G-CCT--G--TCGATGTTT-TTAA--AAT---AC-T---C-A---AAA---A--T-GG---ACTTA----CACCTCATCA---AAGTG-----GTGG--TG--TTTTTAT-GC-ACATT---ATGGACACTC--AGCATAATAAT----------AATAATAATGTTACATTTTGCGTGTACTA-TGCCAAAATAGTAGTCAGGGTTTTGAC-GCATCGTCCAC--TCGCCTTCG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-AT-AGT-ACA-CACAAAATGTA---A-CATTATTA----TAATAA
gi|5 : AAAGT-CTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGTT-GT-ACGTCATTACTGTTG--ATTCGT-CT--AATC----CAGCTG-TAAAACATAAACATGT---AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC--A-AAAA--TAAACATGC---GATGAATTTC---AGT-AT------AAACTGCG-------C----------C--AT-TTTA--GA--TGAGG--AAGAGGCAAGGG-ACT-------GATGGTT-T-AAATAGTG--ACAT---C-ATGTGAACATA--TCGA---GCTC-----CTCTCCATCA--------TG---GTTG---G--TTT--AT-GA-TCATTAAAATGGACACTC--AGt
gi|6 : tatagactattacccttccattacatgttaaagcgTGCTACCT-GTTAGCTTCTCTTCTGTATAT-ATTATATAT-TTTCACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GCAAAAAA----CTATGCC-GAAA-TACGTG--AGAAT--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTGTCG--GGTCCGGA--AAGTTACCG----ACTGA-CTACGCAGG-CCATGAGCA-TGA-TCGCT------TAA-TTTTA-TATAAAAGATTAACATTGGCCTCCAA-TTTTCAAATACCCCTTTTTAAGAA-TTAAAAT
gi|7 : TATGCTTCCT-GTTAGCTTCTCT-CTGTATA--ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-AATAGT---ACTATA-GC-----A----CTATGCC-GAAA-TACGTG--AAGAAT-TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTTGT--C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAATTTCA--AATACCCCTTTTTAAGAATTTAAAAT
gi|8 : TTTTTAAGAGTTTGAAATCA--TTTTTTTTGTAAT-----TAAA-------AAGCAGACTG-T--------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTGTAA-------AA--A-CAAAAGATGA----GT---AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAA-CAAAACATGC---AATGAATTTC---AGT-AT----A-AAACT
gi|9 : CCAACATCTAA--TGTTCAA-AAAACCTACACAAGCATAGA-AAATTCCCTTAGTAATCAAGA-AAACTCCG-------CATCGCTGGAACGAAT-TTTATGAAGTAGAAATTTAGTAGCAA--A-CC---G--TAAA--------AA--AATAAAAC-TAACC-A---AAA---ACCTAGGAATACTTTAGTCCGTATAGTCAAGGAAGTGTG---GTGGTTTG--TTCA-GTGGCAAAAAT---ATGGACCTTCCGAGCATAATAAT--
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA
Alignments
lowQualScore : 1 11 222222 333333333 1111 333333333333333333 11 11 22222222 22222 2222 2222 333333333 11 1 22 1 11 66666666666666666666666666 22 3333333 4444444444444 3333333333 22222222222 111 111 111111111 444444444444444444444 1111 222222222222 111 111111111 22222222 111 22222 111 111 111111 11 111 11 6666666666 22 1 444444444444444 1111 1111 111 11 111111111 11111
lowQualScore : 8 0 8 1 88 8 8 8 8 8 8 88 333333 222222222 0 8 8 4444 8 000000000000000000 8 11 1 99 0 1 99999999 0 1 8 99 0 22222 3333 1111 2 2 3 2 333333333 3 3 33 2 0 33 1 3 0 0 11 6 99999999999999999999999999 6 22 3 2222222 0 99 2 77 5 0 5 66 3333333333333 6666666666 6 6 22 88 3 77 88888888888 000 000 666666666 000000000000000000000 6 6666 1 99 3 111111111111 888 99 6 888 6 555555555 55555555 111 33333 1 111 0 444 222222 44 8 8 444 11 4444444444 2 66 2 2 3 0 1 3 777777777777777 7777 8 6 7777 444 11 888888888 8 8 8 8 1 33333 0 8 3 1 1
lowQualScore : . . . . .. . . . . . . .. ...... ......... . . . .... . .................. . .. . .. . . ........ . . . .. . ..... .... .... . . . . ......... . . .. . . .. . . . . .. . .......................... . .. . ....... . .. . .. . . . .. ............. .......... . . .. .. . .. ........... ... ... ......... ..................... . .... . .. . ............ ... .. . ... . ......... ........ ... ..... . ... . ... ...... .. . . ... .. .......... . .. . . . . . . ............... .... . . .... ... .. ......... . . . . . ..... . . . . .
lowQualScore : 0 6 0 0 66 0 0 0 0 0 0 88 000000 000000000 8 0 0 8888 0 666666666666666666 0 00 4 00 8 4 00000000 8 4 0 44 6 00000 8888 2222 5 5 2 5 000000000 2 2 88 5 0 88 0 2 0 8 00 7 22222222222222222222222222 7 88 2 5555555 8 22 5 99 7 1 7 44 7777777777777 3333333333 7 7 00 22 5 99 33333333333 000 000 999999999 888888888888888888888 7 5555 7 22 5 000000000000 333 22 7 333 7 000000000 77777777 777 33333 0 777 8 000 888888 00 0 0 000 00 0000000000 5 22 5 0 2 0 0 2 000000000000000 0000 0 4 0000 000 00 222222222 0 0 0 0 0 00000 8 0 7 0 0
consensus : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAA--G-CCT--G--TCGATGTTT-T-AA--AA-T---AC-T---C-A---AAA---A--T-GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
Reference ( family-6180 ) : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAA--G-CCT--G--TCGATGTTT-T-AA--AA-T---AC-T---C-A---AAA---A--TTGG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAACANATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|1 : TTATGGCTCCT--TTAGCT-CTCT-CTATATA--ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCT-AATG----TTATGTAGCAACC------GTGC---------ACTATGCCGA-A-TAG----ACTATATGC-----A----CTA--CCAGAAAATACGTG--AAAGA--TAAAATTTGT--------GT-AAC-CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--TGTCCGGA-----CTACCGTTCGACTGAGCTACACAGGCCAATGAGCATTGAGTCG-T-------AATTTTTATTATAAA--GTGAACATTG-CCTCCAG-TTCT--AATACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTGTGAATTGT--GAAGCATTCTACT--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--ATTAAAATATGAGT-TGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GGT-CG-AT-TT-ATGAA--AGGGA--CAGAGG-AA--G-C-T--G--TCGATGTTT-T-AA--AAAT---GC-T---C-A---AAA---A--T-GG---ACTT-----CACCTCATCA---AAGTGTG---GCAG--TG--TTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATGAT----ATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGAC-GCATAG---A-----------G---GC----TC-GTGGAC-ATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTTGGC-A-TGA-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|10 : tatCTTTCTAGTTAGCT-CTCT-CCCTATATCATCAC-TATGTC-CACCATCTTCGCATAGT-AGTCTAA-TG-AATATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAGACA-TAATGCGACAATA-GT-----ACATCCTATGCCAACAG-TA-GTGCCAACAA--CA---TCCGTCGGAGAACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGC-GTCTA--GACGGTCCGGtcatttttgcatttatttttgttcacctgct
gi|11 : tatattgcC--TG-----CG---GC----TCTGTGGACCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TA----TTCTTGCTATTAGTTACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATgcttacca
gi|12 : tatggacatGC---GATGAATTT-------AAT----ATAAACTGCAACTGGTCC------GG--CGGATGTTTATGAG--AG-GA--CAGAGGCAA--GGCCTTTGCTTCGATGTTTAT-AA--AA-T---AC-T---C-C---AAA---A--ATGG---ACTT------G-CTCATCA---Aattgtg
gi|13 : TTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCAA------TGTGAT--GT-CTT-TGTC------------------TGAAT-C----------AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGTgag
gi|14 : G---GC----TC-TAGCACTAAGTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-A-TAA-TACA-CTTATAATGTA--A--TATTAT-----TTGATAGGATATG
gi|15 : ttCATTTTGCGTGTAAT-CTGTCAAAATA-TAGTCAGGA--TTGATGGCATTGTCtgat
gi|16 : ATTGTAAT-TTGGTAAATTGTGTAAAGCATTCTA-T--------------------------AGATTGATT-ATTCTGAAAagagc
gi|17 : AGCATTCTA-T--------------------------AGA-TGATT-ATTCTG-AAAGCAATAGATAGGCCT
gi|2 : CACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAG---AA--AC-AAACTATGA----GT---AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------A-CTAAACATGC---GATGAATTTC---AGT-AT----A-AAACTGCG-------C------GG--CG-AT-TGTATG----AGAGA--CAGAGGCCA--G-CAT--G--TCGATGTTT-T-AA--AA-T---AC-T---CAA---AAA---A--ATGG---ACTT-----CGCCTCATCA---AAGTGTGCCAGTGG--TGTTTTTA-AT-GC-ACATT---ATGGACACTC--AGCATAATAATA-TGTTAAT-AATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGAC-GCATGATCCACGAGC-----CGAAAGCGAGACA-GTGGACTATGCGTCAAAA----CCCTG---ACT--AC---AA----ATTCGGC-A-TAG-TACA-CGCAAAATGTA--A--CATTATTA-TATT
gi|3 : TTATGCTTCCT-GTTAGCTTTTCC-CTCTATAT-ATCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCT-A-TGCAATTTATGTAGTGATT------GTCC---------ACT--------A-TAGT---ACTATG-GC-----A-------------AAA-TACGTG--AAGAAATTAAAATTTGT--------GTTAACGCCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATTGG--T--GGCCCAGAGCGCGTTACTG----ACTGAGCTACATAGGCCCATGAGCATTGAGTCG-TTACCGGTAATATTTATTATAAA--GTTAACTTTGGCCTCCAG-TTCTA-AATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGGTATATTGT--AAAGCATTCTA-TTAAAGCATTCTATTAAAGCATTCTATAGA-CGATT-ACTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTG-AAT-AGAACAC--CC-AAAAT
gi|4 : taCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTG-AATCAGAA-----AC-AAAATATGAGT-TG------CCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT-----------TGAAT---C---GATGAATTTC---AGTA-T----A-AAACTGCG-------C------GG--CG-AT-TTTATGA----GAAA--CAG--GCAA--G-CCT--G--TCGATGTTT-TTAA--AA-T---AC-T---C-A---AAA---A--T-GG---ACTTA----CACCTCATCA---AAGTG-----GTGG--TG--TTTTTAT-GC-ACATT---ATGGACACTC--AGCATAATAAT----------AATAATAATGTTACATTTTGCGTGTACTA-TGCCAAAATAGTAGTCAGGGTTTTGAC-GCATCGTCCAC--TCGCCTTCG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CACAAAATGTA--A--CATTATTA-TAATAAT
gi|5 : AAAGT-CTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGTT-GT-ACGTCATTACTGTTG--ATTCGT-CT--AATC----CAGCTGT-AAAACATAAACATGT---AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC--A-AAAA--TAAACATGC---GATGAATTTC---AGT-AT------AAACTGCG-------C----------C--AT-TTTA--GA--TGAGG--AAGAGGCAAGGG-ACT-------GATGGTT-T-AAATAG-TG--ACAT---C-ATGTGAACATA--TCGA---GCTC-----CTCTCCATCA--------TG---GTTG---G--TTT--AT-GA-TCATTAAAATGGACACTC--AG
gi|6 : tatagactattacccttccattacatgttaaagcgTGCTACCT-GTTAGCTTCTCTTCTGTATAT-ATTATATAT-TTTCACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GCAAAAAA----CTATGCC-GAAA-TACGTG--AGAAT--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTGTCG--GGTCCGGA--AAGTTACCG----ACTGA-CTACGCAGG-CCATGAGCA-TGA-TCGCT------TAA-TTTTA-TATAAAAGATTAACATTGGCCTCCAA-TTTTCAAATACCCCTTTTTAAGAA-TTAAAAT
gi|7 : TATGCTTCCT-GTTAGCTTCTCT-CTGTATA--ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-AATAGT---ACTATA-GC-----A----CTATGCC-GAAA-TACGTG--AAGAAT-TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTTGT--C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAATTTCA--AATACCCCTTTTTAAGAATTTAAAAT
gi|8 : TTTTTAAGAGTTTGAAATCA--TTTTTTTTGTAAT-----TAAA-------AAGCAGACTG-T--------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTGTAA-------AA--AC-AAAAGATGA----GT---AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAA-CAAAACATGC---AATGAATTTC---AGT-AT----A-AAACT
gi|9 : CCAACATCTAA--TGTTCAA-AAAACCTACACAAGCATAGA-AAATTCCCTTAGTAATCAAGA-AAACTCCG-------CATCGCTGGAACGAAT-TTTATGAAGTAGAAATTTAGTAGCAA--A-CC---G--TAAA--------AA--AA-TAAAAC-TAACC-A---AAA---ACCTAGGAATACTTTAGTCCGTATAGTCAAGGAAGTGTG---GTGGTTTG--TTCA-GTGGCAAAAAT---ATGGACCTTCCGAGCATAATAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA
Alignments
lowQualScore : 1 11 222222 333333333 1111 333333333333333333 11 11 22222222 22222 2222 2222 333333333 11 1 22 1 11 66666666666666666666666666 22 3333333 4444444444444 3333333333 22222222222 111 111 1111111 444444444444444444444 1111 22222222 2222222222222222222222222 222 111 22222 111 111 111111 11 111 11 6666666666 22 1 444444444444444 1111 1111 111 11 111111111 11111
lowQualScore : 8 0 8 1 88 8 8 8 8 8 8 88 333333 222222222 0 8 8 4444 8 000000000000000000 8 11 1 99 0 1 99999999 0 1 8 99 0 22222 3333 1111 2 2 3 2 333333333 3 3 33 2 0 33 1 3 0 0 11 6 99999999999999999999999999 6 22 3 2222222 0 99 2 77 5 0 5 66 3333333333333 6666666666 6 6 22 88 3 77 88888888888 000 000 3333333 5 000000000000000000000 6 6666 1 99 3 00000000 99 888 5555555555555555555555555 333 111 33333 1 111 0 444 222222 11 8 8 444 11 4444444444 2 66 2 2 3 0 1 3 777777777777777 7777 8 6 7777 444 11 888888888 8 8 8 8 1 33333 0 8 1 1
lowQualScore : . . . . .. . . . . . . .. ...... ......... . . . .... . .................. . .. . .. . . ........ . . . .. . ..... .... .... . . . . ......... . . .. . . .. . . . . .. . .......................... . .. . ....... . .. . .. . . . .. ............. .......... . . .. .. . .. ........... ... ... ....... . ..................... . .... . .. . ........ .. ... ......................... ... ... ..... . ... . ... ...... .. . . ... .. .......... . .. . . . . . . ............... .... . . .... ... .. ......... . . . . . ..... . . . .
lowQualScore : 0 6 0 0 66 0 0 0 0 0 0 88 000000 000000000 8 0 0 8888 0 666666666666666666 0 00 4 00 8 4 00000000 8 4 0 44 6 00000 8888 2222 5 5 2 5 000000000 2 2 88 5 0 88 0 2 0 8 00 7 22222222222222222222222222 7 88 2 5555555 8 22 5 99 7 1 7 44 7777777777777 3333333333 7 7 00 22 5 99 33333333333 000 000 1111111 7 888888888888888888888 7 5555 7 22 5 88888888 22 333 0000000000000000000000000 333 777 33333 0 777 8 000 888888 88 0 0 000 00 0000000000 5 22 5 0 2 0 0 2 000000000000000 0000 0 4 0000 000 00 222222222 0 0 0 0 0 00000 8 0 0 0
consensus : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
Reference ( family-6180 ) : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|1 : TTATGGCTCCT--TTAGCT-CTCT-CTATATA--ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCT-AATG----TTATGTAGCAACC------GTGC---------ACTATGCCGA-A-TAG----ACTATATGC-----A----CTA--CCAGAAAATACGTG--AAAGA--TAAAATTTGT--------GT-AAC-CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--TGTCCGGA-----CTACCGTTCGACTGAGCTACACAGGCCAATGAGCATTGAGTCG-T-------AATTTTTATTATAAA--GTGAACATTG-CCTCCAG-TTCT--AATACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTGTGAATTGT--GAAGCATTCTACT--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--ATTAAAATATGAGT-TGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GGT-CG-AT-TT-ATGAA--AGGGA--CAGAGG-AAG-C---T--G--TCGATGTTT-T-AAA-----AAT---GCT---C--A----AAAAT---GG---ACTT-----CACCTCATCA---AAGTGTG---GCAG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATGAT----ATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGAC-GCATAG---A-----------G---GC----TC-GTGGAC-ATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTTGGC-A-TGA-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|10 : tatCTTTCTAGTTAGCT-CTCT-CCCTATATCATCAC-TATGTC-CACCATCTTCGCATAGT-AGTCTAA-TG-AATATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAGACA-TAATGCGACAATA-GT-----ACATCCTATGCCAACAG-TA-GTGCCAACAA--CA---TCCGTCGGAGAACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGC-GTCTA--GACGGTCCGGtcatttttgcatttatttttgttcacctgct
gi|11 : tatattgcC--TG-----CG---GC----TCTGTGGACCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TA----TTCTTGCTATTAGTTACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATgcttacca
gi|12 : tatggacatGC---GATGAATTT-------AAT----ATAAACTGCAACTGGTCC------GG--CGGATGTTTATGAG--AG-GA--CAGAGGCAAGGC--CTTTGCTTCGATGTTTAT-AAA-----A-T---ACT---CC-A----AAAAT---GG---ACTT------G-CTCATCA---Aattgtg
gi|13 : TTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCAA------TGTGAT--GT-CTT-TGTC------------------TGAAT-C----------AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGTgag
gi|14 : G---GC----TC-TAGCACTAAGTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-A-TAA-TACA-CTTATAATGTA--A--TATTAT-----TTGATAGGATATG
gi|15 : ttCATTTTGCGTGTAAT-CTGTCAAAATA-TAGTCAGGA--TTGATGGCATTGTCtgat
gi|16 : ATTGTAAT-TTGGTAAATTGTGTAAAGCATTCTA-T--------------------------AGATTGATT-ATTCTGAAAagagc
gi|17 : AGCATTCTA-T--------------------------AGA-TGATT-ATTCTG-AAAGCAATAGATAGGCCT
gi|2 : CACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAG---AA--AC-AAACTATGA----GT---AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------A-CTAAACATGC---GATGAATTTC---AGT-AT----A-AAACTGCG-------C------GG--CG-AT-TGTATG----AGAGA--CAGAGGCCAG-C--AT--G--TCGATGTTT-T-AAA-----A-T---ACT---CAAA----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTGCCAGTGG--TGTTTTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATA-TGTTAAT-AATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGAC-GCATGATCCACGAGC-----CGAAAGCGAGACA-GTGGACTATGCGTCAAAA----CCCTG---ACT--AC---AA----ATTCGGC-A-TAG-TACA-CGCAAAATGTA--A--CATTATTA-TATT
gi|3 : TTATGCTTCCT-GTTAGCTTTTCC-CTCTATAT-ATCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCT-A-TGCAATTTATGTAGTGATT------GTCC---------ACT--------A-TAGT---ACTATG-GC-----A-------------AAA-TACGTG--AAGAAATTAAAATTTGT--------GTTAACGCCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATTGG--T--GGCCCAGAGCGCGTTACTG----ACTGAGCTACATAGGCCCATGAGCATTGAGTCG-TTACCGGTAATATTTATTATAAA--GTTAACTTTGGCCTCCAG-TTCTA-AATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGGTATATTGT--AAAGCATTCTA-TTAAAGCATTCTATTAAAGCATTCTATAGA-CGATT-ACTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTG-AAT-AGAACAC--CC-AAAAT
gi|4 : taCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTG-AATCAGAA-----AC-AAAATATGAGT-TG------CCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT-----------TGAAT---C---GATGAATTTC---AGTA-T----A-AAACTGCG-------C------GG--CG-AT-TTTATGA----GAAA--CAG--GCAAG-C--CT--G--TCGATGTTT-TTAAA-----A-T---ACT---C--A----AAAAT---GG---ACTTA----CACCTCATCA---AAGTG-----GTGG--TG--TTTTTAT-GC-ACATTA---TGGACACTC--AGCATAATAAT----------AATAATAATGTTACATTTTGCGTGTACTA-TGCCAAAATAGTAGTCAGGGTTTTGAC-GCATCGTCCAC--TCGCCTTCG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CACAAAATGTA--A--CATTATTA-TAATAAT
gi|5 : AAAGT-CTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGTT-GT-ACGTCATTACTGTTG--ATTCGT-CT--AATC----CAGCTGT-AAAACATAAACATGT---AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC--A-AAAA--TAAACATGC---GATGAATTTC---AGTA-T----A-AA-CTGCG-------C----------C--AT-TTTA--GA--TGAGG--AAGAGGCAAG-GGACT--G-----ATGGTT-T-AAATAGTGA-C---A-T---C--ATGTGAACATATCGA---GCTC-----CTCTCCATCA--------TG---GTTG---G--TTTA--T-GA-TCATTAAAATGGACACTC--AG
gi|6 : tatagactattacccttccattacatgttaaagcgTGCTACCT-GTTAGCTTCTCTTCTGTATAT-ATTATATAT-TTTCACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GCAAAAAA----CTATGCC-GAAA-TACGTG--AGAAT--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTGTCG--GGTCCGGA--AAGTTACCG----ACTGA-CTACGCAGG-CCATGAGCA-TGA-TCGCT------TAA-TTTTA-TATAAAAGATTAACATTGGCCTCCAA-TTTTCAAATACCCCTTTTTAAGAA-TTAAAAT
gi|7 : TATGCTTCCT-GTTAGCTTCTCT-CTGTATA--ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-AATAGT---ACTATA-GC-----A----CTATGCC-GAAA-TACGTG--AAGAAT-TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTTGT--C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAATTTCA--AATACCCCTTTTTAAGAATTTAAAAT
gi|8 : TTTTTAAGAGTTTGAAATCA--TTTTTTTTGTAAT-----TAAA-------AAGCAGACTG-T--------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTGTAA-------AA--AC-AAAAGATGA----GT---AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAA-CAAAACATGC---AATGAATTTC---AGT-AT----A-AAACT
gi|9 : CCAACATCTAA--TGTTCAA-AAAACCTACACAAGCATAGA-AAATTCCCTTAGTAATCAAGA-AAACTCCG-------CATCGCTGGAACGAAT-TTTATGAAGTAGAAATTTAGTAGCAAA-C--C---G--TAAA--------AAA-----A-TAAAACTAACC--A----AAAACCTAGGAATACTTTAGTCCGTATAGTCAAGGAAGTGTG---GTGGTTTG--TTCA-GTGGCAAAAATA---TGGACCTTCCGAGCATAATAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA
Alignments
lowQualScore : 1 11 222222 333333333 1111 333333333333333333 11 11 22222222 22222 2222 2222 333333333 11 1 22 1 11 66666666666666666666666666 22 3333333 4444444444444 3333333333 22222222222 111 111 1111111 444444444444444444444 1111 22222222 2222222222222222222222222 222 111 22222 111 111 111111 11 111 11 6666666666 22 1 444444444444444 1111 1111 111 11 111111111 11111
lowQualScore : 8 0 8 1 88 8 8 8 8 8 8 88 333333 222222222 0 8 8 4444 8 000000000000000000 8 11 1 99 0 1 99999999 0 1 8 99 0 22222 3333 1111 2 2 3 2 333333333 3 3 33 2 0 33 1 3 0 0 11 6 99999999999999999999999999 6 22 3 2222222 0 99 2 77 5 0 5 66 3333333333333 6666666666 6 6 22 88 3 77 88888888888 000 000 3333333 5 000000000000000000000 6 6666 1 99 3 00000000 99 888 5555555555555555555555555 333 111 33333 1 111 0 444 222222 11 8 8 444 11 4444444444 2 66 2 2 3 0 1 3 777777777777777 7777 8 6 7777 444 11 888888888 8 8 8 8 1 33333 0 8 1 1
lowQualScore : . . . . .. . . . . . . .. ...... ......... . . . .... . .................. . .. . .. . . ........ . . . .. . ..... .... .... . . . . ......... . . .. . . .. . . . . .. . .......................... . .. . ....... . .. . .. . . . .. ............. .......... . . .. .. . .. ........... ... ... ....... . ..................... . .... . .. . ........ .. ... ......................... ... ... ..... . ... . ... ...... .. . . ... .. .......... . .. . . . . . . ............... .... . . .... ... .. ......... . . . . . ..... . . . .
lowQualScore : 0 6 0 0 66 0 0 0 0 0 0 88 000000 000000000 8 0 0 8888 0 666666666666666666 0 00 4 00 8 4 00000000 8 4 0 44 6 00000 8888 2222 5 5 2 5 000000000 2 2 88 5 0 88 0 2 0 8 00 7 22222222222222222222222222 7 88 2 5555555 8 22 5 99 7 1 7 44 7777777777777 3333333333 7 7 00 22 5 99 33333333333 000 000 1111111 7 888888888888888888888 7 5555 7 22 5 88888888 22 333 0000000000000000000000000 333 777 33333 0 777 8 000 888888 88 0 0 000 00 0000000000 5 22 5 0 2 0 0 2 000000000000000 0000 0 4 0000 000 00 222222222 0 0 0 0 0 00000 8 0 0 0
consensus : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
Reference ( family-6180 ) : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|1 : TTATGGCTCCT--TTAGCT-CTCT-CTATATA--ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCT-AATG----TTATGTAGCAACC------GTGC---------ACTATGCCGA-A-TAG----ACTATATGC-----A----CTA--CCAGAAAATACGTG--AAAGA--TAAAATTTGT--------GT-AAC-CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--TGTCCGGA-----CTACCGTTCGACTGAGCTACACAGGCCAATGAGCATTGAGTCG-T-------AATTTTTATTATAAA--GTGAACATTG-CCTCCAG-TTCT--AATACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTGTGAATTGT--GAAGCATTCTACT--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--ATTAAAATATGAGT-TGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GGT-CG-AT-TT-ATGAA--AGGGA--CAGAGG-AAG-C---T--G--TCGATGTTT-T-AAA-----AAT---GCT---C--A----AAAAT---GG---ACTT-----CACCTCATCA---AAGTGTG---GCAG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATGAT----ATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGAC-GCATAG---A-----------G---GC----TC-GTGGAC-ATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTTGGC-A-TGA-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|10 : tatCTTTCTAGTTAGCT-CTCT-CCCTATATCATCAC-TATGTC-CACCATCTTCGCATAGT-AGTCTAA-TG-AATATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAGACA-TAATGCGACAATA-GT-----ACATCCTATGCCAACAG-TA-GTGCCAACAA--CA---TCCGTCGGAGAACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGC-GTCTA--GACGGTCCGGtcatttttgcatttatttttgttcacctgct
gi|11 : tatattgcC--TG-----CG---GC----TCTGTGGACCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TA----TTCTTGCTATTAGTTACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATgcttacca
gi|12 : tatggacatGC---GATGAATTT-------AAT----ATAAACTGCAACTGGTCC------GG--CGGATGTTTATGAG--AG-GA--CAGAGGCAAGGC--CTTTGCTTCGATGTTTAT-AAA-----A-T---ACT---CC-A----AAAAT---GG---ACTT------G-CTCATCA---Aattgtg
gi|13 : TTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCAA------TGTGAT--GT-CTT-TGTC------------------TGAAT-C----------AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGTgag
gi|14 : G---GC----TC-TAGCACTAAGTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-A-TAA-TACA-CTTATAATGTA--A--TATTAT-----TTGATAGGATATG
gi|15 : ttCATTTTGCGTGTAAT-CTGTCAAAATA-TAGTCAGGA--TTGATGGCATTGTCtgat
gi|16 : ATTGTAAT-TTGGTAAATTGTGTAAAGCATTCTA-T--------------------------AGATTGATT-ATTCTGAAAagagc
gi|17 : AGCATTCTA-T--------------------------AGA-TGATT-ATTCTG-AAAGCAATAGATAGGCCT
gi|2 : CACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAG---AA--AC-AAACTATGA----GT---AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------A-CTAAACATGC---GATGAATTTC---AGT-AT----A-AAACTGCG-------C------GG--CG-AT-TGTATG----AGAGA--CAGAGGCCAG-C--AT--G--TCGATGTTT-T-AAA-----A-T---ACT---CAAA----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTGCCAGTGG--TGTTTTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATA-TGTTAAT-AATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGAC-GCATGATCCACGAGC-----CGAAAGCGAGACA-GTGGACTATGCGTCAAAA----CCCTG---ACT--AC---AA----ATTCGGC-A-TAG-TACA-CGCAAAATGTA--A--CATTATTA-TATT
gi|3 : TTATGCTTCCT-GTTAGCTTTTCC-CTCTATAT-ATCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCT-A-TGCAATTTATGTAGTGATT------GTCC---------ACT--------A-TAGT---ACTATG-GC-----A-------------AAA-TACGTG--AAGAAATTAAAATTTGT--------GTTAACGCCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATTGG--T--GGCCCAGAGCGCGTTACTG----ACTGAGCTACATAGGCCCATGAGCATTGAGTCG-TTACCGGTAATATTTATTATAAA--GTTAACTTTGGCCTCCAG-TTCTA-AATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGGTATATTGT--AAAGCATTCTA-TTAAAGCATTCTATTAAAGCATTCTATAGA-CGATT-ACTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTG-AAT-AGAACAC--CC-AAAAT
gi|4 : taCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTG-AATCAGAA-----AC-AAAATATGAGT-TG------CCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT-----------TGAAT---C---GATGAATTTC---AGTA-T----A-AAACTGCG-------C------GG--CG-AT-TTTATGA----GAAA--CAG--GCAAG-C--CT--G--TCGATGTTT-TTAAA-----A-T---ACT---C--A----AAAAT---GG---ACTTA----CACCTCATCA---AAGTG-----GTGG--TG--TTTTTAT-GC-ACATTA---TGGACACTC--AGCATAATAAT----------AATAATAATGTTACATTTTGCGTGTACTA-TGCCAAAATAGTAGTCAGGGTTTTGAC-GCATCGTCCAC--TCGCCTTCG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CACAAAATGTA--A--CATTATTA-TAATAAT
gi|5 : AAAGT-CTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGTT-GT-ACGTCATTACTGTTG--ATTCGT-CT--AATC----CAGCTGT-AAAACATAAACATGT---AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC--A-AAAA--TAAACATGC---GATGAATTTC---AGTA-T----A-AA-CTGCG-------C----------C--AT-TTTA--GA--TGAGG--AAGAGGCAAG-GGACT--G-----ATGGTT-T-AAATAGTGA-C---A-T---C--ATGTGAACATATCGA---GCTC-----CTCTCCATCA--------TG---GTTG---G--TTTA--T-GA-TCATTAAAATGGACACTC--AG
gi|6 : tatagactattacccttccattacatgttaaagcgTGCTACCT-GTTAGCTTCTCTTCTGTATAT-ATTATATAT-TTTCACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GCAAAAAA----CTATGCC-GAAA-TACGTG--AGAAT--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTGTCG--GGTCCGGA--AAGTTACCG----ACTGA-CTACGCAGG-CCATGAGCA-TGA-TCGCT------TAA-TTTTA-TATAAAAGATTAACATTGGCCTCCAA-TTTTCAAATACCCCTTTTTAAGAA-TTAAAAT
gi|7 : TATGCTTCCT-GTTAGCTTCTCT-CTGTATA--ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-AATAGT---ACTATA-GC-----A----CTATGCC-GAAA-TACGTG--AAGAAT-TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTTGT--C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAATTTCA--AATACCCCTTTTTAAGAATTTAAAAT
gi|8 : TTTTTAAGAGTTTGAAATCA--TTTTTTTTGTAAT-----TAAA-------AAGCAGACTG-T--------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTGTAA-------AA--AC-AAAAGATGA----GT---AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAA-CAAAACATGC---AATGAATTTC---AGT-AT----A-AAACT
gi|9 : CCAACATCTAA--TGTTCAA-AAAACCTACACAAGCATAGA-AAATTCCCTTAGTAATCAAGA-AAACTCCG-------CATCGCTGGAACGAAT-TTTATGAAGTAGAAATTTAGTAGCAAA-C--C---G--TAAA--------AAA-----A-TAAAACTAACC--A----AAAACCTAGGAATACTTTAGTCCGTATAGTCAAGGAAGTGTG---GTGGTTTG--TTCA-GTGGCAAAAATA---TGGACCTTCCGAGCATAATAAT
blockSeqs : A T T C TC A G T . A . CA TGCTTT TACAACGAG C A TGCG . ACATCCTATGCCA . CC C AT A CGGAGAAC T . TT GAC GCGC . G C T G TTACCGGT T T AG G T CA A A G GT . TAAAGCATTCTATTAAAGCATTCTAT T A A TAATGTT TC C CG C T GT AGAACACCC ACATGTA T A CG GG T AC CCAAGAAAAC ATA CTT AATCAAG T CATCGCTGGAACGA G AAGT A TT A GCCTTT CT AT TAGTGACATCATGTG ATC AAT TAGTC C AGG CCA TGTT TA G A AAA CG ATGTTAAT G C G A T G T T CGAGCCGAAA GAGA T C ACGT GTT GG CGGTACTTT T T T T T TGAAT T T A
blockSeqs : . T . C T . . . . . . A . . . . T . AAAAAACTATGCC . . G T G . A . A TCG AA . G C T G CTT T T . G . A G A G . . . . A A . . C . . . T CCAGCTGT GTTG . . CG AC T . TCAAAAAACC . . AAT . ACTGGTCCGGCGG . AG A . A GGACT . TT ATAAAACTAACCA CTA . A C . . TTTG A . . . . . G G G A T . G T CTCGCCTTCG . . T . . . TA . . . . T A . G G
blockSeqs : . T . G T . . . . . . A . . . . T . ACTATGCC . . A . G . G . A T AA . . . . . TT . . . G . . C . . . . . . A A . . G . . . G CAGAAAC ATC . . CA AC T . CAAAAA . . AT . CGGCG . GA A . A CAT . T ATACTCAAA . . . C . . TG G . . . . G A . A . . C T CTGCG . . T . . . AA . . . . G A .
blockSeqs : . . . G . . . . . . . A . . . . T . A . . G . . . G . T C C . . . . . A C . C . . . G CAGAAAC GTA . . CT . A . AC . . AT . CGGCG . A A . T CCT . T ATACTCCA . . . T . . G . . . . . . . C . . . TA . . . . A A .
blockSeqs : . . . A . . . . . . G AAAC GTA . . . . . . . . . AT . CC . . . . . CC . . ATACTCA . . . . .
blockSeqs : . . . . C . . . AT .
blockSeqCons : T* A* T*** ACTATGCC********** C**** A* CAGAAAC****** GTA******* AT***** CGGCG**************** CCT***** T** ATACTCA****************** TG****
originalCons : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCAGAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG--G--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAACAA--AC-AAAATATGAGT-TGT---AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAAT----A-AAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
finalCons : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TGA-ATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GCACTATGCC----------GAAA-TACGTG--AAGAA--TAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTGC----GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTG-AATCAGAAAC------AAAATATGAGTA-------GCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGTAT-----A-AAACTGCGCGGCG----------------AT-TTTATGAA--AGAGA--CAGAGGCAAGCCT-----G--TCGATGTTTT--AAAATACTCA------------------AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGGTG----TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA
Alignments
lowQualScore : 1 11 222222 333333333 1111 2222222222 111 11 1111 22222222 222222 2222 2222 333333333 11 1 22 1 11 66666666666666666666666666 3333333 22222222222222222 2222222 22222222222 111 111 1111 444444444444444444444 1111 22222222 2222222222222222222222222 222 111 22222 111 111 111111 11 111 11 6666666666 22 1 444444444444444 1111 1111 111 11 111111111 11111
lowQualScore : 8 0 8 1 88 8 8 8 8 8 8 88 333333 222222222 0 8 8 4444 8 8888888888 5 222 8 11 1 3333 0 1 99999999 0 1 8 99 111111 3333 1111 2 2 3 2 333333333 3 3 33 2 0 33 1 3 0 0 11 6 99999999999999999999999999 6 6 3 2222222 0 99 2 77 5 0 1 5 22222222222222222 3 1111111 6 6 22 88 3 77 88888888888 000 000 5 5 2222 5 000000000000000000000 6 6666 1 99 3 00000000 99 888 5555555555555555555555555 333 111 33333 1 111 0 444 222222 11 8 8 444 11 4444444444 2 66 2 2 3 0 1 3 777777777777777 7777 8 6 7777 444 11 888888888 8 8 8 8 1 33333 0 8 1 1
lowQualScore : . . . . .. . . . . . . .. ...... ......... . . . .... . .......... . ... . .. . .... . . ........ . . . .. ...... .... .... . . . . ......... . . .. . . .. . . . . .. . .......................... . . . ....... . .. . .. . . . . ................. . ....... . . .. .. . .. ........... ... ... . . .... . ..................... . .... . .. . ........ .. ... ......................... ... ... ..... . ... . ... ...... .. . . ... .. .......... . .. . . . . . . ............... .... . . .... ... .. ......... . . . . . ..... . . . .
lowQualScore : 0 6 0 0 66 0 0 0 0 0 0 88 000000 000000000 8 0 0 8888 0 0000000000 6 444 0 00 4 0000 8 4 00000000 8 4 0 44 222222 8888 2222 5 5 2 5 000000000 2 2 88 5 0 88 0 2 0 8 00 7 22222222222222222222222222 7 7 2 5555555 8 22 5 99 7 1 4 7 99999999999999999 2 0000000 7 7 00 22 5 99 33333333333 000 000 7 7 1111 0 888888888888888888888 7 5555 7 22 5 88888888 22 333 0000000000000000000000000 333 777 33333 0 777 8 000 888888 88 0 0 000 00 0000000000 5 22 5 0 2 0 0 2 000000000000000 0000 0 4 0000 000 00 222222222 0 0 0 0 0 00000 8 0 0 0
consensus : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCG--A-AATACGTG--AAGAA--T-AAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTNG-C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAG-----AA---A--C-A-AAATATGAGT------AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGT-A-T----AAAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
Reference ( family-6180 ) : NNNTTATGCTTCCT-GTTAGCTTCTCT-CTNTATAT-ATCAC-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTTATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GC-----A----CTATGCCG--A-AATACGTG--AAGAA--T-AAAGTTTGT--------GTTCACGCCGAC-GCGGGGAGTCGA-ACTCACGACGTCGCGGTTTG-C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAG-TTCT--AATACCCNTTTTTAAGAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAG-----AA---A--C-A-AAATATGAGT------AGCCTAAT-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAA-AAAA-CTAAACATGC---GATGAATTTC---AGT-A-T----AAAACTGCG-------C------GG--CG-AT-TTTATGAA--AGAGA--CAGAGGCAAG-C--CT--G--TCGATGTTT-T-AAA-----A-T---ACT---C--A----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTG---GTGG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATG-T----AT-AATAATAATGTTACATTTTGCGTGTACTANTGCCAAAATAGTAGTCGGGGTTTTGAC-GCATNGTCCAC--TC-----CG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAANATATNAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|1 : TTATGGCTCCT--TTAGCT-CTCT-CTATATA--ATCAC-TAT-TT-CACCATTTCTGCATAGTTGTTCT-AATG----TTATGTAGCAACC------GTGC---------ACTATGCCGA-A-TAG----ACTATATGC-----A----CTA--CCAGAA-AATACGTG--AAAGA--T-AAAATTTGT--------GT-AAC-CCAACAGCAGGGAGTCGA-ACTCACGACGTCGCGGTTTG-G--TGTCCGGA-----CTACCGTTCGACTGAGCTACACAGGCCAATGAGCATTGAGTCG-T-------AATTTTTATTATAAA--GTGAACATTG-CCTCCAG-TTCT--AATACCCATTTTTAAGAATTTAAAATCAACTTTTTAATGTAATGCTTGTGAATTGT--GAAGCATTCTACT--------------------------AGA-TGATTAACTCTGAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAAGTCTCAATATTGATTAGT--AAGCAACCAACGTCATTG--GAAAC---TGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAG-----AACAAA--TTA-AAATATGAGTTGTCTAGGCCTAAT-CGTTTC-GGGACTGATGAACCAGCTTTATTTAGGGACCAACATCTAA--TGTCCAAGAAAA-CTAAACATGC---GATGAATTTC---AGT-AAT----AAAACTGCG-------C------GGT-CG-AT-TT-ATGAA--AGGGA--CAGAGG-AAG-C---T--G--TCGATGTTT-T-AAA-----AAT---GCT---C--A----AAAAT---GG---ACTT-----CACCTCATCA---AAGTGTG---GCAG--TG--TTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATGAT----ATTAATAATAATGTTACATTTTGT-TGTACTAATGCCAAAATAGTAGTTGGGGTTTTGAC-GCATAG---A-----------G---GC----TC-GTGGAC-ATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTTGGC-A-TGA-TACA-CTCAAAATGTA--A--CATTATTA-TATTAATAACAAATCAATTCTAATACTTTTAGTGAATCCATTTCATCATTTTGTGCTTAAAAA
gi|10 : tatCTTTCTAGTTAGCT-CTCT-CCCTATATCATCAC-TATGTC-CACCATCTTCGCATAGT-AGTCTAA-TG-AATATATGTAGCGACCTGCTTTATGCTACAACGAGACTATGCAGACA-TAATGCGACAATA-GT-----ACATCCTATGCCA--ACAGTA-GTGCCAACAA--C-A---TCCGTCGGAGAACATTCCCGCCTAC-GCGGGGCGTCGA-ACTCACGACGCGGCGTCTAGAC--GGTCCGGtcatttttgcatttatttttgttcacctgct
gi|11 : tatattgcC--TG-----CG---GC----TCTGTGGACCATGCGTCAAAAACGTCCCTGGTTACTGGAC---TA----TTCTTGCTATTAGTTACATCTCAATATGTATGAATCATTATTATTATTAATAATATATAAATgcttacca
gi|12 : tatggacatGC---GATGAATTT----AAT-A-T----AAA-CTGCAACTGGTCC------GG--CGGATGTTTATGAG--AG-GA--CAGAGGCAAGGC--CTTTGCTTCGATGTTTAT-AAA-----A-T---ACT---CC-A----AAAAT---GG---ACTT------G-CTCATCA---Aattgtg
gi|13 : TTAGT--CAGCAGCCAACATCATTA--GAAGCGTTTGTGAAGTCAATG-TGATGTC-TTTGT-CTGAATC----------------------------------------AAT-CGTTTC-GGGACTGACGAGGTAGCTTTATTTATGGACCAACATCTAA--TGTgag
gi|14 : G---GC----TC-TAGCACTAAGTGCCAAAT----TCCTG---ATT--ACCGGTACTTTTTTCGGC-A-TAA-TACA-CTTATAATGTA--A--TATTAT-----TTGATAGGATATG
gi|15 : ttCATTTTGCGTGTAAT-CTGTCAAAATA-TAGTCAGGA--TTGATGGCATTGTCtgat
gi|16 : ATTGTAAT-TTGGTAAATTGTGTAAAGCATTCTA-T--------------------------AGATTGATTA-TTCTGAAAagagc
gi|17 : AGCATTCTA-T--------------------------AGA-TGATTA-TTCTG-AAAGCAATAGATAGGCCT
gi|2 : CACTTTTAAAAATTTAAAATCAACTTTTTATTGTAATGCTGGTAAATTGT--AAAGCATTCTA-T--------------------------AGA-TGATTA-CTCTGAAAAACAATAGATAGGGCTATATC-------GCCGTAAAAGTTCTCAATATTGATTTGT--AAGCAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGT-CTGAATCAG-----AA---A--C-A-AACTATGAGT------AGCCTATC-CGTTTC-GGGACTGACGAACCAGCTTTATTTAGGGACCAACATC----------------A-CTAAACATGC---GATGAATTTC---AGT-A-T----AAAACTGCG-------C------GG--CG-AT-TGTATG----AGAGA--CAGAGGCCAG-C--AT--G--TCGATGTTT-T-AAA-----A-T---ACT---CAAA----AAAAT---GG---ACTT-----CGCCTCATCA---AAGTGTGCCAGTGG--TGTTTTTA-AT-GC-ACATTA---TGGACACTC--AGCATAATAATA-TGTTAAT-AATAATAATGTTACATTTTGCGTGCACT-GTGCCAAAATAGTAGTCAGGGTTCTGAC-GCATGATCCACGAGC-----CGAAAGCGAGACA-GTGGACTATGCGTCAAAA----CCCTG---ACT--AC---AA----ATTCGGC-A-TAG-TACA-CGCAAAATGTA--A--CATTATTA-TATT
gi|3 : TTATGCTTCCT-GTTAGCTTTTCC-CTCTATAT-ATCAC-TAT-TG-CACCATTTTCGCATAGT-GTTCT-A-TGCAATTTATGTAGTGATT------GTCC---------ACT--------A-TAGT---ACTATG-GC-----A--------------A-AATACGTG--AAGAAATT-AAAATTTGT--------GTTAACGCCAAC-GTAGGGAGTCGA-ACTCGCGACGTTGCGATTGG-T--GGCCCAGAGCGCGTTACTG----ACTGAGCTACATAGGCCCATGAGCATTGAGTCG-TTACCGGTAATATTTATTATAAA--GTTAACTTTGGCCTCCAG-TTCTA-AATACCAGTTTTTAAGAATTTAGAATCAACTTTTTATTGTAATGCTGGTATATTGT--AAAGCATTCTA-TTAAAGCATTCTATTAAAGCATTCTATAGA-CGATTA-CTCTAAAAAGCAATAGATAGGCCTATATC-------GCCGTAAAAGTTCTCAATATTGATTAGT--AAGGAACCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCCTTCAT-CTGAAT-AG-----AAC--ACCC-A-AAAT
gi|4 : taCAACGTCATTG--GAAACGTTTGTGACGTCAATG-TGATGTCATTCGTTCTGAATCAG-----AA---A--C-A-AAATATGAGT------TGCCTAATTCGTTTCAGGGACTGA------AGCTTTATTTAGGGATCAACATCTAA--TGT-----------TGAAT---C---GATGAATTTC---AGT-A-T----AAAACTGCG-------C------GG--CG-AT-TTTATGA----GAAA--CAG--GCAAG-C--CT--G--TCGATGTTT-TTAAA-----A-T---ACT---C--A----AAAAT---GG---ACTTA----CACCTCATCA---AAGTG-----GTGG--TG--TTTTTAT-GC-ACATTA---TGGACACTC--AGCATAATAAT----------AATAATAATGTTACATTTTGCGTGTACTA-TGCCAAAATAGTAGTCAGGGTTTTGAC-GCATCGTCCAC--TCGCCTTCG---GC----TC-GTGGACCATGCGTCAAAA----CCCTG---ACT--AC---TA----TTTCGGC-A-TAG-TACA-CACAAAATGTA--A--CATTATTA-TAATAAT
gi|5 : AAAGT-CTCAGTATTGATTAGTTCAAG-AACCAAC-TCATTGCGAAAACGTT-GT-ACGTCATTACTGTTG--ATTCGT-CTAATCCAGCTGTAAA---A--C-ATAAACATG--T------AGCCTAAT-CGATTC-TGGAATTACAA--CA-CTTTATT-AAGGACCGACATCTAAACTGTC--A-AAAA--TAAACATGC---GATGAATTTC---AGT-A-T----AAA-CTGCG-------C----------C--AT-TTTA--GA--TGAGG--AAGAGGCAAG-GGACT--G-----ATGGTT-T-AAATAGTGA-C---A-T---C--ATGTGAACATATCGA---GCTC-----CTCTCCATCA--------TG---GTTG---G--TTTA--T-GA-TCATTAAAATGGACACTC--AG
gi|6 : tatagactattacccttccattacatgttaaagcgTGCTACCT-GTTAGCTTCTCTTCTGTATAT-ATTATATAT-TTTCACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-A-TAGT---ACTATA-GCAAAAAA----CTATGCCG--A-AATACGTG--AGAAT--T-AAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTATTTTCAACACGTCGCGGTTTG-TCGGGTCCGGA--AAGTTACCG----ACTGA-CTACGCAGG-CCATGAGCA-TGA-TCGCT------TAA-TTTTA-TATAAAAGATTAACATTGGCCTCCAA-TTTTCAAATACCCCTTTTTAAGAA-TTAAAAT
gi|7 : TATGCTTCCT-GTTAGCTTCTCT-CTGTATA--ATTAA-TAT-TT-CACCATTTTCGCATAGT-GTTCT-A-TG-AATTCATGTAGCGACC------GTGC---------ACTATGCCGA-AATAGT---ACTATA-GC-----A----CTATGCCG--A-AATACGTG--AAGAA--TTAAAGTTTGT--------GTTCACGCCGAC-GCGGGGAATCTA-TCTCACGACGTCGCGGTTGT-C--GGTCCGGA--AAGTTACCG----ACTGAGCTACGCAGGCCCATGAGCATTGAGTCG-T------TAATTTTTATTATAAA--GTTAACATTGGCCTCCAATTTCA--AATACCCCTTTTTAAGAATTTAAAAT
gi|8 : TTTTTAAGAGTTTGAAATCA--TTTTTTTTGTAAT-----TAAA-------AAGCAGACTG-T--------------------------AGA-TGATTA-CCCTACACAACGATAGATAGTACTACATTTAATGTTGCCGTGAAAGTTCCCAATATGGAATAGT--GAGCAACCAACGTCATTG--GAAACGTCTGTGACATCAATG-TGATGCCATTCGT-CTG---TAA-----AA---A--C-A-AAAGATGAGT------AGCCTAAT-CGTTTT-GGGACCGACTAACCAGCTTTTTTAAGGGACCAACATCTAA--TGTCCAAGAAAA-CAAAACATGC---AATGAATTTC---AGT-A-T----AAAACT
gi|9 : CCAACATCTAA--TGTTCAA-AAAACCTACACAAGCATAGA-AAATTCCCTTAGTAA-TCAAGAAAACTCCG-------CATCGCTGGAACGAAT-TTTATGAAGTAGAAATTTAGTAGCAAA-C--C---G--TAAA--------AAA-----A-TAAAACTAACC--A----AAAACCTAGGAATACTTTAGTCCGTATAGTCAAGGAAGTGTG---GTGGTTTG--TTCA-GTGGCAAAAATA---TGGACCTTCCGAGCATAATAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAGTTGTTACATTGTATGTGATGCTAAAGTTATAAA
Unaligned ( gi|19 ): AGTTTTGGTATGGATCCAGAAATGGCGCTCTA