lowQualScore : 11111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 4 1 44444444444444444 44444 2 33333333333 3333333333333333333 11 111 11 1 222 2 22222222 2222222222222 22222222222 2222222222 111 1 1 1 1 22222222 1111 22222 11 1 1 1111111 111 111 11 11 222 1111 222222222 222222 111 22222222 11 11 11 11 33333333 1 11 1 1 1 6666 1 22 1 33 999999999999999 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1111 22222222222222 1 1 111 111 3333 3333333333333333333333333 2222222
lowQualScore : 0 5 6 6 6 2 88888888888888888 11111 1 3 22222222222 1111111111111111111 44 8 8 2 444 55 0 111 99 77 4 8 2 22 8 99999999 3333333333333 6 6 33333333333 6 9999999999 6 6 6 111 2 5 66 0 5 55 2 2 7 2 22222222 3 3 1 0 555 77777 4 4444 99999 88 5 6 6 4 4 9 3 4 4 3 8888888 8 8 8 222 0 111 44 8 0 11 222 6 0 2 7777 8 88 3 555555555 3 333333 1 444 8 66666666 66 11 11 3 8 0 0 8 8 2 11 88888888 5 8 4 6666 8 5 11 8 0 9 0 7 7 3 0 7 6 7 5 6 1111 6 6 0 5 33 1 0 33 3 888888888888888 3 0 5 9 6 0 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 666 2222 1 1 8 1 77777777777777 0 3 0 3 777 8 000 3 1111 0000000000000000000000000 5 6666666 77 7 3 1 1 8 999
lowQualScore : . . . . . . ................. ..... . . ........... ................... .. . . . ... .. . ... .. .. . . . .. . ........ ............. . . ........... . .......... . . . ... . . .. . . .. . . . . ........ . . . . ... ..... . .... ..... .. . . . . . . . . . . ....... . . . ... . ... .. . . .. ... . . . .... . .. . ......... . ...... . ... . ........ .. .. .. . . . . . . . .. ........ . . . .... . . .. . . . . . . . . . . . . . .... . . . . .. . . .. . ............... . . . . . . . ............................................................................................. ... .... . . . . .............. . . . . ... . ... . .... ......................... . ....... .. . . . . . ...
lowQualScore : 0 0 0 0 0 5 00000000000000000 00000 0 7 00000000000 8888888888888888888 66 0 0 8 222 44 0 888 22 44 0 0 5 88 0 00000000 2222222222222 7 7 55555555555 7 2222222222 7 7 7 000 0 0 99 0 0 11 3 9 1 8 11111111 1 6 3 5 444 22222 0 5555 00000 66 0 0 0 4 0 1 0 0 0 9 7777777 0 0 0 444 6 888 22 0 8 00 000 0 8 2 4444 0 88 2 444444444 2 000000 4 000 0 88888888 88 88 00 8 0 8 8 0 0 8 00 00000000 2 0 4 2222 0 0 00 0 8 2 2 0 3 3 7 0 0 3 0 0 0000 0 0 7 0 22 0 8 22 2 888888888888888 8 0 0 0 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555 7777 0 5 0 4 88888888888888 5 2 0 2 555 0 000 2 4444 9999999999999999999999999 7 4444444 99 9 3 0 7 0 222
consensus : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTNTA-----ACTGTAATTTAAAGCTATGTNTNGGCATCTA-GTACGAAGAACCCTCGAT-AA-TCATAAAGTACAGTCAACCCATGACAAGATATGTGTTGCAACAATGAGGAAT-TTTGC-TTTATTAGA-AAATTAAAA-NTC-GCAAAAAGCCCCA--TGTTAATATTTG-GCAGGATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTGCT-C--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT-----AAACCC-TTTGCTCCG--AGG---GGACAC-AACCAG--A-AAAAA----CAACTAACTAGCATAAAAA-TACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTTTN-CC-TCAAAATG--TGC---CACAATCTGACAGAAAATGGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCAN-TGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAATA--ACTAN------GGAGAAC-ATATCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGATCTTTCTAGAGATTATAATTGCCTTTTATTGACTACTTGTGCTATGACTGTAGTATAATGTTAAAATTACGGTACGAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCTACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT-AGTNAGTGTGTAAAGAATC-TATATGGTAGCATTGTA-CAAAATACGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CCTTTTAAAAACA---TTACGCTTATACCTNACACTAAG-AAG---------------------CTGCCACT-TTGCGCGTGTCTATCATACCGG-AATGGTT---A--CTAGG--GATATTG-CCCTA---AACA-AAAA-T-GCA-A--ATGAGAA-TTTGCCCCCCCCCCCCCCN-----AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
Reference ( gi|2 ) : CAACTACA-CTGTACCTGAGAAGATACAGAAACATTGTGATAGAATATTGCTGTGTACAGTAACTGTAATTC-AAGCTATATTTTTGCATTTATGTACAAAGAACTTTTGTT-TA-TCATAAAGTACAGTCAACCCATGACAAGGTATGTTTTACAACAATTGGGAAA-TTTGC-TTTATTAGA-AAATCAAAA-ATC-ACACAAACCTCCA--TGATAAT-TTTG-GCAGGATG-A--------TGCAT-AC----A-----CA-CA-AATCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--AGTGAT-C--AA-TAT-ATTCCTCACACATTAAAGCAAGGAATACGCAAATAATGGCCT-----AACCTC-TTTGTTCCG--AGG---GAACAC-AACCAG--A-AAAAA----CAACTTACTACCGT-AGAA-TACTCAAAGCTGCCACTTTGCAATGTCTATCATATC-AAATT-GGTTTACCCTTGTGG---T---TA-AA-ATCAAAC-AT--TTA--TGCATGTTTT-CC-TCAAAATG--TGC---CACGATCTGATAGAAAATAGAGAT-TA-CATGTAC--ATAT--AATAATTCAT------AAGAT---AATA-TA-------TAGTTCAA-TGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GCCAATA--ACTAA------GGAAAAC-ATAACTGATGGTGC-TCT--AT-GTGGTATTTAAAGTATAAAAAAGATTGGTAG-ATGTTCTATGACCTTTATAGAGATTATAATTGCTTTTTATTGACTACTTCTACTATGACTATAG---GATGTTAAAATTACGGTATAAGTTGTGCAGGAAAATCGCATTCTTTTTTATGTTTTTTATTGTAAATAATTCATAATATACTCCACATAGTTA-TGTAAACAAAATATGTCTTCAAAGTGTGT-GGTTAGTGTGTAAAGAATC-TAGATGGTAGCACTGTA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAATGTATCTTTTTAAAAACAC--TTACATGTATATCTCACAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCACT-TTGTGCATCTCTATCATACAGG-AATGGTT---A--CTAGG--GAAATTG-CCCTA---AACA-AAAA-T-GCA-A--ATGAGAA-TTTGCCCCCCCCCCCCCCC-----AGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAAAAG
gi|1 : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTGT------ACTGTAATTTAAAGCTATA-ATTGGCATCTA-GTACAAAGTAC--TCGTCATAGTCATAAAGTACAGTCAGCCCATGACAAG--------------AATGAGGAAT-TTTGC-TTTATTAGA-AAATTAAAA-CTC-GCAAAAAGCCCCG--TGTTAATATTTG-GCAGTATG-ATTAATCTTTGCATAAT----AATAAGCA-AA-AATTAAATAATT---T--ATGTAT---ACACATAAATCAAGTTCTG-TGTAATCCCATA-ATG-TACCCCGGAACATTGCTT--GGTGCT-C--AA-TAT-ATTCTTCCCACGTTAAAGCAAGGAAT--------------CT-----AAACTC-TTTGTTCCA--AGG---GGACAC-AATCAG--G-AAAAAAAC-CAAC-TACTAGCATAAAAA-TACACTAAGCTGCCACATTGCGATGTCCTTCATATC-AAATT-GGTCTACCTTTGTGG---T---TA-GA-ATAAAAC-AT--TTA--TACATGTTTT-CC-TCAAAATG--TGC---CACAATCTGATAGAAAA---AGAT-TATCAGAGACTGATATTAAATAATTCAT------AATATAAAAATATTA-------TAGTTCAC-TGT-AAAGGTATACAAAAGCAGAATGTT-GAAGGTTTAAGTA-T-GTCAATA--ACTGT------GGAGAAC-ATACCTGATGATGC-TCTAGAT-ATGGTATTTAAATTATATAAAAGATTGGTAGAATGTTCTATGACCTTTCTAGAGATTATAATTGCCTATTATTGTCTACTTGTGCTATGACTATAGTATAATGTTAAAATTATGGTACAAATTGTGCAGGAAAATCACATCATTTTTGGTATTTTTTATTGTATAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTC------------TAAGTGTGTAAAGAATC-TATATGGTAGCATTGTA-CAAAATACGAG-GC--TAAA---AAGCAGA-ATTGAGGTACCTTTTTAAAGACAC--T------TATACCTCATACTAAG-------------------------CTGCCAC--TTGTGCATGTCTATCATACAGG-AATGGTT---A--CTAGG--GATGTTG-TCCTA---AACA-AAAA-T-GCA-T--ATGAGAA-TTTGCCCCCCCCCCCCCCCCCCCAAGTGG-TACC------GAT--GGGTCCAACTTTGCCTACTTG-GCT-C-ATGGACTA
gi|14 : ttgctactctgtggcattttctactgcattttagtgACATTGTGATAGGATATTGCTGTTTA----------AA----AAACTATGTTTG-GCATCTA-GTAGAAAGAACCTTTTAT-AA-TCATAAAGTACAGGCAACCCATGACAAGATATGTGTTACAACAATGAGGAAT-TTTGC-TTTATTAGA-AAATTAAAA-CTC-GCAAAAAGCTCCA--TG
gi|13 : CATTTATGTACGAAGAACTCTTGAT-AA-TCCTACAGTACAGTTAAACCATGACAAGATATGTGTTGCAA----TGGGAAATTTTGG-TTTAGTAGA-AAATTAAAA-ATC-TCAAAAAGCTCCATTTATTAATATTTG-GCAGGATG-A--------T
gi|21 : gaAACAATGAAGAAT-TTTGC-TTTATTAGA-AAAATAAA----C-TCAAAAAGGCCCA--TGTTAATATTTG-taatttttgcataaaaataagcaaacattatactagtatataa
gi|4 : gtattagcctaGATA-TTTGCTTTTATTATAGAAATCAAAAGATCAACACAAA--GCCA--GTA-AAT-ATTGAGCATGATG-A--------Taaagcggtgtggt
gi|4 : c--TGATATT-TATG-A---AATGTA--------TGCAT-TA----A-----CA-CATAATCAAG----TAGTT--ATGTTTTGAACAC--AA----------G-GGTC-TTCCAAATATACTACCCTGGAACATGGCTTTGGGTGATTC--AA-GATTATTCTACCCA-ATTGA---------TAGGCAAAT-----------------TC-GT-GCTCCG--ATG---GGACATGAACTAG--A-AAAAAATACCAAC--ACTACCAT-AAAA-TGCACAAAGCT-CCACTTTGCGATGTCTATCATATT-AAATTGGGTCTACCTTTATGG---A---TA-GATGTCAAACTATGGTTA---GCATGTTTA-CT-TC-CATTG--TGTCAACATAGTCTGAAAGAGAATAAAGGG-T--TATGTAT--GAAT--AACAATTCATAAAAAAAAAAT---AACA-CA--------AGTTACA-TATCAAGGG--TACAAATGTAGAA-GTTAGCAGGTT--AGGA-TAATCAATACCATTAAAACTGTAGAGAACTATATCTG-TTATGC-T-T--AT-GTGGT-TCTAAAATAaattttgctaataaataaagaacattgatatttatgaaatgtatgcattaacacataatcaagtagttatgttttgaacacaagggtcttccaaatatactaccctggaacatggctttgggtgattcaagattattctacccaattgataggcaaattcgtgctccgatgggacatgaactagaaaaaaataccaacactaccataaaatgcacaaagctccactttgcgatgtctatcatattaaattgggtctacctttatggatagatgtcaaactatggttagcatgtttacttccattgtgtcaacatagtctgaaagagaataaagggttatgtatgaataacaattcataaaaaaaaaataacacaagttacatatcaagggtacaaatgtagaagttagcaggttaggataatcaataccattaaaactgtagagaactatatctgttatgcttatgtggttctaaaatagtctatt
gi|3 : cgatatttgcttttattatagaaatcaaaagatcaacacaaagccagtaaatattgagcatgatgataattttgctaataaataaagaacat-A--------TGTGT-ACCAAGA-----CAGCA-CATCAAG----C---TCTATGCTTTGAACAC-TAA----------AAGGTAATCC-AAA-ATT-TACTATTGAACATTGCTT--AG--------AACTCT-TTTCC----ACATTTAAGCAAC-AATAGGCAA-TAATTGTTT-----AAACCC-TT-GCTCTT--AGGTGGGAA-AC-AACCAG--A-AAAAA------AC---CTAACAT-AAGA-TAC--AACGCTGCCCCTTTGTGATGTCTATCATATCCAAATT-GTCTTTCTCA-ATGGGTCT---TATAA-ATAAAAA-AA--TGAACTGTATATTGTACCGTCAAAATGATTCCA--CACAATC-GACAGAAAATG----T-TA-CAT-TA---ATGA--AACAAT--AG------GAAAT---ACTC-TA-------TA-TTCAG-TGT-GAACG--TACAAAAGTGAAACGTT-TAAAGTTTGAGGAAT-GTCAGTA--ACTA-------GGATAAC-ATGGCTGATGATATATGT--ATTGTGGTATT-AAAGTATATGAA---TTGGTAG-GTTTCCTATGATCTTAATAGAGATTATAATTGCCTTTT-TTGACTgtctatt
gi|10 : agtagaaataagcagacattattttaatttatgtagactttAT-AC----A-----CA-CA-AACCAAG----T---T--CTTTTTTGAACAC-TAA----------G-GGCCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTGCT-C--AA-TAT-TTTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGTCCT-----AAACCC-TTTGCTCCG--AAA---GGACAC-AACCAG--ACAAAAATAACCAACTAACTAGCATAAAAA-TACATAAAGTTGCCATTTTCCGATGTCTATCATATC-AAATT-GGTCAACTCTTtaattgtgtaagacacaatagtaatatttaatatcaacaaaaaacttattgtaaataatttatgatatacctaaatagtttgtaaacaaaatcatcttaaagttgtaagttagtgtggagagagcaggtaatatggttgcaattgctacacaa
gi|6 : atAT-AC----A-----CA-CA-AACCAAG----G---T--CTGTTTTGAACAG-TAA----------G-GGTCATCCCAAA-ATG-TATCCTGGAACATTACTT--GGTGCT-C--AA-TAT-ATTCTTTCTACATTAAAGCAAGGAATAGGCAGATGATGTCCT-----AAATCC-TTTGCTCCA--AAA---GGACAC-AACCAG--A-AAAAA-----AACTAAGTAGCATAAAAA-TACATAAAGCTTCCACTTTGCAATGTCTATCATATC-AAATC-GGTCTACCCTTG
gi|7 : ttttgcatAT-GC----A-----CA-CA-AACCAAG----T---T--ACGTTTTGAACAC-TAA----------G-AGTCATTCCAAA-ATG-TACCCTTGAACATTGCTT--GGTGCT-CTTAA-GAT-A--CCCCACA-AT-AAAGCAAGGAATAGGCAAATAATGGCCT-------------TTGCTCCGCGAGG---GGACAC-AATCAG--A-AAAAT----AAACTTGTTACCAT-AGAA-TACACAAAGCTGCCACTTTGCGGTGTCTATCATATC-AAATT-GGTTTACACTTG-GG---T---gatagcacaacaatatggtgttagtggcaatttgtcccctaaagtggtaccgaacaacctttctggctcacggac
gi|22 : atgattaaatgtttgcatgaatataagcaaaactaaattaatataatttattcatGGAACATTGCTT--GGTGCT-C--AAATAT-ATTCTTCCCACGTTAAAGCAAGGAATGGGCAAATAATGagtataacaagatggtat
gi|15 : CTT--GGTGCT-C--TA-CAT-ATTCTTCCCATATTAAAGCAAAGAATAGGCAATTAATGTCCT-----AAACCC-TTTGCTCCG--AAA---AGACAT-AACCAG--AAAAAAA----CAACTAACTAGCATAAAAA-TACATAAAGCGGCCATTTtaccctt
gi|9 : TTCTCCCCACGTTACAGCAAATAATAGACAAATAATGACCTTTAAAAATC-C-TTTGCTGCG--AGG---AGACAC-AACCAGTAG-AAAAA----CAACCAACTACCAT-AAAA-TGCACAGAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GCTCTACCTTTATGG---TTTATA-AA-ATCAAAC-AA--TGA--TGCATGTTTA-TC-TGAAAGTG--TGC---CACAATCTGGCAGAAAAGGGGGATATA-CATGTAC--AT-T--AAT
gi|26 : CAAGGAATGGGCAAATAATGGCCT-----AAACTCTTTTGTTTCA--AGG---GTACtaaca
gi|5 : AGGAATG-GCAAATAATGGCCT-----AAACTC-TTTGTTCCA--AGA---GGACAC-ATCCAG--A-GAAAA----AACCTAAGTCGCAT-AAAAATACACTAAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GGTCTGCCCTTATGG---T---TA-GA-ATCAGAC-AT--ATA--TGCATGTTTG-CC-TCAAAATG--TGC---CACAACCTGATAGAAAATAGGGAT-TA-CATGTAC--ATTG--AACAATTCAT------AAGAT---AACA-TATACATTGTAGTTCACTTGT--AAGG--TGCGGAAGTAGAATTTT-GAAGGTTTAAGGA-T-GCTAATA--ATTAT------GGAGAAC-ATATCTGA---TGT-TCT--AG-GTGGTATTGAAAGTATATAAAAGATTGGTAG-ATGCTCTATGATCTTTCTAGAGATTACAATTGCCTTTTATTGACTACTTGTGCTATGACTGTAGT--AATGTTAAAATAACGGTACAGATTGTGCAGGAAAATCGCATTATTTTTGCTGTTTTTTATTATAAAGAATTCATAATATAC
gi|17 : TAGGCAAATGATGGCCT-----G--CTC-TGCATT------------GACAC-AACCAGTAG-AAAAA----CAACTAACTACCAT-AAAA-TACGTAAAGCTGCCATTTTGCAATGTCTATCATATC-AAACT-G
gi|19 : CTTTGCGATGTCTATCATATC-AAATT-GGTAAATCCTTGtt
gi|20 : T------AAGAT---AATA-TA-------TAGTTCAT-TGT-AAAGG--TACAATAGTAGAATGTT-GAAGGTTTA---A-T-GTCAATA--ACT-A------TGAAAAC-ATATCTGATGGTGC-TCT--AT-GTCGTAgataacacaagatcgtatagtggcaatcccccccccctcccaagtgatctgactcatagact
gi|12 : TGTTAAAATTACAGTACGAATTGTGCAGGAAAATCACATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATAATCTACATAGTTATTGTAAACAAAACATATCTTC------------TAAGTATGTAAAGAATC-TATATGGTAGCACTGTA-CAAATTGCGAT-TCAGTAAA---A--CTGATAT-----TATTTTTTCAA
gi|25 : gTTTTTGGTGCTTTTAATTGTAAAGAATTCATAATATACTCCACAT
gi|16 : taTTTTTTATTGTAAAGAATTCATAATATACTCTACATAGATATTGTTAGCAAACTATGTCTTT------TTT-AA--AGTGTATAAAGAATC-CATATGGTAGCATTGTA-CACAATATGAG-
gi|3 : TTATTGTAAATAATTTATGATATAC-CTAAATAGTT--TGTAAACAAAAT-CATCTT-AAAGT-TGTAAGTTAGTGTGGAGAGA
gi|8 : agtagaaataagcagacattattttaatttatgtagactttatgtgtaccaagacagcacatcaagctctatgctttgaacactaaaaggtaatccaaaatttactattgaacattgcttagaactcttttccacatttaagcaacaataggcaataattgtttaaacccttgctcttaggtgggaaacaaccagaaaaaaacctaacataagatacaacgctgcccctttgtgatgtctatcatatccaaattgtctttctcaatgggtcttataaataaaaaaatgaactgtatattgtaccgtcaaaatgattccacacaatcgacagaaaatgttacattaatgaaacaataggaaatactctatattcagtgtgaacgtacaaaagtgaaacgtttaaagtttgaggaatgtcagtaactaggataacatggctgatgatatatgtattgtggtattaaagtatatgaattggtaggtttcctatgatcttaatagagattataattgccttttttgacttaattgtgtaagacacaatagtaatatttaatatcaacaaaaaacCAAATTGTGT-AGTTAGTGTGCA--GAATGATATATGACTGCA-TGTAACAAAATACGAG-GC--------------------------------TAAAAACAGAATTACG-GTGT-CCTGAAAATAAAAAAAAACATAGCTCATACGTTAGC---GTCA---TTGTGC-TGTTTATCATACGGGTAATGGTT---A--CTATATTGATATTG-TCC-A---AACA-AAAA-T-G-A-ATTATGAAAAATTT---------TCCCCAA-----AGTAG-TACCCGATGTGATATGAGTCCTATTTGGCCT-CTTGCGCTTC-ATGGACTAgcaggtaatatggttgcaattgctacacaa
gi|11 : atagtctattaaatacggaATGATTGCATTGTA-ATCAATGCAAGCGT--GAAATAAA--CAGA-ATTAA-ATAACCTGT-AAAAACA----TCCACTTAGATCTCACACTAAGTAAG-------------------------CACTGTTGCACGTCT-TATCA-ACAAG-AATGGTA---ACTCTAGG--AATATTGTCCCTA---AGCA-AAAGCC-TCA-AACATGAGAA-ATT---------CTCTTAT-----AGTGGTTACCT-----GAT--GGGTCCAATTTTGTTTGTCTG-GCT-TAAGGGACTAtgt
gi|18 : TAACATTTTA-CAAAATATGGG-GC--TAAA---A--AATA-ATCAAGGTA--CTTGTAAAAAGA-----ACACTTATATCTGACACTGAG-------------------------CTGCCA-T-TTGTGCATGTCTACCATACAGt
gi|7 : CTGCCACT-TTGCG-GTGTCTATCATATCAA-ATTGGTTTACA--CTTGG--G
gi|19 : atgattaaatgtttgcatgaatataagcaaaactaaattaatataatttattcatatgcacacaaaccaagttacgttttgaacactaagagtcattccaaaatgtacccttgaacattgcttggtgctcttaagataccccacaataaagcaaggaataggcaaataatggcctttgctccgcgaggggacacaatcagaaaaataaacttgttaccatagaatacacaaagCT-TTGCG-ATGTCTATCATATCAA-ATTGGT---------------AAAT---CCTTGGATAACACAAGA-TCGTATA--GTGGCAA-T---CCCCCCCCCCTCCCA-----AGTGA-T-C---------T--GACTCtagtataacaagatggtat
gi|24 : A-AAAA-T-GCA-T--ATAAGAA-CTTGCCTCC-------------------A-TAC-------GAT--GGGTCCAATTTTGCCTAatagact
gi|23 : CCCCCCCCCCCCCCC-----AGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAA
gi|27 : gcttaccc-----AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GGT-C-ATGGACTA
Alignments
lowQualScore : 1 444444 1 2 1111 1111 11 22222222 1111111111 11111111 2222222222 11 22222 1 2222222 111 1111 111 1111 111111 111 2222222 22222222 1 1 222 55555555555555 111111 22222222222 555555555555 9999999999999999999999999 111 11 22222222222222222 1 1111 1111 222222 111 111111
lowQualScore : 5 3 0 1 000000 6 4 7 999 4 0 2 2 1111 7 2 4444 44 3 11 0 2 0 8 99999999 2 5 7777777777 5 5 88888888 77 5 5555555555 5 5 5 66 4 66 55 4 0 55 88888 3 44 44 3 33 3 55555 55 2 3 3 3 1111111 5 5 4 5 99 99 6 1 6 99 888 2 7777 6 6 1 000 4444 0 999999 111 6 1111111 77 88 99 1 6 6 6 44444444 88 6 1 3 6 2 99 6 5 3 0 2 3 0 2 55 888 2 0 0 0 99999999999999 1 1 99 666 0 5 5 5 5 99 888888 6 5 77777777777 000000000000 1 3 1111111111111111111111111 3 111 22 6 6 22222222222222222 7 6 1 2222 1 9999 5 000000 222 55 4 999999 66 2 2 5 5 5
lowQualScore : . . . . ...... . . . ... . . . . .... . . .... .. . .. . . . . ........ . . .......... . . ........ .. . .......... . . . .. . .. .. . . .. ..... . .. .. . .. . ..... .. . . . . ....... . . . . .. .. . . . .. ... . .... . . . ... .... . ...... ... . ....... .. .. .. . . . . ........ .. . . . . . .. . . . . . . . . .. ... . . . . .............. . . .. ... . . . . . .. ...... . . ........... ............ . . ......................... . ... .. . . ................. . . . .... . .... . ...... ... .. . ...... .. . . . . .
lowQualScore : 5 0 7 0 777777 7 0 3 000 0 0 0 0 8888 0 5 2222 66 2 00 8 5 2 0 00000000 0 7 4444444444 7 7 77777777 99 7 0000000000 7 7 7 11 4 11 11 4 8 55 88888 1 66 66 6 66 6 55555 88 8 3 6 6 7777777 7 7 3 7 22 22 7 0 7 22 333 2 2222 7 7 0 222 5555 8 222222 777 7 7777777 77 33 22 7 7 7 7 22222222 55 7 8 2 7 5 22 7 6 2 0 5 2 0 5 22 555 0 8 8 8 22222222222222 0 7 22 888 8 0 0 0 7 22 555555 7 0 88888888888 222222222222 0 2 6666666666666666666666666 2 444 99 7 7 22222222222222222 3 7 3 6666 7 9999 7 444444 666 22 4 444444 99 2 0 7 7 7
consensus : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTC-TTGATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTGGCGGGATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATGTTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CC-TTG----TAAAAA----CA-T-ACACTTATATCTCACACTAAG----------------------AAGCTGCCACT-TTGCGCATGTCTATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-CGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCAAGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
Reference ( family-618 ) : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTNTA-----ACTGTAATTTAAAGCTATGTNTNGGCATCTA-GTACGAAGAACCC-TCGATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTGCAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCCCCA--TGTTAATATTTGGCAGGATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTAGCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGACAGAAAAT-GGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTANGGAGAAC-ATATCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGATCTTTCTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTGTAGTA-TAATGTTAAAATTACGGTACGAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCTACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATACGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CC-TTT----TAAAAA----CA-TTACGCTTATACCTNACACTAAG----------------------AAGCTGCCACT-TTGCGCGTGTCTATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-TGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCNAGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
gi|1 : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTGT------ACTGTAATTTAAAGCTATA-ATTGGCATCTA-GTACAAAGTACTCGTC-ATAGTCATAAAGTACAGTCAGCCCATGACAAG--------------AATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCCCCG--TGTTAATATTTGGCAGTATG-ATTAATCTTTGCATAAT----AATAAGCA-AA-AATTAAATAATT---T--ATGTAT---ACACATAAATCAAGTTCTG-TGTAATCCCATA-ATG-TACCCCGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACGTTAAAGCAAGGAAT--------------CT----AAAC-TCTTTGTTC--CAAGG--GGACAC-AATCAG--G-AAAAAAAC-CAACT-ACTAGCATAAAAATACACTAAGCTGCCACATTGCGATGTCCTTCATATC-AAATT-GGTCTACCTTTGTGG---T---TA-GA-ATAAAAC-AT--TTA--TACATGTT-TTCC-TCAAAATG--TGC---CACAATCTGATAGAAAA----AGAT-TATCAGAGACTGATATTAAATAATTCAT------AATATAAAAATATTA-------TAGTTCA-CTGT-AAAGGTATACAAAAGCAGAATGTT-GAAGGTTTAAGTA-T-GTCAAT--------AACTGTGGAGAAC-ATACCTGATGATGC-TCTAGAT-ATGGTATTTAAATTATATAAAAGATTGGTAGAATGTTCTATGACCTTTCTAGAGATTATAATTGCCTATTATTGTC-TACTTGTGCTATGACTATAGTA-TAATGTTAAAATTATGGTACAAATTGTGCAGGAAAATCACATCATTTTTGGTATTTTTTATTGTATAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTC-------------TAAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATACGAG-GC--TAAA---AAGCAGA-ATTGAGGTA-CCTTTT----TAAAGA----CA------CTTATACCTCATACT-------------------------AAGCTGCCAC--TTGTGCATGTCTATCATACAGG-AATGGT---TA--C---TAGG--GATGTTG-TCCTAAACAAAA--A-TGCA-T--ATGAGAA-TTTGCCCCCCCCCCCCCCCCCCCAAGTGG-TACC------GAT--GGGTCCAACTTTGCCTACTTG-GCT-C-ATGGACTA
gi|10 : ttgctactctgtggcattttctactgcattttagtgT-AC----A-----CA-CA-AACCAAG----T---T--CTTTTTTGAACAC-TAA----------G-GGCCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-TTTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGTCCT----AAAC-CCTTTGCTC--CGAAA--GGACAC-AACCAG--ACAAAAATAACCAACTAACTAGCATAAAAATACATAAAGTTGCCATTTTCCGATGTCTATCATATC-AAATT-GGTCAACTCTT
gi|11 : ataATGATTGC-ATTG-TA-ATCAATGCAAGCGT--GAAATAAA--CAGA-ATTAA-ATA-AC-CTG----TAAAAA----CA-TC-CACTTAGATCTCACACTAAGT---------------------AAG----CACTGTTGCACGTCT-TATCA-ACAAG-AATGGT---AACTC---TAGG--AATATTGTCCCTAAGCAAAA--GCCTCA-AACATGAGAA-ATT--------------CTCTTATAGTGGTTACCT-----GAT--GGGTCCAATTTTGTTTGTCTG-GCT-TAAGGGACTA
gi|12 : TGTTAAAATTACAGTACGAATTGTGCAGGAAAATCACATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATAATCTACATAGTTATTGTAAACAAAACATATCTTC-------------TAAGTATGTAAAGA--ATC-T-ATATGGTAGC-ACTG-TA-CAAATTGCGAT-TCAGTAAA---A--CTGATATTAt
gi|13 : gGACATTTATGTACGAAGAACTC-TTGATAATCCTACAGTACAGTTAAACCATGACAAGATATGTGTTG---CAATGGGAAATTTTGGTTTAGTAGAAAATTAAAAATCTCAAAAAGCTCCATTTATTAATATTTGGCAGGATG-A--------Tttttttcaa
gi|14 : ACATTGTGATAGGATATTGCTGTTTA-----A---------AAAACTATGTTT-GGCATCTA-GTAGAAAGAACCT-TTTATAATCATAAAGTACAGGCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCTCCA--TGtaatttttgcataaaaataagcaaacattatactagtatataa
gi|15 : CTT--GGTG-CTC--TA-CAT-ATTCTTCCCATATTAAAGCAAAGAATAGGCAATTAATGTCCT----AAAC-CCTTTGCTC--CGAAA--AGACAT-AACCAGA-A-AAAAA----CAACTAACTAGCATAAAAATACATAAAGCGGCCATTT
gi|16 : TTTTTTATTGTAAAGAATTCATAATATACTCTACATAGATATTGTTAGCAAACTATGTCTT-----T-TTT--A--AAGTGTATAAAGA--ATC-C-ATATGGTAGC-ATTG-TA-CACAATATGAG-
gi|17 : TAGGCAAATGATGGCCT--------------GCTC--TGCAT--TGACAC-AACCAGTAG-AAAAA----CAACTAACTACCATAAAA-TACGTAAAGCTGCCATTTTGCAATGTCTATCATATC-AAACT-G
gi|18 : TAAC-ATTT-TA-CAAAATATGGG-GC--TAAA---A--AATA-ATCAAGGTA--C-TTG----TAAAAA----GA---ACACTTATATCTGACACT-------------------------GAGCTGCCA-T-TTGTGCATGTCTACCATACtt
gi|19 : CTTTGCGATGTCTATCATATC-AAATT-GGTAAATCCTTGag
gi|19 : CT-TTGCG-ATGTCTATCATATCAA-ATTGGTAAATC--C---T-TG--GATA--------ACACAAGA--T-CGTATA--GTGGCAA-T--------CCCCCCCCCCTCCCAAGTGA-Tgataacacaagatcgtatagtggcaatcccccccccctcccaagtgatctgactcatagact
gi|2 : CAACTACA-CTGTACCTGAGAAGATACAGAAACATTGTGATAGAATATTGCTGTGTACAGTAACTGTAATTCAA-GCTATATTTTTGCATTTATGTACAAAGAACTT-TTGTTTATCATAAAGTACAGTCAACCCATGACAAGGTATGTTTTACAACAATTGGGAAATTTGCTTTATTAGAAAATCAAAAATCACACAAACCTCCA--TGATAAT-TTTGGCAGGATG-A--------TGCAT-AC----A-----CA-CA-AATCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--AGTG-ATC--AA-TAT-ATTCCTCACACATTAAAGCAAGGAATACGCAAATAATGGCCT----AACC-TCTTTGTTC--CGAGG--GAACAC-AACCAG--A-AAAAA----CAACTTACTACCGTAGAA-TACTCAAAGCTGCCACTTTGCAATGTCTATCATATC-AAATT-GGTTTACCCTTGTGG---T---TA-AA-ATCAAAC-AT--TTA--TGCATGTT-TTCC-TCAAAATG--TGC---CACGATCTGATAGAAAAT-AGAGAT-TA-CATGTAC--ATAT--AATAATTCAT------AAGAT---AATA-TA-------TAGTTCA-ATGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GCCAAT--------AACTAAGGAAAAC-ATAACTGATGGTGC-TCT--AT-GTGGTATTTAAAGTATAAAAAAGATTGGTAG-ATGTTCTATGACCTTTATAGAGATTATAATTGCTTTTTATTGAC-TACTTCTACTATGACTATAG----GATGTTAAAATTACGGTATAAGTTGTGCAGGAAAATCGCATTCTTTTTTATGTTTTTTATTGTAAATAATTCATAATATACTCCACATAGTTA-TGTAAACAAAATATGTCTTCAAAGTGTGT--GGTTAGTGTGTAAAGA--ATC-T-AGATGGTAGC-ACTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAATGTATCT-TTT----TAAAAA----CACTTACATGTATATCTCACAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCACT-TTGTGCATCTCTATCATACAGG-AATGGT---TA--C---TAGG--GAAATTG-CCCTAAACAAAA--A-TGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCCAGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAActgactcatagact
gi|20 : T------AAGAT---AATA-TA-------TAGTTCA-TTGT-AAAGG--TACAATAGTAGAATGTT-GAAGGTTTA---A-T-GTCAAT--------AACTAT-GAAAAC-ATATCTGATGGTGC-TCT--AT-GTCGTAaag
gi|21 : AACAATGAAGAATTTTGCTTTATTAGAAAAATAAA---CTCAAAAAGGCCCA--TGTTAATATTTG
gi|22 : gtattagcctaGGAACATTGCTT--GGTG-CTC--AAATAT-ATTCTTCCCACGTTAAAGCAAGGAATGGGCAAATAATG---T------AC-CCTTaaagcggtgtggt
gi|23 : -----CCCCCCCCCCCCCCCAGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAA
gi|24 : gcttacccAAAA--A-TGCA-T--ATAAGAA-CTTG-----CCTCC--------------A-TAC-------GAT--GGGTCCAATTTTGCCTA
gi|25 : TATTTTTGGTGCTTTTAATTGTAAAGAATTCATAATATACTCCACAT
gi|26 : CAAGGAATGGGCAAATAATGGCCT----AAACTCTTTTGTTT--CAAGG--GTAC
gi|27 : AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GGT-C-ATGGACTA
gi|3 : -A--------TGTGT-ACCAAGA-----CAGCA-CATCAAG----C---TCTATGCTTTGAACAC-TAA----------AAGGTAATCC-AAA-ATT-TACTATTGAACATTGCTT--AGAA-CTC------------TTTTCCACATTTAAGCAAC-AATAGGCAA-TAATTGTTT----AAAC-CCTT-GCTC--TTAGGTGGGAAAC-AACCAG--A-AAAAA------AC---CTAACATAAGA---TACAACGCTGCCCCTTTGTGATGTCTATCATATCCAAATT-G-TCTTTCTCAATGGGTCT---TATAA-ATAAAAA-AA--TGAACTGTATATTGTACCGTCAAAATGATTCCA--CACAATC-GACAGAAAAT-G----T-TA-CAT-TA---ATGA--AACAAT--AG------GAAAT---ACTC-TA-------TA-TTCA-GTGT-GAACG--TACAAAAGTGAAACGTT-TAAAGTTTGAGGAAT-GTCAGT--------AACTA-GGATAAC-ATGGCTGATGATATATGT--ATTGTGGTATT-AAAGTATATGAA---TTGGTAG-GTTTCCTATGATCTTAATAGAGATTATAATTGCCTTTT-TTGACTTAATTGTG-TAAGAC-ACAATAGTAATATTTAA
gi|3 : agtagaaataagcagacattattttaatttatgtagactttTTATTGTAAATAATTTATGATATAC-CTAAATAGT--TTGTAAACAAAAT-CATCTTAAAG-T-TGTA-AGTTAGTGTGGAGAGAGCAGG-TAATATGGTTGCAATTGCTA-CACAAtatcaacaaaaaacttattgtaaataatttatgatatacctaaatagtttgtaaacaaaatcatcttaaagttgtaagttagtgtggagagagcaggtaatatggttgcaattgctacacaa
gi|4 : agtagaaataagcagacattattttaatttatgtagactttatgtgtaccaagacagcacatcaagctctatgctttgaacactaaaaggtaatccaaaatttactattgaacattgcttagaactcttttccacatttaagcaacaataggcaataattgtttaaacccttgctcttaggtgggaaacaaccagaaaaaaacctaacataagatacaacgctgcccctttgtgatgtctatcatatccaaattgtctttctcaatgggtcttataaataaaaaaatgaactgtatattgtaccgtcaaaatgattccacacaatcgacagaaaatgttacattaatgaaacaataggaaatactctatattcagtgtgaacgtacaaaagtgaaacgtttaaagtttgaggaatgtcagtaactaggataacatggctgatgatatatgtattgtggtattaaagtatatgaattggtaggtttcctatgatcttaatagagattataattgccttttttgacttaattgtgtaagacacaatagtaatatttaatatcaacaaaaaacTTGATATTTA-TGAAATGTA--------TGCAT-TA----A-----CA-CATAATCAAG----TAGTT--ATGTTTTGAACAC--AA----------G-GGTC-TTCCAAATATACTACCCTGGAACATGGCTTTGGGTGATTC--AA-GATTATTCTACCCA-ATTGA---------TAGGCAAAT--TCG----------------TGCTC--CGATG--GGACATGAACTAG--A-AAAAAATACCAAC--ACTACCATAAAA-TGCACAAAGCT-CCACTTTGCGATGTCTATCATATT-AAATTGGGTCTACCTTTATGG---A---TA-GATGTCAAACTATGGTTA---GCATGTT-TACT-TC-CATTG--TGTCAACATAGTCTGAAAGAGAATAAAGGGT-T---ATGTAT--GAAT--AACAATTCATAAAAAAAAAAT---AACA-CA--------AGTTAC-ATATCAAGGG--TACAAATGTAGAA-GTTAGCAGGTT--AGGA-TAATCAATACCATTAAAACTGTAGAGAACTATATCTG-TTATGC-T-T--AT-GTGGT-TCTAAAATA
gi|5 : cgatatttgcttttattatagaaatcaaaagatcaacacaaagccagtaaatattgagcatgatgataattttgctaataaataaagaacaAGGAAT-GGCAAATAATGGCCT----AAAC-TCTTTGTTC--CAAGA--GGACAC-ATCCAG--A-GAAAA----AACCTAAGTCGCATAAAAATACACTAAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GGTCTGCCCTTATGG---T---TA-GA-ATCAGAC-AT--ATA--TGCATGTT-TGCC-TCAAAATG--TGC---CACAACCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATTG--AACAATTCAT------AAGAT---AACA-TATACATTGTAGTTCACTTGT--AAGG--TGCGGAAGTAGAATTTT-GAAGGTTTAAGGA-T-GCTAAT--------AATTATGGAGAAC-ATATC---TGATGT-TCT--AG-GTGGTATTGAAAGTATATAAAAGATTGGTAG-ATGCTCTATGATCTTTCTAGAGATTACAATTGCCTTTTATTGAC-TACTTGTGCTATGACTGTAG---TAATGTTAAAATAACGGTACAGATTGTGCAGGAAAATCGCATTATTTTTGCTGTTTTTTATTATAAAGAATTCATAATATACgtctatt
gi|6 : T-AC----A-----CA-CA-AACCAAG----G---T--CTGTTTTGAACAG-TAA----------G-GGTCATCCCAAA-ATG-TATCCTGGAACATTACTT--GGTG-CTC--AA-TAT-ATTCTTTCTACATTAAAGCAAGGAATAGGCAGATGATGTCCT----AAAT-CCTTTGCTC--CAAAA--GGACAC-AACCAG--A-AAAAA-----AACTAAGTAGCATAAAAATACATAAAGCTTCCACTTTGCAATGTCTATCATATC-AAATC-GGTCTACCCTTG
gi|6 : ttttgcata----------------------AAGCTTCCACT-TTGCA-ATGTCTATCATATCAA-ATCGGTC--TA--CCCTT--G--GATA--G-CAC--AACAATATGG-TGTT-A--GTGGCAA-TTTG-----TCCCCTA-------AAGTGG-TACC------GA-------ACAACCTTTC-----TG-GCT-C-ACGGACgatagcacaacaatatggtgttagtggcaatttgtcccctaaagtggtaccgaacaacctttctggctcacggac
gi|7 : ttttgcatatacacacaaaccaaggtctgttttgaacagtaagggtcatcccaaaatgtatcctggaacattacttggtgctcaatatattctttctacattaaagcaaggaataggcagatgatgtcctaaatcctttgctccaaaaggacacaaccagaaaaaaaactaagtagcataaaaatacataT-GC----A-----CA-CA-AACCAAG----T---T--ACGTTTTGAACAC-TAA----------G-AGTCATTCCAAA-ATG-TACCCTTGAACATTGCTT--GGTG-CTCTTAA-GAT-A----CCCCACAATAAAGCAAGGAATAGGCAAATAATGG------------CCTTTGCTCCGCGAGG--GGACAC-AATCAG--A-AAAAT----AAACTTGTTACCAT-AGAATACACAAAGCTGCCACTTTGCGGTGTCTATCATATC-AAATT-GGTTTACACTTG-GG-------TA-GT-AT--AAC-A
gi|8 : atgattaaatgtttgcatgaatataagcaaaactaaattaatataatttattcataCAAA-T-TGTGTAGTTAGTGTGCA--GA--ATGAT-ATATGACTGC-AT-G-TAACAAAATACGAG-GC--TAAA---AA-CAGA-ATTACGGTG-TC-CTGAAAATAAAAAAAAACA-T-A-GCTCATACGTTA-------------------------------GC-GTCA---TTGTGC-TGTTTATCATACGGGTAATGGT---TA--C---TATATTGATATTG-TCC-AAACAAAA--A-TG-A-ATTATGAAAAATTT--------------TCCCCAAAGTAG-TACCCGATGTGATATGAGTCCTATTTGGCCT-CTTGCGCTTC-ATGGACTAagatggtat
gi|9 : atagtctattaaatacggaTTCTCCCCACGTTACAGCAAATAATAGACAAATAATGACCTTTAAAAAT-CCTTTGCTG--CGAGG--AGACAC-AACCAGTAG-AAAAA----CAACCAACTACCATAAAA-TGCACAGAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GCTCTACCTTTATGG---TTTATA-AA-ATCAAAC-AA--TGA--TGCATGTT-TATC-TGAAAGTG--TGC---CACAATCTGGCAGAAAAG-GGGGATATA-CATGTAC--AT-T--AAtgt
Alignments
lowQualScore : 1 444444 1 111 11 111 2222222222 1111111111 11111111 2222222222 11 22222 1 2222222 111 1111 111 1111 111111 111 2222222 22222222 1 1 222 55555555555555 111111 11 1111 22222 9999999999999999999999999999 111 22222222222222222 1 222222222222 33333333333333 111111
lowQualScore : 5 1 000000 6 3 7 7 7 5 2 7 2 222 44 3 11 0 444 3 4444444444 2 5 7777777777 5 5 88888888 77 5 5555555555 5 5 5 66 4 66 55 4 0 55 88888 3 44 44 3 33 3 55555 55 1 3 3 3 1111111 5 5 4 5 99 99 6 1 6 99 888 0 5555 6 6 1 000 4444 0 999999 111 6 1111111 77 88 99 1 6 6 6 44444444 44 6 1 3 6 2 99 6 5 3 0 1 3 0 2 3 888 8 3 3 1 1 0 0 0 99999999999999 1 1 99 666 0 5 5 5 5 99 888888 6 66 7777 77777 33 3333333333333333333333333333 3 111 99 5 6 6 22222222222222222 7 6 1 333333333333 5 11111111111111 555 4 999999 66 2 2 5 5 5
lowQualScore : . . ...... . . . . . . . . . ... .. . .. . ... . .......... . . .......... . . ........ .. . .......... . . . .. . .. .. . . .. ..... . .. .. . .. . ..... .. . . . . ....... . . . . .. .. . . . .. ... . .... . . . ... .... . ...... ... . ....... .. .. .. . . . . ........ .. . . . . . .. . . . . . . . . . ... . . . . . . . . .............. . . .. ... . . . . . .. ...... . .. .... ..... .. ............................ . ... .. . . . ................. . . . ............ . .............. ... . ...... .. . . . . .
lowQualScore : 5 0 777777 7 7 3 3 3 5 5 0 5 444 66 2 00 8 000 2 3333333333 0 7 4444444444 7 7 77777777 99 7 0000000000 7 7 7 11 4 11 11 4 8 55 88888 1 66 66 6 66 6 55555 88 0 3 6 6 7777777 7 7 3 7 22 22 7 0 7 22 333 3 0000 7 7 0 222 5555 8 222222 777 7 7777777 77 33 22 7 7 7 7 22222222 55 7 0 2 7 5 22 7 6 2 0 0 2 0 5 2 555 0 2 8 4 0 8 8 8 22222222222222 0 7 22 888 8 0 0 0 7 22 555555 7 22 0000 66666 88 8888888888888888888888888888 2 444 33 7 7 7 22222222222222222 3 7 3 999999999999 7 99999999999999 888 4 444444 99 2 0 7 7 7
consensus : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAANA--TACACTTATATCTCACAC--TAAG----------------------AAGCTGCCACT-TTGCGCATGTC-TATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-CGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
Reference ( family-618 ) : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTGATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGGATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAACA--TACACTTATATCTCACAC--TAAG----------------------AAGCTGCCACT-TTGCGCATGTC-TATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-CGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
gi|1 : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTGT------ACTGTAATTTAAAGCTATA-ATTGGCATCTA-GTACAAAGTACTCGTCATAGTCATAAAGTACAGTCAGCCCATGACAAG--------------AATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCCCCG--TGTTAATATTTG---GCAGTATG-ATTAATCTTTGCATAAT----AATAAGCA-AA-AATTAAATAATT---T--ATGTAT---ACACATAAATCAAGTTCTG-TGTAATCCCATA-ATG-TACCCCGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACGTTAAAGCAAGGAAT--------------CT----AAAC-TCTTTGTTC--CAAGG--GGACAC-AATCAG--G-AAAAAAAC-CAACT-ACTAGCATAAAAATACACTAAGCTGCCACATTGCGATGTCCTTCATATC-AAATT-GGTCTACCTTTGTGG---T---TA-GA-ATAAAAC-AT--TTA--TACATGTT-TTCC-TCAAAATG--TGC---CACAATCTGATAGAAAA----AGAT-TATCAGAGACTGATATTAAATAATTCAT------AATATAAAAATATTA-------TAGTTCA-CTGT-AAAGGTATACAAAAGCAGAATGTT-GAAGGTTTAAGTA-T-GTCAAT--------AACTGTGGAGAAC-ATACCTGATGATGC-TCTAGAT-ATGGTATTTAAATTATATAAAAGATTGGTAGAATGTTCTATGACCTTTCTAGAGATTATAATTGCCTATTATTGTC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTATGGTACAAATTGTGCAGGAAAATCACATCATTTTTGGTATTTTTTATTGTATAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTC-------------TAAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATACGAG-GC--TAAA---AAGCAGA-ATTGAGGTA-CCTTT----TTAAAG-----ACACTTATACCTCATAC--T-------------------------AAGCTGCCAC--TTGTGCATGTC-TATCATACAGG-AATGGT---TA--C---TAGG--GATGTTG-TCCTAAACAAAA--A-TGCA-T--ATGAGAA-TTTGCCCCCCCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAACTTTGCCTACTTG-GCT-C-ATGGACTA
gi|10 : ttgctactctgtggcattttctactgcattttagtgT-AC----A-----CA-CA-AACCAAG----T---T--CTTTTTTGAACAC-TAA----------G-GGCCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-TTTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGTCCT----AAAC-CCTTTGCTC--CGAAA--GGACAC-AACCAG--ACAAAAATAACCAACTAACTAGCATAAAAATACATAAAGTTGCCATTTTCCGATGTCTATCATATC-AAATT-GGTCAACTCTT
gi|11 : ataATGATTGC-ATTG-TA-ATCAATGCAAGCGT--GAAATAAA--CAGA-ATTAAA-TA-ACCTG----TAAAAACA--TCCACTTAGATCTCACAC--TAAGT---------------------AAG----CACTGTTGCAC--GTCTTATCA-ACAAG-AATGGT---AACTC---TAGG--AATATTGTCCCTAAGCAAAA--GCCTCA-AACATGAGAA-ATT---------------CTCTTATAGTGGTTACCT-----GAT--GGGTCCAATTTTGTTTGTCTG-GCT-TAAGGGACTA
gi|12 : TG-TTAAAATTACAGTACGAATTGTGCAGGAAAATCACATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATAATCTACATAGTTATTGTAAACAAAACATATCTTC-------------TAAGTATGTAAAGA--ATC-T-ATATGGTAGC-ACTG-TA-CAAATTGCGAT-TCAGTAAA---A--CTGATATTAt
gi|13 : gGACATTTATGTACGAAGAACTCTTGATAATCCTACAGTACAGTTAAACCATGACAAGATATGTGTT---GCAATGGGAAATTTTGGTTTAGTAGAAAATTAAAAATCTCAAAAAGCTCCATTTATTAATATTTG---GCAGGATG-A--------Tttttttcaa
gi|14 : ACATTGTGATAGGATATTGCTGTTTA-----A---------AAAACTATGTTT-GGCATCTA-GTAGAAAGAACCTTTTATAATCATAAAGTACAGGCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCTCCA--TGtaatttttgcataaaaataagcaaacattatactagtatataa
gi|15 : CTT--GGTG-CTC--TA-CAT-ATTCTTCCCATATTAAAGCAAAGAATAGGCAATTAATGTCCT----AAAC-CCTTTGCTC--CGAAA--AGACAT-AACCAGA-A-AAAAA----CAACTAACTAGCATAAAAATACATAAAGCGGCCATTT
gi|16 : TTTTTTATTGTAAAGAATTCATAATATACTCTACATAGATATTGTTAGCAAACTATGTCTT-----T-TTT--A--AAGTGTATAAAGA--ATC-C-ATATGGTAGC-ATTG-TA-CACAATATGAG-
gi|17 : TAGGCAAATGATGGCCT--------------GCTC--TGCAT--TGACAC-AACCAGTAG-AAAAA----CAACTAACTACCATAAAA-TACGTAAAGCTGCCATTTTGCAATGTCTATCATATC-AAACT-G
gi|18 : TAAC-ATTT-TA-CAAAATATGGG-GC--TAAA---A--AATA-ATCAAGGTA--CTTG----TAAAAAGA---ACACTTATATCTGACAC--T-------------------------GAGCTGCCA-T-TTGTGCATGTC-TACCATACtt
gi|19 : CTTTGCGATGTCTATCATATC-AAATT-GGTAAATCCTTGag
gi|19 : CT-TTGCG-ATGTC-TATCATATCAA-ATTGGTAAATC--C---T-TG--GATA--------ACACAAGA--T-CGTATA--GTGGCAA-T--------CCCCCCCCCCTCCCA-AGTGA-Tgataacacaagatcgtatagtggcaatcccccccccctcccaagtgatctgactcatagact
gi|2 : CAACTACA-CTGTACCTGAGAAGATACAGAAACATTGTGATAGAATATTGCTGTGTACAGTAACTGTAATTCAA-GCTATATTTTTGCATTTATGTACAAAGAACTTTTGTTTATCATAAAGTACAGTCAACCCATGACAAGGTATGTTTTACAACAATTGGGAAATTTGCTTTATTAGAAAATCAAAAATCACACAAACCTCCA--TGATAAT-TTTG---GCAGGATG-A--------TGCAT-AC----A-----CA-CA-AATCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--AGTG-ATC--AA-TAT-ATTCCTCACACATTAAAGCAAGGAATACGCAAATAATGGCCT----AACC-TCTTTGTTC--CGAGG--GAACAC-AACCAG--A-AAAAA----CAACTTACTACCGTAGAA-TACTCAAAGCTGCCACTTTGCAATGTCTATCATATC-AAATT-GGTTTACCCTTGTGG---T---TA-AA-ATCAAAC-AT--TTA--TGCATGTT-TTCC-TCAAAATG--TGC---CACGATCTGATAGAAAAT-AGAGAT-TA-CATGTAC--ATAT--AATAATTCAT------AAGAT---AATA-TA-------TAGTTCA-ATGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GCCAAT--------AACTAAGGAAAAC-ATAACTGATGGTGC-TCT--AT-GTGGTATTTAAAGTATAAAAAAGATTGGTAG-ATGTTCTATGACCTTTATAGAGATTATAATTGCTTTTTATTGAC-TACTTCTACTATGACTATAG----GATG-TTAAAATTACGGTATAAGTTGTGCAGGAAAATCGCATTCTTTTTTATGTTTTTTATTGTAAATAATTCATAATATACTCCACATAGTTA-TGTAAACAAAATATGTCTTCAAAGTGTGT--GGTTAGTGTGTAAAGA--ATC-T-AGATGGTAGC-ACTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAATGTATCTTTT----TAAAAACACTTACATGTATATCTCACAA--TAAGNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCACT-TTGTGCATCTC-TATCATACAGG-AATGGT---TA--C---TAGG--GAAATTG-CCCTAAACAAAA--A-TGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCC-AGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAActgactcatagact
gi|20 : T------AAGAT---AATA-TA-------TAGTTCA-TTGT-AAAGG--TACAATAGTAGAATGTT-GAAGGTTTA---A-T-GTCAAT--------AACTAT-GAAAAC-ATATCTGATGGTGC-TCT--AT-GTCGTAaag
gi|21 : AACAATGAAGAATTTTGCTTTATTAGAAAAATAAA---CTCAAAAAGGCCCA--TGTTAATATTTGAAAGCGGTGTG-G--------T
gi|22 : gtattagcctaGGAACATTGCTT--GGTG-CTC--AAATAT-ATTCTTCCCACGTTAAAGCAAGGAATGGGCAAATAATG---T------AC-CCTT
gi|23 : -----CCCCCCCCCCCCCCC-AGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAA
gi|24 : gcttacccAAAA--A-TGCA-T--ATAAGAA-CTTG-----CCTCC---------------A-TAC-------GAT--GGGTCCAATTTTGCCTA
gi|25 : TATTTTTGGTGCTTTTAATTGTAAAGAATTCATAATATACTCCACAT
gi|26 : CAAGGAATGGGCAAATAATGGCCT----AAACTCTTTTGTTT--CAAGG--GTAC
gi|27 : -AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GGT-C-ATGGACTA
gi|3 : -A--------TGTGT-ACCAAGA-----CAGCA-CATCAAG----C---TCTATGCTTTGAACAC-TAA----------AAGGTAATCC-AAA-ATT-TACTATTGAACATTGCTT--AGAA-CTC------------TTTTCCACATTTAAGCAAC-AATAGGCAA-TAATTGTTT----AAAC-CCTT-GCTC--TTAGGTGGGAAAC-AACCAG--A-AAAAA------AC---CTAACATAAGA---TACAACGCTGCCCCTTTGTGATGTCTATCATATCCAAATT-G-TCTTTCTCAATGGGTCT---TATAA-ATAAAAA-AA--TGAACTGTATATTGTACCGTCAAAATGATTCCA--CACAATC-GACAGAAAAT-G----T-TA-CAT-TA---ATGA--AACAAT--AG------GAAAT---ACTC-TA-------TA-TTCA-GTGT-GAACG--TACAAAAGTGAAACGTT-TAAAGTTTGAGGAAT-GTCAGT--------AACTA-GGATAAC-ATGGCTGATGATATATGT--ATTGTGGTATT-AAAGTATATGAA---TTGGTAG-GTTTCCTATGATCTTAATAGAGATTATAATTGCCTTTT-TTGACTTAATTGTG-TAAGAC-ACAATAGTAATATTTAATATCA----ACAA----------AAAAC----TTATT----------------GTAAATAATTTATGATATAC-CTAAATAGT--TTGTAAACAAAAT-CATCTTAAAG-T-TGTA-AGTTAGTGTGGAGAGAGCAGG-TAATATGGTTGCAATTGCTA-CACAA
gi|4 : agtagaaataagcagacattattttaatttatgtagactttTTGATATTTA----TGAAATGTA--------TGCAT-TA----A-----CA-CATAATCAAG----TAGTT--ATGTTTTGAACAC--AA----------G-GGTC-TTCCAAATATACTACCCTGGAACATGGCTTTGGGTGATTC--AA-GATTATTCTACCCA-ATTGA---------TAGGCAAAT--TCG----------------TGCTC--CGATG--GGACATGAACTAG--A-AAAAAATACCAAC--ACTACCATAAAA-TGCACAAAGCT-CCACTTTGCGATGTCTATCATATT-AAATTGGGTCTACCTTTATGG---A---TA-GATGTCAAACTATGGTTA---GCATGTT-TACT-TC-CATTG--TGTCAACATAGTCTGAAAGAGAATAAAGGGT-T---ATGTAT--GAAT--AACAATTCATAAAAAAAAAAT---AACA-CA--------AGTTAC-ATATCAAGGG--TACAAATGTAGAA-GTTAGCAGGTT--AGGA-TAATCAATACCATTAAAACTGTAGAGAACTATATCTG-TTATGC-T-T--AT-GTGGT-TCTAAAATA
gi|5 : cgatatttgcttttattatagaaatcaaaagatcaacacaaagccagtaaatattgagcatgatgataattttgctaataaataaagaacaAGGAAT-GGCAAATAATGGCCT----AAAC-TCTTTGTTC--CAAGA--GGACAC-ATCCAG--A-GAAAA----AACCTAAGTCGCATAAAAATACACTAAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GGTCTGCCCTTATGG---T---TA-GA-ATCAGAC-AT--ATA--TGCATGTT-TGCC-TCAAAATG--TGC---CACAACCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATTG--AACAATTCAT------AAGAT---AACA-TATACATTGTAGTTCACTTGT--AAGG--TGCGGAAGTAGAATTTT-GAAGGTTTAAGGA-T-GCTAAT--------AATTATGGAGAAC-ATATC---TGATGT-TCT--AG-GTGGTATTGAAAGTATATAAAAGATTGGTAG-ATGCTCTATGATCTTTCTAGAGATTACAATTGCCTTTTATTGAC-TACTTGTGCTATGACTGTAG---TAATG-TTAAAATAACGGTACAGATTGTGCAGGAAAATCGCATTATTTTTGCTGTTTTTTATTATAAAGAATTCATAATATACgtctatt
gi|6 : T-AC----A-----CA-CA-AACCAAG----G---T--CTGTTTTGAACAG-TAA----------G-GGTCATCCCAAA-ATG-TATCCTGGAACATTACTT--GGTG-CTC--AA-TAT-ATTCTTTCTACATTAAAGCAAGGAATAGGCAGATGATGTCCT----AAAT-CCTTTGCTC--CAAAA--GGACAC-AACCAG--A-AAAAA-----AACTAAGTAGCATAAAAATACATAAAGCTTCCACTTTGCAATGTCTATCATATC-AAATC-GGTCTACCCTTG
gi|6 : ttttgcata----------------------AAGCTTCCACT-TTGCA-ATGTC-TATCATATCAA-ATCGGTC--TA--CCCTT--G--GATA--G-CAC--AACAATATGG-TGTT-A--GTGGCAA-TTTG------------TCCCCTAA-AGTGG-TACC------GA-------ACAACCTTTC-----TG-GCT-C-ACGGACgatagcacaacaatatggtgttagtggcaatttgtcccctaaagtggtaccgaacaacctttctggctcacggac
gi|7 : ttttgcatatacacacaaaccaaggtctgttttgaacagtaagggtcatcccaaaatgtatcctggaacattacttggtgctcaatatattctttctacattaaagcaaggaataggcagatgatgtcctaaatcctttgctccaaaaggacacaaccagaaaaaaaactaagtagcataaaaatacataT-GC----A-----CA-CA-AACCAAG----T---T--ACGTTTTGAACAC-TAA----------G-AGTCATTCCAAA-ATG-TACCCTTGAACATTGCTT--GGTG-CTCTTAA-GAT-A----CCCCACAATAAAGCAAGGAATAGGCAAATAATGG------------CCTTTGCTCCGCGAGG--GGACAC-AATCAG--A-AAAAT----AAACTTGTTACCAT-AGAATACACAAAGCTGCCACTTTGCGGTGTCTATCATATC-AAATT-GGTTTACACTTG-GG-------TA-GT-AT--AAC-A
gi|8 : atgattaaatgtttgcatgaatataagcaaaactaaattaatataatttattcataCAAA-T-TGTGTAGTTAGTGTGCA--GA--ATGAT-ATATGACTGC-AT-G-TAACAAAATACGAG-GC--TAAA---AA-CAGA-ATTACGGTG-TCCTGAAAATAAAAAAA--AACA----TAGCTCATACGTTA--------------------------GC-GTCA---TTGTGC-TGTT-TATCATACGGGTAATGGT---TA--C---TATATTGATATTG-TCC-AAACAAAA--A-TG-A-ATTATGAAAAATTT--------------TCCCCAA-AGTAG-TACCCGATGTGATATGAGTCCTATTTGGCCT-CTTGCGCTTC-ATGGACTAagatggtat
gi|9 : atagtctattaaatacggaTTCTCCCCACGTTACAGCAAATAATAGACAAATAATGACCTTTAAAAAT-CCTTTGCTG--CGAGG--AGACAC-AACCAGTAG-AAAAA----CAACCAACTACCATAAAA-TGCACAGAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GCTCTACCTTTATGG---TTTATA-AA-ATCAAAC-AA--TGA--TGCATGTT-TATC-TGAAAGTG--TGC---CACAATCTGGCAGAAAAG-GGGGATATA-CATGTAC--AT-T--AAtgt
Alignments
lowQualScore : 1 444444 1 111 11 111 2222222222 1111111111 11111111 2222222222 11 22222 1 2222222 111 1111 111 1111 111111 111 2222222 22222222 1 1 222 55555555555555 111111 11 1111 22222 9999999999999999999999999999 111 22222222222222222 1 222222222222 33333333333333 111111
lowQualScore : 5 1 000000 6 3 7 7 7 5 1 7 2 222 44 3 11 0 444 1 4444444444 2 5 7777777777 5 5 88888888 77 5 5555555555 5 5 5 66 4 66 55 4 0 55 88888 3 44 44 3 33 3 55555 55 1 3 3 3 1111111 5 5 4 5 99 99 6 1 6 99 888 0 5555 6 6 1 000 4444 0 999999 111 6 1111111 77 88 99 1 6 6 6 44444444 44 6 1 3 6 2 99 6 5 3 0 1 3 0 2 3 888 8 3 3 1 1 0 0 0 99999999999999 1 1 99 666 0 5 5 5 5 99 888888 6 66 7777 66666 33 3333333333333333333333333333 3 111 99 5 6 6 22222222222222222 7 6 1 333333333333 5 11111111111111 555 4 999999 66 2 2 5 5 5
lowQualScore : . . ...... . . . . . . . . . ... .. . .. . ... . .......... . . .......... . . ........ .. . .......... . . . .. . .. .. . . .. ..... . .. .. . .. . ..... .. . . . . ....... . . . . .. .. . . . .. ... . .... . . . ... .... . ...... ... . ....... .. .. .. . . . . ........ .. . . . . . .. . . . . . . . . . ... . . . . . . . . .............. . . .. ... . . . . . .. ...... . .. .... ..... .. ............................ . ... .. . . . ................. . . . ............ . .............. ... . ...... .. . . . . .
lowQualScore : 5 0 777777 7 7 3 3 3 5 0 0 5 444 66 2 00 8 000 0 3333333333 0 7 4444444444 7 7 77777777 99 7 0000000000 7 7 7 11 4 11 11 4 8 55 88888 1 66 66 6 66 6 55555 88 0 3 6 6 7777777 7 7 3 7 22 22 7 0 7 22 333 3 0000 7 7 0 222 5555 8 222222 777 7 7777777 77 33 22 7 7 7 7 22222222 55 7 0 2 7 5 22 7 6 2 0 0 2 0 5 2 555 0 2 8 4 0 8 8 8 22222222222222 0 7 22 888 8 0 0 0 7 22 555555 7 22 0000 44444 88 8888888888888888888888888888 2 444 33 7 7 7 22222222222222222 3 7 3 999999999999 7 99999999999999 888 4 444444 99 2 0 7 7 7
consensus : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAANA--TACACTTATATCTCACAC--TAAG----------------------AAGCTGCCACT-TTGCGCATGTC-TATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-CGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
Reference ( family-618 ) : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAANA--TACACTTATATCTCACAC--TAAG----------------------AAGCTGCCACT-TTGCGCATGTC-TATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-CGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
gi|1 : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTGT------ACTGTAATTTAAAGCTATA-ATTGGCATCTA-GTACAAAGTACTCGTCATAGTCATAAAGTACAGTCAGCCCATGACAAG--------------AATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCCCCG--TGTTAATATTTG---GCAGTATG-ATTAATCTTTGCATAAT----AATAAGCA-AA-AATTAAATAATT---T--ATGTAT---ACACATAAATCAAGTTCTG-TGTAATCCCATA-ATG-TACCCCGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACGTTAAAGCAAGGAAT--------------CT----AAAC-TCTTTGTTC--CAAGG--GGACAC-AATCAG--G-AAAAAAAC-CAACT-ACTAGCATAAAAATACACTAAGCTGCCACATTGCGATGTCCTTCATATC-AAATT-GGTCTACCTTTGTGG---T---TA-GA-ATAAAAC-AT--TTA--TACATGTT-TTCC-TCAAAATG--TGC---CACAATCTGATAGAAAA----AGAT-TATCAGAGACTGATATTAAATAATTCAT------AATATAAAAATATTA-------TAGTTCA-CTGT-AAAGGTATACAAAAGCAGAATGTT-GAAGGTTTAAGTA-T-GTCAAT--------AACTGTGGAGAAC-ATACCTGATGATGC-TCTAGAT-ATGGTATTTAAATTATATAAAAGATTGGTAGAATGTTCTATGACCTTTCTAGAGATTATAATTGCCTATTATTGTC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTATGGTACAAATTGTGCAGGAAAATCACATCATTTTTGGTATTTTTTATTGTATAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTC-------------TAAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATACGAG-GC--TAAA---AAGCAGA-ATTGAGGTA-CCTTT----TTAAAG-----ACACTTATACCTCATAC--T-------------------------AAGCTGCCAC--TTGTGCATGTC-TATCATACAGG-AATGGT---TA--C---TAGG--GATGTTG-TCCTAAACAAAA--A-TGCA-T--ATGAGAA-TTTGCCCCCCCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAACTTTGCCTACTTG-GCT-C-ATGGACTA
gi|10 : ttgctactctgtggcattttctactgcattttagtgT-AC----A-----CA-CA-AACCAAG----T---T--CTTTTTTGAACAC-TAA----------G-GGCCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-TTTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGTCCT----AAAC-CCTTTGCTC--CGAAA--GGACAC-AACCAG--ACAAAAATAACCAACTAACTAGCATAAAAATACATAAAGTTGCCATTTTCCGATGTCTATCATATC-AAATT-GGTCAACTCTT
gi|11 : ataATGATTGC-ATTG-TA-ATCAATGCAAGCGT--GAAATAAA--CAGA-ATTAAA-TA-ACCTG----TAAAAACA--TCCACTTAGATCTCACAC--TAAGT---------------------AAG----CACTGTTGCAC--GTCTTATCA-ACAAG-AATGGT---AACTC---TAGG--AATATTGTCCCTAAGCAAAA--GCCTCA-AACATGAGAA-ATT---------------CTCTTATAGTGGTTACCT-----GAT--GGGTCCAATTTTGTTTGTCTG-GCT-TAAGGGACTA
gi|12 : TG-TTAAAATTACAGTACGAATTGTGCAGGAAAATCACATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATAATCTACATAGTTATTGTAAACAAAACATATCTTC-------------TAAGTATGTAAAGA--ATC-T-ATATGGTAGC-ACTG-TA-CAAATTGCGAT-TCAGTAAA---A--CTGATATTAt
gi|13 : gGACATTTATGTACGAAGAACTCTTGATAATCCTACAGTACAGTTAAACCATGACAAGATATGTGTT---GCAATGGGAAATTTTGGTTTAGTAGAAAATTAAAAATCTCAAAAAGCTCCATTTATTAATATTTG---GCAGGATG-A--------Tttttttcaa
gi|14 : ACATTGTGATAGGATATTGCTGTTTA-----A---------AAAACTATGTTT-GGCATCTA-GTAGAAAGAACCTTTTATAATCATAAAGTACAGGCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCTCCA--TGtaatttttgcataaaaataagcaaacattatactagtatataa
gi|15 : CTT--GGTG-CTC--TA-CAT-ATTCTTCCCATATTAAAGCAAAGAATAGGCAATTAATGTCCT----AAAC-CCTTTGCTC--CGAAA--AGACAT-AACCAGA-A-AAAAA----CAACTAACTAGCATAAAAATACATAAAGCGGCCATTT
gi|16 : TTTTTTATTGTAAAGAATTCATAATATACTCTACATAGATATTGTTAGCAAACTATGTCTT-----T-TTT--A--AAGTGTATAAAGA--ATC-C-ATATGGTAGC-ATTG-TA-CACAATATGAG-
gi|17 : TAGGCAAATGATGGCCT--------------GCTC--TGCAT--TGACAC-AACCAGTAG-AAAAA----CAACTAACTACCATAAAA-TACGTAAAGCTGCCATTTTGCAATGTCTATCATATC-AAACT-G
gi|18 : TAAC-ATTT-TA-CAAAATATGGG-GC--TAAA---A--AATA-ATCAAGGTA--CTTG----TAAAAAGA---ACACTTATATCTGACAC--T-------------------------GAGCTGCCA-T-TTGTGCATGTC-TACCATACtt
gi|19 : CTTTGCGATGTCTATCATATC-AAATT-GGTAAATCCTTGag
gi|19 : CT-TTGCG-ATGTC-TATCATATCAA-ATTGGTAAATC--C---T-TG--GATA--------ACACAAGA--T-CGTATA--GTGGCAA-T--------CCCCCCCCCCTCCCA-AGTGA-Tgataacacaagatcgtatagtggcaatcccccccccctcccaagtgatctgactcatagact
gi|2 : CAACTACA-CTGTACCTGAGAAGATACAGAAACATTGTGATAGAATATTGCTGTGTACAGTAACTGTAATTCAA-GCTATATTTTTGCATTTATGTACAAAGAACTTTTGTTTATCATAAAGTACAGTCAACCCATGACAAGGTATGTTTTACAACAATTGGGAAATTTGCTTTATTAGAAAATCAAAAATCACACAAACCTCCA--TGATAAT-TTTG---GCAGGATG-A--------TGCAT-AC----A-----CA-CA-AATCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--AGTG-ATC--AA-TAT-ATTCCTCACACATTAAAGCAAGGAATACGCAAATAATGGCCT----AACC-TCTTTGTTC--CGAGG--GAACAC-AACCAG--A-AAAAA----CAACTTACTACCGTAGAA-TACTCAAAGCTGCCACTTTGCAATGTCTATCATATC-AAATT-GGTTTACCCTTGTGG---T---TA-AA-ATCAAAC-AT--TTA--TGCATGTT-TTCC-TCAAAATG--TGC---CACGATCTGATAGAAAAT-AGAGAT-TA-CATGTAC--ATAT--AATAATTCAT------AAGAT---AATA-TA-------TAGTTCA-ATGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GCCAAT--------AACTAAGGAAAAC-ATAACTGATGGTGC-TCT--AT-GTGGTATTTAAAGTATAAAAAAGATTGGTAG-ATGTTCTATGACCTTTATAGAGATTATAATTGCTTTTTATTGAC-TACTTCTACTATGACTATAG----GATG-TTAAAATTACGGTATAAGTTGTGCAGGAAAATCGCATTCTTTTTTATGTTTTTTATTGTAAATAATTCATAATATACTCCACATAGTTA-TGTAAACAAAATATGTCTTCAAAGTGTGT--GGTTAGTGTGTAAAGA--ATC-T-AGATGGTAGC-ACTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAATGTATCTTTT----TAAAAACACTTACATGTATATCTCACAA--TAAGNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCACT-TTGTGCATCTC-TATCATACAGG-AATGGT---TA--C---TAGG--GAAATTG-CCCTAAACAAAA--A-TGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCC-AGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAActgactcatagact
gi|20 : T------AAGAT---AATA-TA-------TAGTTCA-TTGT-AAAGG--TACAATAGTAGAATGTT-GAAGGTTTA---A-T-GTCAAT--------AACTAT-GAAAAC-ATATCTGATGGTGC-TCT--AT-GTCGTAaag
gi|21 : AACAATGAAGAATTTTGCTTTATTAGAAAAATAAA---CTCAAAAAGGCCCA--TGTTAATATTTGAAAGCGGTGTG-G--------T
gi|22 : gtattagcctaGGAACATTGCTT--GGTG-CTC--AAATAT-ATTCTTCCCACGTTAAAGCAAGGAATGGGCAAATAATG---T------AC-CCTT
gi|23 : -----CCCCCCCCCCCCCCC-AGTGG-TACC------GAT--GACTCCAATTCTGCTTACTTG-GCT-C-ATGGACTAA
gi|24 : gcttacccAAAA--A-TGCA-T--ATAAGAA-CTTG-----CCTCC---------------A-TAC-------GAT--GGGTCCAATTTTGCCTA
gi|25 : TATTTTTGGTGCTTTTAATTGTAAAGAATTCATAATATACTCCACAT
gi|26 : CAAGGAATGGGCAAATAATGGCCT----AAACTCTTTTGTTT--CAAGG--GTAC
gi|27 : -AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GGT-C-ATGGACTA
gi|3 : -A--------TGTGT-ACCAAGA-----CAGCA-CATCAAG----C---TCTATGCTTTGAACAC-TAA----------AAGGTAATCC-AAA-ATT-TACTATTGAACATTGCTT--AGAA-CTC------------TTTTCCACATTTAAGCAAC-AATAGGCAA-TAATTGTTT----AAAC-CCTT-GCTC--TTAGGTGGGAAAC-AACCAG--A-AAAAA------AC---CTAACATAAGA---TACAACGCTGCCCCTTTGTGATGTCTATCATATCCAAATT-G-TCTTTCTCAATGGGTCT---TATAA-ATAAAAA-AA--TGAACTGTATATTGTACCGTCAAAATGATTCCA--CACAATC-GACAGAAAAT-G----T-TA-CAT-TA---ATGA--AACAAT--AG------GAAAT---ACTC-TA-------TA-TTCA-GTGT-GAACG--TACAAAAGTGAAACGTT-TAAAGTTTGAGGAAT-GTCAGT--------AACTA-GGATAAC-ATGGCTGATGATATATGT--ATTGTGGTATT-AAAGTATATGAA---TTGGTAG-GTTTCCTATGATCTTAATAGAGATTATAATTGCCTTTT-TTGACTTAATTGTG-TAAGAC-ACAATAGTAATATTTAATATCA----ACAA----------AAAAC----TTATT----------------GTAAATAATTTATGATATAC-CTAAATAGT--TTGTAAACAAAAT-CATCTTAAAG-T-TGTA-AGTTAGTGTGGAGAGAGCAGG-TAATATGGTTGCAATTGCTA-CACAA
gi|4 : agtagaaataagcagacattattttaatttatgtagactttTTGATATTTA----TGAAATGTA--------TGCAT-TA----A-----CA-CATAATCAAG----TAGTT--ATGTTTTGAACAC--AA----------G-GGTC-TTCCAAATATACTACCCTGGAACATGGCTTTGGGTGATTC--AA-GATTATTCTACCCA-ATTGA---------TAGGCAAAT--TCG----------------TGCTC--CGATG--GGACATGAACTAG--A-AAAAAATACCAAC--ACTACCATAAAA-TGCACAAAGCT-CCACTTTGCGATGTCTATCATATT-AAATTGGGTCTACCTTTATGG---A---TA-GATGTCAAACTATGGTTA---GCATGTT-TACT-TC-CATTG--TGTCAACATAGTCTGAAAGAGAATAAAGGGT-T---ATGTAT--GAAT--AACAATTCATAAAAAAAAAAT---AACA-CA--------AGTTAC-ATATCAAGGG--TACAAATGTAGAA-GTTAGCAGGTT--AGGA-TAATCAATACCATTAAAACTGTAGAGAACTATATCTG-TTATGC-T-T--AT-GTGGT-TCTAAAATA
gi|5 : cgatatttgcttttattatagaaatcaaaagatcaacacaaagccagtaaatattgagcatgatgataattttgctaataaataaagaacaAGGAAT-GGCAAATAATGGCCT----AAAC-TCTTTGTTC--CAAGA--GGACAC-ATCCAG--A-GAAAA----AACCTAAGTCGCATAAAAATACACTAAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GGTCTGCCCTTATGG---T---TA-GA-ATCAGAC-AT--ATA--TGCATGTT-TGCC-TCAAAATG--TGC---CACAACCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATTG--AACAATTCAT------AAGAT---AACA-TATACATTGTAGTTCACTTGT--AAGG--TGCGGAAGTAGAATTTT-GAAGGTTTAAGGA-T-GCTAAT--------AATTATGGAGAAC-ATATC---TGATGT-TCT--AG-GTGGTATTGAAAGTATATAAAAGATTGGTAG-ATGCTCTATGATCTTTCTAGAGATTACAATTGCCTTTTATTGAC-TACTTGTGCTATGACTGTAG---TAATG-TTAAAATAACGGTACAGATTGTGCAGGAAAATCGCATTATTTTTGCTGTTTTTTATTATAAAGAATTCATAATATACgtctatt
gi|6 : T-AC----A-----CA-CA-AACCAAG----G---T--CTGTTTTGAACAG-TAA----------G-GGTCATCCCAAA-ATG-TATCCTGGAACATTACTT--GGTG-CTC--AA-TAT-ATTCTTTCTACATTAAAGCAAGGAATAGGCAGATGATGTCCT----AAAT-CCTTTGCTC--CAAAA--GGACAC-AACCAG--A-AAAAA-----AACTAAGTAGCATAAAAATACATAAAGCTTCCACTTTGCAATGTCTATCATATC-AAATC-GGTCTACCCTTG
gi|6 : ttttgcata----------------------AAGCTTCCACT-TTGCA-ATGTC-TATCATATCAA-ATCGGTC--TA--CCCTT--G--GATA--G-CAC--AACAATATGG-TGTT-A--GTGGCAA-TTTG------------TCCCCTAA-AGTGG-TACC------GA-------ACAACCTTTC-----TG-GCT-C-ACGGACgatagcacaacaatatggtgttagtggcaatttgtcccctaaagtggtaccgaacaacctttctggctcacggac
gi|7 : ttttgcatatacacacaaaccaaggtctgttttgaacagtaagggtcatcccaaaatgtatcctggaacattacttggtgctcaatatattctttctacattaaagcaaggaataggcagatgatgtcctaaatcctttgctccaaaaggacacaaccagaaaaaaaactaagtagcataaaaatacataT-GC----A-----CA-CA-AACCAAG----T---T--ACGTTTTGAACAC-TAA----------G-AGTCATTCCAAA-ATG-TACCCTTGAACATTGCTT--GGTG-CTCTTAA-GAT-A----CCCCACAATAAAGCAAGGAATAGGCAAATAATGG------------CCTTTGCTCCGCGAGG--GGACAC-AATCAG--A-AAAAT----AAACTTGTTACCAT-AGAATACACAAAGCTGCCACTTTGCGGTGTCTATCATATC-AAATT-GGTTTACACTTG-GG-------TA-GT-AT--AAC-A
gi|8 : atgattaaatgtttgcatgaatataagcaaaactaaattaatataatttattcataCAAA-T-TGTGTAGTTAGTGTGCA--GA--ATGAT-ATATGACTGC-AT-G-TAACAAAATACGAG-GC--TAAA---AA-CAGA-ATTACGGTG-TCCTGAAAATAAAAAAA--AACA----TAGCTCATACGTTA--------------------------GC-GTCA---TTGTGC-TGTT-TATCATACGGGTAATGGT---TA--C---TATATTGATATTG-TCC-AAACAAAA--A-TG-A-ATTATGAAAAATTT--------------TCCCCAA-AGTAG-TACCCGATGTGATATGAGTCCTATTTGGCCT-CTTGCGCTTC-ATGGACTAagatggtat
gi|9 : atagtctattaaatacggaTTCTCCCCACGTTACAGCAAATAATAGACAAATAATGACCTTTAAAAAT-CCTTTGCTG--CGAGG--AGACAC-AACCAGTAG-AAAAA----CAACCAACTACCATAAAA-TGCACAGAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GCTCTACCTTTATGG---TTTATA-AA-ATCAAAC-AA--TGA--TGCATGTT-TATC-TGAAAGTG--TGC---CACAATCTGGCAGAAAAG-GGGGATATA-CATGTAC--AT-T--AAtgt
blockSeqs : . C ACAGTA C C A T T T G A G ACA AA T TT AAA G TA A . CAAGA G T TAGT CT . . A T C TG A TT AT T TC TTAAA T CG TG G TA C TAACC TA G A C G GTCT T T C T GG AC G T G AT CAA TAAA A . G C AT AAAAAA . . TACATTG CT CA . T A A A ACCATTAA AG T A A A C . T T A . A A T C T TAG T C A A G CAAAGTGTGTGG A A GC TA A C A C AG TAAA T TC AAAA CACTT CT TAAGNNNNNNNNNNNNNNNNNNNNNN T CTG CA T A T AACTCTAGG T T T GCCTCAAAC A GCCCCCCCC TAT T CGATGT AT T G C T A
blockSeqs : A . . . T . T T A G ACA AC G . . G A G . A . . T . . . . . . . . . T . TC A . . . . TA . ATACC TA G A . . TTTA . . A . . . . A . . A TAG . . G T GA . . . . A A . T . . . . TA . T A . C . . T A . A A . C T . . C G G A CAAATTGTGTAG A A . AT . . . . . AA . A . CAT CT TAAGT T CT CA . C . AAATCCTTG T . T TGGTGTTA . CCCCCCCC CA . T . T A . . .
blockSeqs : . G G T . AA A . . T A A . A . . T . . . . . . . . . C . GC A . . . . A . C TA C A . . T . . C . . . . A . . . TAG . . G C AT . . . . T A . C . . . . TG . G A . G . . G . . C . . . . . . C A G G AAAGTTGTAAG T A . T . . . . . A . T . AAA TG GTTA T CT C . A . CTACCCTTG T . . TCGTATA . GCCTCC CC . . . T A . . .
blockSeqs : . T . . A G . A . . C . . . . . . . . . T . GC A . . . . . . C TT C A . . A . . C . . . . G . . . GGG . . G C TG . . . . G G . T . . . . T . T . . C . . . . . . . C TTTTA T G . C . . . . . A . . . GA . T . CT A . C . TACTATATT . . . ATGAATT . GT CC . . . C A . . .
blockSeqs : A . A . . G . . . . . . . . . G . GC A . . . . . . C TA A A . . T . . C . . . . A . . . TG . . . . T . . . . A . . . . . . . G . T . . . . . . C T . . T . . . . . A . . T A . G . TACTAGG . . . ATGCAA . . AA . . . C A . . .
blockSeqs : . A . . T . . . . . . . . . T . GT A . . . . . . A TA C . . . . . . . . . . . . . C . ATGCAT . . AA . . . C . . . .
blockSeqs : . . . G . GC A . . . . . . A TT G . . . . . . . . . . . .
blockSeqs : . . . . . TC A . . . . . . C CA G . . . .
blockSeqs : AC . . . . . . . . . C . . .
blockSeqs : G . . . . . . . . . C . . .
blockSeqs : G . . . .
blockSeqs : . . .
blockSeqCons : A********* A********* T******* ********** GC C**** TA TAG* C** AN** *** ** ** CAAGTTGTGTAG** A***** NA*** GT************************** CT* N* NANTCCNTG******** GCGCAA****** GCCCC*********
originalCons : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CATGTAC--ATAT--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAA-T-TGT--AGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAANA--TACACTTATATCTCACAC--TAAG----------------------AAGCTGCCACT-TTGCGCATGTC-TATCATACCGG-AATGGT---TA--C---TAGG--GATATTG-CCCTAAACAAAA--A-CGCA-A--ATGAGAA-TTTG-----CCCCCCCCCCCCCCA-AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
finalCons : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATGA---------TGCGT-ACA---------CA-CA-AACCAAGT-------T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAAC----AACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAATAG-GGAT-TA-CATGTAC--ATAN--AACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAGTTGTGTAG--TNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--TAAAA-----CAGA-ATTAAGGTA-CCTTG----TAAAAANA---ACACTTATATCTCACACGT--------------------------AAGCTGCCACT-TTGCGN-TGTC-TATCATACCGG-AATGGTNANTCCNTG--------GATATTG-CCCTAAACAAAAGCGCAA------ATGAGAA-TTTGCCCC---------CCCCCCA-AGTGG-TACC------GAT--GGGTCCAATTTTGCCTACTTG-GCT-C-ATGGACTAA
Alignments
lowQualScore : 1 444444 1 111 11 111 2222222222 1111111111 11111111 2222222222 11 22222 1 2222222 111 1111 11111 111111 111 2222222 22222222 1 1 222 55555555555 1111 111111 1111 222 2222 6666666666666666666666666 111 1111 1 222222222222222 4444444444444 1111111
lowQualScore : 5 1 000000 6 3 7 7 7 5 1 7 2 222 44 3 11 0 444 1 4444444444 2 5 7777777777 5 5 88888888 77 5 5555555555 5 5 5 66 4 66 55 4 0 55 88888 3 44 44 3 33 3 55555 55 1 3 4 4 1111111 5 5 4 5 99 99 6 1 6 99 888 0 5555 6 6 66666 3 55 0 999999 111 6 1111111 77 88 99 1 6 6 6 44444444 44 6 1 3 6 2 99 6 5 3 0 1 3 0 2 3 888 8 3 3 1 1 0 0 0 88888888888 1 1 99 666 0 5 5 5 5 0000 111111 6 999 7777 44 222 5 7777 6666666666666666666666666 7 4 5 5 444 5 6 6 1 1 8888 7 6 1 222222222222222 5 1111111111111 5 555 4 5 5 6666666 2 2 5 5 5
lowQualScore : . . ...... . . . . . . . . . ... .. . .. . ... . .......... . . .......... . . ........ .. . .......... . . . .. . .. .. . . .. ..... . .. .. . .. . ..... .. . . . . ....... . . . . .. .. . . . .. ... . .... . . ..... . .. . ...... ... . ....... .. .. .. . . . . ........ .. . . . . . .. . . . . . . . . . ... . . . . . . . . ........... . . .. ... . . . . . .... ...... . ... .... .. ... . .... ......................... . . . . ... . . . . . .... . . . ............... . ............. . ... . . . ....... . . . . .
lowQualScore : 5 0 777777 7 7 3 3 3 5 0 0 5 444 66 2 00 8 000 0 3333333333 0 7 4444444444 7 7 77777777 99 7 0000000000 7 7 7 11 4 11 11 4 8 55 88888 1 66 66 6 66 6 55555 88 0 3 0 0 7777777 7 7 3 7 22 22 7 0 7 22 333 3 0000 7 7 77777 7 44 8 222222 777 7 7777777 77 33 22 7 7 7 7 22222222 55 7 0 2 7 5 22 7 6 2 0 0 2 0 5 2 555 0 2 8 4 0 8 8 8 55555555555 0 7 22 888 8 0 0 0 7 8888 888888 7 444 0000 66 000 6 2222 7777777777777777777777777 3 3 7 7 111 7 7 7 0 0 5555 3 7 3 999999999999999 7 7777777777777 0 888 4 0 0 2222222 2 0 7 7 7
consensus : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CA-----TGTACATNNAACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAATTGTGTAGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--T-AAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAANA---ACACTTATATCTCACAC---GTAAG-------------------------CTGCCACT-T-TGCG-ATGTCT-ATCATACCGG-AATGGTNACTCCANGGATATTG-CCCTAAACAAAA--ACG-CA-A--A--TG-AGAATTTG---------CCCCCCC-CCCA-AGTGGT-A-CC-G-------ATGGGTCCAATTTTGCCTACTTG-GC-TC-ATGGACTAA
Reference ( family-618 ) : CAACTACAACTGTANCTGAGAAGACACAGAAACATTGTGATAGGATATTGCTGTGTA-----ACTGTAATTCAAAGCTATATTTTGGCATCTATGTACAAAGAACTCTTNATAATCATAAAGTACAGTCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAANTCGCAAAAAGCTCCA--TGTTAATATTTG---GCGGNATG-A--------TGCGT-AC----A-----CA-CA-AACCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGGCCT----AAAC-CCTTTGCTC--CGAGG--GGACAC-AACCAG--A-AAAAA----CAACTAACTANCATAAAAATACACAAAGCTGCCACTTTGCGATGTCTATCATATC-AAATT-GGTCTACCCTTGTGG---T---TA-GA-ATCAAAC-AT--TTA--TGCATGTT-TNCC-TCAAAATG--TGC---CACAATCTGATAGAAAAT-AGGGAT-TA-CA-----TGTACATANAACAATTCAT------AAGAT---AATA-TA-------TAGTTCA-NTGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GTCAAT--------AACTATGGAGAAC-ATANCTGATGATGC-TCT--AT-GTGGTATTTAAAGTATATAAAAGATTGGTAG-ATGTTCTATGACCTTTNTAGAGATTATAATTGCCTTTTATTGAC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTACGGTACAAATTGTGCAGGAAAATCGCATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTCAAGTTGTGTAGTNAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATGCGAG-GC--T-AAA---A--CAGA-ATTAAGGTA-CCTTG----TAAAAANA---ACACTTATATCTCACAC---GTAAG-------------------------CTGCCACT-T-TGCG-NTGTCT-ATCATACCGG-AATGGTNANTCCNTGGATATTG-CCCTAAACAAAA--GCG-CA-A--A--TG-AGAATTTG---------CCCCCCC-CCCA-AGTGGT-A-CC-G-------ATGGGTCCAATTTTGCCTACTTG-GC-TC-ATGGACTAA
gi|1 : CAACTACAACTGTAACTGAAAAGACACAGAAACACTGTGATAGGATATTGCTGTGT------ACTGTAATTTAAAGCTATA-ATTGGCATCTA-GTACAAAGTACTCGTCATAGTCATAAAGTACAGTCAGCCCATGACAAG--------------AATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCCCCG--TGTTAATATTTG---GCAGTATG-ATTAATCTTTGCATAAT----AATAAGCA-AA-AATTAAATAATT---T--ATGTAT---ACACATAAATCAAGTTCTG-TGTAATCCCATA-ATG-TACCCCGGAACATTGCTT--GGTG-CTC--AA-TAT-ATTCTTCCCACGTTAAAGCAAGGAAT--------------CT----AAAC-TCTTTGTTC--CAAGG--GGACAC-AATCAG--G-AAAAAAAC-CAACT-ACTAGCATAAAAATACACTAAGCTGCCACATTGCGATGTCCTTCATATC-AAATT-GGTCTACCTTTGTGG---T---TA-GA-ATAAAAC-AT--TTA--TACATGTT-TTCC-TCAAAATG--TGC---CACAATCTGATAGAAAA----AGAT-TATCAGAGACTG-ATATTAAATAATTCAT------AATATAAAAATATTA-------TAGTTCA-CTGT-AAAGGTATACAAAAGCAGAATGTT-GAAGGTTTAAGTA-T-GTCAAT--------AACTGTGGAGAAC-ATACCTGATGATGC-TCTAGAT-ATGGTATTTAAATTATATAAAAGATTGGTAGAATGTTCTATGACCTTTCTAGAGATTATAATTGCCTATTATTGTC-TACTTGTGCTATGACTATAGTA-TAATG-TTAAAATTATGGTACAAATTGTGCAGGAAAATCACATCATTTTTGGTATTTTTTATTGTATAGAATTCATAATATACTCCACATAGTTATTGTAAACAAAATATGTCTTC-----------TAAGTGTGTAAAGA--ATC-T-ATATGGTAGC-ATTG-TA-CAAAATACGAG-GC--T-AAA---AAGCAGA-ATTGAGGTA-CCTTT----TTAAA--G---ACACTTATACCTCATAC----TAAG-------------------------CTGCCACT-TGTGC--ATGTCT-ATCATACAGG-AATGGTTACT--AGGGATGTTG-TCCTAAACAAAA--ATG-CA-T--A--TG-AGAATTTGCCCCCCCCCCCCCCCC-CCCA-AGTGGT-A-CC-G-------ATGGGTCCAACTTTGCCTACTTG-GC-TC-ATGGACTA
gi|10 : ttgctactctgtggcattttctactgcattttagtgT-AC----A-----CA-CA-AACCAAG----T---T--CTTTTTTGAACAC-TAA----------G-GGCCATCCCAAA-ATG-TACCCTGGAACATTGCTT--GGTG-CTC--AA-TAT-TTTCTTCCCACATTAAAGCAAGGAATAGGCAAATAATGTCCT----AAAC-CCTTTGCTC--CGAAA--GGACAC-AACCAG--ACAAAAATAACCAACTAACTAGCATAAAAATACATAAAGTTGCCATTTTCCGATGTCTATCATATC-AAATT-GGTCAACTCTT
gi|11 : ataATGATTGC-ATTG-TA-ATCAATGCAAGCGT--G-AAATAAA--CAGA-ATTAAA-TA-ACCTG----TAAAAACAT--CCACTTAGATCTCACACTAAGTAAG-------------------------C----ACTGT-TGCA-C-GTCTTATCA-ACAAG-AATGGTAACTCTAGGAATATTGTCCCTAAGCAAAA--GCCTCA-A--ACATG-AGAAATT---------------CT-CTTATAGTGGTTA-CCTG-------ATGGGTCCAATTTTGTTTGTCTG-GC-TTAAGGGACTA
gi|12 : TG-TTAAAATTACAGTACGAATTGTGCAGGAAAATCACATTATTTTTGGTGTTTTTTATTGTAAAGAATTCATAATATAATCTACATAGTTATTGTAAACAAAACATATCTTC-----------TAAGTATGTAAAGA--ATC-T-ATATGGTAGC-ACTG-TA-CAAATTGCGAT-TCAGT-AAA---A--CTGATATTAt
gi|13 : gGACATTTATGTACGAAGAACTCTTGATAATCCTACAGTACAGTTAAACCATGACAAGATATGTGTT---GCAATGGGAAATTTTGGTTTAGTAGAAAATTAAAAATCTCAAAAAGCTCCATTTATTAATATTTG---GCAGGATG-A--------Tttttttcaa
gi|14 : ACATTGTGATAGGATATTGCTGTTTA-----A---------AAAACTATGTTT-GGCATCTA-GTAGAAAGAACCTTTTATAATCATAAAGTACAGGCAACCCATGACAAGATATGTGTTACAACAATGAGGAATTTTGCTTTATTAGAAAATTAAAACTCGCAAAAAGCTCCA--TGtaatttttgcataaaaataagcaaacattatactagtatataa
gi|15 : CTT--GGTG-CTC--TA-CAT-ATTCTTCCCATATTAAAGCAAAGAATAGGCAATTAATGTCCT----AAAC-CCTTTGCTC--CGAAA--AGACAT-AACCAGA-A-AAAAA----CAACTAACTAGCATAAAAATACATAAAGCGGCCATTT
gi|16 : TTTTTTATTGTAAAGAATTCATAATATACTCTACATAGATATTGTTAGCAAACTATGTCTTT---TT---TA--AAGTGTATAAAGA--ATC-C-ATATGGTAGC-ATTG-TA-CACAATATGAG-
gi|17 : TAGGCAAATGATGGCCT--------------GCTC--TGCAT--TGACAC-AACCAGTAG-AAAAA----CAACTAACTACCATAAAA-TACGTAAAGCTGCCATTTTGCAATGTCTATCATATC-AAACT-G
gi|18 : TAAC-ATTT-TA-CAAAATATGGG-GC--T-AAA---A--AATA-ATCAAGGTA-C-TTG----TAAAAAGA---ACACTTATATCTGACAC----TGAG-------------------------CTGCCA-T-T-TGTGCATGTCT-ACCATACtt
gi|19 : CT-T-TGCG-ATGTCT-ATCATATCAA-ATTGGTAAATCCTTGGATA--------ACACAAGA--TCG-TATA--G--TG-GCAATCCC---------CCCCCCCTCCCA-AGTGAT-ag
gi|2 : CAACTACA-CTGTACCTGAGAAGATACAGAAACATTGTGATAGAATATTGCTGTGTACAGTAACTGTAATTCAA-GCTATATTTTTGCATTTATGTACAAAGAACTTTTGTTTATCATAAAGTACAGTCAACCCATGACAAGGTATGTTTTACAACAATTGGGAAATTTGCTTTATTAGAAAATCAAAAATCACACAAACCTCCA--TGATAAT-TTTG---GCAGGATG-A--------TGCAT-AC----A-----CA-CA-AATCAAG----T---T--ATGTTTTGAACAC-TAA----------G-GGTCATCCCAAA-ATG-TACCCTGGAACATTGCTT--AGTG-ATC--AA-TAT-ATTCCTCACACATTAAAGCAAGGAATACGCAAATAATGGCCT----AACC-TCTTTGTTC--CGAGG--GAACAC-AACCAG--A-AAAAA----CAACTTACTACCGTAGAA-TACTCAAAGCTGCCACTTTGCAATGTCTATCATATC-AAATT-GGTTTACCCTTGTGG---T---TA-AA-ATCAAAC-AT--TTA--TGCATGTT-TTCC-TCAAAATG--TGC---CACGATCTGATAGAAAAT-AGAGAT-TA-CA-----TGTACATATAATAATTCAT------AAGAT---AATA-TA-------TAGTTCA-ATGT-AAAGG--TACAAAAGTAGAATGTT-GAAGGTTTAAGGA-T-GCCAAT--------AACTAAGGAAAAC-ATAACTGATGGTGC-TCT--AT-GTGGTATTTAAAGTATAAAAAAGATTGGTAG-ATGTTCTATGACCTTTATAGAGATTATAATTGCTTTTTATTGAC-TACTTCTACTATGACTATAG----GATG-TTAAAATTACGGTATAAGTTGTGCAGGAAAATCGCATTCTTTTTTATGTTTTTTATTGTAAATAATTCATAATATACTCCACATAGTTA-TGTAAACAAAATATGTCTTCAAAGTGTGTGGTTAGTGTGTAAAGA--ATC-T-AGATGGTAGC-ACTG-TA-CAAAATGCGAG-GC--T-AAA---A--CAGA-ATTAATGTATCTTTT----TAAAAACACTTACATGTATATCTCACA----ATAAGNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCACT-T-TGTGCATCTCT-ATCATACAGG-AATGGTTACT--AGGGAAATTG-CCCTAAACAAAA--ATG-CA-A--A--TG-AGAATTTGCCCC-----CCCCCCC-CCCC-AGTGGT-A-CC-G-------ATGACTCCAATTCTGCTTACTTG-GC-TC-ATGGACTAActgactcatagact
gi|20 : T------AAGAT---AATA-TA-------TAGTTCA-TTGT-AAAGG--TACAATAGTAGAATGTT-GAAGGTTTA---A-T-GTCAAT--------AACTAT-GAAAAC-ATATCTGATGGTGC-TCT--AT-GTCGTAaag
gi|21 : AACAATGAAGAATTTTGCTTTATTAGAAAAATAAA---CTCAAAAAGGCCCA--TGTTAATATTTGAAAGCGGTGTG-G--------T
gi|22 : gtattagcctaGGAACATTGCTT--GGTG-CTC--AAATAT-ATTCTTCCCACGTTAAAGCAAGGAATGGGCAAATAATG---T------AC-CCTT
gi|23 : ---------CCCCCCC-CCCC-AGTGGT-A-CC-G-------ATGACTCCAATTCTGCTTACTTG-GC-TC-ATGGACTAA
gi|24 : gcttacccccccAAAA--ATG-CA-T--A--TA-AGAACTTG---------CCTCC------------AT-A-C--G-------ATGGGTCCAATTTTGCCTA
gi|25 : TATTTTTGGTGCTTTTAATTGTAAAGAATTCATAATATACTCCACAT
gi|26 : CAAGGAATGGGCAAATAATGGCCT----AAACTCTTTTGTTT--CAAGG--GTAC
gi|27 : -AGTGGT-A-CC-G-------ATGGGTCCAATTTTGCCTACTTG-GG-TC-ATGGACTA
gi|3 : -A--------TGTGT-ACCAAGA-----CAGCA-CATCAAG----C---TCTATGCTTTGAACAC-TAA----------AAGGTAATCC-AAA-ATT-TACTATTGAACATTGCTT--AGAA-CTC------------TTTTCCACATTTAAGCAAC-AATAGGCAA-TAATTGTTT----AAAC-CCTT-GCTC--TTAGGTGGGAAAC-AACCAG--A-AAAAA------AC---CTAACATAAGA---TACAACGCTGCCCCTTTGTGATGTCTATCATATCCAAATT-G-TCTTTCTCAATGGGTCT---TATAA-ATAAAAA-AA--TGAACTGTATATTGTACCGTCAAAATGATTCCA--CACAATC-GACAGAAAAT-G----T-TA-CA-----T-TA-ATGAAACAAT--AG------GAAAT---ACTC-TA-------TA-TTCA-GTGT-GAACG--TACAAAAGTGAAACGTT-TAAAGTTTGAGGAAT-GTCAGT--------AACTA-GGATAAC-ATGGCTGATGATATATGT--ATTGTGGTATT-AAAGTATATGAA---TTGGTAG-GTTTCCTATGATCTTAATAGAGATTATAATTGCCTTTT-TTGACTTAATTGTG-TAAGAC-ACAATAGTAATATTTAATATCA----ACAA----------AAAAC----TTATT----------------GTAAATAATTTATGATATAC-CTAAATAGT--TTGTAAACAAAAT-CATCTTAAAGTTGTA-AGTTAGTGTGGAGAGAGCAGG-TAATATGGTTGCAATTGCTA-CACAA
gi|4 : agtagaaataagcagacattattttaatttatgtagactttTTGATATTTA----TGAAATGTA--------TGCAT-TA----A-----CA-CATAATCAAG----TAGTT--ATGTTTTGAACAC--AA----------G-GGTC-TTCCAAATATACTACCCTGGAACATGGCTTTGGGTGATTC--AA-GATTATTCTACCCA-ATTGA---------TAGGCAAAT--TCG----------------TGCTC--CGATG--GGACATGAACTAG--A-AAAAAATACCAAC--ACTACCATAAAA-TGCACAAAGCT-CCACTTTGCGATGTCTATCATATT-AAATTGGGTCTACCTTTATGG---A---TA-GATGTCAAACTATGGTTA---GCATGTT-TACT-TC-CATTG--TGTCAACATAGTCTGAAAGAGAATAAAGGGT-T---A-----TGTATGAATAACAATTCATAAAAAAAAAAT---AACA-CA--------AGTTAC-ATATCAAGGG--TACAAATGTAGAA-GTTAGCAGGTT--AGGA-TAATCAATACCATTAAAACTGTAGAGAACTATATCTG-TTATGC-T-T--AT-GTGGT-TCTAAAATA
gi|5 : cgatatttgcttttattatagaaatcaaaagatcaacacaaagccagtaaatattgagcatgatgataattttgctaataaataaagaacaAGGAAT-GGCAAATAATGGCCT----AAAC-TCTTTGTTC--CAAGA--GGACAC-ATCCAG--A-GAAAA----AACCTAAGTCGCATAAAAATACACTAAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GGTCTGCCCTTATGG---T---TA-GA-ATCAGAC-AT--ATA--TGCATGTT-TGCC-TCAAAATG--TGC---CACAACCTGATAGAAAAT-AGGGAT-TA-CA-----TGTACATTGAACAATTCAT------AAGAT---AACA-TATACATTGTAGTTCACTTGT--AAGG--TGCGGAAGTAGAATTTT-GAAGGTTTAAGGA-T-GCTAAT--------AATTATGGAGAAC-ATATC---TGATGT-TCT--AG-GTGGTATTGAAAGTATATAAAAGATTGGTAG-ATGCTCTATGATCTTTCTAGAGATTACAATTGCCTTTTATTGAC-TACTTGTGCTATGACTGTAG---TAATG-TTAAAATAACGGTACAGATTGTGCAGGAAAATCGCATTATTTTTGCTGTTTTTTATTATAAAGAATTCATAATATACgtctatt
gi|6 : T-AC----A-----CA-CA-AACCAAG----G---T--CTGTTTTGAACAG-TAA----------G-GGTCATCCCAAA-ATG-TATCCTGGAACATTACTT--GGTG-CTC--AA-TAT-ATTCTTTCTACATTAAAGCAAGGAATAGGCAGATGATGTCCT----AAAT-CCTTTGCTC--CAAAA--GGACAC-AACCAG--A-AAAAA-----AACTAAGTAGCATAAAAATACATAAAGCTTCCACTTTGCAATGTCTATCATATC-AAATC-GGTCTACCCTTG
gi|6 : ttttgcataAAG-------------------------CTTCCACT-T-TGCA-ATGTCT-ATCATATCAA-ATCGGTCTACCCTTGGATA--G-CAC--AACAATATGGTG-TT-A--G--TG-GCAATTTG------------TCCC-CTAA-AGTGGT-A-CC-G-------A-----ACAACCTTTC-----TG-GC-TC-ACGGACgatagcacaacaatatggtgttagtggcaatttgtcccctaaagtggtaccgaacaacctttctggctcacggac
gi|7 : ttttgcatatacacacaaaccaaggtctgttttgaacagtaagggtcatcccaaaatgtatcctggaacattacttggtgctcaatatattctttctacattaaagcaaggaataggcagatgatgtcctaaatcctttgctccaaaaggacacaaccagaaaaaaaactaagtagcataaaaatacataT-GC----A-----CA-CA-AACCAAG----T---T--ACGTTTTGAACAC-TAA----------G-AGTCATTCCAAA-ATG-TACCCTTGAACATTGCTT--GGTG-CTCTTAA-GAT-A----CCCCACAATAAAGCAAGGAATAGGCAAATAATGG------------CCTTTGCTCCGCGAGG--GGACAC-AATCAG--A-AAAAT----AAACTTGTTACCAT-AGAATACACAAAGCTGCCACTTTGCGGTGTCTATCATATC-AAATT-GGTTTACACTTG-GG-------TA-GT-AT--AAC-A
gi|8 : atgattaaatgtttgcatgaatataagcaaaactaaattaatataatttattcataCAAATTGTGTAGTTAGTGTGCA--GA--ATGAT-ATATGACTGC-AT-G-TAACAAAATACGAG-GC--TAAAA---A--CAGA-ATTACGGTG-TCCTGAAAATAAAAAAA---A-AC--ATAGCTCATAC---GTTAG-------------------------C-GTCA---T-TGTG-CTGTTT-ATCATACGGGTAATGGTTACTATATTGATATTG-TCC-AAACAAAA--ATG--A-ATTA--TGAAAAATTT--------------TCC-CCAA-AGTAGT-ACCC-GATGTGATATGAGTCCTATTTGGCCT-CTTGCGCTTC-ATGGACTAagatggtat
gi|9 : atagtctattaaatacggaTTCTCCCCACGTTACAGCAAATAATAGACAAATAATGACCTTTAAAAAT-CCTTTGCTG--CGAGG--AGACAC-AACCAGTAG-AAAAA----CAACCAACTACCATAAAA-TGCACAGAGCTGCCACTTTGCGATGTCTATCGTATC-AAATT-GCTCTACCTTTATGG---TTTATA-AA-ATCAAAC-AA--TGA--TGCATGTT-TATC-TGAAAGTG--TGC---CACAATCTGGCAGAAAAG-GGGGATATA-CA-----TGTACATtgt