lowQualScore : 11
lowQualScore : 5 2 8 33 5 2 777 2 5 5 44 2 5 2 444 2 2 666 3 3 3
lowQualScore : . . . .. . . ... . . . .. . . . ... . . ... . . .
lowQualScore : 7 7 0 77 3 7 333 7 3 3 33 7 3 7 777 9 9 555 1 1 1
consensus : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---A-T-T-ACC-TATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
Reference ( gi|8 ) : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---A-T-T-ACT-TATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|7 : TCAG-TGTTTCTGAC-A-TTA--TT-ATT-GC---A-T-T-ACC-TATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|5 : TTGG-TGGTTCTGAC-A-TTCACTT-ATT-GC---A-T-T-ACT--ATCGCA-G-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATCAT
gi|9 : TCGG-TGGTTTTGAC-A-TTC--TT-ATT-GC---A-T-T-ACA-TATCGCA-G-T-TCATGA-GT------A-AA-ATG-AATAAATCAT
gi|4 : TCGG-TGGTTCTGAC-ATTTC--TT-ATT-GC---A---T-ACC-TATCGCA-G-T-TC---AGGTA-T-A-AGAA-ATGAAATAAATC
gi|10 : tTCGG-TG-TTCTGAC-A-TTC--TT-ATT-GC---ATT-T-AC--TATCGCA-T-T-TC---A-GTA-T-A-A-GA-ATG-AATAAAT
gi|15 : ctTCGGCTGGTTCT-AC-A-TTC--T--ATT-GC---A-T-T-ACC-TATCGCA-G-T-AC---A-GTC-T---A-AA-ATG-AATa
gi|3 : ctTCGG-TGGTTCTGAC-ACTTA--TT-ATT-GC---A-TATGACA-TATCG-A-G-TATC---A-GTA-T---A-AG-ATG-AATACATCAT
gi|6 : tTTGG-TGGTTCTGAC-A-TTC--TT-A-T-GCAAAA-T-T-AC--TAC--CA-T-T-TC---A-GTA-T-A-A-GA-AT--AATAAATCATa
gi|2 : ctTCGGCTCGGTCTGAC-A-TTC--TT-ATTTGC---A-C-T-ACCGTATCGCATGCT-TC---A-GTAAT-A-A-AA-A-G-AATAAATCA
gi|1 : ctTCGG-TGGTACTGAGGA-TTC--TT-ATT-GC---A-T-TAACT-AATCGCA-G-T-TC---A-GCA-
gi|14 : ctGG-TGGTTC-GAC-AATTC--CT-AG--GC---A-T-T-ACC-TATTG-A-C-T-TC---A-GTG-T-AGA-AA-ATG-A-TAAATCATagtcggtatatgagaatgattat
gi|12 : G-TGGTTCTGAC-A-TTC--T--ATT-CC---A-T-T-ACC-TATCACA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCA
gi|11 : tcG-TGGT-CTGTC-A-TTC--TTCATT-GC---A-CAT-ACT-TATC-CA-GAT-TC---A-GTA-T-A-A-GATGTG-AATAA
gi|16 : tcttt-TGGTTCTGAC-A-TTC--TT-ACT-GC---A-T-T-ACC-TATCACA-G-T-TC---
gi|13 : TCTGAC-A-GTC--TTGATT-GCC--A-C-T-ACCGTATCGCA-G-T-TC---A-GTA-TAA-A-AA-ATG-AATAAATCAT
Alignments
lowQualScore : 5 2 7 33 5 2 666 5 2 5 2 2 5 2 444 2 2 555 2 2 2
lowQualScore : . . . .. . . ... . . . . . . . ... . . ... . . .
lowQualScore : 3 5 5 44 0 5 999 0 5 0 5 5 0 5 444 7 7 444 9 9 9
consensus : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
Reference ( family-617 ) : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|1 : TCGG-TGGTACTGAGGA-TTC--TT-ATT-GC---AT-T-AAC-TAATCGCA-G-T-TC---A-GCA-
gi|10 : ctTCGG-TG-TTCTGAC-A-TTC--TT-ATT-GC---AT-T-TAC-T-ATCGCA-T-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATagtcggtatatgagaatgattat
gi|11 : ctG-TGGT-CTGTC-A-TTC--TTCATT-GC---ACAT-ACT-T-ATC-CA-GAT-TC---A-GTA-T-A-A-GATGTG-AATAAa
gi|12 : tctttG-TGGTTCTGAC-A-TTC--T--ATT-CC---AT-T-ACC-T-ATCACA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCA
gi|13 : tcTCTGAC-A-GTC--TTGATT-GCC--AC-T-ACCGT-ATCGCA-G-T-TC---A-GTA-TAA-A-AA-ATG-AATAAATCAT
gi|14 : GG-TGGTTC-GAC-AATTC--CT-AG--GC---AT-T-ACC-T-ATTG-A-C-T-TC---A-GTG-T-AGA-AA-ATG-A-TAAATCAT
gi|15 : TCGGCTGGTTCT-AC-A-TTC--T--ATT-GC---AT-T-ACC-T-ATCGCA-G-T-AC---A-GTC-T---A-AA-ATG-AAT
gi|16 : ct-TGGTTCTGAC-A-TTC--TT-ACT-GC---AT-T-ACC-T-ATCACA-G-T-TC---
gi|2 : TCGGCTCGGTCTGAC-A-TTC--TT-ATTTGC---AC-T-ACCGT-ATCGCATGCT-TC---A-GTAAT-A-A-AA-A-G-AATAAATCA
gi|3 : ctTCGG-TGGTTCTGAC-ACTTA--TT-ATT-GC---ATATGACA-T-ATCG-A-G-TATC---A-GTA-T---A-AG-ATG-AATACATCAT
gi|4 : tTCGG-TGGTTCTGAC-ATTTC--TT-ATT-GC---A--T-ACC-T-ATCGCA-G-T-TC---AGGTA-T-A-AGAA-ATGAAATAAATCa
gi|5 : tTTGG-TGGTTCTGAC-A-TTCACTT-ATT-GC---AT-T-AC--T-ATCGCA-G-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATCAT
gi|6 : TTGG-TGGTTCTGAC-A-TTC--TT-A-T-GCAAAAT-T-A-C-T-AC--CA-T-T-TC---A-GTA-T-A-A-GA-AT--AATAAATCAT
gi|7 : ctTCAG-TGTTTCTGAC-A-TTA--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|8 : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACT-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|9 : TCGG-TGGTTTTGAC-A-TTC--TT-ATT-GC---AT-T-ACA-T-ATCGCA-G-T-TCATGA-GT------A-AA-ATG-AATAAATCAT
Alignments
lowQualScore : 5 2 7 33 5 2 666 5 2 5 2 2 5 2 444 2 2 555 2 2 2
lowQualScore : . . . .. . . ... . . . . . . . ... . . ... . . .
lowQualScore : 3 5 5 44 0 5 999 0 5 0 5 5 0 5 444 7 7 444 9 9 9
consensus : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
Reference ( family-617 ) : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|1 : TCGG-TGGTACTGAGGA-TTC--TT-ATT-GC---AT-T-AAC-TAATCGCA-G-T-TC---A-GCA-
gi|10 : ctTCGG-TG-TTCTGAC-A-TTC--TT-ATT-GC---AT-T-TAC-T-ATCGCA-T-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATagtcggtatatgagaatgattat
gi|11 : ctG-TGGT-CTGTC-A-TTC--TTCATT-GC---ACAT-ACT-T-ATC-CA-GAT-TC---A-GTA-T-A-A-GATGTG-AATAAa
gi|12 : tctttG-TGGTTCTGAC-A-TTC--T--ATT-CC---AT-T-ACC-T-ATCACA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCA
gi|13 : tcTCTGAC-A-GTC--TTGATT-GCC--AC-T-ACCGT-ATCGCA-G-T-TC---A-GTA-TAA-A-AA-ATG-AATAAATCAT
gi|14 : GG-TGGTTC-GAC-AATTC--CT-AG--GC---AT-T-ACC-T-ATTG-A-C-T-TC---A-GTG-T-AGA-AA-ATG-A-TAAATCAT
gi|15 : TCGGCTGGTTCT-AC-A-TTC--T--ATT-GC---AT-T-ACC-T-ATCGCA-G-T-AC---A-GTC-T---A-AA-ATG-AAT
gi|16 : ct-TGGTTCTGAC-A-TTC--TT-ACT-GC---AT-T-ACC-T-ATCACA-G-T-TC---
gi|2 : TCGGCTCGGTCTGAC-A-TTC--TT-ATTTGC---AC-T-ACCGT-ATCGCATGCT-TC---A-GTAAT-A-A-AA-A-G-AATAAATCA
gi|3 : ctTCGG-TGGTTCTGAC-ACTTA--TT-ATT-GC---ATATGACA-T-ATCG-A-G-TATC---A-GTA-T---A-AG-ATG-AATACATCAT
gi|4 : tTCGG-TGGTTCTGAC-ATTTC--TT-ATT-GC---A--T-ACC-T-ATCGCA-G-T-TC---AGGTA-T-A-AGAA-ATGAAATAAATCa
gi|5 : tTTGG-TGGTTCTGAC-A-TTCACTT-ATT-GC---AT-T-AC--T-ATCGCA-G-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATCAT
gi|6 : TTGG-TGGTTCTGAC-A-TTC--TT-A-T-GCAAAAT-T-A-C-T-AC--CA-T-T-TC---A-GTA-T-A-A-GA-AT--AATAAATCAT
gi|7 : ctTCAG-TGTTTCTGAC-A-TTA--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|8 : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACT-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|9 : TCGG-TGGTTTTGAC-A-TTC--TT-ATT-GC---AT-T-ACA-T-ATCGCA-G-T-TCATGA-GT------A-AA-ATG-AATAAATCAT
blockSeqs : C . A AC C T AAA A G G . T A A ATG G A AA G T A
blockSeqs : C . C . G . C A . G . . C . . . . AG . . .
blockSeqs : . . T . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
finalCons : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
Alignments
lowQualScore : 5 2 7 33 5 2 666 5 2 5 2 2 5 2 444 2 2 555 2 2 2
lowQualScore : . . . .. . . ... . . . . . . . ... . . ... . . .
lowQualScore : 3 5 5 44 0 5 999 0 5 0 5 5 0 5 444 7 7 444 9 9 9
consensus : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
Reference ( family-617 ) : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|1 : TCGG-TGGTACTGAGGA-TTC--TT-ATT-GC---AT-T-AAC-TAATCGCA-G-T-TC---A-GCA-
gi|10 : ctTCGG-TG-TTCTGAC-A-TTC--TT-ATT-GC---AT-T-TAC-T-ATCGCA-T-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATagtcggtatatgagaatgattat
gi|11 : ctG-TGGT-CTGTC-A-TTC--TTCATT-GC---ACAT-ACT-T-ATC-CA-GAT-TC---A-GTA-T-A-A-GATGTG-AATAAa
gi|12 : tctttG-TGGTTCTGAC-A-TTC--T--ATT-CC---AT-T-ACC-T-ATCACA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCA
gi|13 : tcTCTGAC-A-GTC--TTGATT-GCC--AC-T-ACCGT-ATCGCA-G-T-TC---A-GTA-TAA-A-AA-ATG-AATAAATCAT
gi|14 : GG-TGGTTC-GAC-AATTC--CT-AG--GC---AT-T-ACC-T-ATTG-A-C-T-TC---A-GTG-T-AGA-AA-ATG-A-TAAATCAT
gi|15 : TCGGCTGGTTCT-AC-A-TTC--T--ATT-GC---AT-T-ACC-T-ATCGCA-G-T-AC---A-GTC-T---A-AA-ATG-AAT
gi|16 : ct-TGGTTCTGAC-A-TTC--TT-ACT-GC---AT-T-ACC-T-ATCACA-G-T-TC---
gi|2 : TCGGCTCGGTCTGAC-A-TTC--TT-ATTTGC---AC-T-ACCGT-ATCGCATGCT-TC---A-GTAAT-A-A-AA-A-G-AATAAATCA
gi|3 : ctTCGG-TGGTTCTGAC-ACTTA--TT-ATT-GC---ATATGACA-T-ATCG-A-G-TATC---A-GTA-T---A-AG-ATG-AATACATCAT
gi|4 : tTCGG-TGGTTCTGAC-ATTTC--TT-ATT-GC---A--T-ACC-T-ATCGCA-G-T-TC---AGGTA-T-A-AGAA-ATGAAATAAATCa
gi|5 : tTTGG-TGGTTCTGAC-A-TTCACTT-ATT-GC---AT-T-AC--T-ATCGCA-G-T-TC---A-GTA-T-A-A-GA-ATG-AATAAATCAT
gi|6 : TTGG-TGGTTCTGAC-A-TTC--TT-A-T-GCAAAAT-T-A-C-T-AC--CA-T-T-TC---A-GTA-T-A-A-GA-AT--AATAAATCAT
gi|7 : ctTCAG-TGTTTCTGAC-A-TTA--TT-ATT-GC---AT-T-ACC-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|8 : TCGG-TGGTTCTGAC-A-TTC--TT-ATT-GC---AT-T-ACT-T-ATCGCA-G-T-TC---A-GTA-T-A-A-AA-ATG-AATAAATCAT
gi|9 : TCGG-TGGTTTTGAC-A-TTC--TT-ATT-GC---AT-T-ACA-T-ATCGCA-G-T-TCATGA-GT------A-AA-ATG-AATAAATCAT