lowQualScore : 11111111111111111111111111111 222222222222222 11111111111111111111111111111111111111111111 1111111111111111111 1111111111111111111111111111111111
lowQualScore : 111 6666 11 222222 22 22222 2 666666666666666666666666666666666 4 2 5555555555555 11 111 22 555555555555 555555555 1 2 55 44444444444444444444444444444 4 66666666666666666 1 4 1 555555555555555 4 222 1 4 33 11 555555 2 22 66666 55555555555 22222 11 99999999999 222222 3 00000000000000000000000000000000000000000000 11 3 2 3333333333333333333 1 1 11 11 5555555555555555555555 1 2222222222222222222222222222222222 2
lowQualScore : 8 000 7777 66 11 555555 5 66 5 5 55 666 0 99999 1 0 3 2 0 4 4 999999999999999999999999999999999 0 0 1 7 7 3 7777777777777 99 111 44 2 4 444444444444 6 3 111111111 88 1 3 6 55 77777777777777777777777777777 0 77777777777777777 5 6 0 5 000000000000000 0 333 7 0 6 6 77 99 777777 0 77 22222 4 00000000000 66666 6 88 55555555555 777777 2 7 22222222222222222222222222222222222222222222 33 1 6 8 7 1 0000000000000000000 0 2 1 3 88 88 8888888888888888888888 1 7777777777777777777777777777777777 0
lowQualScore : . ... .... .. .. ...... . .. . . .. ... . ..... . . . . . . . ................................. . . . . . . ............. .. ... .. . . ............ . . ......... .. . . . .. ............................. . ................. . . . . ............... . ... . . . . .. .. ...... . .. ..... . ........... ..... . .. ........... ...... . . ............................................ .. . . . . . ................... . . . . .. .. ...................... . .................................. .
lowQualScore : 0 000 4444 99 99 555555 0 99 0 0 22 444 7 33333 0 8 2 0 8 5 0 888888888888888888888888888888888 7 0 2 7 3 7 7777777777777 22 000 88 5 0 222222222222 0 2 888888888 22 0 3 7 00 55555555555555555555555555555 0 00000000000000000 0 0 0 0 000000000000000 0 000 0 0 0 0 00 55 555555 0 55 55555 0 55555555555 77777 0 33 33333333333 333333 3 3 77777777777777777777777777777777777777777777 88 7 7 7 3 0 7777777777777777777 7 0 0 3 33 33 3333333333333333333333 5 0000000000000000000000000000000000 0
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA--TT--ACA--A-TNA-TTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATGTT-ATTTACATTTTTTT-ATGTAATGGCANGT---TGA---ATTTCTGTATTCAAAACA--T--CTTTAATAAATTTCACCGTAATTTTTAANACTTT-GTGTA---TCACTG-TCAAATATA-TTTT-A-ACA-TGTANCTTTCAT-CGTCCA-AG--TAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCT-AAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TTTCATCTTCGATCAC-ACCANTATATTACAAACATTGCAACGTCTTTGATCC-AATGATGTGGAA---------------TTCTATTG-CAAGTTTATGTGCACTCAATCTAA-TTTTACCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGACTTCTTTTTCTTGTGTATNTTCTCTTTTAAAATAAAATTTCAAGTCGTTTTTTTTNTAACCAAAGGNTTTTNTGGTGTATGAGTTG-C---TCCTGAGTGCA--CTGGTCAG---------TTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GA---ATTT--ATA-TTTTGTAA-TGTTTG------AAAATCCAA--GATTATCT-AGAATA-GAAAATATTTTCCT-----AGTCC-AAGT---ATTGTAGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAGCCANACGTTAATGATNAGATGATTC-CAG-TATCTGAANANTACTTCCGAG-AATGNAAAATTTTGGACACAAA
Reference ( gi|1 ) : AAATA-CAAATA---TTTATTGGCACACACAAACACAA--TT--ACA--A-ACA-TTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTGTTAATTTACATTTTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACACGTC-CTTTGATAAATTTC-CTGTAATTTTTAAAACTTTTGTGTAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-AC--TAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTT-AAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAG--TATTGCACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTA-CTTGTGTATATTTTTT------ATAAAATT-CAAGT--TTTTT---GAAACCAAAAATTTTTT-GATG-----ATTG-C---TCTTGAGTGCA--CTGGTCAAATT--TTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAATTG---GA---ATTTTTATAATTTTGTAA-TGTAT-------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTTCCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAATTG-ATAAT-----CGAGAAATG---AATTTTGGAC-CAAAG
gi|9 : AAATC-CAAA-A---TTTCTTGGCACAAAC--ACAGAATTTT--ACA--A-TAA-TTGGCAATGGCTCGT-CG-AACAT-CA-----CAATAAT-GTTTACATTAATTTTATGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA
gi|12 : acaaatgcaAATAACAAATA---GT-ATTGGCACA----AACACAA--TTA-ACA--A-TAA-TTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTGTCA
gi|6 : cATA-CAAATACTATTTATTGGCACA----AACACAA--TTTTACA--A-TAA-TTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG----TTTACATTTTTTT-ATGTAATAGCATGT---TG----ATTTCTATATTCAAAACA-GT--CTTTGATAAATTTCACTATAATTTTTAAAAC-TTTGTGT-ATATCACTGTTCAAATATATTTTT-A-AC-ATGTAACTT
gi|8 : tacaaattA-CAAATA---TCTATTGGCACA-----ACACAA--TT--CCA--A-TTA-TTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTACTT--ATTTTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACAA-------TAATAAATTTCACCGTAAgggagatgaca
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT--TT--ACA--G-TAA-TTGCCATAAGTCAAG-TG-AACAT-CATTAAACAAT-TTCATATATGTTTT
gi|13 : AAATA---TTTATAGGCAC---CAA-CACAA--TT--ACAGTA-ATA-TTGGCAAAGGCCC------AACAT--ATTTAG
gi|2 : ---TTTATTGGCACA----AACACAA--TT--ACA--ATACA-TTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATGTG----TACATTTT---AATGCAATCGCAAGT-----A---ATTG-------------ACTTCTCTTTAATAAATTTCACTGTAATTTTTAACACTTT-GTGTA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGT-CA-AAAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTT-AAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA--TTCATCTTCGATCAC-ACCAGTATATTACAAACATTACAACATCTTTGATCC-AATGATGTGGAA---------------TTCTATTG-CAAGTTTATGTGCACTCAATCTAA-TTTTACCAAGaatgca
gi|16 : tatACACAA--CT--GCAC-A-ATAATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|7 : acaaattgattgTAAATTTTACAGTAATTTTTCATACTTT-GTATA---------------TATC-CTTT-AGACACC-TATCTTTCAT-CGTCCAGAG--TACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGG-TAGG--TGTTTCGTATCTTATAATAAG
gi|14 : ttaatcATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACAG--TAATATTTTTCTGTG-TT--------ATGTTATAAATATTatttacgtactactttctattgtaagtttatg
gi|3 : -AC--TAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCT-AAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GAAAA--------------TTTCATCTTCAATCAC-ACCAC--T-TT-C---TATTGCAA-GTTTTTG
gi|5 : gTATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATT-CAAGT--TTTTTTTTATAACCAAAGATTTTTTTAATG-----GTTG-C---TCCAGATTGCA--CTAGTC------------TGTTTTATG--TTTGGTAA-AAGGTGTTGAATTG---GACTGATTTTTATA-TTTTGTAA-TTTTTGCCTCGGAAAATCCAA--GATTATCT-AGAATA-GAAAATATTTTCCT-----AGTTC-AAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAG-TATTTG-AAAATACTTCTGAG-AATGA--AATTTTGGAC-tacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : -CTTATATA-ATTTTCT------ATAAAATTTCAAGTCGTTTTT---TTAACCAAAAGATTTTG-GGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGGT-GAATTTTTTGA---ATTT--ATA-TTTTGTAAATGTTTTGG----AAAATCCAAAGGATTATCTGA-AATAGGAAAAT---TTTC--ATGTAGTCC-AAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA--TATCTGAATACT-----CGAG-AATGTAAAATTTTGGACACAAA
gi|3 : TG-C---TCCTGAGTGCA--CTGATCAG---------TTATTC------TTTGGTAAAAGGGTGTTG----------------------ATTTTGTAA-TGTTTG------AAAATCCAA--Gagtggcagtctattacttgctgttagacaccagcat
gi|11 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagta--GATTATCT-AGAATA-GAAAATATTTTCCT-----AGTCC-AAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGAGT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 1111 1111 3333333333 2222 11 1 222222 33 11 11 222 33333333333 11 11 33333333333 1 1 1 111 1111111 2 888888888888888 1 2 333333333333333333333333333333333333 1 4444444444 222 222 111 22222222222222 1 111 11 66666666666666666666 11111 1 1 6666666666666 1 1 444444444 11 1 1 33333 1 111 1 11 11 3333 44444 1 2222 1 444444444 1 33 1
lowQualScore : 5 777 9999 00000 00 1111 4 4 4 2 5 7777 6 0 88 1 1 8888888888 0 11 9999 11 0 4 1 0 222222 2 00 0 33 8 8 8 1 22 111 11111111111 2 33 2 33 66666666666 3 7 2 3 666 8888888 77 0 3 333333333333333 3 0 666666666666666666666666666666666666 5 4 88 0000000000 7 7 999 000 333 99999999999999 0 777 33 88888888888888888888 44444 0 0 3 3 5555555555555 0 0 555555555 11 0 0 3 88888 0 777 6 0 33 33 5555 2 77 1 33333 1 3 1111 2 7 999999999 3 44 5
lowQualScore : . ... .... ..... .. .... . . . . . .... . . .. . . .......... . .. .... .. . . . . ...... . .. . .. . . . . .. ... ........... . .. . .. ........... . . . . ... ....... .. . . ............... . . .................................... . . .. .......... . . ... ... ... .............. . ... .. .................... ..... . . . . ............. . . ......... .. . . . ..... . ... . . .. .. .... . .. . ..... . . .... . . ......... . .. .
lowQualScore : 7 888 4444 44444 66 6666 4 4 4 8 0 7777 7 8 88 4 0 4444444444 8 44 0000 00 8 6 0 0 222222 5 22 2 66 0 0 0 0 00 000 44444444444 5 88 0 22 33333333333 3 3 0 3 000 3333333 33 0 0 333333333333333 3 0 000000000000000000000000000000000000 5 0 33 3333333333 3 3 000 777 777 22222222222222 0 555 88 00000000000000000000 22222 0 0 2 2 2222222222222 0 0 000000000 00 0 0 2 88888 0 555 5 0 88 88 0000 5 99 0 33333 0 3 3333 0 3 333333333 3 00 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAAT--A-ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TT-ATTTACATT-TTTTT-ATGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA---TCTTTAAT--AAATTTCACTGTAATTTTTAANAC-TTTGTG--T---ATCACTGTTCAAATATA-TTTT-A-AC-ATGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAA-TTTCATCTTCGATCAC-ACCAGT-TATTGCA-ACATTGCAACGTCTTTGATCCAAATGANGTGGAA---------------TTCTATTG-CAAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATTCTCTTTT---ATAAAATTTCAAGT--TTTTTTTTG-AACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA-------TT---------GTTTTATG--TTTGGTAA-AAGG-TGTTGAATT----GGA-T----TTTAT-ATTTTGTAA-TGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTCCT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTTA--AAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTGAA-AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAAT--N-ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TT-ATTTACATT-TTTTT-ATGTAATGGCANGT---TGA---ATTTCTGTATTCAAAACA---TCTTTAAT--AAATTTCACCGTAATTTTTAANAC-TTTGTG--T---ATCACTG-TCAAATATA-TTTT-A-AC-ATGTANCTTTCAT-CGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TTTCATCTTCGATCAC-ACCANTATATTACAAACATTGCAACGTCTTTGATCC-AATGATGTGGAA---------------TTCTATTG-CAAGTTTATGTGCACTCAATCTAA-TTTTACCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGACTTCTTTTTCTTGTGTATNTTCTCTTTTAAAATAAAATTTCAAGTCGTTTTTTTTNTAACCAAAGGNTTTTNTGGTGTATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAG-------TT---------GTTTTATG--TTTGGTAA-AAGG-TGTTGAATT----GAA------TTTAT-ATTTTGTAA-TGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTCCT-----AGT-CCAAGT---ATTGTAGTCACTTGTGGATTGGT-AAAG--TTTA--AAAGC----AAGAGCCANACGTTAATGATNAGATGATTC-CAGT--ATCTGAANANTACTTCCGAG-AATGNAAAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAA--C-ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACACGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAA-GTAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAG--TATTGCACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATATT---TTTT---ATAAAA-TTCAAG-----TTTTTTGAAACCAAA-AATTTTTTG----ATGA-T-TG-C---TCTTGAGTGCA--CTGGTCAAATTTTCTTT---------GTTTTATG--TTTGGTAATAAGG-TGTTGAATT----GGAATT---TTTATAATTTTGTAA-TGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTTCCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTTA--AAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG-ATAAT-----CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGT--A-ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TC-ATATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTCCT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTTA--GAAGCCA--AAGAG
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAAT--A-ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TC-At
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAAT-ATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-AC-ATGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAAT--A-ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAAT--ACATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA---ATGCAATCGCAAGT-----A---ATT---GACTTC---------TCTTTAAT--AAATTTCACTGTAATTTTTAACAC-TTTGTG--T---ATCACTAATTAAATATA-TTTTTA-AC-ATGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCAC-ACCAGTATATTACAAACATTACAACATCTTTGATCC-AATGATGTGGAA---------------TTCTATTG-CAAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAA-TTTCATCTTCAATCAC-ACCACTTTCT-------ATTGCAA-GTTTTTG
gi|3 : gac---------------TTCTATTG-CAAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG-------TT---------ATTCT------TTGGTAA-AAGGGTGTTGA-----------------------TTTTGTAA-TGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttCTTATATA-ATTTTCT------ATAAAATTTCAAGTCGTTTTTTT---AACCAAAAGATTTTG-GGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAA-------TTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGG-GGT-GAATTTTTTGAA------TTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT---AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACGT-----ATAAGATGATTC-CA-T--ATCTGAA---TACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : TATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATT-CAAGT--TTTTTTTTATAACCAAAGATTTTTTTAATG-----GT-TG-C---TCCAGATTGCA--CTAGTC----------T---------GTTTTATG--TTTGGTAA-AAGG-TGTTGAATT----GGACTGATTTTTAT-ATTTTGTAA-TTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTCCT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTTA--AAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAA-AATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAAT--A-ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-TT----TACATT-TTTTT-ATGTAATAGCATGT---TG----ATTTCTATATTCAAAACAG--TCTTTGAT--AAATTTCACTATAATTTTTAAAAC-TTTGTGTAT---ATCACTGTTCAAATATATTTTT-A-AC-ATGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATAC-TTTGTA--T---AT------------ATC-CTTT-AGAC-ACCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTG-TT--------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAAT--T-ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTT-ACTT--ATT-TTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACA------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAAT--A-ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-AT-GTTTACATTAATTTT-ATGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA---
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 11 1111 3333333333 33333 11 1 11 111 11 1 222 333333333 11 11 33333333333 1 1 1 444444444444 1 888888888888888 1 1 1 222 222 111 33 2222 11 22222222 1 111 11 77777777777 11111 1 11 555555555555555 1 1 444444444 11 1 1 222222222 1 111 1 11 11 3333 2222 1 2222 1 33 11 1 222 1
lowQualScore : 5 777 9999 00000 00 00 4 4 4 2 5 7777 6 0 88 1 1 8888888888 0 11 22222 11 0 1 0 33 777 2 33 0 33 8 8 8 1 0 111 0 999999999 2 33 2 33 11111111111 7 3 2 3 666666666666 77 5 1 333333333333333 3 5 5 1 333 333 7 7 888 00 2222 00 00000000 0 777 33 66666666666 44444 0 33 222222222222222 0 0 555555555 11 0 0 3 999999999 0 777 6 0 33 33 5555 2 3 7 8888 1 3 1111 2 00 88 3 555 5
lowQualScore : . ... .... ..... .. .. . . . . . .... . . .. . . .......... . .. ..... .. . . . .. ... . .. . .. . . . . . ... . ......... . .. . .. ........... . . . . ............ .. . . ............... . . . . ... ... . . ... .. .... .. ........ . ... .. ........... ..... . .. ............... . . ......... .. . . . ......... . ... . . .. .. .... . . . .... . . .... . .. .. . ... .
lowQualScore : 7 888 4444 44444 66 66 4 4 4 8 0 7777 7 8 88 4 4 4444444444 8 44 55555 00 8 0 0 88 555 5 88 2 66 0 0 0 4 0 000 8 666666666 5 88 0 22 77777777777 3 3 0 3 000000000000 33 5 0 333333333333333 3 5 5 0 000 333 3 3 333 33 7777 33 55555555 0 555 88 55555555555 22222 0 22 888888888888888 0 0 000000000 00 0 0 2 888888888 0 555 5 0 88 88 0000 5 7 3 3333 0 3 3333 0 77 33 3 777 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTTTA---TAAAATTTCAAGTC-TTTTTTN-AACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA-TTC-CT--TTGTTTTATG--TTTGGTAA-AAGG-TGTTGAA---TTGGA-T---TTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATTCTCTTTTA---TAAAATTTCAAGTTTTTTTTTG-AACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA---------TTGTTTTATG--TTTGGTAA-AAGG-TGTTGAA---TTGGA-----TTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTGAAAATACT--CGAG-AATG--AAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAAC--ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACA-CGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAGT--ATTGC-ACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATATT---TTTTA---TAAAA-TTCAAG---TTTTTTGAAACCAAA-AATTTTTTGATG-A----T-TG-C---TCTTGAGTGCA--CTGGTCAAATTTTCT--TTGTTTTATG--TTTGGTAATAAGG-TGTTGAA---TTGGAAT---TTTTATAATTTTGT-AATGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTT--CCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG---ATAAT--CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGTA--ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TCA-TATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGA
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAATA--ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TCA-gt
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAATATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAATA--ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAATAC-ATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA--A-TGCAATCGCAAGT-----A---ATT---GACTTC-------T---CTTTAAT--AAATTTCACTGTAATTTTTAACACTTT-GTG--TA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCACA-CCAGTATATTACAA-ACATTACAACATCTTTGATCC-AATGATGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAATTT-CATCTTCAATCACA-CCACT-TTCT-------ATTGCAA-GTTTTTG
gi|3 : gacTT---------------CTATTGC-AAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG---------TTATTCT------TTGGTAA-AAGGGTGTTGA----------------------TTTTGT-AATGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttTATATAATTTTCTA---TAAAATTTCAAGTCGTTTTTTT-AACCAAAAGA-TTTTGGGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGG--GGTGAATTTTTTGA-----ATTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT-----AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA-T--ATCTG--AATACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : ctTATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATT-CAAGTTTTTTTTTATAACCAAAGA-TTTTTT--TA-ATG-GT-TG-C---TCCAGATTGCA--CTAGTC------------TGTTTTATG--TTTGGTAA-AAGG-TGTTGAA---TTGGACTGATTTTTAT-ATTTTGT-AATTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAAAATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAATA--ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-TT----TACATT-TTTTTA-TGTAATAGCATGT---TG----ATTTCTATATTCAAAACAGT---CTTTGAT--AAATTTCACTATAATTTTTAAAACTTT-GTGTATA---TCACTGTTCAAATATATTTTT-A-ACA-TGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATACTTT-GTA--TA---T------------ATC-CTTT-AGACA-CCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAATT--ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTA-CTT--ATT-TTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACA-------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAATA--ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-ATG-TTTACATTAATTTTA-TGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 11 1111 3333333333 33333 11 1 11 111 11 1 222 333333333 11 11 33333333333 1 1 1 444444444444 1 888888888888888 1 1 1 222 2222 22 11 2222 11 22222222 1 111 11 6666666666666 111 1 1 555555555555555555 1 1 444444444 11 1 1 222222222 1 111 1 11 11 3333 2222 1 2222 1 222 11 1 222 1
lowQualScore : 5 777 9999 00000 00 00 4 4 4 2 5 7777 6 0 88 1 1 8888888888 0 11 22222 11 0 1 0 33 777 2 33 0 33 8 8 8 1 0 111 0 999999999 2 33 2 33 11111111111 7 3 2 3 666666666666 77 5 1 333333333333333 3 5 5 1 888 8888 7 7 55 1 88 2222 00 00000000 0 777 33 7777777777777 3 444 0 0 3 222222222222222222 0 0 555555555 11 0 0 3 999999999 0 777 6 0 33 33 5555 2 3 7 8888 1 3 1111 2 555 88 3 555 5
lowQualScore : . ... .... ..... .. .. . . . . . .... . . .. . . .......... . .. ..... .. . . . .. ... . .. . .. . . . . . ... . ......... . .. . .. ........... . . . . ............ .. . . ............... . . . . ... .... . . .. . .. .... .. ........ . ... .. ............. . ... . . . .................. . . ......... .. . . . ......... . ... . . .. .. .... . . . .... . . .... . ... .. . ... .
lowQualScore : 7 888 4444 44444 66 66 4 4 4 8 0 7777 7 8 88 4 4 4444444444 8 44 55555 00 8 0 0 88 555 5 88 2 66 0 0 0 4 0 000 8 666666666 5 88 0 22 77777777777 3 3 0 3 000000000000 33 5 0 333333333333333 3 5 5 0 333 3333 3 3 33 0 33 7777 33 55555555 0 555 88 2222222222222 2 000 0 0 2 555555555555555555 0 0 000000000 00 0 0 2 888888888 0 555 5 0 88 88 0000 5 7 3 3333 0 3 3333 0 777 33 3 777 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATAT--TTTTTT----ATAAAATTTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTTT----ATAAAATTTCAAGTC-TTTTTTNA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TCCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAAC--ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACA-CGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAGT--ATTGC-ACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATA---TTTTTT----ATAAAA-TTCAAGT--TTTTTGAA--ACCAAA-AATTTTTTGATG-A----T-TG-C---TCTTGAGTGCA--CTGGTCAAATT----TTCTTTGTTTTATG--TTTGGTAATAA-GGTGTTGAA----TTGGAA----TTTTTATAATTTTGT-AATGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTT--CCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG---ATAAT--CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGTA--ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TCA-TATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGA
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAATA--ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TCA-gt
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAATATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAATA--ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAATAC-ATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA--A-TGCAATCGCAAGT-----A---ATT---GACTTC-------T---CTTTAAT--AAATTTCACTGTAATTTTTAACACTTT-GTG--TA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCACA-CCAGTATATTACAA-ACATTACAACATCTTTGATCC-AATGATGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAATTT-CATCTTCAATCACA-CCACT-TTCT-------ATTGCAA-GTTTTTG
gi|3 : gacTT---------------CTATTGC-AAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG-----------TTATTC------TTTGGTAA-AAGGGTGTTG------------------------ATTTTGT-AATGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttTATATAATTTTCT----ATAAAATTTCAAGTCGTTTTTTTA--ACCAAAAGA-TTTTGGGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAA--TTTCATTCTTTGTTTTATAGTTTTGGTAA-AA-GG-GGTGAATTTTTTGA-A------TTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT-----AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA-T--ATCTG--AATACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : ctTATGGACTTCTTTTTCTTGTGTATTTT-CTTTTTTAAAATAAAATT-CAAGTT-TTTTTTTATAACCAAAGA-TTTTTT--TA-ATG-GT-TG-C---TCCAGATTGCA--CTAGTC--------------TGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-ACTGATTTTTAT-ATTTTGT-AATTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAAAATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAATA--ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-TT----TACATT-TTTTTA-TGTAATAGCATGT---TG----ATTTCTATATTCAAAACAGT---CTTTGAT--AAATTTCACTATAATTTTTAAAACTTT-GTGTATA---TCACTGTTCAAATATATTTTT-A-ACA-TGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATACTTT-GTA--TA---T------------ATC-CTTT-AGACA-CCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAATT--ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTA-CTT--ATT-TTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACA-------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAATA--ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-ATG-TTTACATTAATTTTA-TGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 11 1111 3333333333 33333 11 1 11 111 11 1 222 333333333 11 11 33333333333 1 1 1 444444444444 1 888888888888888 1 1 1 1 33333 22 11 2222 11 22222222 1 111 11 5555555555555 111 1 1 555555555555555555 1 1 444444444 11 1 1 222222222 1 111 1 11 11 3333 2222 1 2222 1 222 11 1 222 1
lowQualScore : 5 777 9999 00000 00 00 4 4 4 2 5 7777 6 0 88 1 1 8888888888 0 11 22222 11 0 1 0 33 777 2 33 0 33 8 8 8 1 0 111 0 999999999 2 33 2 33 11111111111 7 3 2 3 666666666666 77 5 1 333333333333333 3 5 5 1 6 55555 55 88 2222 00 00000000 0 777 33 9999999999999 3 444 0 0 3 222222222222222222 0 0 555555555 11 0 0 3 999999999 0 777 6 0 33 33 5555 2 3 7 8888 1 3 1111 2 555 88 3 555 5
lowQualScore : . ... .... ..... .. .. . . . . . .... . . .. . . .......... . .. ..... .. . . . .. ... . .. . .. . . . . . ... . ......... . .. . .. ........... . . . . ............ .. . . ............... . . . . . ..... .. .. .... .. ........ . ... .. ............. . ... . . . .................. . . ......... .. . . . ......... . ... . . .. .. .... . . . .... . . .... . ... .. . ... .
lowQualScore : 7 888 4444 44444 66 66 4 4 4 8 0 7777 7 8 88 4 4 4444444444 8 44 55555 00 8 0 0 88 555 5 88 2 66 0 0 0 4 0 000 8 666666666 5 88 0 22 77777777777 3 3 0 3 000000000000 33 5 0 333333333333333 3 5 5 0 0 77777 33 33 7777 33 55555555 0 555 88 8888888888888 2 000 0 0 2 555555555555555555 0 0 000000000 00 0 0 2 888888888 0 555 5 0 88 88 0000 5 7 3 3333 0 3 3333 0 777 33 3 777 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATA-TTTTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATTTTTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAAC--ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACA-CGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAGT--ATTGC-ACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATA-TTTTTTATAAAA-----TTCAAGT--TTTTTGAA--ACCAAA-AATTTTTTGATG-A----T-TG-C---TCTTGAGTGCA--CTGGTCAAATT----TTCTTTGTTTTATG--TTTGGTAATAA-GGTGTTGAA----TTGGAA----TTTTTATAATTTTGT-AATGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTT--CCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG---ATAAT--CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGTA--ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TCA-TATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGA
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAATA--ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TCA-gt
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAATATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAATA--ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAATAC-ATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA--A-TGCAATCGCAAGT-----A---ATT---GACTTC-------T---CTTTAAT--AAATTTCACTGTAATTTTTAACACTTT-GTG--TA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCACA-CCAGTATATTACAA-ACATTACAACATCTTTGATCC-AATGATGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAATTT-CATCTTCAATCACA-CCACT-TTCT-------ATTGCAA-GTTTTTG
gi|3 : gacTT---------------CTATTGC-AAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG-----------TTATTC------TTTGGTAA-AAGGGTGTTG------------------------ATTTTGT-AATGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttTATATAATTTTCTATAAAAT----TTCAAGTCGTTTTTTTA--ACCAAAAGA-TTTTGGGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAA--TTTCATTCTTTGTTTTATAGTTTTGGTAA-AA-GG-GGTGAATTTTTTGA-A------TTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT-----AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA-T--ATCTG--AATACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : ctTATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATTCAAGTT-TTTTTTTATAACCAAAGA-TTTTTT--TA-ATG-GT-TG-C---TCCAGATTGCA--CTAGTC--------------TGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-ACTGATTTTTAT-ATTTTGT-AATTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAAAATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAATA--ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-TT----TACATT-TTTTTA-TGTAATAGCATGT---TG----ATTTCTATATTCAAAACAGT---CTTTGAT--AAATTTCACTATAATTTTTAAAACTTT-GTGTATA---TCACTGTTCAAATATATTTTT-A-ACA-TGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATACTTT-GTA--TA---T------------ATC-CTTT-AGACA-CCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAATT--ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTA-CTT--ATT-TTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACA-------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAATA--ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-ATG-TTTACATTAATTTTA-TGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 11 1111 3333333333 33333 11 1 11 111 11 1 222 333333333 11 11 33333333333 1 1 1 444444444444 1 888888888888888 1 1 1 1 33333 22 11 2222 11 22222222 1 111 11 5555555555555 111 1 1 555555555555555555 1 1 444444444 11 1 1 222222222 1 111 1 11 11 3333 2222 1 2222 1 222 11 1 222 1
lowQualScore : 5 777 9999 00000 00 00 4 4 4 2 5 7777 6 0 88 1 1 8888888888 0 11 22222 11 0 1 0 33 777 2 33 0 33 8 8 8 1 0 111 0 999999999 2 33 2 33 11111111111 7 3 2 3 666666666666 77 5 1 333333333333333 3 5 5 1 7 3 55555 55 88 2222 00 00000000 0 777 33 9999999999999 3 444 0 0 3 222222222222222222 0 0 555555555 11 0 0 3 999999999 0 777 6 0 33 33 5555 2 3 7 8888 1 3 1111 2 555 88 3 555 5
lowQualScore : . ... .... ..... .. .. . . . . . .... . . .. . . .......... . .. ..... .. . . . .. ... . .. . .. . . . . . ... . ......... . .. . .. ........... . . . . ............ .. . . ............... . . . . . . ..... .. .. .... .. ........ . ... .. ............. . ... . . . .................. . . ......... .. . . . ......... . ... . . .. .. .... . . . .... . . .... . ... .. . ... .
lowQualScore : 7 888 4444 44444 66 66 4 4 4 8 0 7777 7 8 88 4 4 4444444444 8 44 55555 00 8 0 0 88 555 5 88 2 66 0 0 0 4 0 000 8 666666666 5 88 0 22 77777777777 3 3 0 3 000000000000 33 5 0 333333333333333 3 5 5 0 3 3 77777 33 33 7777 33 55555555 0 555 88 8888888888888 2 000 0 0 2 555555555555555555 0 0 000000000 00 0 0 2 888888888 0 555 5 0 88 88 0000 5 7 3 3333 0 3 3333 0 777 33 3 777 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAAC--ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACA-CGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAGT--ATTGC-ACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATATT-TTTTATAAAA-----TTCAAGT--TTTTTGAA--ACCAAA-AATTTTTTGATG-A----T-TG-C---TCTTGAGTGCA--CTGGTCAAATT----TTCTTTGTTTTATG--TTTGGTAATAA-GGTGTTGAA----TTGGAA----TTTTTATAATTTTGT-AATGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTT--CCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG---ATAAT--CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGTA--ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TCA-TATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGA
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAATA--ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TCA-gt
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAATATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAATA--ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAATAC-ATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA--A-TGCAATCGCAAGT-----A---ATT---GACTTC-------T---CTTTAAT--AAATTTCACTGTAATTTTTAACACTTT-GTG--TA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCACA-CCAGTATATTACAA-ACATTACAACATCTTTGATCC-AATGATGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAATTT-CATCTTCAATCACA-CCACT-TTCT-------ATTGCAA-GTTTTTG
gi|3 : gacTT---------------CTATTGC-AAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG-----------TTATTC------TTTGGTAA-AAGGGTGTTG------------------------ATTTTGT-AATGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttCTTATATA-ATT-TTCTATAAAAT----TTCAAGTCGTTTTTTTA--ACCAAAAGA-TTTTGGGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAA--TTTCATTCTTTGTTTTATAGTTTTGGTAA-AA-GG-GGTGAATTTTTTGA-A------TTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT-----AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA-T--ATCTG--AATACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : TATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATTCAAGTT-TTTTTTTATAACCAAAGA-TTTTTT--TA-ATG-GT-TG-C---TCCAGATTGCA--CTAGTC--------------TGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-ACTGATTTTTAT-ATTTTGT-AATTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAAAATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAATA--ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-TT----TACATT-TTTTTA-TGTAATAGCATGT---TG----ATTTCTATATTCAAAACAGT---CTTTGAT--AAATTTCACTATAATTTTTAAAACTTT-GTGTATA---TCACTGTTCAAATATATTTTT-A-ACA-TGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATACTTT-GTA--TA---T------------ATC-CTTT-AGACA-CCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAATT--ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTA-CTT--ATT-TTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACA-------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAATA--ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-ATG-TTTACATTAATTTTA-TGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 11 1111 3333333333 33333 11 1 11 111 11 1 222 333333333 11 11 33333333333 1 1 1 444444444444 1 888888888888888 1 1 1 1 33333 22 11 2222 11 22222222 1 111 11 5555555555555 111 1 1 555555555555555555 1 1 444444444 11 1 1 222222222 1 111 1 11 11 3333 2222 1 2222 1 222 11 1 222 1
lowQualScore : 5 777 9999 00000 00 00 4 4 4 2 5 7777 6 0 88 1 1 8888888888 0 11 22222 11 0 1 0 33 777 2 33 0 33 8 8 8 1 0 111 0 999999999 2 33 2 33 11111111111 7 3 2 3 666666666666 77 5 1 333333333333333 3 5 5 1 7 3 55555 55 88 2222 00 00000000 0 777 33 9999999999999 3 444 0 0 3 222222222222222222 0 0 555555555 11 0 0 3 999999999 0 777 6 0 33 33 5555 2 3 7 8888 1 3 1111 2 555 88 3 555 5
lowQualScore : . ... .... ..... .. .. . . . . . .... . . .. . . .......... . .. ..... .. . . . .. ... . .. . .. . . . . . ... . ......... . .. . .. ........... . . . . ............ .. . . ............... . . . . . . ..... .. .. .... .. ........ . ... .. ............. . ... . . . .................. . . ......... .. . . . ......... . ... . . .. .. .... . . . .... . . .... . ... .. . ... .
lowQualScore : 7 888 4444 44444 66 66 4 4 4 8 0 7777 7 8 88 4 4 4444444444 8 44 55555 00 8 0 0 88 555 5 88 2 66 0 0 0 4 0 000 8 666666666 5 88 0 22 77777777777 3 3 0 3 000000000000 33 5 0 333333333333333 3 5 5 0 3 3 77777 33 33 7777 33 55555555 0 555 88 8888888888888 2 000 0 0 2 555555555555555555 0 0 000000000 00 0 0 2 888888888 0 555 5 0 88 88 0000 5 7 3 3333 0 3 3333 0 777 33 3 777 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAAC--ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGT---TGA---ATTTCTATATTCACAACA-CGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAGT--ATTGC-ACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATATT-TTTTATAAAA-----TTCAAGT--TTTTTGAA--ACCAAA-AATTTTTTGATG-A----T-TG-C---TCTTGAGTGCA--CTGGTCAAATT----TTCTTTGTTTTATG--TTTGGTAATAA-GGTGTTGAA----TTGGAA----TTTTTATAATTTTGT-AATGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTT--CCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG---ATAAT--CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGTA--ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TCA-TATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGA
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAATA--ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TCA-gt
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAATATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAATA--ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAATAC-ATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA--A-TGCAATCGCAAGT-----A---ATT---GACTTC-------T---CTTTAAT--AAATTTCACTGTAATTTTTAACACTTT-GTG--TA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCACA-CCAGTATATTACAA-ACATTACAACATCTTTGATCC-AATGATGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAATTT-CATCTTCAATCACA-CCACT-TTCT-------ATTGCAA-GTTTTTG
gi|3 : gacTT---------------CTATTGC-AAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG-----------TTATTC------TTTGGTAA-AAGGGTGTTG------------------------ATTTTGT-AATGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttCTTATATA-ATT-TTCTATAAAAT----TTCAAGTCGTTTTTTTA--ACCAAAAGA-TTTTGGGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAA--TTTCATTCTTTGTTTTATAGTTTTGGTAA-AA-GG-GGTGAATTTTTTGA-A------TTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT-----AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA-T--ATCTG--AATACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : TATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATTCAAGTT-TTTTTTTATAACCAAAGA-TTTTTT--TA-ATG-GT-TG-C---TCCAGATTGCA--CTAGTC--------------TGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-ACTGATTTTTAT-ATTTTGT-AATTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAAAATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAATA--ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-TT----TACATT-TTTTTA-TGTAATAGCATGT---TG----ATTTCTATATTCAAAACAGT---CTTTGAT--AAATTTCACTATAATTTTTAAAACTTT-GTGTATA---TCACTGTTCAAATATATTTTT-A-ACA-TGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATACTTT-GTA--TA---T------------ATC-CTTT-AGACA-CCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAATT--ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTA-CTT--ATT-TTTTT------ATGGCATGTAGCTG----ATTTCTGTATTCAAAACA-------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAATA--ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-ATG-TTTACATTAATTTTA-TGTAGCGGCAAG----TAACTTACTTCTGTATTCAAAACA-
blockSeqs : A CTA . GAATT TT AT G A G A T ATA A A C A TAGCTG AA GT CT C . TA . C AA AT T G . T . CA TTGTTATAA G . A TT AAAAGAAAAAT T . G . ATATTACAAAC CA . T . . . T T T C TAAAA CG TA AGA GG TATGAAT A GGA AG AATTTCATTCT T AGT . G T AATTGGACTGATT . A GCCTCGG AG . . T ATGT . . T A AT AG GCCA G C T AATG A . GT C AAA TC . TAA A
blockSeqs : . . . T A C . . . T . ACT . A A T TAACTT AA T . A . . . C GT A . . . A . AA T G . A TT . . . A . TTCT G . . . . T T . GAT . ATGGT . . . AG T G . . T AATTTTTTGAA . . TGG . . . T CT . . C . . . CA G . . . C . T T A . . A
blockSeqs : . . . A . . . . . T . GTT . A G T TTG AA . . T . . . . . C . . . A . GA . G . G . . . . . . . . . . . . . G . . . . CT . . . . . . . .
blockSeqs : . . . A . . . . . A . . . . G A TA . . . . . . T . .
blockSeqs : . . . A . . . . . T . . .
blockSeqs : . . . A . . . . . A .
blockSeqs : . . A . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : **** ATT* A* TAT******* T********
originalCons : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT---TGA---ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
finalCons : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTATT-TACATT-TTTTTA-TGTAATGGCATGTAT-------ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA
Alignments
lowQualScore : 11111 11 11 11111 55555555 33333 11 1 11 111 11 1 222 333333333 11 11 33333333333 1 1 1 444444444444 1 888888888888888 1 1 1 1 33333 22 11 2222 11 22222222 1 111 11 5555555555555 111 1 1 555555555555555555 1 1 444444444 11 1 1 222222222 1 111 1 11 11 3333 2222 1 2222 1 222 11 1 222 1
lowQualScore : 5 777 9999 00000 00 00 4 4 4 2 88888 6 0 88 1 1 55555555 0 11 22222 11 0 1 0 33 777 2 33 0 33 8 8 8 1 0 111 0 999999999 2 33 2 33 11111111111 7 3 2 3 666666666666 77 5 1 333333333333333 3 5 5 1 7 3 55555 55 88 2222 00 00000000 0 777 33 9999999999999 3 444 0 0 3 222222222222222222 0 0 555555555 11 0 0 3 999999999 0 777 6 0 33 33 5555 2 3 7 8888 1 3 1111 2 555 88 3 555 5
lowQualScore : . ... .... ..... .. .. . . . . ..... . . .. . . ........ . .. ..... .. . . . .. ... . .. . .. . . . . . ... . ......... . .. . .. ........... . . . . ............ .. . . ............... . . . . . . ..... .. .. .... .. ........ . ... .. ............. . ... . . . .................. . . ......... .. . . . ......... . ... . . .. .. .... . . . .... . . .... . ... .. . ... .
lowQualScore : 7 888 4444 44444 66 66 4 4 4 8 11111 7 8 88 4 4 66666666 8 44 55555 00 8 0 0 88 555 5 88 2 66 0 0 0 4 0 000 8 666666666 5 88 0 22 77777777777 3 3 0 3 000000000000 33 5 0 333333333333333 3 5 5 0 3 3 77777 33 33 7777 33 55555555 0 555 88 8888888888888 2 000 0 0 2 555555555555555555 0 0 000000000 00 0 0 2 888888888 0 555 5 0 88 88 0000 5 7 3 3333 0 3 3333 0 777 33 3 777 5
consensus : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT--A-C-T-ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
Reference ( family-6145 ) : AAATA-CAAATA---TTTATTGGCACA----AACACAA----TT--ACAATA--ATTGGCAAAGGCCCAT-TG-AACAT-CATTNGGCAATG-TTA-TTTACATT-TTTTTA-TGTAATGGCATGT--A---T-ATTTCTGTATTCAAAACA-T---CTTTAAT--AAATTTCACTGTAATTTTTAANACTTT-GTG--TA---TCACTGTTCAAATATA-TTTT-A-ACA-TGTAACTTTCAT-TGTCCA-A-GTAATATTTTTCTGTGTTT--------ATGTTATAAATGTTTCTAAGGTAGG--CGTTTCTTAGCTTAGAATAAGATTTACAATGAAAAAGGGAA--TGAAATTT-CATCTTCGATCACA-CCAGT-TATTGC-A-ACATTGCAACGTCTTTGATCCAAATGANGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAATTTTTGCCAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTCTTTTNCTTGTGTATATT-TTTTATAAAAT----TTCAAGTC-TTTTTTTA--ACCAAAGAATTTTTTGGTG-ATGAGT-TG-C---TCCTGAGTGCA--CTGGTCAA--T----TTCTTTGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-A----TTTTTAT-ATTTTGT-AATGTTT--G------AAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGC---ATTGTGGTCACTTGTGGATTGGT-AAAG--TTT--AAAAGC----AAGAACCAGACGTT----ATNAGATGATTC-CAGT--ATCTG--AATACT--CGAG-AATG--AAATTTTGGACACAAA
gi|1 : AAATA-CAAATA---TTTATTGGCACACACAAACACAA----TT--ACAAAC--ATTGCAAAAGGCCCAT-TG-AACAT-CATTTGGCAGTG-TTAATTTACATT-TTTTTAATGTAATAGCATGTTGA-----ATTTCTATATTCACAACA-CGTCCTTTGAT--AAATTTC-CTGTAATTTTTAAAACTTTTGTG--TAACATCACTGTTCAAATATA-TTTT-A-ACAATGTAACTTTCATGTGTTCA-A-CTAATATTTCTCTGTGTTT--------ATGTTATAAACATTTTTAAG-TAGGGCCATTTCTTAGCTTAGAATAAGGAATACAATGAAAAAAGGAA--TGAAATTTTCATCTTC-ATCACAACCAGT--ATTGC-ACATATTGCAACATCTTTGATTCAAATGAGGTGGAATTTATTATCTACCACTTCTATTGCCAACTATATGAGCACTCAATCTAATTTTTGCTAAGAGAGGATCTCTCGCATTTTTTTCTGAGTAATCAACATATGGACTTC-TTTACTTGTGTATATT-TTTTATAAAA-----TTCAAGT--TTTTTGAA--ACCAAA-AATTTTTTGATG-A----T-TG-C---TCTTGAGTGCA--CTGGTCAAATT----TTCTTTGTTTTATG--TTTGGTAATAA-GGTGTTGAA----TTGGAA----TTTTTATAATTTTGT-AATGTAT---------AAAATCCAA--GATTATCTTAGAATAAGAAAATATTTTT--CCCATAAAGTCCCAAGCCCAATTGTGGTCACTTGTGGATTGAT-AAAG--TTT--AAAAGC----AAGAATCAGACGTT----ATTAGATGATTCGCAATTAAT-TG---ATAAT--CGAGAAATG---AATTTTGGAC-CAAA
gi|10 : A-CAAATA---TTTTTTGGCACA----AACACAT----TT--ACAGTA--ATTGCCATAAGTCAAG-TG-AACAT-CATTAAACAATT-TCA-TATATGTT-TTg
gi|11 : --GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-CCAAGT---ATTGTAATCATATTTGGATTGGTAAAAA--TTT--AGAAGCCA--AAGA
gi|12 : AATAACAAATA---GT-ATTGGCACA----AACACAA----TTA-ACAATA--ATTGGCAAAGGCCGATGTGAAACATGTATTTGGCAGTG-TCA-gt
gi|13 : cAAATA---TTTATAGGCACC----AACACAA----TT--ACAGTAATATTGGCAAAGGCCC------AACAT--ATTTAG-AATG-
gi|14 : ATAT--TTTT-A-ACA-TGTATCTTTAAT-TATCCACA-GTAATATTTTTCTGTG-TT--------ATGTTATAAATATTca
gi|16 : A-CAAAT-----TGATTGACACA----ACTGCA----------CAATA--ATTGGCAAAGGCCCAT-TG-AACGT-CA
gi|2 : ---TTTATTGGCACA----AACACAA----TT--ACAATAC-ATTGGCAAAGGCCCAT-TA-ACCAA-TATTAAACAATG-TG----TACATT-TTA--A-TGCAATCGCAAGT--A-----ATT---GACTTC-------T---CTTTAAT--AAATTTCACTGTAATTTTTAACACTTT-GTG--TA---TCACTAATTAAATATA-TTTTTA-ACA-TGTAAATTTCAT-TGTCAA-AAGTAATATATTTCTGTGTTTTGTTATAAATATTATAAATGTTTTTAAGGTAGA--CATTTCTTAGTTTAGAATAAGATTTACAATGAAAAAGAAAAATTGAAA-TT-CATCTTCGATCACA-CCAGTATATTACAA-ACATTACAACATCTTTGATCC-AATGATGTGGAATT---------------CTATTGC-AAGTTTATGTGCACTCAATCTAA-TTTTACCAAG
gi|3 : tatTAATATTTTTCTGTGTT---------ATGTTTTAAATGTTTCTAAGGTAGG--CATTTCTTGGCTTAGAATAAGA--------GA-------------AAATTT-CATCTTCAATCACA-CCACT-TTCT-------ATTGCAA-GTTTTTG
gi|3 : gacTT---------------CTATTGC-AAGTTTTTGTACACTCtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|3 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactAGTATG-C---TCCTGAGTGCA--CTGATCAG-----------TTATTC------TTTGGTAA-AAGGGTGTTG------------------------ATTTTGT-AATGTTT--G------AAAATCCAA--Ggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttagtatgctcctgagtgcactgatcagttattctttggtaaaagggtgttgattttgtaatgtttgaaaatccaag
gi|4 : gactaatatttttctgtgttatgttttaaatgtttctaaggtaggcatttcttggcttagaataagagaaaatttcatcttcaatcacaccactttctattgcaagtttttgtacactcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttCTTATATA-ATT-TTCTATAAAAT----TTCAAGTCGTTTTTTTA--ACCAAAAGA-TTTTGGGTGTATGAAT-TGACGGATCCTGAGTGCAAGTTGGTCAA--TTTCATTCTTTGTTTTATAGTTTTGGTAA-AA-GG-GGTGAATTTTTTGA-A------TTTAT-ATTTTGTAAATGTTTTGG------AAAATCCAAAGGATTATC-TGAAAT-AGGAAA-ATTTTCATGT-----AGT-CCAAGC---ATTTCGGTCA-TTGTGGATTGAT-AAAG--TTTAGAAAAGC----AA-----AGACG-T----ATAAGATGATTC-CA-T--ATCTG--AATACT--CGAG-AATGTAAAATTTTGGACACAAA
gi|5 : TATGGACTTCTTTTTCTTGTGTATTTTCTTTTTTAAAATAAAATTCAAGTT-TTTTTTTATAACCAAAGA-TTTTTT--TA-ATG-GT-TG-C---TCCAGATTGCA--CTAGTC--------------TGTTTTATG--TTTGGTAA-AA-GGTGTTGAA----TTGG-ACTGATTTTTAT-ATTTTGT-AATTTTT--GCCTCGGAAAATCCAA--GATTATC-TAGAAT-AGAAAATATTTTC--CT-----AGT-TCAAGT---ATTGTAGTCACTTGTGGATAGGT-AAAGATTTT--AAAAACGCCAAAGAACCATACGTTAATGATCAGATGATTC-CAGT--ATTTGAAAATACTTCTGAG-AATG--AAATTTTGGACagtggcagtctattacttgctgttagacaccagcat
gi|6 : ATA-CAAATACTATTTATTGGCACA----AACACAA----TTTTACAATA--ATTGGCAAAGGCCCAC-TG-AACAT-CATTTGGCAGTG-----TTTACATT-TTTTTA-TGTAATAGCATGT--T---G-ATTTCTATATTCAAAACAGT---CTTTGAT--AAATTTCACTATAATTTTTAAAACTTT-GTGTATA---TCACTGTTCAAATATATTTTT-A-ACA-TGTAACTTc
gi|7 : tacaaattTTAATCTAAATTTTACAGTAATTTTTCATACTTT-GTA--TA---T------------ATC-CTTT-AGACA-CCTATCTTTCAT-CGTCCAGA-GTACTACTTTTCTGTGTT---------ATGTTATACATGTTTCTGGGGTAGG--TGTTTCGTATCTTATAATAAGATTTACgggagatgaca
gi|8 : A-CAAATA---TCTATTGGCACA----A-CACAA----TT--CCAATT--ATTGGCAAAGGCCCAT-TG-AACAT-CATTAGACAATGTTTA-CTT--ATT-TTTTT------ATGGCATGT--AGC-TGATTTCTGTATTCAAAACA-------ATAAT--AAATTTCACCGTAAgtactactttctattgtaagtttatg
gi|9 : AAATC-CAAA-A---TTTCTTGGCACA----AACACAGAATTTT--ACAATA--ATTGGCAATGGCTCGT-CG-AACAT-CA-----CAATA-ATG-TTTACATTAATTTTA-TGTAGCGGCAAGT--AACTT-ACTTCTGTATTCAAAACA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGAGTGAAATTTTGGACCAGAGTGGCAGTCTATTAAGTTCTGCTAGACAATCA
Unaligned ( gi|17 ): ATATATGTGTGCGAGATGGTGGAATATACAAA