lowQualScore : 11 1 1 6666666666666 11 1 1 111111 1 22222222 777777777777777777777 222 1111 111111111 111 111 4 1111 111 1 3 11 22 22222222222 1 22 1 3 222 3 2 1 1 111111111111111 11111111 444444444444444444444 111 1111 111 111 111 11 1 1111 111 222 44444444 111111 22222222 2222
lowQualScore : 6 11 1 0 88 8 0 1111111111111 6 33 5 1 6 6 0 888 1 4 222222 2 4 8 4 66666666 6 555555555555555555555 4 333 3 3 99999 1 5555 777777777 66 44 333 3 3 333 0 6 6 4444 111 5 3 22 3 22 5 44444444444 5 5 3 5 5 1 6 66 0 2 00 1 5 5 5 0 555 55 5 6 5 5 5 2 1 5 5 5 5 777 3 4 4 4 888888888 5 5 888888888888888 5 66 66666666 4 66 4 1 8 777777777777777777777 1 666 4 66 2 3333 66 77777 5 999 9 77 5 5 5 222 111 55 5 3 6 3333 888 6 999 5 5 77 333 88888888 666666 77 5 5 77 55555555 4444
lowQualScore : . .. . . .. . . ............. . .. . . . . . ... . . ...... . . . . ........ . ..................... . ... . . ..... . .... ......... .. .. ... . . ... . . . .... ... . . .. . .. . ........... . . . . . . . .. . . .. . . . . . ... .. . . . . . . . . . . . ... . . . . ......... . . ............... . .. ........ . .. . . . ..................... . ... . .. . .... .. ..... . ... . .. . . . ... ... .. . . . .... ... . ... . . .. ... ........ ...... .. . . .. ........ ....
lowQualScore : 6 00 8 2 88 0 8 0000000000000 7 55 0 0 7 7 7 888 9 4 888888 0 0 9 6 33333333 2 222222222222222222222 0 000 9 6 11111 9 5555 555555555 77 66 888 3 3 000 0 7 7 2222 777 0 3 77 3 55 7 99999999999 0 0 5 0 0 9 8 99 2 8 66 9 0 0 0 0 111 44 7 7 7 7 7 9 4 7 7 7 6 888 3 4 4 0 666666666 0 5 000000000000000 0 11 11111111 4 11 4 9 9 111111111111111111111 9 999 4 33 2 9999 11 11111 0 555 4 99 7 7 7 555 777 88 0 7 7 3333 333 7 333 7 7 99 333 33333333 444444 99 7 7 99 33333333 4444
consensus : NNNNNTTTTTTTAA--TTACTGGAGGTAA-TGTGTC-AATTTT-TCATAT--TCTAGA-AAGACCGAAATTTGACCTACTTT-CTTCAAATAT-CAGCCCCCAAAATAT---CATGAGGTCACT-GAAACGTT------TCAA-TT-CA-CTTTAAAAAAAAAACCCAATGATATACA------------TGT----GTATCC-TTGT-CAAACCATCTTATT-C-----GTGTGT----AAAAA-----TTCTA-TCATTTAA--TA---TTTT-TAAAGAATATATC-GGG-T-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GATTTTTTTC-AAATT----TC-----TGTAAATGAAAGC-AGGAT-GATTACTT-CATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGATGCATTTTTTTT-A-A-TTACTGGAGGTAATGTG--TCAATTTTTCATATT-CTA-GA-AAGACC-GAAA-TTTGACCTACTTT-C-TTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAA-------CA-----ATG-AT--A--------TATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG----TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTACG--AAAAA---CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATT-AATTT--A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGGGT-GN-GACTACTACCTT
Reference ( gi|2 ) : ACATTTTTTTTTTA--TTTCTGTAGGTAA-TGTGCC-AATTTTGTTAT-T--TC--GA-AGAACCGAAATTTCACCTATTTT-CTTCAAATAT-CAGCCCCCAAAATAT---CATGAGGTCACT-GAAACGTT------TCAA-TT-CA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTA---GTATCC-TT-T-CAAACCATCTTATT-C-----GTATGT----AAAAA-----TTCTA-TCATTTAA--TA---TTTT-TAAAGAATATATC-GGG-T-TACAT-CAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAAT-TGCAATTACTCTTTAAGAATAGGTT--GATTTTTTTC-AAATT----TG-----TGTAAATGAAAGC-AGGAT-GATTACTT-CATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGATACA--TTTGTT-A-A-TTACTGGAGGTAA-GTGT-TCAATTTTTCATATT-CTATGA-AAGACC-GAAA-TTTGACCTAC-TT-C-TTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAA-------CA-----ATG-AT--A--------TATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG----TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--AAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTACG--GAAAA---CG--CTTGGGTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTA-T-AATTTA-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGGGT-TG-GACTACTACCTT
gi|1 : TTTTTTTAA--TTTCTGTAGATA--TGTGCCCAATTTT-TTAT-T------GA-ATGACCTAAATTTGACCTATTTTTCTTCAAATATTCGGCCCCCAAA-TAT---TATGAGGTCACT-GAA-CGTT------TAAA-TT-TAACTTTCAAAAACCC-CCCAATGATATA----------------TT---GTATCT-TT-TTCAAACCATCTTATTTC-----GTAAGT----AAATA-----TTCTAATCATTTAA--TA---TTTT-TAAAGAATATATC-GGG-GATACATACAA-CCCAAACTGCCAACTG----ATGTCAAATTACGC---AT-GGGGGTAGGGTTATAGAATGTGCAATTACTC-TTAAATATAGGTTA-GATTTTTTTT-TAATT----TC-----TGTAAATAAAAGC-AAGAT-GATTACTT-CATATTTCGTTAGTTTCTTTGTTA--AAATTGAACAATACATTTTTTTT-A-ATTTACTGGAGGTAATGTGT-C--ATTTTTCATATT-CCA-GA-AAGACC-GAAATTTTGACCTACTTT-C-TTC-AAATATCAAGCCCACAAAATAT---CAT-AGGTC-ATTT-GAAACGTT---TCCA--ATTTCA-CTTAAAAAA-------CA-----ATGCAT--A--------TATGTCA--TCCCTGTTCAAACC-TTTTATTACGTGTC-TTA---AAAAA--AA--TTATCAT---ATA-TTTTTTT-AA-GAATATA--CGGGC---TATTTA-C-AGGCTTA-TTTTCTGCATGA-CGAAAAAATCATAAAAAATTTG-AAGAGT-TTGGACTGGCAACCTACGAAAAAAA---CG--CTTGGTTAAATT-TCTTTGGAAT---TTCGAC--CAA-AAC-ATTGTA-TTA-TTA--CACTATT-AATTT------TTTC------CAA--TTATGAAGAAAATTGAAC-ATGG--GG----GA--AAAAGGGGGTAGGGT-GT-GACTACTAC
gi|7 : tacaTTTTTTTTA--CTACTAGAGGTAA-TGTGCC-TATTTT-TCATAT--TCTAGA-AAGACCGAAATTTGACCCATTTT-CTTCAAATAT-CAGCCCCCAAAATAT---CATGAGGTCACC-GAAACGTT------TCTA-TT-
gi|3 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcaattactctgtaaaaataggttagattacttcatattcctatacctttttgtaaaaaattaacgatgcaTTTGTTAA--TTACTGGAGGTAA-TGTGTC-AATTTT-TCATAT--TCTAGA-AAGACCGAAATTTGACCTACTTT-CTTCAAATAT-CAGCCCCCAAAATAT---CAT-AGGTCACT-GAAACGTT------TCAATTT-CA-C-TTAAAAAA------CAATGATATAT--------------------GTATCC-TTGT-CAAACCATTTTATT-C-----GTGTTTTAA-AAAAA-----T--GA-TCATTTAA--TATT-TTTT-TTAAGAATATATC-GAG-T-
gi|5 : aatatcatgaggtcactgaaacgtttcaattcactttaaaaaaaaaacccgatgatatacatgtatgtatccttttcaaaccatcttattcgtatgtaaaaattctatcatttaatatttttaaagaatatatcggggttacatacaaccaaattgccaactgacgtcaaattacgcatggggggtagggtaatagaatgtgcaattactctgtaagaataggttagatttttttcaaatttgtgtaaatgaaagcaggatgattacttcatattcctttagtttttggtaaaaattgaacgatacaTTTTTTAA--TTACTGGAGGTAAATGTGTC-A-TTTCTTCATAT--TCTAGA-AAGACCGAAATTTGACCTACTTT-CTTCAAATAT-CAGCCCCCAAAATAT---CATGAGGTCACT-GAAACGT------------------------AAAAAAAACCC--------------------------------ACCA-TT-T-----------TATT-C-----GTGTGT----AAAAA-----TT-TA-ACATTTAA--TATTTTTTT-TAAAGAATATATC-GGG-TATACAatcggcttatttttctgcatgacgaaatcataaaaattgaagagtttgactggcaacctacgaaaaacgcttggttgaatttctttggaattttgacaaaacatgtattaccacactattaatttaaattccaattatgaagaaaattgaacatggggaaaaagggggtagggtgtgactactacctt
gi|4 : tgttatcatttaatattctttaagaatatatcagggttacatacaaccaaattgccaactgcatgacgtcaaattatgcatgggggtagagtaatagaatgtgcatttactctgtaaaaataggttagttttttttaatttctgtaaatgaaagcagcttcatattcctttagtttttcgttaaaattgaacgatgcaTTTTTTAAATTACTGGAGGTAA-TGTGTC-AATTTTCATAT-TCTTA--GA-AAGACCGAAATTTGACCTACTTT-CTTCAAATAT-CAGCCCCAAAAATAT---C-T-AGGTCACT-GAAACGTT------TCAATTT-CA-C-TTAAAA--------CAATGATATAT--------------------GTATCC-TTGT-CAAACCATTTTATT-CCTGCTGT-TGTAAAAAAAAA-----T--TA-TCATTTAATTTT---TTTT-TAAAGAATATATC-GAG-TATACAggcttatttttctgcatgacggaaatcataaaaactgaagagtttggaatttcgacaaaacgtgtattaccacactattaatttatattccaattatgaagaaaattgaacatggggaaaaa
gi|6 : tttacttttaaaaaaacaatgatatacaaaaaggcgaagttatgtatccttttcaaaccatcttattcgtaagtaaaagttttatcatttaatatttttaaagaatatatcggggttacatacaaccaaattgccaactgacgtcaaattgcgcatggggggtagggtaattttatgtgcaattactctgtaaaaataggtttagatttttttttaaatttctgtaaatgaagcaggatgattactttcatcttcctttagttttttgttaaaattgaacgatacaTAT-T--TCTAGATAAGATCGAA-TTTGACCTACTTT-CTTCAA-TAT-CAGCCCC---AATACAAACAT-AGGTCACTTGAAACTTG------TCAA-TTTCATCTTTAAAAACATAACCAG--GATTTATA------------TGTA------TCC-TTGT-CAAACCATTTTATT-C------CGTGT----AAAAAGGAACTTC-A-TCATTTAA--TAT--TTTT-TATAGAATATA-C-GAG-T-ggcttatttttctgcatgatggaaatcataaaattgaagagtttgactagcaacctacgaaaaagcttggttgaatttctttgaaatttgacaaaacatgtattaccacactattaatttattattcgaattatgaagacaattgaacatgggggataaaagggggtagggtgtgactactacct
gi|12 : gttcacatcctccGCCCCCAAAATAT---CATTAGGTCACT-AAAACGGT------TCAATTT-CA-CTTAAAAAAAAAAACCCAATGATATACA------------TGTGTATGCATCCTTT-T-CAAACCATCTTATT-C-----Gatagcggggcttatttttctggctgagtggaactcataaaattgaagagtattgactggcaacctacgggaaaaaccggccttggttgcattgtcttttgcacatatttgaccaaacaatgtattacccacccactatagcttctactatttccaatatgagaaaataagatgggcgaaaaaaaaggggataggagcgtgaccactacct
gi|3 : AATAT---CATGAGGTCACT-GAAACGTT------TCAA-TT-CA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTAT--GTATCC-TT-TTCAAACCATCTTATT-C-----GTATGT----AAAAA-----TTCTA-TCATTTAA--TA---TTTT-TAAAGAATATATC-GGGGT-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAGAATAGGTTA-GATTTTTTTC-AAATT----TG-----TGTAAATGAAAGC-AGGAT-GATTACTT-CATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGATACA--TTTGTT-A-A-TTACTGGAGGTAATGTG--TCAATTTTTCATATT-CTA-GA-AAGACC-GAAA-TTTGACCTACTTT-C-TTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAA-------CA-----ATG-AT--A--------TATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG----TA--T--C--GGCTTATTTTTCTGCATGA-CG---AAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTACG--AAAAA---CG--CTTGGTTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATT-AATTT--A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGGGT-GT-GACTACTACCTT
gi|8 : T-GAAATGTTAGGTCGTTAT-TT-CG-CTTGAAAA--------CAATGATATAT--------------------GTATCC-TT-TGCAAACCAT-TTATT-C-----GTGTGT-------AA-----TTT------TTTAA---A---------AAAGAATACATC-GGG-T-
gi|4 : -TT-TA-CTTTTAAAAAAA----CAATGATATACAAAAAGGCGAAGTTAT----GTATCC-TT-TTCAAACCATCTTATT-C-----GTAAGT----AAAAG-----TTTTA-TCATTTAA--TA---TTTT-TAAAGAATATATC-GGGGT-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTGCGC---ATGGGGGGTAGGGTAATTTTATGTGCAATTACTCTGTAAAAATAGGTTTAGATTTTTTTTTAAATT----TC-----TGTAAATGAA-GC-AGGAT-GATTACTTTCATCTTCCTTTAGTTT-TTTGTTA--AAATTGAACGATACA--TTTTTTAA-A-TTACTGGAGGTAATGTG--TCAA-TTTTCATATT-CTTAGA-AAGACC-GAAA-TTTGACCTACTTT-C-TTC-AAATATC-AGCCCCAAAAATAT---C-T-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTT--AAAA-------CA-----ATG-AT--A--------TATGT-A--TCCTTG-TCAAACCATTTTATT-CCTGCTGTTGTAAAAAAA--AA--TTATCATTTAATTTTTTTTTA-AA-GAATATA-TCGAG----TA--TA-C-AGGCTTATTTTTCTGCATGA-TG--GAAATCAT-AAAA--TTG-AAGAGT-TT-GACTAGCAACCTACG--AAAAA----G--CTTGGTTGAATT-TCTTTGAAA----TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATT-AATTTA-T--TATTC------GAA--TTATGAAGACAATTGAAC-AT-G--GG----GGATAAAAGGGGGTAGGGT-GT-GACTACTACCTattcgagcttatttttctgcattacagaaatcataaaaattgaagagattgactggcaacttacgaaaagcgctttgttaaatttctttggaatttcagcatgacgtgtattgccacaaaattaatttatcttccaattatgaagaaaattgaacttgaggagggggtagggtgagactact
gi|11 : ---GTATTC-TTGT-CAAACCATTTTATT-C-----TTATGA----AAAAA-----AAATA-TCATTTAA--TA---TTTTGTAAAGGATATATC-GGG-T-
gi|7 : tatatT-C-----GTAAAT----AAAAC-----TTTTA--CATTTAA--TA---TTTT-TAAAGAATATATC-GGGGT-TACATACAG-CC-AAATTGCCAACTG----ACGTCAAATTACGC---AT-GGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--AGATTACTTC-ATATT----atataggtttatttttctgcatgacggaaatcataaaa
gi|10 : AAAA-----CT-TA--CATTTAA--AA---TTTT-AAAAGAA--TATC-GGG-T-TACATACAAGCC-AAAATGCCAA-TG----ACGTCAA--TACGCTAAAT---GGGTAGGAAATTTAAAT-TCAAATTA--CCGTAAAA--AGGTT--AAGATACTTC-ATATTCCTATGCCTTTTGTAAATAAAcctatacctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|5 : atTA-TCATTTAA--TA---TTCT-TTAAGAATATATCAGGG-T-TACATACAA-CC-AAATTGCCAACTGCATGACGTCAAATTATGC---ATGGGGG-TAGAGTAATAGAATGTGCATTTACTCTGTAAAAATAGGTT--AGTTTTTTTT-AA-TT----TC-----TGTAAATGAAAGC-AG---------CTT-CATATTCCTTTAGTTT-TTCGTTA--AAATTGAACGATGCA--TTTTTT-A-A-TTACTGGAGGTAA-ATGTGTCATTTCTTCATATT-CTA-GA-AAGACC-GAAA-TTTGACCTACTTT-C-TTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CT-GAAACGT-------A--A---------AAAAAA-------C---------------------------------CC--------ACCATTTTATT-CGTGTG-T------AAAA--AT--TTAACATTTAATATTTTTTTTAAA-GAATATA-TCGGG----TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--CTG-AAGAGT-TT-Gtaacgattagcttttatttactcagagtagtgcatttcatatctagcaagaccagaaatgacccatttcattcaaaacaccgctccaaacaatggttcaaccgacacg
gi|10 : tgtTTC-AAATT----AC-----CGTAAA--AAGGTTAAGAT-----ACTT-CATATTCCTAT-GCCT-TTTGTAAATAAAT--AACGAT-TA--GCTTTT-A-T-TTACTCAGAGT-A-GTG---CA---TTTCATA-T-CTA-GC-AAGACCAGAAA---TGACCCAT-TT-CATTCAAAACACC--GCTCC--AAACA-----AT-GGTTCAA-CC-GACACGgaatttcgacaaaacgtgtattaccacactattaatttatattccaattatgaagaaaattgaacatggggaaaaa
gi|14 : ataaaacttacatttaaaattttaaaagaatatcgggttacatacaagccaaaatgccaatgacgtcaatacgctaaatgggtaggaaatttaaaT----TC-----TGTAAATGAAAGC-TGGAT-GATAACTC-CATATTCCGTTAGTTT-TTTGTCA--AAATTAAACGATGCATTTTTTTT-A-A-TTACTGGAGGTAATGTG--TCAA
gi|13 : T----TC-----TGTAAATGAAAGC-TGGAT-GATAACTC-CGTATTGCGTTAGTTT-TTTGTCA--AAATTAAACGATACATTTTTTTT-A-A-TTACTAGAGGTAATGTG--TCAAT
gi|7 : TAAAAAT-AGGTTAGATTACTT-CATATTCCTATACCTT-TTTGTAA--AAAATTAACGATGCA--TTTTTT-TTA-CTACTAGAGGTAATGTGC--CTATTTTTCATATT-CTA-GA-AAGACC-GAAA-TTTGACCCAT-TTTC-TTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CC-GAAACGTT---T-CT--ATT
gi|6 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcaattactctgGT-TCACATCCTCCTATTTCTA-GATAAGATC-GAA--TTTGACCTAC-TTTC-TTC-AA-TATC-AGCCCC---AATACAAACAT-AGGTC-A-CTTGAAACTTG---T-CA--ATTTCATCTTTAAAAA-------CATAACCAGG-ATTTA--------TATGT-A--TCCTTG-TCAAACCATTTTATTCCGTG----T----AAAAAGGAACTTCATCATTTAATATTTTTTAT--A-GAATATA--CGAG----TA--TAGCGGGGCTTATTTTTCTGGCTGAGTG--GAACTCAT-AAAA--TTG-AAGAGTATT-GACTGGCAACCTACG--GGAAAAACCGGCCTTGGTTGCATTGTCTTTTGCACATATTTGA---CCA-AACAA-TGTA-TTACCCACCCACTA-T-AGCTTCTACTATTTC------CAA---TATG-AGAAAAT--AAG-AT-G--GGCGAAAA--AAAAGGGGATAGGAG-CGTGACCACTACCT
gi|12 : GCCCCCAAAATAT---CATTAGGTC-A-CT-AAAACGGT---T-CA--ATTTCA-CTTAAAAAAAAAAACCCA-----ATG-AT--ATACATGTGTATGC-A--TCCTTT-TCAAACCATCTTATT-CG
gi|9 : ATAT---CGA-ATGTA-A-TT--AGGCGTT---T-------TTCG-CTTTGAA---------TA-----ATG-AT--A--------TATGT-AACTCCT-G-TTGCACC---TTATG-CGTGTT----------------------------GTATTTTTTTA-AAAGAATTTACTTTTG----TA--TT-T-CGGCTTATTTTTCTGCATTA-CG----AATCAT-ATAA--TTGTGAGATA-TT-GACTG--AGATTACG--AAAAG---CGT-CTTTGTT--ATT-T-TTTGGTAT---TTCGGCTTCAGTAAC-G--GTACTTG-CCA--C-CTA-A-AATTC-----AATTCGTTCTTCCA--TTG-GAAG-TAATTGA---AT-G--GG------------GGGGGTTGGGTATG-TACTCCT
gi|8 : T-GAAATGTTAGGT-CGTTATTTCG-CTTGAAAA--------CA-----ATG-AT--A--------TATGT-A--TCCTTT-GCAAACCATTT-ATT-CGTGT----------------G--TAATTTTTTAAAA---------AA-GAATACA-TCGGG----TA--TT-C-GAGCTTATTTTTCTGCATTA-CA--GAAATCATAAAAA--TTG-AAGAGA-TT-GACTGGCAACTTACG--AAAAG---CG--CTTTGTTAAATT-TCTTTGGAAT---TTCAG---CAT-GAC-G-TGTA-TTG-CCA--CAAAATT-AATTT--A--TCTTC------CAA--TTATGAAGAAAATTGAAC-TT-G--AG----G------AGGGGGTAGGGT-GA-GACTACT
gi|11 : T--A--------TATGT-A--TTCTTG-TCAAACCATTTTATT-CTTATG-AA----AAAAA--AA--T-ATCATTTAATATTTTGTA--AA-GGATATA-TCGGG----TA--TA-T-AGGTTTATTTTTCTGCATGA-CG--GAAATCATAAAA
gi|7 : CATTTAATATTTTTA---AA-GAATATA-TCGGGGTTACA--TA-C-AG
gi|15 : tcgtaaataaaactttta-TTA-CCT--CACTA-TCAATT------AATTT------TGAACTTATGAAGAAAATTGAACTAT-AATGG----AA--AAAAGGGGGTAAGGT-TA-GACTACTACCTTccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcaattactctgtaaaaataggttagattacttcatattcctatacctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|16 : tAGGGGGTAGGGT-GT-GACTACTACCTT
Alignments
lowQualScore : 1 1 1 2 88888888888 1 2 2 11 444444444444444444 1111 2 11 11 111 1111 111 11 11111 33333333 11111 11 111 1111 222222 111111 11111111
lowQualScore : 4 7 5 5 6 0 33333333333 1 2 2 6 0 0 3 3 8 8 1 11 555555555555555555 7777 0 6 22 3 00 5 777 5 5 2222 000 4 4 0 99 5 55 1 4 4 2 4 4 1 66 66 99 4 4 4 0 5 5 5 5 5 5 5 5 777 8 4 4 4 888888888 88 5 0 22222 5 66 4 66 4 1 8 33333333 77777777 1 99 4 66 4 66 11111 4 66 7 66 5 5 5 66 66 5 5 11 00 5 0 888 5 333 5 6666 4 4 66 1 55 222222 222222 66 2 4 4 66 55555555 4 1
lowQualScore : . . . . . . ........... . . . . . . . . . . . .. .................. .... . . .. . .. . ... . . .... ... . . . .. . .. . . . . . . . .. .. .. . . . . . . . . . . . . ... . . . . ......... .. . . ..... . .. . .. . . . ........ ........ . .. . .. . .. ..... . .. . .. . . . .. .. . . .. .. . . ... . ... . .... . . .. . .. ...... ...... .. . . . .. ........ . .
lowQualScore : 0 0 0 5 0 0 00000000000 5 5 5 0 0 0 2 2 0 0 0 22 888888888888888888 0000 0 7 66 7 77 7 333 7 7 1111 000 3 3 7 33 7 00 9 4 4 1 4 4 0 11 11 22 4 4 4 1 0 0 0 0 0 0 0 6 888 9 4 4 0 666666666 11 5 1 55555 0 11 4 11 4 9 9 88888888 33333333 9 33 4 33 4 11 99999 4 11 3 99 0 0 0 99 99 0 0 99 55 0 2 888 4 888 0 4444 4 4 11 9 66 000000 888888 11 0 4 4 11 44444444 4 0
consensus : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATATTC--GAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTA-GT----ATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATC-GGGGT-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
Reference ( family-6140 ) : NNNNNTTTTTTTAATTACTGGAGGTAATGTGTC-AATTTT-TCATATTCTAGAAAGACCGAAATTTGACCTACTTT-CTTCAAATAT-CAGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCAATGATATACA------------TGT--GT----ATCCTTGTCAAACCATCTTATT-CGTGTGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATC-GGG-T-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGNGACTACTACCTT
gi|1 : TTTTTTTAATTTCTGTAGATA-TGTGCCCAATTTT-T--TATT---GAATGACCTAAATTTGACCTATTTTTCTTCAAATATTCGGCCCCCAAA-TATTATGAGGTCACTGAA-CGTTTAAA-TTTAACTTTCAAAAACCC-CCCAATGATATAT---------------T--GT----ATCTTTTTCAAACCATCTTATTTCGTAAGTAAATATTCTAATCATTTAATATTTTTAAAGAATATATC-GGG-GATACATACAA-CCCAAACTGCCAACTG----ATGTCAAATTACGC---ATGGGGG-TAGGGTTATAGAATGTGCAATTACTCT-TAAATATAGGTTA-GA-TTTTTTTTTAATT--TCTGTAAATAAAAGC-AAGAT-GATTAC-TTCATATTTCGTTAGTTTCTTTGTTA--AAATTGAACAAT--ACATTTTTTTTAATTTACTGGAGGTAA-TGTG-TC-ATTTTTCATATTC-CA-GA-AAGACC-GAAATTTTGACCTACTTTCTTC-AAATATCAAGCCCACAAAATAT---CAT-AGGTC-ATTT-GAAACGTT---TCCA--ATTTCA-CTTAAAAAACA-----ATGCAT--ATATGTCA--TCCCTGTTCAAACC-TTTTATTACGTGTC-TTA---AAAAA--AA--TTATCAT---ATA-TTTTTTT-AA-GAATATA--CGGGCTATTTA-C-AGGCTTA-TTTTCTGCATGA-CGAAAAAATCATAAAAAATTTG-AAGAGT-TTGGACTGGCAACCTAC--GAAA-AAAA-CG--CTTGGTTAAATT-TCTTTGGAAT---TTCGAC--CAA-AAC-ATTGTA-TTA-TTA--CACTATTAATT-T-----TTTC------CAA--TTATGAAGAAAATTGAAC-ATGG--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTAC
gi|10 : tacaAAAACT-TA--CATTTAAAATTTTAAAAGAATAT--C-GGG-T-TACATACAAGCC-AAAATGCCAA-TG----ACGTCAA--TACGCTAAAT---GGGTAGGAAATTTAAAT-TCAAATTA--CCGTAAAA--AGGTT--AA-GATACTTCATATT--CCTAT
gi|10 : atTTCAAATT--ACCGTAAA--AAGGTTAAGAT-----AC-TTCATATTCCTAT-GCCT-TTTGTAAATAAAT--AACGATTAGC-----TTTTAT-TTACTCAGAGTAG-TG----CA---TTTCATA-TC-TA-GC-AAGACCAGAAA---TGACCCATTTCATTCAAAACACC--GCTCC--AAACA-----AT-GGTTCAA-CC-GACACGgccttttgtaaataaataacgattagcttttatttactcagagtagtgcatttcatatctagcaagaccagaaatgacccatttcattcaaaacaccgctccaaacaatggttcaaccgacacg
gi|11 : ataaaacttacatttaaaattttaaaagaatatcgggttacatacaagccaaaatgccaatgacgtcaatacgctaaatgggtaggaaatttaaaT--ATATGT-A--TTCTTG-TCAAACCATTTTATT-CTTATG-AA----AAAAA--AA--T-ATCATTTAATATTTTGTA--AA-GGATATA-TCGGG-TA--TA-T-AGGTTTATTTTTCTGCATGA-CG--GAAATCATAAAA
gi|12 : GCCCCCAAAATATCATTAGGTCACTAAAACGGTTCAATTTCA-CTTAAAAAAAAAAACCCAATGATATACA------------TGT--GTATGCATCCTTTTCAAACCATCTTATT-CG
gi|13 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCGTATTGCGTTAGTTT-TTTGTCA--AAATTAAACGAT--ACATTTTTTTTAA-TTACTAGAGGTAA-TGTG-TCAAT
gi|14 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCATATTCCGTTAGTTT-TTTGTCA--AAATTAAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAA
gi|15 : -TTA-CCT--CACTATCAATT------AATTT------TGAACTTATGAAGAAAATTGAACTAT-AATGG----AA--AAAAGGGGGTAAG-GTTAGACTACTACCTT
gi|16 : tAGGGGGTAGG-GTGTGACTACTACCTT
gi|2 : TTTTTTTTATTTCTGTAGGTAATGTGCC-AATTTTGTTAT-TTC--GAAGAACCGAAATTTCACCTATTTT-CTTCAAATAT-CAGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTA-GT----ATCCTT-TCAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATC-GGG-T-TACAT-CAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAAT-TGCAATTACTCTTTAAGAATAGGTT--GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACATTTGTT--AA-TTACTGGAGGTAA--GTGTTCAATTTTTCATATTC-TATGA-AAGACC-GAAA-TTTGACCTAC-TTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--AAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--G-AAAA-CG--CTTGGGTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTA-TAATT-TAA--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTTGGACTACTACCTTaataa
gi|3 : acattAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTATGT----ATCCTTTTCAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATC-GGGGT-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAGAATAGGTTA-GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACATTTGTT--AA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--T--C--GGCTTATTTTTCTGCATGA-C---GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|4 : -TTTA-CTTTTAAAAAAA----CAATGATATACAAAAAGGCGAAGTTAT--GT----ATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAGTTTTA-TCATTTAATATTTTTAAAGAATATATC-GGGGT-TACATACAA-CC-AAATTGCCAACTG----ACGTCAAATTGCGC---ATGGGGGGTAGGGTAATTTTATGTGCAATTACTCTGTAAAAATAGGTTTAGATTTTTTTTTAAATT--TCTGTAAATG-AAGC-AGGAT-GATTACTTTCATCTTCCTTTAGTTT-TTTGTTA--AAATTGAACGAT--ACA-TTTTTTAAA-TTACTGGAGGTAA-TGTG-TCAA-TTTTCATATTCTTA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCAAAAATAT---C-T-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTT--AAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CCTGCTGTTGTAAAAAAA--AA--TTATCATTTAATTTTTTTTTA-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-TG--GAAATCAT-AAAA--TTG-AAGAGT-TT-GACTAGCAACCTAC--G--A-AAAA--G--CTTGGTTGAATT-TCTTTGAAAT---TT-GA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-AT-TATTC------GAA--TTATGAAGACAATTGAAC-AT-G--GG----GGATAAAAGGGGGTAGG-GTGTGACTACTACCT
gi|5 : TA-TCATTTAATATTCTTTAAGAATATATCAGGG-T-TACATACAA-CC-AAATTGCCAACTGCATGACGTCAAATTATGC---ATGGGGG-TAGAGTAATAGAATGTGCATTTACTCTGTAAAAATAGGTT--AG-TTTTTTTTAA-TT--TCTGTAAATGAAAGC-AG---------C-TTCATATTCCTTTAGTTT-TTCGTTA--AAATTGAACGAT--GCATTTTTT--AA-TTACTGGAGGTAAATGTG-TCATTTCTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CT-GAAACGT-------A--A---------AAAAAAC-------------------------CC--------ACCATTTTATT-CGTGTG-T------AAAA--AT--TTAACATTTAATATTTTTTTTAAA-GAATATA-TCGGG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--CTG-AAGAGT-TT-GG-----AATTT-C--G--ACAAAA-CG--------TGTATT------------------A---CCA-CAC-----TA-TTA---A--T-TTAT--ATT-C-C--AATT---------A--TGAAGAAAA---TTGAAC-AT-G--GG----GA--AAAA
gi|6 : tgtTTC-TA-GATAAGATC-GAA--TTTGACCTACTTTCTTC-AA-TATC-AGCCCC---AATACAAACAT-AGGTC-A-CTTGAAACTTG---T-CA--ATTTCATCTTTAAAAACATAACCAGG-ATTTATATGT-A--TCCTTG-TCAAACCATTTTATTCCGTG----T----AAAAAGGAACTTCATCATTTAATATTTTTTAT--A-GAATATA--CGAG-TA--TAGCGGGGCTTATTTTTCTGGCTGAGTG--GAACTCAT-AAAA--TTG-AAGAGTATT-GACTGGCAACCTACGGG--A-AAAACCGGCCTTGGTTGCATTGTCTTTTGCACATATTTGA---CCA-AACAA-TGTA-TTACCCACCCACTATAGCTTCT-ACTATTTC------CAA---TATG-AGAAAAT--AAG-AT-G--GGCGAAAA--AAAAGGGGATAGGAGCGTGACCACTACCT
gi|7 : gttcacatcctcctatT-CGTAAATAAAACTTTTA--CATTTAATATTTTTAAAGAATATATC-GGGGT-TACATACAG-CC-AAATTGCCAACTG----ACGTCAAATTACGC---ATGGGG-GTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--AG-ATTACTTCATATT--CCTATA
gi|7 : AATTACTCTGTAAA----AAT-AGGTTAGATTAC-TTCATATTCCTATACCTT-TTTGTAA--AAAATTAACGAT--GCATTTTTTTTA--CTACTAGAGGTAA-TGTG-CCTATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCCATTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CC-GAAACGTT---T-CT--ATTcctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|8 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcT-GAAATGTTAGGT-CGTTATTTCG-CTTGAAAA-CA-----ATG-AT--ATATGT-A--TCCTTT-GCAAACCATTT-ATT-CGTGT----------------G--TAATTTTTTAAAA---------AA-GAATACA-TCGGG-TA--TT-C-GAGCTTATTTTTCTGCATTA-CA--GAAATCATAAAAA--TTG-AAGAGA-TT-GACTGGCAACTTAC--G--A-AAAG-CG--CTTTGTTAAATT-TCTTTGGAAT---TTCAG---CAT-GAC-G-TGTA-TTG-CCA--CAAAATTAATT-T-A--TCTTC------CAA--TTATGAAGAAAATTGAAC-TT-G--AG----G------AGGGGGTAGG-GTGAGACTACT
gi|9 : ATAT---CGA-ATGTA-A-TT--AGGCGTT---T-------TTCG-CTTTGAA--TA-----ATG-AT--ATATGT-AACTCCT-G-TTGCACC---TTATG-CGTGTT----------------------------GTATTTTTTTA-AAAGAATTTACTTTTG-TA--TT-T-CGGCTTATTTTTCTGCATTA-CG----AATCAT-ATAA--TTGTGAGATA-TT-GACTG--AGATTAC--G--A-AAAG-CGT-CTTTGTT--ATT-T-TTTGGTAT---TTCGGCTTCAGTAAC-G--GTACTTG-CCA--C-CTA--AAAT-T-C--AATTCGTTCTTCCA--TTG-GAAG-TAATTGA---AT-G--GG------------GGGGGTTGG-GTATG--TACT-CCT
Alignments
lowQualScore : 1 1 1 444 1 1 11 5555555555555555555 11 1 1111 111 1 11 11111 33333333 11111 11 111 1111 222222 111111 11111111
lowQualScore : 1 5 5 5 666 1 1 1 5 5 3 3 8 8 1 11 7777777777777777777 0 6 1 3 00 1 2222 000 1 4 0 99 5 55 1 4 4 2 4 4 1 66 66 99 4 4 4 0 5 5 5 5 5 5 5 5 777 8 4 4 4 888888888 88 5 0 22222 5 66 4 66 4 1 8 33333333 77777777 1 99 4 66 4 66 11111 4 66 7 66 5 5 5 66 66 5 5 11 00 5 0 888 5 333 5 6666 4 4 66 1 55 222222 222222 66 2 4 4 66 55555555 4
lowQualScore : . . . . ... . . . . . . . . . . .. ................... . . . . .. . .... ... . . . .. . .. . . . . . . . .. .. .. . . . . . . . . . . . . ... . . . . ......... .. . . ..... . .. . .. . . . ........ ........ . .. . .. . .. ..... . .. . .. . . . .. .. . . .. .. . . ... . ... . .... . . .. . .. ...... ...... .. . . . .. ........ .
lowQualScore : 0 5 0 0 000 0 0 0 5 5 2 2 0 0 0 22 0000000000000000000 8 7 4 7 77 4 1111 000 4 3 7 33 7 00 9 4 4 1 4 4 0 11 11 22 4 4 4 1 0 0 0 0 0 0 0 6 888 9 4 4 0 666666666 11 5 1 55555 0 11 4 11 4 9 9 88888888 33333333 9 33 4 33 4 11 99999 4 11 3 99 0 0 0 99 99 0 0 99 55 0 2 888 4 888 0 4444 4 4 11 9 66 000000 888888 11 0 4 4 11 44444444 4
consensus : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTAT-TTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTAT--GTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
Reference ( family-6140 ) : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATATTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTA---GTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|1 : TTTTTTTAATTTCTGTAGATA-TGTGCCCAATTTT-TTAT---TGAATGACCTAAATTTGACCTATTTTTCTTCAAATATTCGGCCCCCAAA-TATTATGAGGTCACTGAA-CGTTTAAA-TTTAACTTTCAAAAACCC-CCCAATGATATA----------------TT---GTATCTTTTTCAAACCATCTTATTTCGTAAGTAAATATTCTAATCATTTAATATTTTTAAAGAATATATCGGGGATACATACAACCCAAACTGCCAACTG----ATGTCAAATTACGC---AT-GGGGGTAGGGTTATAGAATGTGCAATTACTCT-TAAATATAGGTTA-GA-TTTTTTTTTAATT--TCTGTAAATAAAAGC-AAGAT-GATTAC-TTCATATTTCGTTAGTTTCTTTGTTA--AAATTGAACAAT--ACATTTTTTTTAATTTACTGGAGGTAA-TGTG-TC-ATTTTTCATATTC-CA-GA-AAGACC-GAAATTTTGACCTACTTTCTTC-AAATATCAAGCCCACAAAATAT---CAT-AGGTC-ATTT-GAAACGTT---TCCA--ATTTCA-CTTAAAAAACA-----ATGCAT--ATATGTCA--TCCCTGTTCAAACC-TTTTATTACGTGTC-TTA---AAAAA--AA--TTATCAT---ATA-TTTTTTT-AA-GAATATA--CGGGCTATTTA-C-AGGCTTA-TTTTCTGCATGA-CGAAAAAATCATAAAAAATTTG-AAGAGT-TTGGACTGGCAACCTAC--GAAA-AAAA-CG--CTTGGTTAAATT-TCTTTGGAAT---TTCGAC--CAA-AAC-ATTGTA-TTA-TTA--CACTATTAATT-T-----TTTC------CAA--TTATGAAGAAAATTGAAC-ATGG--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTAC
gi|10 : tacaAAAACT-TA--CATTTAAAATTTTAAAAGAA--TATC-GGGTTACATACAAGCCAAAATGCCAA-TG----ACGTCAA--TACGCTAAAT---GGGTAGGAAATTTAAAT-TCAAATTA--CCGTAAAA--AGGTT--AA-GATACTTCATATT--CCTAT
gi|10 : atTTCAAATT--ACCGTAAA--AAGGTTAAGAT-----AC-TTCATATTCCTAT-GCCT-TTTGTAAATAAAT--AACGATTAGC-----TTTTAT-TTACTCAGAGTAG-TG----CA---TTTCATA-TC-TA-GC-AAGACCAGAAA---TGACCCATTTCATTCAAAACACC--GCTCC--AAACA-----AT-GGTTCAA-CC-GACACGgccttttgtaaataaataacgattagcttttatttactcagagtagtgcatttcatatctagcaagaccagaaatgacccatttcattcaaaacaccgctccaaacaatggttcaaccgacacg
gi|11 : ataaaacttacatttaaaattttaaaagaatatcgggttacatacaagccaaaatgccaatgacgtcaatacgctaaatgggtaggaaatttaaaT--ATATGT-A--TTCTTG-TCAAACCATTTTATT-CTTATG-AA----AAAAA--AA--T-ATCATTTAATATTTTGTA--AA-GGATATA-TCGGG-TA--TA-T-AGGTTTATTTTTCTGCATGA-CG--GAAATCATAAAA
gi|12 : GCCCCCAAAATATCATTAGGTCACTAAAACGGTTCAATTTCA-CTTAAAAAAAAAAACCCAATGATATACA------------TGTGTATGCATCCTTTTCAAACCATCTTATT-CG
gi|13 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCGTATTGCGTTAGTTT-TTTGTCA--AAATTAAACGAT--ACATTTTTTTTAA-TTACTAGAGGTAA-TGTG-TCAAT
gi|14 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCATATTCCGTTAGTTT-TTTGTCA--AAATTAAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAA
gi|15 : -TTA-CCT--CACTATCAATT------AATTT------TGAACTTATGAAGAAAATTGAACTAT-AATGG----AA--AAAAGGGGGTAAG-GTTAGACTACTACCTT
gi|16 : tAGGGGGTAGG-GTGTGACTACTACCTT
gi|2 : TTTTTTTTATTTCTGTAGGTAATGTGCC-AATTTTGTTAT-TTCGAAGAACCGAAATTTCACCTATTTT-CTTCAAATAT-CAGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTA---GTATCCTTT-CAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGG-TTACAT-CAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAAT-TGCAATTACTCTTTAAGAATAGGTT--GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACATTTGTT--AA-TTACTGGAGGTAA--GTGTTCAATTTTTCATATTC-TATGA-AAGACC-GAAA-TTTGACCTAC-TTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--AAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--G-AAAA-CG--CTTGGGTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTA-TAATT-TAA--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTTGGACTACTACCTTaataa
gi|3 : acattAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------------TGTAT--GTATCCTTTTCAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAGAATAGGTTA-GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACATTTGTT--AA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--T--C--GGCTTATTTTTCTGCATGA-C---GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|4 : -TTTA-CTTTTAAAAAAA----CAATGATATACAAAAAGGCGAAGTTAT----GTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAGTTTTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTGCGC---ATGGGGGGTAGGGTAATTTTATGTGCAATTACTCTGTAAAAATAGGTTTAGATTTTTTTTTAAATT--TCTGTAAATG-AAGC-AGGAT-GATTACTTTCATCTTCCTTTAGTTT-TTTGTTA--AAATTGAACGAT--ACA-TTTTTTAAA-TTACTGGAGGTAA-TGTG-TCAA-TTTTCATATTCTTA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCAAAAATAT---C-T-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTT--AAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CCTGCTGTTGTAAAAAAA--AA--TTATCATTTAATTTTTTTTTA-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-TG--GAAATCAT-AAAA--TTG-AAGAGT-TT-GACTAGCAACCTAC--G--A-AAAA--G--CTTGGTTGAATT-TCTTTGAAAT---TT-GA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-AT-TATTC------GAA--TTATGAAGACAATTGAAC-AT-G--GG----GGATAAAAGGGGGTAGG-GTGTGACTACTACCT
gi|5 : TA-TCATTTAATATTCTTTAAGAATATATCAGGGTTACATACAA-CCAAATTGCCAACTGCATGACGTCAAATTATGC---ATGGGGG-TAGAGTAATAGAATGTGCATTTACTCTGTAAAAATAGGTT--AG-TTTTTTTTAA-TT--TCTGTAAATGAAAGC-AG---------C-TTCATATTCCTTTAGTTT-TTCGTTA--AAATTGAACGAT--GCATTTTTT--AA-TTACTGGAGGTAAATGTG-TCATTTCTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CT-GAAACGT-------A--A---------AAAAAAC-------------------------CC--------ACCATTTTATT-CGTGTG-T------AAAA--AT--TTAACATTTAATATTTTTTTTAAA-GAATATA-TCGGG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--CTG-AAGAGT-TT-GG-----AATTT-C--G--ACAAAA-CG--------TGTATT------------------A---CCA-CAC-----TA-TTA---A--T-TTAT--ATT-C-C--AATT---------A--TGAAGAAAA---TTGAAC-AT-G--GG----GA--AAAA
gi|6 : tgtTTC-TA-GATAAGATC-GAA--TTTGACCTACTTTCTTC-AA-TATC-AGCCCC---AATACAAACAT-AGGTC-A-CTTGAAACTTG---T-CA--ATTTCATCTTTAAAAACATAACCAGG-ATTTATATGT-A--TCCTTG-TCAAACCATTTTATTCCGTG----T----AAAAAGGAACTTCATCATTTAATATTTTTTAT--A-GAATATA--CGAG-TA--TAGCGGGGCTTATTTTTCTGGCTGAGTG--GAACTCAT-AAAA--TTG-AAGAGTATT-GACTGGCAACCTACGGG--A-AAAACCGGCCTTGGTTGCATTGTCTTTTGCACATATTTGA---CCA-AACAA-TGTA-TTACCCACCCACTATAGCTTCT-ACTATTTC------CAA---TATG-AGAAAAT--AAG-AT-G--GGCGAAAA--AAAAGGGGATAGGAGCGTGACCACTACCT
gi|7 : gttcacatcctcctatT-CGTAAATAAAACTTTTA--CATTTAATATTTTTAAAGAATATATCGGGGTTACATACAG-CCAAATTGCCAACTG----ACGTCAAATTACGC---AT-GGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--AG-ATTACTTCATATT--CCTATA
gi|7 : AATTACTCTGTAAA----AAT-AGGTTAGATTAC-TTCATATTCCTATACCTT-TTTGTAA--AAAATTAACGAT--GCATTTTTTTTA--CTACTAGAGGTAA-TGTG-CCTATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCCATTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CC-GAAACGTT---T-CT--ATTcctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|8 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcT-GAAATGTTAGGT-CGTTATTTCG-CTTGAAAA-CA-----ATG-AT--ATATGT-A--TCCTTT-GCAAACCATTT-ATT-CGTGT----------------G--TAATTTTTTAAAA---------AA-GAATACA-TCGGG-TA--TT-C-GAGCTTATTTTTCTGCATTA-CA--GAAATCATAAAAA--TTG-AAGAGA-TT-GACTGGCAACTTAC--G--A-AAAG-CG--CTTTGTTAAATT-TCTTTGGAAT---TTCAG---CAT-GAC-G-TGTA-TTG-CCA--CAAAATTAATT-T-A--TCTTC------CAA--TTATGAAGAAAATTGAAC-TT-G--AG----G------AGGGGGTAGG-GTGAGACTACT
gi|9 : ATAT---CGA-ATGTA-A-TT--AGGCGTT---T-------TTCG-CTTTGAA--TA-----ATG-AT--ATATGT-AACTCCT-G-TTGCACC---TTATG-CGTGTT----------------------------GTATTTTTTTA-AAAGAATTTACTTTTG-TA--TT-T-CGGCTTATTTTTCTGCATTA-CG----AATCAT-ATAA--TTGTGAGATA-TT-GACTG--AGATTAC--G--A-AAAG-CGT-CTTTGTT--ATT-T-TTTGGTAT---TTCGGCTTCAGTAAC-G--GTACTTG-CCA--C-CTA--AAAT-T-C--AATTCGTTCTTCCA--TTG-GAAG-TAATTGA---AT-G--GG------------GGGGGTTGG-GTATG--TACT-CCT
Alignments
lowQualScore : 1 1 1 11 1 1 11 4444444444444 11 1 1111 111 1 11 11111 33333333 11111 11 111 1111 222222 111111 11111111
lowQualScore : 1 5 5 5 88 1 1 1 5 5 3 3 8 8 1 11 5555555555555 0 0 6 1 3 00 1 2222 000 1 4 0 99 5 55 1 4 4 2 4 4 1 66 66 4 1 4 4 4 0 5 5 5 5 5 5 5 5 777 8 4 4 4 888888888 88 5 0 22222 5 66 4 66 4 1 8 33333333 77777777 1 99 4 66 4 66 11111 4 66 7 66 5 5 5 66 66 5 5 11 00 5 0 888 5 333 5 6666 4 4 66 1 55 222222 222222 66 2 4 4 66 55555555 4
lowQualScore : . . . . .. . . . . . . . . . . .. ............. . . . . . .. . .... ... . . . .. . .. . . . . . . . .. .. . . . . . . . . . . . . . . ... . . . . ......... .. . . ..... . .. . .. . . . ........ ........ . .. . .. . .. ..... . .. . .. . . . .. .. . . .. .. . . ... . ... . .... . . .. . .. ...... ...... .. . . . .. ........ .
lowQualScore : 0 5 0 0 00 0 0 0 5 5 2 2 0 0 0 22 6666666666666 8 8 7 4 7 77 4 1111 000 4 3 7 33 7 00 9 4 4 1 4 4 0 11 11 6 9 4 4 4 1 0 0 0 0 0 0 0 6 888 9 4 4 0 666666666 11 5 1 55555 0 11 4 11 4 9 9 88888888 33333333 9 33 4 33 4 11 99999 4 11 3 99 0 0 0 99 99 0 0 99 55 0 2 888 4 888 0 4444 4 4 11 9 66 000000 888888 11 0 4 4 11 44444444 4
consensus : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
Reference ( family-6140 ) : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|1 : TTTTTTTAATTTCTGTAGATA-TGTGCCCAATTTT-TTATT--GAATGACCTAAATTTGACCTATTTTTCTTCAAATATTCGGCCCCCAAA-TATTATGAGGTCACTGAA-CGTTTAAA-TTTAACTTTCAAAAACCC-CCCAATGATATAT---------------TGTATCTTTTTCAAACCATCTTATTTCGTAAGTAAATATTCTAATCATTTAATATTTTTAAAGAATATATCGGGGATACATACAACCCAAACTGCCAACTG----ATGTCAAATTACGC---AT-GGGGGTAGGGTTATAGAATGTGCAATTACTCT-TAAATATAGGTTA-GA-TTTTTTTTTAATT--TCTGTAAATAAAAGC-AAGAT-GATTAC-TTCATATTTCGTTAGTTTCTTTGTTA--AAATTGAACAAT--ACATTTTTTTTAATTTACTGGAGGTAA-TGTG-TC-ATTTTTCATATTC-CA-GA-AAGACC-GAAATTTTGACCTACTTTCTTC-AAATATCAAGCCCACAAAATAT---CAT-AGGTC-ATTT-GAAACGTT---TCCA--ATTTCA-CTTAAAAAACA-----ATGCAT--ATATGTCA--TCCCTGTTCAAACC-TTTTATTACGTGTC-TTA---AAAAA--AA--TTATCAT---ATA-TTTTTTT-AA-GAATATA--CGGGCTATTTA-C-AGGCTTA-TTTTCTGCATGA-CGAAAAAATCATAAAAAATTTG-AAGAGT-TTGGACTGGCAACCTAC--GAAA-AAAA-CG--CTTGGTTAAATT-TCTTTGGAAT---TTCGAC--CAA-AAC-ATTGTA-TTA-TTA--CACTATTAATT-T-----TTTC------CAA--TTATGAAGAAAATTGAAC-ATGG--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTAC
gi|10 : tacaAAAACT-TA--CATTTAAAATTTTAAAAGAA--TATC-GGGTTACATACAAGCCAAAATGCCAA-TG----ACGTCAA--TACGCTAAAT---GGGTAGGAAATTTAAAT-TCAAATTA--CCGTAAAA--AGGTT--AA-GATACTTCATATT--CCTAT
gi|10 : atTTCAAATT--ACCGTAAA--AAGGTTAAGAT-----AC-TTCATATTCCTAT-GCCT-TTTGTAAATAAAT--AACGATTAGC-----TTTTAT-TTACTCAGAGTAG-TG----CA---TTTCATA-TC-TA-GC-AAGACCAGAAA---TGACCCATTTCATTCAAAACACC--GCTCC--AAACA-----AT-GGTTCAA-CC-GACACGgccttttgtaaataaataacgattagcttttatttactcagagtagtgcatttcatatctagcaagaccagaaatgacccatttcattcaaaacaccgctccaaacaatggttcaaccgacacg
gi|11 : ataaaacttacatttaaaattttaaaagaatatcgggttacatacaagccaaaatgccaatgacgtcaatacgctaaatgggtaggaaatttaaaT--ATATGT-A--TTCTTG-TCAAACCATTTTATT-CTTATG-AA----AAAAA--AA--T-ATCATTTAATATTTTGTA--AA-GGATATA-TCGGG-TA--TA-T-AGGTTTATTTTTCTGCATGA-CG--GAAATCATAAAA
gi|12 : GCCCCCAAAATATCATTAGGTCACTAAAACGGTTCAATTTCA-CTTAAAAAAAAAAACCCAATGATATACATG----TG----TATGCATCCTTTTCAAACCATCTTATT-CG
gi|13 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCGTATTGCGTTAGTTT-TTTGTCA--AAATTAAACGAT--ACATTTTTTTTAA-TTACTAGAGGTAA-TGTG-TCAAT
gi|14 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCATATTCCGTTAGTTT-TTTGTCA--AAATTAAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAA
gi|15 : -TTA-CCT--CACTATCAATT------AATTT------TGAACTTATGAAGAAAATTGAACTAT-AATGG----AA--AAAAGGGGGTAAG-GTTAGACTACTACCTT
gi|16 : tAGGGGGTAGG-GTGTGACTACTACCTT
gi|2 : TTTTTTTTATTTCTGTAGGTAATGTGCC-AATTTTGTTATTTCGAAGAACCGAAATTTCACCTATTTT-CTTCAAATAT-CAGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TA-GTATCCTTT-CAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGG-TTACAT-CAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAAT-TGCAATTACTCTTTAAGAATAGGTT--GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACATTTGTT--AA-TTACTGGAGGTAA--GTGTTCAATTTTTCATATTC-TATGA-AAGACC-GAAA-TTTGACCTAC-TTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--AAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--G-AAAA-CG--CTTGGGTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTA-TAATT-TAA--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTTGGACTACTACCTTaataa
gi|3 : acattAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAGAATAGGTTA-GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACA--TTTGTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--T--C--GGCTTATTTTTCTGCATGA-C---GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|4 : -TTTA-CTTTTAAAAAAA----CAATGATATACAAAAAGGCGAAGTTATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAGTTTTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTGCGC---ATGGGGGGTAGGGTAATTTTATGTGCAATTACTCTGTAAAAATAGGTTTAGATTTTTTTTTAAATT--TCTGTAAATG-AAGC-AGGAT-GATTACTTTCATCTTCCTTTAGTTT-TTTGTTA--AAATTGAACGAT--ACA-TTTTTTAAA-TTACTGGAGGTAA-TGTG-TCAA-TTTTCATATTCTTA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCAAAAATAT---C-T-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTT--AAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CCTGCTGTTGTAAAAAAA--AA--TTATCATTTAATTTTTTTTTA-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-TG--GAAATCAT-AAAA--TTG-AAGAGT-TT-GACTAGCAACCTAC--G--A-AAAA--G--CTTGGTTGAATT-TCTTTGAAAT---TT-GA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-AT-TATTC------GAA--TTATGAAGACAATTGAAC-AT-G--GG----GGATAAAAGGGGGTAGG-GTGTGACTACTACCT
gi|5 : TA-TCATTTAATATTCTTTAAGAATATATCAGGGTTACATACAA-CCAAATTGCCAACTGCATGACGTCAAATTATGC---ATGGGGG-TAGAGTAATAGAATGTGCATTTACTCTGTAAAAATAGGTT--AG-TTTTTTTTAA-TT--TCTGTAAATGAAAGC-AG---------C-TTCATATTCCTTTAGTTT-TTCGTTA--AAATTGAACGAT--GCATTTTTT--AA-TTACTGGAGGTAAATGTG-TCATTTCTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CT-GAAACGT-------A--A---------AAAAAAC-------------------------CC--------ACCATTTTATT-CGTGTG-T------AAAA--AT--TTAACATTTAATATTTTTTTTAAA-GAATATA-TCGGG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--CTG-AAGAGT-TT-GG-----AATTT-C--G--ACAAAA-CG--------TGTATT------------------A---CCA-CAC-----TA-TTA---A--T-TTAT--ATT-C-C--AATT---------A--TGAAGAAAA---TTGAAC-AT-G--GG----GA--AAAA
gi|6 : tgtTTC-TA-GATAAGATC-GAA--TTTGACCTACTTTCTTC-AA-TATC-AGCCCC---AATACAAACAT-AGGTC-A-CTTGAAACTTG---T-CA--ATTTCATCTTTAAAAACATAACCAGG-ATTTATATGT-A--TCCTTG-TCAAACCATTTTATTCCGTG----T----AAAAAGGAACTTCATCATTTAATATTTTTTAT--A-GAATATA--CGAG-TA--TAGCGGGGCTTATTTTTCTGGCTGAGTG--GAACTCAT-AAAA--TTG-AAGAGTATT-GACTGGCAACCTACGGG--A-AAAACCGGCCTTGGTTGCATTGTCTTTTGCACATATTTGA---CCA-AACAA-TGTA-TTACCCACCCACTATAGCTTCT-ACTATTTC------CAA---TATG-AGAAAAT--AAG-AT-G--GGCGAAAA--AAAAGGGGATAGGAGCGTGACCACTACCT
gi|7 : gttcacatcctcctatT-CGTAAATAAAACTTTTA--CATTTAATATTTTTAAAGAATATATCGGGGTTACATACAG-CCAAATTGCCAACTG----ACGTCAAATTACGC---AT-GGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--AG-ATTACTTCATATT--CCTATA
gi|7 : AATTACTCTGTAAA----AAT-AGGTTAGATTAC-TTCATATTCCTATACCTT-TTTGTAA--AAAATTAACGAT--GCATTTTTTTTA--CTACTAGAGGTAA-TGTG-CCTATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCCATTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CC-GAAACGTT---T-CT--ATTcctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|8 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcT-GAAATGTTAGGT-CGTTATTTCG-CTTGAAAA-CA-----ATG-AT--ATATGT-A--TCCTTT-GCAAACCATTT-ATT-CGTGT----------------G--TAATTTTTTAAAA---------AA-GAATACA-TCGGG-TA--TT-C-GAGCTTATTTTTCTGCATTA-CA--GAAATCATAAAAA--TTG-AAGAGA-TT-GACTGGCAACTTAC--G--A-AAAG-CG--CTTTGTTAAATT-TCTTTGGAAT---TTCAG---CAT-GAC-G-TGTA-TTG-CCA--CAAAATTAATT-T-A--TCTTC------CAA--TTATGAAGAAAATTGAAC-TT-G--AG----G------AGGGGGTAGG-GTGAGACTACT
gi|9 : ATAT---CGA-ATGTA-A-TT--AGGCGTT---T-------TTCG-CTTTGAA--TA-----ATG-AT--ATATGT-AACTCCT-G-TTGCACC---TTATG-CGTGTT----------------------------GTATTTTTTTA-AAAGAATTTACTTTTG-TA--TT-T-CGGCTTATTTTTCTGCATTA-CG----AATCAT-ATAA--TTGTGAGATA-TT-GACTG--AGATTAC--G--A-AAAG-CGT-CTTTGTT--ATT-T-TTTGGTAT---TTCGGCTTCAGTAAC-G--GTACTTG-CCA--C-CTA--AAAT-T-C--AATTCGTTCTTCCA--TTG-GAAG-TAATTGA---AT-G--GG------------GGGGGTTGG-GTATG--TACT-CCT
Alignments
lowQualScore : 1 1 1 11 1 1 11 4444444444444 11 1 1111 111 1 11 11111 33333333 11111 11 111 1111 222222 111111 11111111
lowQualScore : 1 5 5 5 88 1 1 1 5 5 3 3 8 8 1 11 5555555555555 0 0 6 1 3 00 1 2222 000 1 4 0 99 5 55 1 4 4 2 4 4 1 66 66 4 1 4 4 4 0 5 5 5 5 5 5 5 5 777 8 4 4 4 888888888 88 5 0 22222 5 66 4 66 4 1 8 33333333 77777777 1 99 4 66 4 66 11111 4 66 7 66 5 5 5 66 66 5 5 11 00 5 0 888 5 333 5 6666 4 4 66 1 55 222222 222222 66 2 4 4 66 55555555 4
lowQualScore : . . . . .. . . . . . . . . . . .. ............. . . . . . .. . .... ... . . . .. . .. . . . . . . . .. .. . . . . . . . . . . . . . . ... . . . . ......... .. . . ..... . .. . .. . . . ........ ........ . .. . .. . .. ..... . .. . .. . . . .. .. . . .. .. . . ... . ... . .... . . .. . .. ...... ...... .. . . . .. ........ .
lowQualScore : 0 5 0 0 00 0 0 0 5 5 2 2 0 0 0 22 6666666666666 8 8 7 4 7 77 4 1111 000 4 3 7 33 7 00 9 4 4 1 4 4 0 11 11 6 9 4 4 4 1 0 0 0 0 0 0 0 6 888 9 4 4 0 666666666 11 5 1 55555 0 11 4 11 4 9 9 88888888 33333333 9 33 4 33 4 11 99999 4 11 3 99 0 0 0 99 99 0 0 99 55 0 2 888 4 888 0 4444 4 4 11 9 66 000000 888888 11 0 4 4 11 44444444 4
consensus : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
Reference ( family-6140 ) : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|1 : TTTTTTTAATTTCTGTAGATA-TGTGCCCAATTTT-TTATT--GAATGACCTAAATTTGACCTATTTTTCTTCAAATATTCGGCCCCCAAA-TATTATGAGGTCACTGAA-CGTTTAAA-TTTAACTTTCAAAAACCC-CCCAATGATATAT---------------TGTATCTTTTTCAAACCATCTTATTTCGTAAGTAAATATTCTAATCATTTAATATTTTTAAAGAATATATCGGGGATACATACAACCCAAACTGCCAACTG----ATGTCAAATTACGC---AT-GGGGGTAGGGTTATAGAATGTGCAATTACTCT-TAAATATAGGTTA-GA-TTTTTTTTTAATT--TCTGTAAATAAAAGC-AAGAT-GATTAC-TTCATATTTCGTTAGTTTCTTTGTTA--AAATTGAACAAT--ACATTTTTTTTAATTTACTGGAGGTAA-TGTG-TC-ATTTTTCATATTC-CA-GA-AAGACC-GAAATTTTGACCTACTTTCTTC-AAATATCAAGCCCACAAAATAT---CAT-AGGTC-ATTT-GAAACGTT---TCCA--ATTTCA-CTTAAAAAACA-----ATGCAT--ATATGTCA--TCCCTGTTCAAACC-TTTTATTACGTGTC-TTA---AAAAA--AA--TTATCAT---ATA-TTTTTTT-AA-GAATATA--CGGGCTATTTA-C-AGGCTTA-TTTTCTGCATGA-CGAAAAAATCATAAAAAATTTG-AAGAGT-TTGGACTGGCAACCTAC--GAAA-AAAA-CG--CTTGGTTAAATT-TCTTTGGAAT---TTCGAC--CAA-AAC-ATTGTA-TTA-TTA--CACTATTAATT-T-----TTTC------CAA--TTATGAAGAAAATTGAAC-ATGG--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTAC
gi|10 : tacaAAAACT-TA--CATTTAAAATTTTAAAAGAA--TATC-GGGTTACATACAAGCCAAAATGCCAA-TG----ACGTCAA--TACGCTAAAT---GGGTAGGAAATTTAAAT-TCAAATTA--CCGTAAAA--AGGTT--AA-GATACTTCATATT--CCTAT
gi|10 : atTTCAAATT--ACCGTAAA--AAGGTTAAGAT-----AC-TTCATATTCCTAT-GCCT-TTTGTAAATAAAT--AACGATTAGC-----TTTTAT-TTACTCAGAGTAG-TG----CA---TTTCATA-TC-TA-GC-AAGACCAGAAA---TGACCCATTTCATTCAAAACACC--GCTCC--AAACA-----AT-GGTTCAA-CC-GACACGgccttttgtaaataaataacgattagcttttatttactcagagtagtgcatttcatatctagcaagaccagaaatgacccatttcattcaaaacaccgctccaaacaatggttcaaccgacacg
gi|11 : ataaaacttacatttaaaattttaaaagaatatcgggttacatacaagccaaaatgccaatgacgtcaatacgctaaatgggtaggaaatttaaaT--ATATGT-A--TTCTTG-TCAAACCATTTTATT-CTTATG-AA----AAAAA--AA--T-ATCATTTAATATTTTGTA--AA-GGATATA-TCGGG-TA--TA-T-AGGTTTATTTTTCTGCATGA-CG--GAAATCATAAAA
gi|12 : GCCCCCAAAATATCATTAGGTCACTAAAACGGTTCAATTTCA-CTTAAAAAAAAAAACCCAATGATATACATG----TG----TATGCATCCTTTTCAAACCATCTTATT-CG
gi|13 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCGTATTGCGTTAGTTT-TTTGTCA--AAATTAAACGAT--ACATTTTTTTTAA-TTACTAGAGGTAA-TGTG-TCAAT
gi|14 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCATATTCCGTTAGTTT-TTTGTCA--AAATTAAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAA
gi|15 : -TTA-CCT--CACTATCAATT------AATTT------TGAACTTATGAAGAAAATTGAACTAT-AATGG----AA--AAAAGGGGGTAAG-GTTAGACTACTACCTT
gi|16 : tAGGGGGTAGG-GTGTGACTACTACCTT
gi|2 : TTTTTTTTATTTCTGTAGGTAATGTGCC-AATTTTGTTATTTCGAAGAACCGAAATTTCACCTATTTT-CTTCAAATAT-CAGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TA-GTATCCTTT-CAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGG-TTACAT-CAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAAT-TGCAATTACTCTTTAAGAATAGGTT--GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACATTTGTT--AA-TTACTGGAGGTAA--GTGTTCAATTTTTCATATTC-TATGA-AAGACC-GAAA-TTTGACCTAC-TTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--AAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--G-AAAA-CG--CTTGGGTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTA-TAATT-TAA--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTTGGACTACTACCTTaataa
gi|3 : acattAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAGAATAGGTTA-GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACA--TTTGTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--T--C--GGCTTATTTTTCTGCATGA-C---GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|4 : -TTTA-CTTTTAAAAAAA----CAATGATATACAAAAAGGCGAAGTTATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAGTTTTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTGCGC---ATGGGGGGTAGGGTAATTTTATGTGCAATTACTCTGTAAAAATAGGTTTAGATTTTTTTTTAAATT--TCTGTAAATG-AAGC-AGGAT-GATTACTTTCATCTTCCTTTAGTTT-TTTGTTA--AAATTGAACGAT--ACA-TTTTTTAAA-TTACTGGAGGTAA-TGTG-TCAA-TTTTCATATTCTTA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCAAAAATAT---C-T-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTT--AAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CCTGCTGTTGTAAAAAAA--AA--TTATCATTTAATTTTTTTTTA-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-TG--GAAATCAT-AAAA--TTG-AAGAGT-TT-GACTAGCAACCTAC--G--A-AAAA--G--CTTGGTTGAATT-TCTTTGAAAT---TT-GA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-AT-TATTC------GAA--TTATGAAGACAATTGAAC-AT-G--GG----GGATAAAAGGGGGTAGG-GTGTGACTACTACCT
gi|5 : TA-TCATTTAATATTCTTTAAGAATATATCAGGGTTACATACAA-CCAAATTGCCAACTGCATGACGTCAAATTATGC---ATGGGGG-TAGAGTAATAGAATGTGCATTTACTCTGTAAAAATAGGTT--AG-TTTTTTTTAA-TT--TCTGTAAATGAAAGC-AG---------C-TTCATATTCCTTTAGTTT-TTCGTTA--AAATTGAACGAT--GCATTTTTT--AA-TTACTGGAGGTAAATGTG-TCATTTCTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CT-GAAACGT-------A--A---------AAAAAAC-------------------------CC--------ACCATTTTATT-CGTGTG-T------AAAA--AT--TTAACATTTAATATTTTTTTTAAA-GAATATA-TCGGG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--CTG-AAGAGT-TT-GG-----AATTT-C--G--ACAAAA-CG--------TGTATT------------------A---CCA-CAC-----TA-TTA---A--T-TTAT--ATT-C-C--AATT---------A--TGAAGAAAA---TTGAAC-AT-G--GG----GA--AAAA
gi|6 : tgtTTC-TA-GATAAGATC-GAA--TTTGACCTACTTTCTTC-AA-TATC-AGCCCC---AATACAAACAT-AGGTC-A-CTTGAAACTTG---T-CA--ATTTCATCTTTAAAAACATAACCAGG-ATTTATATGT-A--TCCTTG-TCAAACCATTTTATTCCGTG----T----AAAAAGGAACTTCATCATTTAATATTTTTTAT--A-GAATATA--CGAG-TA--TAGCGGGGCTTATTTTTCTGGCTGAGTG--GAACTCAT-AAAA--TTG-AAGAGTATT-GACTGGCAACCTACGGG--A-AAAACCGGCCTTGGTTGCATTGTCTTTTGCACATATTTGA---CCA-AACAA-TGTA-TTACCCACCCACTATAGCTTCT-ACTATTTC------CAA---TATG-AGAAAAT--AAG-AT-G--GGCGAAAA--AAAAGGGGATAGGAGCGTGACCACTACCT
gi|7 : gttcacatcctcctatT-CGTAAATAAAACTTTTA--CATTTAATATTTTTAAAGAATATATCGGGGTTACATACAG-CCAAATTGCCAACTG----ACGTCAAATTACGC---AT-GGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--AG-ATTACTTCATATT--CCTATA
gi|7 : AATTACTCTGTAAA----AAT-AGGTTAGATTAC-TTCATATTCCTATACCTT-TTTGTAA--AAAATTAACGAT--GCATTTTTTTTA--CTACTAGAGGTAA-TGTG-CCTATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCCATTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CC-GAAACGTT---T-CT--ATTcctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|8 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcT-GAAATGTTAGGT-CGTTATTTCG-CTTGAAAA-CA-----ATG-AT--ATATGT-A--TCCTTT-GCAAACCATTT-ATT-CGTGT----------------G--TAATTTTTTAAAA---------AA-GAATACA-TCGGG-TA--TT-C-GAGCTTATTTTTCTGCATTA-CA--GAAATCATAAAAA--TTG-AAGAGA-TT-GACTGGCAACTTAC--G--A-AAAG-CG--CTTTGTTAAATT-TCTTTGGAAT---TTCAG---CAT-GAC-G-TGTA-TTG-CCA--CAAAATTAATT-T-A--TCTTC------CAA--TTATGAAGAAAATTGAAC-TT-G--AG----G------AGGGGGTAGG-GTGAGACTACT
gi|9 : ATAT---CGA-ATGTA-A-TT--AGGCGTT---T-------TTCG-CTTTGAA--TA-----ATG-AT--ATATGT-AACTCCT-G-TTGCACC---TTATG-CGTGTT----------------------------GTATTTTTTTA-AAAGAATTTACTTTTG-TA--TT-T-CGGCTTATTTTTCTGCATTA-CG----AATCAT-ATAA--TTGTGAGATA-TT-GACTG--AGATTAC--G--A-AAAG-CGT-CTTTGTT--ATT-T-TTTGGTAT---TTCGGCTTCAGTAAC-G--GTACTTG-CCA--C-CTA--AAAT-T-C--AATTCGTTCTTCCA--TTG-GAAG-TAATTGA---AT-G--GG------------GGGGGTTGG-GTATG--TACT-CCT
blockSeqs : T A . G TC G G C . . A A T . A AA AAAAAGGCGAAGT . T C T G CATG TAA G G TA T AC T T A A T . A AT TA T T . A T T T T A . A . C AAA G A . T AGGTCGTT AT A TAACC . TT . AC . A C TGTTGTAA GGAACTTC T TA A CT . . AGCGG G . A . T A . GG . C C GC G ATA T CTT T AAT C C CC A TC CTACT GTTCTT AC A T . AT CGAAAA A
blockSeqs : A A . . A AA ATGTG . T C T . . . G G A . . T . . A . . C . . T T . . . . . . . . . . C . G . . . TCA A A . . . . . . A . GAA AATG T T . T . . ATA . . A . . . . . . . . T . . T . . AT . . . A TT TAA . . A . . . GGAT .
blockSeqs : A A . . A AA ATG . A T T . . . G G . . . T . . T . . C . . T T . . . . . . . . . . A . . . . . TCA A A . . . . . . A . TTT AATG T T . T . . ACA . . A . . . . . . . . . . . T . . AT . . . A TT TAT . . A . . . AA .
blockSeqs : . . T . ATG . A T T . . . G G . . . T . . T . . A . . T T . . . . . . . . . . C . . . . . TCA A T . . . . . . A . TTT AATT T A . T . . ACA . . A . . . . . . . . . . . C . . AT . . . A TA TA . . C . . . GA .
blockSeqs : . . . . . . . . . . . T . . T . . A . . T T . . . . . . . . . . C . . . . . TCA G G . . . . . . A . GT ATTT T T . T . . ACA . . A . . . . . . . . . . . C . . GT . . . A TT CC . . A . . . GA .
blockSeqs : . . . . . . . . . T . . T . . T . . . T . . . . . . . . . . . . . . . . TCT G T . . . . . . A . T AAT T A . T . . TCG . . . . . . . . . . . . . . . . . G . . . A T TA . . A . . . GA .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . . . . . . . . A . . . . . . . . A . T GTA T . . T . . TTC . . . . . . . . . . . . . . . . . . . . . . T TC . . T . . . G .
blockSeqs : . . . . . . . A . . . . . . . . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : AA ACG********** T* ** TCA****** T******* T* ** ** ** ** *** AT** TA****
originalCons : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-TT----AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
finalCons : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACACG----------TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTAT-CATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTTTCA------ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTT-------AAAAA--AA--TNATCATTTAATATTTTTTTT-AA-GAATATAT-CGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AACAT--GTA-TTA-CCA--CACTATTAATTTA----AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
Alignments
lowQualScore : 1 1 1 11 1 1 11 5555555555555 11 1 1111 111 1 11 1 11111 33333333333 11111 11 111 1111 222222 111111 11111111
lowQualScore : 1 5 5 5 88 1 1 1 5 5 3 3 8 8 1 11 1111111111111 0 0 6 1 3 00 1 2222 000 1 4 0 99 5 55 1 4 4 2 4 4 1 66 66 0 4 4 4 0 5 5 5 5 5 5 5 5 777 8 4 4 4 888888888 88 5 0 22222 5 66 4 66 4 1 8 77777777777 777 2 7 66 4 66 4 66 11111 4 66 7 66 5 5 5 66 66 5 5 11 00 5 0 888 5 333 5 1111 4 4 66 1 55 222222 222222 66 2 4 4 66 55555555 4
lowQualScore : . . . . .. . . . . . . . . . . .. ............. . . . . . .. . .... ... . . . .. . .. . . . . . . . .. .. . . . . . . . . . . . . . ... . . . . ......... .. . . ..... . .. . .. . . . ........... ... . . .. . .. . .. ..... . .. . .. . . . .. .. . . .. .. . . ... . ... . .... . . .. . .. ...... ...... .. . . . .. ........ .
lowQualScore : 0 5 0 0 00 0 0 0 5 5 2 2 0 0 0 22 4444444444444 8 8 7 4 7 77 4 1111 000 4 3 7 33 7 00 9 4 4 1 4 4 0 11 11 0 4 4 4 1 0 0 0 0 0 0 0 6 888 9 4 4 0 666666666 11 5 1 55555 0 11 4 11 4 9 9 99999999999 888 6 3 88 4 33 4 11 99999 4 11 3 99 0 0 0 99 99 0 0 99 55 0 2 888 4 888 0 0000 4 4 11 9 66 000000 888888 11 0 4 4 11 44444444 4
consensus : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTG--TN-------AAAAAAA---TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-G-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
Reference ( family-6140 ) : NNNNNTTTTTTTNATTTCTGTAGGTAATGTGCCCAATTTTGTTATTTCGAANGACCNAAATTTNACCTATTTTTCTTCAAATATTCGGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------CG----TATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--GA-TTTTTTTCAAATT--TCTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTTGTNA--AAATTGAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCG-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTG--TT-------AAAAAAA---TNATCATTTAATATTTTTTTT-AA-GAATATA-TCGGG-TA--TA-C-GGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTCGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|1 : TTTTTTTAATTTCTGTAGATA-TGTGCCCAATTTT-TTATT--GAATGACCTAAATTTGACCTATTTTTCTTCAAATATTCGGCCCCCAAA-TATTATGAGGTCACTGAA-CGTTTAAA-TTTAACTTTCAAAAACCC-CCCAATGATATAT---------------TGTATCTTTTTCAAACCATCTTATTTCGTAAGTAAATATTCTAATCATTTAATATTTTTAAAGAATATATCGGGGATACATACAACCCAAACTGCCAACTG----ATGTCAAATTACGC---AT-GGGGGTAGGGTTATAGAATGTGCAATTACTCT-TAAATATAGGTTA-GA-TTTTTTTTTAATT--TCTGTAAATAAAAGC-AAGAT-GATTAC-TTCATATTTCGTTAGTTTCTTTGTTA--AAATTGAACAAT--ACATTTTTTTTAATTTACTGGAGGTAA-TGTG-TC-ATTTTTCATATTC-CA-GA-AAGACC-GAAATTTTGACCTACTTTCTTC-AAATATCAAGCCCACAAAATAT---CAT-AGGTC-ATTT-GAAACGTT---TCCA--ATTTCA-CTTAAAAAACA-----ATGCAT--ATATGTCA--TCCCTGTTCAAACC-TTTTATTACGTG--TCTTA----AAAAAAA---TTATCAT---ATA-TTTTTTT-AA-GAATATA--CGGGCTATTTA-C-AGGCTTA-TTTTCTGCATGA-CGAAAAAATCATAAAAAATTTG-AAGAGT-TTGGACTGGCAACCTAC--GAAA-AAAA-CG--CTTGGTTAAATT-TCTTTGGAAT---TTCGAC--CAA-AAC-ATTGTA-TTA-TTA--CACTATTAATT-T-----TTTC------CAA--TTATGAAGAAAATTGAAC-ATGG--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTAC
gi|10 : tacaAAAACT-TA--CATTTAAAATTTTAAAAGAA--TATC-GGGTTACATACAAGCCAAAATGCCAA-TG----ACGTCAA--TACGCTAAAT---GGGTAGGAAATTTAAAT-TCAAATTA--CCGTAAAA--AGGTT--AA-GATACTTCATATT--CCTAT
gi|10 : atTTCAAATT--ACCGTAAA--AAGGTTAAGAT-----AC-TTCATATTCCTAT-GCCT-TTTGTAAATAAAT--AACGATTAGC-----TTTTAT-TTACTCAGAGTAG-TG----CA---TTTCATA-TC-TA-GC-AAGACCAGAAA---TGACCCATTTCATTCAAAACACC--GCTCC--AAACA-----AT-GGTTCAA-CC-GACACGgccttttgtaaataaataacgattagcttttatttactcagagtagtgcatttcatatctagcaagaccagaaatgacccatttcattcaaaacaccgctccaaacaatggttcaaccgacacg
gi|11 : ataaaacttacatttaaaattttaaaagaatatcgggttacatacaagccaaaatgccaatgacgtcaatacgctaaatgggtaggaaatttaaaT--ATATGT-A--TTCTTG-TCAAACCATTTTATT-CTTA--TGA------AAAAAAA---ATATCATTTAATA-TTTTGTA-AA-GGATATA-TCGGG-TA--TA-T-AGGTTTATTTTTCTGCATGA-CG--GAAATCATAAAA
gi|12 : GCCCCCAAAATATCATTAGGTCACTAAAACGGTTCAATTTCA-CTTAAAAAAAAAAACCCAATGATATACATG----TG----TATGCATCCTTTTCAAACCATCTTATT-CG
gi|13 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCGTATTGCGTTAGTTT-TTTGTCA--AAATTAAACGAT--ACATTTTTTTTAA-TTACTAGAGGTAA-TGTG-TCAAT
gi|14 : T--TCTGTAAATGAAAGC-TGGAT-GATAAC-TCCATATTCCGTTAGTTT-TTTGTCA--AAATTAAACGAT--GCATTTTTTTTAA-TTACTGGAGGTAA-TGTG-TCAA
gi|15 : -TTA-CCT--CACTATCAATT------AATTT------TGAACTTATGAAGAAAATTGAACTAT-AATGG----AA--AAAAGGGGGTAAG-GTTAGACTACTACCTT
gi|16 : tAGGGGGTAGG-GTGTGACTACTACCTT
gi|2 : TTTTTTTTATTTCTGTAGGTAATGTGCC-AATTTTGTTATTTCGAAGAACCGAAATTTCACCTATTTT-CTTCAAATAT-CAGCCCCCAAAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TA-GTATCCTTT-CAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGG-TTACAT-CAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAAT-TGCAATTACTCTTTAAGAATAGGTT--GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACA--TTTGTTAA-TTACTGGAGGTAA--GTGTTCAATTTTTCATATTC-TATGA-AAGACC-GAAA-TTTGACCTAC-TTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTTTT-------AAAAAAA---TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--AAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--G-AAAA-CG--CTTGGGTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTA-TAATT-TAA--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTTGGACTACTACCTTaataa
gi|3 : acattAATATCATGAGGTCACTGAAACGTTTCAA-TTCA-CTTTAAAAAAAAAACCCGATGATATACA------TG----TATGTATCCTTTTCAAACCATCTTATT-CGTATGTAAAAATTCTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTACGC---ATGGGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAGAATAGGTTA-GA-TTTTTTTCAAATT--TGTGTAAATGAAAGC-AGGAT-GATTAC-TTCATATTCCTTTAGTTT-TTGGTAA--AAATTGAACGAT--ACA--TTTGTTAA-TTACTGGAGGTAA-TGTG-TCAATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CAT-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTTAAAAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CGTGTTTT-------AAAAAAA---TGATCATTTAATATTTTTTTT-AA-GAATATA-TCGAG-TA--T--C--GGCTTATTTTTCTGCATGA-C---GAAATCATAAAAA--TTG-AAGAGT-TT-GACTGGCAACCTAC--G--A-AAAA-CG--CTTGGTTGAATT-TCTTTGGAAT---TTTGA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-A--AATTC------CAA--TTATGAAGAAAATTGAAC-AT-G--GG----GA--AAAAGGGGGTAGG-GTGTGACTACTACCTT
gi|4 : -TTTA-CTTTTAAAAAAA----CAATGATATACAAAAAGGCGAAGTTATGTATCCTTTTCAAACCATCTTATT-CGTAAGTAAAAGTTTTA-TCATTTAATATTTTTAAAGAATATATCGGGGTTACATACAA-CCAAATTGCCAACTG----ACGTCAAATTGCGC---ATGGGGGGTAGGGTAATTTTATGTGCAATTACTCTGTAAAAATAGGTTTAGATTTTTTTTTAAATT--TCTGTAAATG-AAGC-AGGAT-GATTACTTTCATCTTCCTTTAGTTT-TTTGTTA--AAATTGAACGAT--ACA-TTTTTTAAA-TTACTGGAGGTAA-TGTG-TCAA-TTTTCATATTCTTA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCAAAAATAT---C-T-AGGTC-A-CT-GAAACGTT---T-CA--ATTTCA-CTT--AAAACA-----ATG-AT--ATATGT-A--TCCTTG-TCAAACCATTTTATT-CCTG--CTGTTGTAAAAAAAAA---TTATCATTTAATTTTTTTTTA-AA-GAATATA-TCGAG-TA--TA-C-AGGCTTATTTTTCTGCATGA-TG--GAAATCAT-AAAA--TTG-AAGAGT-TT-GACTAGCAACCTAC--G--A-AAAA--G--CTTGGTTGAATT-TCTTTGAAAT---TT-GA---CAA-AAC-A-TGTA-TTA-CCA--CACTATTAATT-T-AT-TATTC------GAA--TTATGAAGACAATTGAAC-AT-G--GG----GGATAAAAGGGGGTAGG-GTGTGACTACTACCT
gi|5 : TA-TCATTTAATATTCTTTAAGAATATATCAGGGTTACATACAA-CCAAATTGCCAACTGCATGACGTCAAATTATGC---ATGGGGG-TAGAGTAATAGAATGTGCATTTACTCTGTAAAAATAGGTT--AG-TTTTTTTTAA-TT--TCTGTAAATGAAAGC-AG---------C-TTCATATTCCTTTAGTTT-TTCGTTA--AAATTGAACGAT--GCATTTTTT--AA-TTACTGGAGGTAAATGTG-TCATTTCTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCTACTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CT-GAAACGT-------A--A---------AAAAAAC-------------------------CC--------ACCATTTTATT-CGTG--TG-------TAAAAAT---TTAACATTTAATATTTTTTTTAAA-GAATATA-TCGGG-TA--TA-C-AGGCTTATTTTTCTGCATGA-CG--GAAATCATAAAAA--CTG-AAGAGT-TT-GG-----AATTT-C--G--ACAAAA-CG--------TGTATT------------------A---CCA-CAC-----TA-TTA---A--T-TTAT--ATT-C-C--AATT---------A--TGAAGAAAA---TTGAAC-AT-G--GG----GA--AAAA
gi|6 : tgtTTC-TA-GATAAGATC-GAA--TTTGACCTACTTTCTTC-AA-TATC-AGCCCC---AATACAAACAT-AGGTC-A-CTTGAAACTTG---T-CA--ATTTCATCTTTAAAAACATAACCAGG-ATTTATATGT-A--TCCTTG-TCAAACCATTTTATTCCGTG--TA-------AAAAGGAACTTCATCATTTAATATTTTTTAT--A-GAATATA--CGAG-TA--TAGCGGGGCTTATTTTTCTGGCTGAGTG--GAACTCAT-AAAA--TTG-AAGAGTATT-GACTGGCAACCTACGGG--A-AAAACCGGCCTTGGTTGCATTGTCTTTTGCACATATTTGA---CCA-AACAA-TGTA-TTACCCACCCACTATAGCTTCT-ACTATTTC------CAA---TATG-AGAAAAT--AAG-AT-G--GGCGAAAA--AAAAGGGGATAGGAGCGTGACCACTACCT
gi|7 : gttcacatcctcctatT-CGTAAATAAAACTTTTA--CATTTAATATTTTTAAAGAATATATCGGGGTTACATACAG-CCAAATTGCCAACTG----ACGTCAAATTACGC---AT-GGGGGTAGGGTAATAGAATGTGCAATTACTCTGTAAAAATAGGTT--AG-ATTACTTCATATT--CCTATA
gi|7 : AATTACTCTGTAAA----AAT-AGGTTAGATTAC-TTCATATTCCTATACCTT-TTTGTAA--AAAATTAACGAT--GCATTTTTTTTA--CTACTAGAGGTAA-TGTG-CCTATTTTTCATATTC-TA-GA-AAGACC-GAAA-TTTGACCCATTTTCTTC-AAATATC-AGCCCCCAAAATAT---CATGAGGTC-A-CC-GAAACGTT---T-CT--ATTcctttttgtaaaaaattaacgatgcattttttttactactagaggtaatgtgcctatttttcatattctagaaagaccgaaatttgacccattttcttcaaatatcagcccccaaaatatcatgaggtcaccgaaacgtttctatt
gi|8 : tcgtaaataaaacttttacatttaatatttttaaagaatatatcggggttacatacagccaaattgccaactgacgtcaaattacgcatgggggtagggtaatagaatgtgcT-GAAATGTTAGGT-CGTTATTTCG-CTTGAAAA-CA-----ATG-AT--ATATGT-A--TCCTTT-GCAAACCATTT-ATT-CGTG--T--------------G---TAATTTTTTAAAA---------AA-GAATACA-TCGGG-TA--TT-C-GAGCTTATTTTTCTGCATTA-CA--GAAATCATAAAAA--TTG-AAGAGA-TT-GACTGGCAACTTAC--G--A-AAAG-CG--CTTTGTTAAATT-TCTTTGGAAT---TTCAG---CAT-GAC-G-TGTA-TTG-CCA--CAAAATTAATT-T-A--TCTTC------CAA--TTATGAAGAAAATTGAAC-TT-G--AG----G------AGGGGGTAGG-GTGAGACTACT
gi|9 : ATAT---CGA-ATGTA-A-TT--AGGCGTT---T-------TTCG-CTTTGAA--TA-----ATG-AT--ATATGT-AACTCCT-G-TTGCACC---TTATG-CGTG--TT-------G--------------------TATTTTTTTA-AAAGAATTTACTTTTG-TA--TT-T-CGGCTTATTTTTCTGCATTA-CG----AATCAT-ATAA--TTGTGAGATA-TT-GACTG--AGATTAC--G--A-AAAG-CGT-CTTTGTT--ATT-T-TTTGGTAT---TTCGGCTTCAGTAAC-G--GTACTTG-CCA--C-CTA--AAAT-T-C--AATTCGTTCTTCCA--TTG-GAAG-TAATTGA---AT-G--GG------------GGGGGTTGG-GTATG--TACT-CCT