lowQualScore : 1 11 1 9999999 2222222 55555555 33333 22 222 11 33333333 11111 1 22222222 1
lowQualScore : 5 44 0 6 5 5 1 3333333 0 0000000 5 22222222 5 99999 33 888 000 3 5 11 11111111 5 6 66 77777 3 5 4 1 1 3 6 3 88888 1 3 44 3 3 3 3 3 33333333 1 7 3 3 0 3 3 3 44 55 4 0 7777 33 88 4
lowQualScore : . .. . . . . . ....... . ....... . ........ . ..... .. ... ... . . .. ........ . . .. ..... . . . . . . . . ..... . . .. . . . . . ........ . . . . . . . . .. .. . . .... .. .. .
lowQualScore : 0 33 7 5 7 7 4 3333333 4 8888888 0 77777777 0 99999 66 888 111 1 6 55 99999999 0 0 99 99999 4 0 0 6 4 3 7 3 33333 8 3 66 2 5 3 3 3 11111111 6 3 6 6 5 6 6 6 22 00 0 0 5555 99 77 0
consensus : TCACCGACTCCCAGTC-GAGACTGAAAGATGGTGTG-GCACT-CCAAAACATGAAAG-AATTTGCCATA-T---T-GTAAAACGAATCA-AATAGCTG-ATGAATATCAT-TG--TCTTGGTGAATGCCA---TTT-N-TTTGAAGAATGGCGAAAAAAG-TATCTGT----GTA-AAA-ATATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTTCC-GAATTATTGTCAACTGC-TG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAAT-AT-A-TGA------CCAAGTCTG-TCC-T-CCTTA-A-TTC-ATCTC-AG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
Reference ( gi|4 ) : TCACCGACTCCCAGTC-AAGACTGGAAGATGGTGTG-GCACT-CCAAAACA-------AATTTGCCACA-T---T-GTAAAACGAATCA-A-TAGGTGGATGAATATCAT-T---TCTT--TGAATGCCA---TTT-A-TTTAAAGACTGGCGAAAAAAG-TATCTGT----G---AGA-ATATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTTCC-GAATTATTGCCAACTGC-TG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTATTTTTATATCTAAAAT-AT-A-TGT------CCAAGTCTG-TCC-T-CCTTA-A-TTC-ATCTT-AG--TCATC-TTAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTGT
gi|3 : TCACCGACTCC-AGTCCAAGACTGAGAGATG-TGTGTGCACTTCCAAAACATGAGAGAAATTTGCCACA-T---T-GTAAAACGAATCA-AATAGCTG-ATGAATATCATGT---TCTTGGTGAATGCCA---TTT-A-TTTAAAGACTGGCGAAAAAAG-TATCTGT----G---AGA-ATATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTTCC-GAATTA-TGCCAA-TGC-TGAACTC-CAATGTACT-----TAT-AAAT-TGT--GTATTTTTATATCT---AT-AT-A-TGT-------CAAGTCTGTTCC-TGCCTTA-A-TTC-ATCTT-AG--TCATCTTTAAA---CTACTC--GCCTTTTCAACGTGTACCTTGTGT
gi|20 : TCACCGACTCCCAGTC-GAGACTGAAAGATGGTGTG-ACACT-CCAAAACa
gi|14 : aC-GAGATTGGAAGATGATGTG-GTACT-CCAAAACATGAGAG-AATCTGCCATA-TC--T-GTAAAACGAAACA-A-
gi|13 : GATGGTGTG-GCTCT-C------A-------AATT-GCTATA-TATCT-GTAAGACGATTAAGA-TAGCTG-ATTAATATCAT-TATATCTT--TGAATGCCAGGGTTT-T-TTTTAAGAATGGCGGAAAAAA-TGTTTGT----GTA-AAA-ATATTGTTAT--AAatcactatcgcctgtttatgcaaaccgaatcaaatagctgatggatatcat
gi|6 : GTG-GCACT-C-AAAACATAGAG--AATTTGCCACAGT---T-GTAAAACGAATCA-AATAGCTG-ATGAATATCAC-TGA-TCTTGGTGAATGCCA---TTTTA-TTTAAAGACTGGCGAAAAAAG-TATCTGT----G---AGA-ATATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTTCC-GAATTATTGCCAAATGC-TG-ACTC-CAATGTACT-----TAATAAAT-TGT--GTATTTTTATATCTAAAAT-AT-A-TGT-------CAAGT-TG-TCC-T-CCTTA-A-TTC-ATCTT-AG--TCATC-TTAAA---CTA--CT-GCCTTTTC-ACGTGTACCTTGTG
gi|5 : GTG-GCACT-C-AAAACATAGAG--AATTTGCCACAGT---T-GTAAAACGAATCA-AATAGCTG-ATGAATATCAC-TGA-TCTTGGTGAATGCCA---TTT-AATTTAAAGACTGGCGAAAAAAG-TATCTGT----G---AGA-ATATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTTCC-GAATTATTGCCAA-TGC-TGAACTC-CAATGTACT-----TATCAAATGTGT--GTATTTTTATATCTAAAATCAT-ATTGT-------CAAGT-TGTTCC-T-CCTTA-A-TTC-ATCTT-AG--TCATC-TTAAA---CTACTC--GCCTTTTC-ACGTGTACCTTGTG
gi|9 : G-GCACT-CCAAAACATGAAAG-AATTTACCATC-TC--T-GTAAAACGAATCA-AATAGCTT-ATGAATATCAT-TATATCTT--TGAATGCCA---GTT-T-TTTGAAGAATGGCGAAAAAAA-TATTTGT----GTACAAA-ATATTGTTAT--AAACCAAACTA------T-TACAAATTTTCT-GAATTATTGTCAACGGC-TG-ACTC-CAATGTACT-----TGTCAAGT-TGT--GTAGTTTTATATCCAAAAT-AT-A-TGA------CCAA
gi|1 : TTAGCCATA-T---TTGTAACACGAATCA-A-TA------TAA---TTAT-A---TCTT--GGAAGGCCA---GTT---TTTGAAGAATGGCGGAAAAACCTATCTGTTGTAG---AAAGATATTGTTATTGAAACCAAAC-----GTTT-AACAAATTTTCCCGAAT-ATT-TCAACTGCCTG-AATC-CAATGCAAC-----TAT-AAAT-TGTTGATAGTTTTATATCTTAAAT-AC-A-TGA------CCAAGTCTG-TCCTT-CCATA-ATTTC-ATTTTCAG--TCATC-TAAAA---TTCCTTTCGCTTTTTC-ACGTGTACCTTGT
gi|2 : TTGCCATA-T---TTGTGACACGAATCA-A-TA------TAA---TTAT-A---TCTT--TGAAGGCCA---GTT-T-TTTGAAGAATGGCGGAAAAAC-TATCTGT----GTA-AAA-ATATTGTTAT--AAACCAAAC-----GT-T-TACAAATTTTCC-GAATTATTGTCAACTGC-TG-AATC-CAATGCACC-----TATAAAAT-TGT--GTAGTTTTATATCTTAAAT-AT-A-TGA------CCAAGTCTG-TCC-T-CCATATA-TTC-ATTTC-AGAATCATC-TAAAATTTCCATTTC-GCTTTTTC-AGATGTACCTactattgtttcatttcctgtatatagaacctcatgtacattaaatggtgtctgagagaaataaactgacagaacttgaaag
gi|7 : ---TTT-T-TTTTAAGAATGGCGAAAAAA--TATCCGT----GTAAAAA-ATATTGTTAC--AAACCAAA------GTAT-TACAAATTTTCT-GAATTATTGTCAACGGC-TG-ACTC-CAATGTACT-----TGTCAGAT-TGT--GTAGTTTTATATCTAAAAT-AT-A-TGA------CCAAGTCTG-----T-CCTTG-A-TTC-ATCTC-AG--TCATC-T--GA---TT--TCT-G-CTTTTC-ATGTGTACCTCGTATattggtaaattgggtattcatatttgctatatagaacctcatgtatcattaaatggtgtgagagaaataaactgaacatgaacttgaa
gi|8 : TACATGTATCTA----TTAT----AATAACTGTCAACTGC-GG-ACTC-CAACGTACTGCACTTATCAAAT-GTT--GTAGTTTTATATCTAAAAT-AC-A-TGA------CCAAGTCTG-TCC-T-CCTTG-A-TTC-ATCTC-AG--TCATC-TAAAG---TTACTCT-GCGTTTTC-ACGTGTATCTTGTATattgtttcaatttgtatatattgtataagtggtgtgagagaaataaactgaactggactgaactatga
gi|10 : ATTTTCT-GAATTATTGTCAACTGC-TG-ACTC-CAATGTACT-----TGTCAAAT-TGT--GTAGTTTTATATCTAAAAT-AT-G-TGA------CCATGTCTG-TCC-T-CCTTG-A-TTC-ATCTC-AG--TCATC-TGAAA---TTATTCT-GCTTTTTC-ACGTGTACCTTGTATattgttccaatttgcatatattgtatatagaacctcatgcactattaagcggtgtgggagaaataatctgaacttgaactta
gi|15 : -GAATCATTATCAACTGC-TA-AGTG-CAATGTACT-----TCGCGAAA-TGT--GTA--GTTATATCTAAAAT-ACAA-TGTATACGATCAGGTCTG-TCC-T-CAATA-A-TTC-ATTTC-AA--TCattgtttcaacttgtatatattaaatatagaacctcatgtaccataaagtagtgtgagagaaataaactgaacttgaa
gi|11 : tTTATTGTCAACGGC-TG-ACTTACAAT-TACT-----TGTCAAAT-TGT--GTG-TTTTATATCT-AAAT-AT-A-TGA------CCAAGTTCT-TCC-T-CCTTG-A-TTCGATCTC-AG--TCA--------------------CTTTTTC-ACGTGTACCTTGTAT
gi|17 : -TG-ATTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAATGT-AT-A-Tattgtttcaatttgtatatattgggtatatagaacctcgtgttactattaaaagtgtgtgagagaaataaactgaacagattcttaaaat
gi|12 : -TCC-C-CCATA-A-TTC-ATCTC-AG--TCATC-GCAAG---TTACTCT-G-CTTTTC-ACATGTACCTTGTATctatatgaatctattatatctata
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TGTATATTGTTTAAATTTGTGTATATTGTATAGAGAACCTCATGTACAATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACCACCTG
Unaligned ( gi|18 ): TTTCAATCAGTATATTTTTTATACATGGTTTGAGTGTAATAAACTGAGCTGAACTGAAC
Unaligned ( gi|19 ): AAATAAAATAGTTATGACAAAAGTCTACGTATTTTTTGAACGGCCCTCG
Alignments
lowQualScore : 1 11 111 4444444444 111 22222 11111 1111111
lowQualScore : 6 0 8 5 8 22 3 0 5 8 555 8 8 88 1 4444444444 222 99 2 1 99 4 55555 4 1 66 00000 2 4 4 0 3 6 3 77777 0 3 44 2 0000000 3 2 0 6 3 3 3 3 3 3 44 3 2 6666 1 77 3
lowQualScore : . . . . . .. . . . . ... . . .. . .......... ... .. . . .. . ..... . . .. ..... . . . . . . . ..... . . .. . ....... . . . . . . . . . . .. . . .... . .. .
lowQualScore : 7 0 0 0 8 99 0 7 0 9 000 0 0 33 9 4444444444 222 88 7 7 11 4 00000 4 1 11 88888 0 4 0 4 3 2 1 77777 8 1 22 5 0000000 1 6 5 7 3 3 3 3 3 3 66 6 3 7777 2 11 6
consensus : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATTG-T--CTTGGTGAATGCCA---TTT-NTTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
Reference ( family-6138 ) : TCACCGACTCCCAGTC-GAGACTGAAAGATG-GTGTGGCACT-CCAAAACATGAAAGAA-TTTGCCATA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATTG-T--CTTGGTGAATGCCA---TTT-NTTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AAAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
gi|1 : -TTAGCCATA-T---TTGTAACACGAATCAATATAATT------ATATC-TTG----------GAAGGCCA---GTT--TTTGAAGAATGGCGGAAAAACCTATCTGTTGTAGA-AAGA-TATTGTTATTGAAACCAAAC-----GTTT-AACAAATTTTCCCGAA-TATT-TCAACTGCCTG-AATC-CAATGCAAC-----TAT-AAAT-TGTTGATAGTTTTATATCTTAAA-------T-ACATGACCAAGTCTG-TCCTT-CCATA-ATTTC-ATTTTCAG--TCATC-TAAAA---TTCCTTTCGCTTTTTC-ACGTGTACCTTGTA
gi|10 : ATTTT-CTGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TGTCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATGTGACCATGTCTG-TCC-T-CCTTG-A-TTC-A-TCTCAG--TCATC-TGAAA---TTATTCT-GCTTTTTC-ACGTGTACCTTGTATctattgtttcatttcctgtatatagaacctcatgtacattaaatggtgtctgagagaaataaactgacagaacttgaaag
gi|11 : TTATTGTCAACGG-CTG-ACTTACAAT-TACT-----TGTCAAAT-TGT--GT-GTTTTATATCT-AAA-------T-ATATGACCAAGTTCT-TCC-T-CCTTG-A-TTCGA-TCTCAG--TCA--------------------CTTTTTC-ACGTGTACCTTGTATattgtttcaacttgtatatattaaatatagaacctcatgtaccataaagtagtgtgagagaaataaactgaacttgaa
gi|12 : -TCC-C-CCATA-A-TTC-A-TCTCAG--TCATC-GCAAG---TTACTCT-G-CTTTTC-ACATGTACCTTGTATattgtttcaatttgtatatattgggtatatagaacctcgtgttactattaaaagtgtgtgagagaaataaactgaacagattcttaaaat
gi|13 : GATG-GTGTGGCTCT-C---------AAA-----TTGCTATA-TATCT-GTAAGACGATTAAG-ATAGCTG-ATTAATATCATTA-TATCTT--TGAATGCCAGGGTTT-TTTTTAAGAATGGCGGAAAAA-ATGTTTG-TGT--A-AAAA-TATTGTTAT--AAattatttcaatttatatatattgtacataaattctcatgtaccatcaagtggtcagaaagaaataaactgaacttgaacta
gi|14 : C-GAGATTGGAAGATG-ATGTGGTACT-CCAAAACATGAGAGAA-TCTGCCATA-TC--T-GTAAAACGAAACAA-AT
gi|14 : ---T-GCAAACCGAATCAA-ATAGCTG-ATGGATATCATcactatcgcctgtttatgcaaaccgaatcaaatagctgatggatatcat
gi|15 : cgagattggaagatgatgtggtactccaaaacatgagagaatctgccatatctgtaaaacgaaacaaatcactatcgcctgtttaGAATCATTATCAACTG-CTA-AGTG-CAATGTACT-----TCGCGAAA-TGT--GTAG--TTATATCTAAAATACAATGT-ATACGATCAGGTCTG-TCC-T-CAATA-A-TTC-A-TTTCAA--TC
gi|17 : tTG-ATTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAATG-------T-ATAT
gi|2 : TTGCCATA-T---TTGTGACACGAATCAATATAATT------ATATC-TT----------TGAAGGCCA---GTT-TTTTGAAGAATGGCGGAAAAA-CTATCTG-TGT--A-AAAA-TATTGTTAT--AAACCAAAC-----GT-T-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-AATC-CAATGCACC-----TATAAAAT-TGT--GTAGTTTTATATCTTAAA-------T-ATATGACCAAGTCTG-TCC-T-CCATATA-TTC-A-TTTCAGAATCATC-TAAAATTTCCATTTC-GCTTTTTC-AGATGTACCTctatatgaatctattatatctata
gi|20 : TCACCGACTCCCAGTC-GAGACTGAAAGATG-GTGTGACACT-CCAAAACattggtaaattgggtattcatatttgctatatagaacctcatgtatcattaaatggtgtgagagaaataaactgaacatgaacttgaa
gi|3 : aTCACCGACTCC-AGTCCAAGACTGAGAGATGTGTGTG-CACTTCCAAAACATGAGAGAAATTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATGT-T--CTTGGTGAATGCCA---TTT-ATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTA-TGCCAA-TG-CTGAACTC-CAATGTACT-----TAT-AAAT-TGT--GTATTTTTATATCT---A-------T-ATATG-TCAAGTCTGTTCC-TGCCTTA-A-TTC-A-TCTTAG--TCATCTTTAAA---CTACTC--GCCTTTTCAACGTGTACCTTGTGT
gi|4 : TCACCGACTCCCAGTC-AAGACTGGAAGATG-GTGTGGCACT-CCAAAACA------AA-TTTGCCACA-T---T-GTAAAACGAATCAA--TAGGTGGATGAATATCATT--T--CTT--TGAATGCCA---TTT-ATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTATTTTTATATCTAAAA-------T-ATATGTCCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTGTa
gi|5 : GTGGCACT-C-AAAACAT-AGAGAA-TTTGCCACAGT---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCACTGAT--CTTGGTGAATGCCA---TTTAATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAA-TG-CTGAACTC-CAATGTACT-----TATCAAATGTGT--GTATTTTTATATCTAAAA-------TCATATTGTCAAGT-TGTTCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTACTC--GCCTTTTC-ACGTGTACCTTGT
gi|6 : GTGGCACT-C-AAAACAT-AGAGAA-TTTGCCACAGT---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCACTGAT--CTTGGTGAATGCCAT--TTT-ATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAAATG-CTG-ACTC-CAATGTACT-----TAATAAAT-TGT--GTATTTTTATATCTAAAA-------T-ATATG-TCAAGT-TG-TCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTA--CT-GCCTTTTC-ACGTGTACCTTGTg
gi|7 : ---TTT-TTTTTAAGAATGGCGAAAAAA--TATCCG-TGT--A-AAAAATATTGTTAC--AAACCAAA------GTAT-TACAAATTTT-CTGAATTATTGTCAACGG-CTG-ACTC-CAATGTACT-----TGTCAGAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-----T-CCTTG-A-TTC-A-TCTCAG--TCATC-TGA------T-TTCT-G-CTTTTC-ATGTGTACCTCGTATg
gi|8 : TACATGTATCTA----TTAT----AATAACTGTCAACTG-CGG-ACTC-CAACGTACTGCACTTATCAAAT-GTT--GTAGTTTTATATCTAAAA-------T-ACATGACCAAGTCTG-TCC-T-CCTTG-A-TTC-A-TCTCAG--TCATC-TAAAG---TTACTCT-GCGTTTTC-ACGTGTATCTTGTATattgtttcaatttgtatatattgtataagtggtgtgagagaaataaactgaactggactgaactatga
gi|9 : GGCACT-CCAAAACATGAAAGAA-TTTACCATC-TC--T-GTAAAACGAATCAA-ATAGCTT-ATGAATATCATTA-TATCTT--TGAATGCCA---GTT-TTTTGAAGAATGGCGAAAAAA-ATATTTG-TGT--ACAAAA-TATTGTTAT--AAACCAAACTA------T-TACAAATTTT-CTGAATTATTGTCAACGG-CTG-ACTC-CAATGTACT-----TGTCAAGT-TGT--GTAGTTTTATATCCAAAA-------T-ATATGACCAAattgttccaatttgcatatattgtatatagaacctcatgcactattaagcggtgtgggagaaataatctgaacttgaactta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTATATTGTTTAAATTTGTGTATATTGTATAGAGAACCTCATGTACAATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACCACCTG
Unaligned ( gi|18 ): TTTCAATCAGTATATTTTTTATACATGGTTTGAGTGTAATAAACTGAGCTGAACTGAAC
Unaligned ( gi|19 ): AAATAAAATAGTTATGACAAAAGTCTACGTATTTTTTGAACGGCCCTCG
Alignments
lowQualScore : 1 11 111 4444444444 111 22222 11111 1111111
lowQualScore : 6 0 8 5 8 22 5 8 555 8 8 88 1 4444444444 222 99 2 1 99 4 55555 4 1 66 00000 2 4 4 0 3 6 3 77777 0 3 44 2 0000000 3 2 0 6 3 3 3 3 3 3 44 3 2 6666 1 77 3
lowQualScore : . . . . . .. . . ... . . .. . .......... ... .. . . .. . ..... . . .. ..... . . . . . . . ..... . . .. . ....... . . . . . . . . . . .. . . .... . .. .
lowQualScore : 7 0 0 0 8 99 0 9 000 0 0 33 9 4444444444 222 88 7 7 11 4 00000 4 1 11 88888 0 4 0 4 3 2 1 77777 8 1 22 5 0000000 1 6 5 7 3 3 3 3 3 3 66 6 3 7777 2 11 6
consensus : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATTG-T--CTTGGTGAATGCCA---TTT-NTTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
Reference ( family-6138 ) : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATTG-T--CTTGGTGAATGCCA---TTT-NTTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
gi|1 : -TTAGCCATA-T---TTGTAACACGAATCAATATAATT------ATATC-TTG----------GAAGGCCA---GTT--TTTGAAGAATGGCGGAAAAACCTATCTGTTGTAGA-AAGA-TATTGTTATTGAAACCAAAC-----GTTT-AACAAATTTTCCCGAA-TATT-TCAACTGCCTG-AATC-CAATGCAAC-----TAT-AAAT-TGTTGATAGTTTTATATCTTAAA-------T-ACATGACCAAGTCTG-TCCTT-CCATA-ATTTC-ATTTTCAG--TCATC-TAAAA---TTCCTTTCGCTTTTTC-ACGTGTACCTTGTA
gi|10 : ATTTT-CTGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TGTCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATGTGACCATGTCTG-TCC-T-CCTTG-A-TTC-A-TCTCAG--TCATC-TGAAA---TTATTCT-GCTTTTTC-ACGTGTACCTTGTATctattgtttcatttcctgtatatagaacctcatgtacattaaatggtgtctgagagaaataaactgacagaacttgaaag
gi|11 : TTATTGTCAACGG-CTG-ACTTACAAT-TACT-----TGTCAAAT-TGT--GT-GTTTTATATCT-AAA-------T-ATATGACCAAGTTCT-TCC-T-CCTTG-A-TTCGA-TCTCAG--TCA--------------------CTTTTTC-ACGTGTACCTTGTATattgtttcaacttgtatatattaaatatagaacctcatgtaccataaagtagtgtgagagaaataaactgaacttgaa
gi|12 : -TCC-C-CCATA-A-TTC-A-TCTCAG--TCATC-GCAAG---TTACTCT-G-CTTTTC-ACATGTACCTTGTATattgtttcaatttgtatatattgggtatatagaacctcgtgttactattaaaagtgtgtgagagaaataaactgaacagattcttaaaat
gi|13 : GATG-GTGTGGCTCT-C--AAA------------TTGCTATA-TATCT-GTAAGACGATTAAG-ATAGCTG-ATTAATATCATTA-TATCTT--TGAATGCCAGGGTTT-TTTTTAAGAATGGCGGAAAAA-ATGTTTG-TGT--A-AAAA-TATTGTTAT--AAattatttcaatttatatatattgtacataaattctcatgtaccatcaagtggtcagaaagaaataaactgaacttgaacta
gi|14 : C-GAGATTGGAAGATG-ATGTGGTACT-CCAAAACATGAGAGAA-TCTGCCATA-TC--T-GTAAAACGAAACAA-AT
gi|14 : ---T-GCAAACCGAATCAA-ATAGCTG-ATGGATATCATcactatcgcctgtttatgcaaaccgaatcaaatagctgatggatatcat
gi|15 : cgagattggaagatgatgtggtactccaaaacatgagagaatctgccatatctgtaaaacgaaacaaatcactatcgcctgtttaGAATCATTATCAACTG-CTA-AGTG-CAATGTACT-----TCGCGAAA-TGT--GTAG--TTATATCTAAAATACAATGT-ATACGATCAGGTCTG-TCC-T-CAATA-A-TTC-A-TTTCAA--TC
gi|17 : tTG-ATTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAATG-------T-ATAT
gi|2 : TTGCCATA-T---TTGTGACACGAATCAATATAATT------ATATC-TT----------TGAAGGCCA---GTT-TTTTGAAGAATGGCGGAAAAA-CTATCTG-TGT--A-AAAA-TATTGTTAT--AAACCAAAC-----GT-T-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-AATC-CAATGCACC-----TATAAAAT-TGT--GTAGTTTTATATCTTAAA-------T-ATATGACCAAGTCTG-TCC-T-CCATATA-TTC-A-TTTCAGAATCATC-TAAAATTTCCATTTC-GCTTTTTC-AGATGTACCTctatatgaatctattatatctata
gi|20 : TCACCGACTCCCAGTC-GAGACTGAAAGATG-GTGTGACACT-CCAAAACattggtaaattgggtattcatatttgctatatagaacctcatgtatcattaaatggtgtgagagaaataaactgaacatgaacttgaa
gi|3 : aTCACCGACTCC-AGTCCAAGACTGAGAGATGTGTGTG-CACTTCCAAAACATGAGAGAAATTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATGT-T--CTTGGTGAATGCCA---TTT-ATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTA-TGCCAA-TG-CTGAACTC-CAATGTACT-----TAT-AAAT-TGT--GTATTTTTATATCT---A-------T-ATATG-TCAAGTCTGTTCC-TGCCTTA-A-TTC-A-TCTTAG--TCATCTTTAAA---CTACTC--GCCTTTTCAACGTGTACCTTGTGT
gi|4 : TCACCGACTCCCAGTC-AAGACTGGAAGATG-GTGTGGCACT-CCAAAACA------AA-TTTGCCACA-T---T-GTAAAACGAATCAA--TAGGTGGATGAATATCATT--T--CTT--TGAATGCCA---TTT-ATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTATTTTTATATCTAAAA-------T-ATATGTCCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTGTa
gi|5 : GTGGCACT-C-AAAACAT-AGAGAA-TTTGCCACAGT---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCACTGAT--CTTGGTGAATGCCA---TTTAATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAA-TG-CTGAACTC-CAATGTACT-----TATCAAATGTGT--GTATTTTTATATCTAAAA-------TCATATTGTCAAGT-TGTTCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTACTC--GCCTTTTC-ACGTGTACCTTGT
gi|6 : GTGGCACT-C-AAAACAT-AGAGAA-TTTGCCACAGT---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCACTGAT--CTTGGTGAATGCCAT--TTT-ATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAAATG-CTG-ACTC-CAATGTACT-----TAATAAAT-TGT--GTATTTTTATATCTAAAA-------T-ATATG-TCAAGT-TG-TCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTA--CT-GCCTTTTC-ACGTGTACCTTGTg
gi|7 : ---TTT-TTTTTAAGAATGGCGAAAAAA--TATCCG-TGT--A-AAAAATATTGTTAC--AAACCAAA------GTAT-TACAAATTTT-CTGAATTATTGTCAACGG-CTG-ACTC-CAATGTACT-----TGTCAGAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-----T-CCTTG-A-TTC-A-TCTCAG--TCATC-TGA------T-TTCT-G-CTTTTC-ATGTGTACCTCGTATg
gi|8 : TACATGTATCTA----TTAT----AATAACTGTCAACTG-CGG-ACTC-CAACGTACTGCACTTATCAAAT-GTT--GTAGTTTTATATCTAAAA-------T-ACATGACCAAGTCTG-TCC-T-CCTTG-A-TTC-A-TCTCAG--TCATC-TAAAG---TTACTCT-GCGTTTTC-ACGTGTATCTTGTATattgtttcaatttgtatatattgtataagtggtgtgagagaaataaactgaactggactgaactatga
gi|9 : GGCACT-CCAAAACATGAAAGAA-TTTACCATC-TC--T-GTAAAACGAATCAA-ATAGCTT-ATGAATATCATTA-TATCTT--TGAATGCCA---GTT-TTTTGAAGAATGGCGAAAAAA-ATATTTG-TGT--ACAAAA-TATTGTTAT--AAACCAAACTA------T-TACAAATTTT-CTGAATTATTGTCAACGG-CTG-ACTC-CAATGTACT-----TGTCAAGT-TGT--GTAGTTTTATATCCAAAA-------T-ATATGACCAAattgttccaatttgcatatattgtatatagaacctcatgcactattaagcggtgtgggagaaataatctgaacttgaactta
blockSeqs : C C T T C TG A G ATC T T GG A GATCTTGG GGG AA T A A . TAC A G . TACAT A C . . A A GCACT G . A TACAATG C A T . G T . G . AA T G TTTC T T A
blockSeqs : . . . . C TG . G C . . G A GATCTTGG T T G A C . TA . G . TACAT A . . . A . . . . A . . A T . . . . . . . . C T C T .
blockSeqs : . . . C TG . . C . . G A ATATCTT . T A C G . TA . T . TACAT A . . . . . . . . A . . A . . . . . . . . . A T T C .
blockSeqs : . . C T . . . . . G A TTCTTGG . A A C G . TA . T . TACAT A . . . . . . . . T . . A . . . . . . . . . T C C T .
blockSeqs : . C T . . . . . G A ATATCTT . A A C G . . . T . TACAT A . . . . . . . . A . . T . . . . . . . . . T C C T .
blockSeqs : . . . . . . . . G A TCTT . A A C G . . . T . TA A . . . . . . . . A . . G . . . . . . . . . T C C T .
blockSeqs : . . . . . . . T A . . T T A A . . . G . . . . . . . . . . . A . . A . . . . . . . . . T C T T .
blockSeqs : . . . . . . . T G A . . . . G . . . . . . . . . . . A . . A . . . . . . . . . G T C . .
blockSeqs : . . . . . . . . . . A . . A . . . . . . . . . A . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : TG G* ATCTT***** N* G* TA*** ** TACAT ** T*
originalCons : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATTG-T--CTTGGTGAATGCCA---TTT-NTTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
finalCons : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATTATCTT-----TGAATGCCA---TTTN-TTTGAAGAATGGCGAAAAAAG-TATCTG-TGTA---AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTATATTGTTTAAATTTGTGTATATTGTATAGAGAACCTCATGTACAATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACCACCTG
Unaligned ( gi|18 ): TTTCAATCAGTATATTTTTTATACATGGTTTGAGTGTAATAAACTGAGCTGAACTGAAC
Unaligned ( gi|19 ): AAATAAAATAGTTATGACAAAAGTCTACGTATTTTTTGAACGGCCCTCG
Alignments
lowQualScore : 1 11 111 11111 22 11 22222 11111 1111111
lowQualScore : 6 0 8 5 8 22 5 8 555 8 8 1 4 5 55555 00 777 44 2 1 99 4 55555 4 1 66 00000 2 4 4 0 3 6 3 77777 0 3 44 2 0000000 3 2 0 6 3 3 3 3 3 3 44 3 2 6666 1 77 3
lowQualScore : . . . . . .. . . ... . . . . . ..... .. ... .. . . .. . ..... . . .. ..... . . . . . . . ..... . . .. . ....... . . . . . . . . . . .. . . .... . .. .
lowQualScore : 7 0 0 0 8 99 0 9 000 0 0 1 4 2 11111 66 888 22 7 7 11 4 00000 4 1 11 88888 0 4 0 4 3 2 1 77777 8 1 22 5 0000000 1 6 5 7 3 3 3 3 3 3 66 6 3 7777 2 11 6
consensus : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATT-AT--CTTGGTGAATGCCA---TTTT-TTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
Reference ( family-6138 ) : TCACCGACTCCCAGTC-GAGACTGGAAGATG-GTGTGGCACT-CCAAAACATGAGAGAA-TTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATT-AT--CTT--TGAATGCCA---TTTN-TTTGAAGAATGGCGAAAAAA-GTATCTG-TGT--A-AGAA-TATTGTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTCAG--TCATC-TNAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTAT
gi|1 : -TTAGCCATA-T---TTGTAACACGAATCAATATA-----------ATTA-T-AT--CTT--GGAAGGCCA---GTT--TTTGAAGAATGGCGGAAAAACCTATCTGTTGTAGA-AAGA-TATTGTTATTGAAACCAAAC-----GTTT-AACAAATTTTCCCGAA-TATT-TCAACTGCCTG-AATC-CAATGCAAC-----TAT-AAAT-TGTTGATAGTTTTATATCTTAAA-------T-ACATGACCAAGTCTG-TCCTT-CCATA-ATTTC-ATTTTCAG--TCATC-TAAAA---TTCCTTTCGCTTTTTC-ACGTGTACCTTGTA
gi|10 : ATTTT-CTGAATTATTGTCAACTG-CTG-ACTC-CAATGTACT-----TGTCAAAT-TGT--GTAGTTTTATATCTAAAA-------T-ATGTGACCATGTCTG-TCC-T-CCTTG-A-TTC-A-TCTCAG--TCATC-TGAAA---TTATTCT-GCTTTTTC-ACGTGTACCTTGTATctattgtttcatttcctgtatatagaacctcatgtacattaaatggtgtctgagagaaataaactgacagaacttgaaag
gi|11 : TTATTGTCAACGG-CTG-ACTTACAAT-TACT-----TGTCAAAT-TGT--GT-GTTTTATATCT-AAA-------T-ATATGACCAAGTTCT-TCC-T-CCTTG-A-TTCGA-TCTCAG--TCA--------------------CTTTTTC-ACGTGTACCTTGTATattgtttcaacttgtatatattaaatatagaacctcatgtaccataaagtagtgtgagagaaataaactgaacttgaa
gi|12 : -TCC-C-CCATA-A-TTC-A-TCTCAG--TCATC-GCAAG---TTACTCT-G-CTTTTC-ACATGTACCTTGTATattgtttcaatttgtatatattgggtatatagaacctcgtgttactattaaaagtgtgtgagagaaataaactgaacagattcttaaaat
gi|13 : GATG-GTGTGGCTCT-C--AAA------------TTGCTATA-TATCT-GTAAGACGATTAAG-ATAGCTG-ATTAATATCATT-ATATCTT--TGAATGCCAGGGTTTT-TTTTAAGAATGGCGGAAAAA-ATGTTTG-TGT--A-AAAA-TATTGTTAT--AAattatttcaatttatatatattgtacataaattctcatgtaccatcaagtggtcagaaagaaataaactgaacttgaacta
gi|14 : C-GAGATTGGAAGATG-ATGTGGTACT-CCAAAACATGAGAGAA-TCTGCCATA-TC--T-GTAAAACGAAACAA-AT
gi|14 : ---T-GCAAACCGAATCAA-ATAGCTG-ATGGATATCATcactatcgcctgtttatgcaaaccgaatcaaatagctgatggatatcat
gi|15 : cgagattggaagatgatgtggtactccaaaacatgagagaatctgccatatctgtaaaacgaaacaaatcactatcgcctgtttaGAATCATTATCAACTG-CTA-AGTG-CAATGTACT-----TCGCGAAA-TGT--GTAG--TTATATCTAAAATACAATGT-ATACGATCAGGTCTG-TCC-T-CAATA-A-TTC-A-TTTCAA--TC
gi|17 : tTG-ATTC-CAATGTACT-----TATCAAAT-TGT--GTAGTTTTATATCTAATG-------T-ATAT
gi|2 : TTGCCATA-T---TTGTGACACGAATCAATATA-----------ATTA-T-AT--CTT--TGAAGGCCA---GTTT-TTTGAAGAATGGCGGAAAAA-CTATCTG-TGT--A-AAAA-TATTGTTAT--AAACCAAAC-----GT-T-TACAAATTTT-CCGAATTATTGTCAACTG-CTG-AATC-CAATGCACC-----TATAAAAT-TGT--GTAGTTTTATATCTTAAA-------T-ATATGACCAAGTCTG-TCC-T-CCATATA-TTC-A-TTTCAGAATCATC-TAAAATTTCCATTTC-GCTTTTTC-AGATGTACCTctatatgaatctattatatctata
gi|20 : TCACCGACTCCCAGTC-GAGACTGAAAGATG-GTGTGACACT-CCAAAACattggtaaattgggtattcatatttgctatatagaacctcatgtatcattaaatggtgtgagagaaataaactgaacatgaacttgaa
gi|3 : aTCACCGACTCC-AGTCCAAGACTGAGAGATGTGTGTG-CACTTCCAAAACATGAGAGAAATTTGCCACA-T---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCATG-TT--CTTGGTGAATGCCA---TTTA-TTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTA-TGCCAA-TG-CTGAACTC-CAATGTACT-----TAT-AAAT-TGT--GTATTTTTATATCT---A-------T-ATATG-TCAAGTCTGTTCC-TGCCTTA-A-TTC-A-TCTTAG--TCATCTTTAAA---CTACTC--GCCTTTTCAACGTGTACCTTGTGT
gi|4 : TCACCGACTCCCAGTC-AAGACTGGAAGATG-GTGTGGCACT-CCAAAACA------AA-TTTGCCACA-T---T-GTAAAACGAATCAA--TAGGTGGATGAATATCATT--T--CTT--TGAATGCCA---TTTA-TTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAACTG-CTG-ACTC-CAATGTACT-----TATCAAAT-TGT--GTATTTTTATATCTAAAA-------T-ATATGTCCAAGTCTG-TCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTACTCT-GCCTTTTC-ACGTGTACCTTGTGTa
gi|5 : GTGGCACT-C-AAAACAT-AGAGAA-TTTGCCACAGT---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCACTGAT--CTTGGTGAATGCCA---TTTAATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAA-TG-CTGAACTC-CAATGTACT-----TATCAAATGTGT--GTATTTTTATATCTAAAA-------TCATATTGTCAAGT-TGTTCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTACTC--GCCTTTTC-ACGTGTACCTTGT
gi|6 : GTGGCACT-C-AAAACAT-AGAGAA-TTTGCCACAGT---T-GTAAAACGAATCAA-ATAGCTG-ATGAATATCACTGAT--CTTGGTGAATGCCA---TTTTATTTAAAGACTGGCGAAAAAA-GTATCTG-TG-----AGAA-TATTTTTAT--AAACCAAACTACATGTAT-TACAAATTTT-CCGAATTATTGCCAAATG-CTG-ACTC-CAATGTACT-----TAATAAAT-TGT--GTATTTTTATATCTAAAA-------T-ATATG-TCAAGT-TG-TCC-T-CCTTA-A-TTC-A-TCTTAG--TCATC-TTAAA---CTA--CT-GCCTTTTC-ACGTGTACCTTGTg
gi|7 : ---TTTT-TTTTAAGAATGGCGAAAAAA--TATCCG-TGT--A-AAAAATATTGTTAC--AAACCAAA------GTAT-TACAAATTTT-CTGAATTATTGTCAACGG-CTG-ACTC-CAATGTACT-----TGTCAGAT-TGT--GTAGTTTTATATCTAAAA-------T-ATATGACCAAGTCTG-----T-CCTTG-A-TTC-A-TCTCAG--TCATC-TGA------T-TTCT-G-CTTTTC-ATGTGTACCTCGTATg
gi|8 : TACATGTATCTA----TTAT----AATAACTGTCAACTG-CGG-ACTC-CAACGTACTGCACTTATCAAAT-GTT--GTAGTTTTATATCTAAAA-------T-ACATGACCAAGTCTG-TCC-T-CCTTG-A-TTC-A-TCTCAG--TCATC-TAAAG---TTACTCT-GCGTTTTC-ACGTGTATCTTGTATattgtttcaatttgtatatattgtataagtggtgtgagagaaataaactgaactggactgaactatga
gi|9 : GGCACT-CCAAAACATGAAAGAA-TTTACCATC-TC--T-GTAAAACGAATCAA-ATAGCTT-ATGAATATCATT-ATATCTT--TGAATGCCA---GTTT-TTTGAAGAATGGCGAAAAAA-ATATTTG-TGT--ACAAAA-TATTGTTAT--AAACCAAACTA------T-TACAAATTTT-CTGAATTATTGTCAACGG-CTG-ACTC-CAATGTACT-----TGTCAAGT-TGT--GTAGTTTTATATCCAAAA-------T-ATATGACCAAattgttccaatttgcatatattgtatatagaacctcatgcactattaagcggtgtgggagaaataatctgaacttgaactta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGTATATTGTTTAAATTTGTGTATATTGTATAGAGAACCTCATGTACAATTAAGTGGTGTGAGAGAAATAAACTGAACTGAACCACCTG
Unaligned ( gi|18 ): TTTCAATCAGTATATTTTTTATACATGGTTTGAGTGTAATAAACTGAGCTGAACTGAAC
Unaligned ( gi|19 ): AAATAAAATAGTTATGACAAAAGTCTACGTATTTTTTGAACGGCCCTCG