lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111111111111111111111111 1111111 11111 11 11111 1 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222222222 111 222222 1111111111 222222222 1 3333 33333333 1111111 22 111 111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 222222 1111 3333333333333333333333333 3333333333333333333333333333333333 11 11111 1111111 444 333333 222222
lowQualScore : 2 2 5555555555555555555555555555555555 2 2 0 2 2 4 55555 2 2 77 2 3333333 3 88888 22222 3 88 3 11 22222 888 0 8 77 5 888 5 6 1 0 444 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 66 22 222222222222222 4 111 4 111111 1111111111 4 66 1 000000000 8888 5 8 5 0 22 0000 5 3 33333333 5 1 5 9999999 5 88 111 8 333 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 7777777 5 6 66 5 5 444444 0000 2 8888888888888888888888888 777 66 9999 8888888888888888888888888888888888 4 4 66 00 4 0 4 11111 0000000 777 3 3 5 66 8 222222 2 33 444 33 77 111111 2 2 6666 33 666 2 55 2
lowQualScore : . . .................................. . . . . . . ..... . . .. . ....... . ..... ..... . .. . .. ..... ... . . .. . ... . . . . ... . .................................................................................................................................................................................................................................................................................................................................................... .. .. ............... . ... . ...... .......... . .. . ......... .... . . . . .. .... . . ........ . . . ....... . .. ... . ... ........................................................................................................................... . ....... . . .. . . ...... .... . ......................... ... .. .... .................................. . . .. .. . . . ..... ....... ... . . . .. . ...... . .. ... .. .. ...... . . .... .. ... . .. .
lowQualScore : 5 2 8888888888888888888888888888888888 0 0 7 0 2 4 99999 4 4 55 7 2222222 3 33333 22222 6 66 6 99 22222 888 4 4 44 7 000 7 4 0 8 000 8 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 33 333333333333333 4 222 4 888888 4444444444 4 11 4 000000000 3333 7 3 7 1 11 7777 7 0 66666666 7 3 7 1111111 7 88 777 0 000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 1111111 0 5 99 0 0 111111 6666 2 6666666666666666666666666 888 11 4444 8888888888888888888888888888888888 4 4 11 66 4 1 4 11111 9999999 888 6 3 3 99 0 999999 7 77 777 77 77 777777 2 2 0000 22 555 4 99 5
consensus : CTACTAAA-CAG-AGT----------A-----------C----------GTTAGA-GT-ACTTT-AGAG-T-ACG-----CTG-G-AAN-AA-TAA--C-CAT-A-----ATT---CTAAG-T--AAT-GCAACAG--ATTATTTT---TATT---TATATGCTTAAANAAA-CA-TTAT-TATAAAATAATTT---TGCAATAG--GCCT-A-TTGTCTCG-TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------ACCA--T-AA--AA-----C-GGC-ATCCC---------------GAT----T-----AT---TA---TTA------TTTG-------------------G-TG-AGAATTT---AG-CA-------TACT-ACA--CA--G--AA----T-----CAT-------CATTC-GGG-GTT-GTCGG----------------N-A----AA-ACT--------TCAAA-A------------T----TC-------------AT--TGCAGT----TAGT-TA-ACTAG-C--TTAA-AA-----NAC-----T-CCGTA-AA--ATTGCT---------TAAGT-T--T-GTT-TTCCAGCTTTGTTCA-C--GCT-TTGACGAAT--AA----T-GTTCTT-CAATAA----AAG-TAAAT--AAT---AT-GG-TTATAA-ATGCATNA-GTAAA-TTG---ATTTCGAGTTTC-TACAG-ACC--TGNTANTACG-CTT--TTATT-TTTATGC--TAAAT-TATA--TG----AAT-AT-TTGATTCGGGGTCAAG--CA-CGCG-TAA-C-CGTAG-CTAGAAG--CA-A-TAA--ATTAGA----AATAATTCCCC---T-AAA-AT-----ACT-AGAA---AACA--AACAA----AAT-A-TA-TT-C--TAA-----TATAN--ATTTA--A-TA-GG--TTAAACT--A-CAGT-ACGATCA-TTCATT---AAC-AGC---AGTTAAA-TGG-CA-TTA--AAAT-ATG--ATTTATT-TTTC--CAG---CGT--A-CTCTAAAGT---CTCTAACG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( gi|5 ) : CTACTAAA-CAG-AGT----------A-----------C----------GTTAGA-GT-ACTTT-AGAG-T-ACA-----CTG-G-AAT-AA-TAA--C-CAT-A-----ATT---CTAAG-T--AAT-GCAACAG--ATTATTTT---TATT---TATATGCTTAAAAAAA-CA-TCAT-TATGAAATAATTT---TGCAATAG--GCCT-AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------ACCA--T-AA--AA-----C-GGC-ATCCC---------------GAT----T-----AT---TA---TTA------TTTG-------------------G-TG-AGAATTT---AG-CA-------TACT-AC---CA--G--AA----------CAT-------CATTC-GCG-GTT-GTCGG----------------C-A----AA-ACT--------TCAAA-A------------T----T--------------AT--TGCAGT----TAGT-TA-ACTAG-C--TTAA-AA-----GAC-----T-CCGTA-AA--ATTGCT---------TAAGT-T--T-GCT-TTCCAGCTTTGTTCA-C-CGCT-TTGACGAATG-AA----T-GTTCTT-CAATAA----AAG-TAAATTCAAT---AT-GG-TTATAA-A--CATCA-GTAA--TTG---ATTTCGAGTCTC-TACAA-ACC--TGTTACTACG-CTT--TTATTGTTTATGT--TAAATGTAT---TG----AATGAT-TTGATTCGACGTCAAA-GCA-CGCG-TAA-C-CGTAG-CTAGAAG--CA-A-TAA--CTTAGA----AATAATTTCCC---T-AAA-AT-----ACTCAGAA---AACA--AACAA----AATCA-TA-TT-C--TAA-----TATAA--ATT----A-TA-GG--TTAAACT--A-CAGT-ACGACCA-TTCATT---AAC-AGCT-GAGTTAAA-TGG-CA-TTA--AAAT-ATG--ATTTATT-TTTC--CAG---CGT--A-CTCTAAAGT-T-CTCTAACG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCG
gi|2 : CTACTAAA-CAG-AGT----------A-----------C----------TTTAGA-GT-ACGTT-AGAG-T-ACA-----CTG-G-AAT-AA-TAA--C-CAT-A-----ATT---CTAAG-T--AAT-GCAACAG--ATTATTTT----ATT---T-TATGCTTAAATAAA-CA-TTAT-TATAAAATAATTT---TGCAAGAGTTGTCTCAATTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTATTAATT-AA--AGGTTTTC-GCC-ATCCTAATCACG--------GAT----T-----AT---CA---TTA------TTTG-------------------G-TG-AGAATT----AG-CA-------TACT-ACAACCA--GT-GATCATTT----CAT-------CATTCAGGG-GTT-GTCGG----------------G-A----AA-AAT--------TCACA-A------------TCGAAT--------------ATAATGCAGT----TAGT-TA-ACTAG-C--TT-A-AA-----TAC-----T-CCCT--AA--ATTGCT---------TA
gi|2 : tcCTACTAAA-CAG-AGT----------A-----------T----------GTTAGA-GA-ACTTT-AGAG-T-ACG-----CTG-G-AAA-AA-T-A--T-TAT-A-----TTT---------T--AAT-GCCACcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|9 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttagCTACTAAA-CAG-AGT----------A-----------CTTTAGAGTATGTTAGA-GT-ACTTT-AGAG-T-ACA-----CTG-G-AAT-AA-TAA--C-CAT-A-----ATT---CTAAG-T--AAT-GCATCAG--ATTATTTT---TATT---CATATTCTTAAATAAA-CT-TAAT-TATAAAATAATTT---TGCAATAA----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------ACCA--T-AA--AA-------GGC-ATTCT----------------AT----T-----Agacc
gi|8 : tcCTACTAAA-CAG-AGT----------A-----------C----------TTTAGA-GT-ACTTT-AGAG-TAACA-----CTG-G--AT-AA-TAA--C-GAT-G-----ATT---CTAAG-T--AAT-ACAACAG--ATTATCTT---TATT---TATATACTT-AATAAA-CA-TTAT-TGT
gi|13 : gtcCTACTAAA-CAG-AGT----------A-----------C----------TTCAGA-GT-ACTTT-AG-G-T-ACA-----CTGTC-AATAAA-TAA--C-----A-----ATT---T--AG-T--AAT-G-AACAGGAATTATTTT---TTAT---TATATGCT--AAATAA-Cttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|17 : tcCTACTAAA-CAG-AGT----------A-----------C----------GTTA-------------GAG-T-ACG-----CTG-G-AAA-AA-T-A--T-TAT-A-----TTT---C--------AAT-GC
gi|18 : gtacatgcagttaaataCTAC-AAA-CAG-AGTACTTTAGGTAA-----------C----------GTTAGA-G--AATTT-AGA--T-ACG-----CTG-G-AAA-AA-TAgacc
gi|19 : taaaaataaCTACTAA--CAG-AGT----------A-----------C----------TTTAGA-GT-ACGTT-AGAG-T-ACG-----CTG-G-AAA-AA-TAacc
gi|15 : CTACTAAA-CAG-AGT----------A-----------C----------GTTAGA-GT-A-----AG-------------CTG-G-AAA-AA-TA-----TAT-A-----ATT---CAAAG-T--AAT-TTAACTA--ATTATTTA---TATA---TATAg
gi|21 : tcCTACTAAG-CAG-AGT----------A-----------C----------TTTAGA-GT-ACGTT-aa
gi|20 : CTACTAAA-TAG-AGT----------A-----------C----------GTTAGA-GT-ACGCT-GGAgacc
gi|3 : attttTACTAAAACAG-AGT----------A-----------C----------GTTAGA-GT-ACTT--AGAT-T-ACA-----T---G-AAT-AA-TAA--C--AT-A-----ATT---CTAAGCT--AATTGCAA-AGC-ATTATTT-----ATT---TATATGCTTAAAAAAAACAGTCATGTATGAATCAATTTATTCGCAAT-G--GCCT-AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------ACCA--TTAA--AA-----C-G-C-ATCCC---------------GAT----T-----AT---TA---TTA------TT--------------------------GGAATTT---AG----------TACT-AG---CA--G--AA----------ACT-------CATCT-CCGAGTT-GTCGG----------------C-A----AA-CCT--------T-AAA-A------------T----T--------------AT--TGCAGTA---TAGTCTA-ACT-G-C--TTAAGAA-----GAC-----T-CCGTA-AA---TTGCT---------TAAGT-T--T-GGT-T-CCAGCTTTGTTCA-C--GCT-TTGACGAAT--AA----T-GTTCTT-CAATAA----AAGCTAAATTCAAT---AT-GG-TTATAA-A---ATC--GTAA--TGG---ATTTCGA-TCTC--ACAA-ACC--T-TTATTACG-CTT--TTATTATTTATGT--TAAATTGATA--TG----AATGAT-TTGATTCGGCGTCAA---CAGCGCG-TAA-C-CGTAG-CTAGAAG--CA-A-TAA--CTTAGA----A-TAATTCCCT---T-AAACAT-----ACT-AGAA---AACA--AACAA----AAATACTA-TT-TCATAA-----TATAAGTATT----AATA-GG--TTAAACT--A-CAGTTACGACCAGTTCATT---AAC-AGCTAGAGTTAAA-TGG-CAATTA--AAAT-ATGCGATTTATT-TTTC--CAG---CGT--A-CTCTAAAGT-T-CTCGAACG-TACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACCgacc
gi|16 : TACTAAA-CAG-AGT----------A-----------C----------TTTAGA-GT-ACATT-AAAG-T-ACG-----CTG-G-AAcggacctggtaactttt
gi|11 : agcagttaaatggcattaaaatataatatgtACTAAA-CAG-AGT----------AATATTAGAGTTA----------GTTAGAGGT-ACTTT-AGAGAT-ACA-----CTG-GAAAT-AA-T-A--T-CAT-ATTTATATTTAGCTAAA-TACAAT--CAATGT--ATTATTTTATCTATTTTATATATACTT-AAATAA-CA-TTAT-TGTtaggacc
gi|10 : ggtcctaTAAA-CAG-AAT----------A-----------C----------TTTAGA-GT-ACGTT-AGAG-T-ACA-----CTG-G-AAA-AA-T-A--T-TAT-A-----ATT---------T--AAT-GCct
gi|7 : atttctcaaacagaaaaaaaattagcttgggttgctaaagatatatttaataggctaaacttcattaccagtattcattaacagcagttaaatgAAA-CAGTAGT----------A-----------C-----------TTAGA-GTTACTTTTAGAG-TTACA-----CTG-G-AAT-AAATAA--C-GATGA-----ATT---CTAAG-TT-AAT-ACAACAG--AT---------TATC---TAT-TATTTA---------------TAT------ACTT---TA-AATAA--ACAT-A-------------TT-----TG-TTTT-----T-G--CC-A-T----T------C-----------------------------------C-GG--ATCCCC--------------GAT----T-----AT---TA---T-A------TTTG-------------------G-TG-AGAATTT---AG-CA-------TACT-ACAC-CA--G--AAGTGATCATT-CAT-------CATTC-GGG-GTT-GTCGG----------------A-A----AA-ACTTATGCAGTTTAAA-A------------C----TTAAAAACCCGTAAAAT--TGCTGT----GAA---A-AC-AG-C--ACAA-AACAATTGACAATTAT-AAATA-AA--AATATT-----------AGT-T--T-G-T-TTCCAGCTTGTTTCA-A-GGCT-TTGGCAAAT--AA----T-A-TCTT-CAAT-A----AAG-TAAATaaagca
gi|4 : aAG-AGC----------A-----------C----------GTTAGA-GA-ACTTT-AGAG-G-AAACGGCTCTG-G-AAA-AA-Taagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|3 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaG-AGT----------A-----------C----------GTTCGA-GA-ACTTT-AGAG-T-ACG-----CTG-G-AAA-AA-TAAATCGCAT-------ATT---TTAAaaaccgtgctatctgttatttagtcaggagg
gi|21 : tactaaaacagagtacgttagagtacttagattacatgaataataacataattctaagctaattgcaaagcattatttatttatatgcttaaaaaaaacagtcatgtatgaatcaatttattcgcaatggcctagttgctctttttgtttagcgagtttctaaccattaaaacgcatcccgattattattattggaatttagtactagcagaaactcatctccgagttgtcggcaaaccttaaaattattgcagtatagtctaactgcttaagaagactccgtaaattgcttaagtttggttccagctttgttcacgctttgacgaataatgttcttcaataaaagctaaattcaatatggttataaaatcgtaatggatttcgatctcacaaacctttattacgcttttattatttatgttaaattgatatgaatgatttgattcggcgtcaacagcgcgtaaccgtagctagaagcaataacttagaataattcccttaaacatactagaaaacaaacaaaaatactatttcataatataagtattaataggttaaactacagttacgaccagttcattaacagctagagttaaatggcaaAGA-GT-ACTTT-AGAG-T-ACctaaacgtctcgtcttagaggacccggacctggtaactttt
gi|12 : aacA-GT-ACTTT-AGAG-T-ACG-----CGG-G-Agcttagtaggacc
gi|6 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcatgaatgtttgT-TAT-AAATA-TTT---TGCAATAG-----T-A--TGTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------AC----T-AA--AA-----C-A-C-ATTCT---------------TATA---T-----AC---TA---TTAAAGGGTTTTGCCATCACGAATATATATTTG-TA-AGAATTT---AGATA-------TAC--AC---CA--GTGGATCATT-----CAT-------CATCC-GGG-GTT-GTCGG----------------GGA----AA-ACT--------TCAAA-AATTCACAATCGAT----T--------------AT--TGCATT----CAGT-TA-AC-AG-C--T-AA-AA-----TAC-----T-CTGTA-AA--ATTGCT---------
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------ACCA--TTAAGGAA-----CAGGC-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA------TTTG-------------------GGTG-AGAATTT---AG-CA-------T-CT-AC-----------------------AT-------CAT-C-G-G-GTT-GTCGG----------------A-A----AATATC--------TCAAA-A------------T----TCACGATCAA-----AT--T--AATGACGTAGT-TATACTAG-C---TAA-AA-----TAC-----T-CGGTATAA--ATTGAT---------TAAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|1 : caatagtttgtacaattaTTT-----TAG--CG-A-T--GTT------CTAAA------------ACCA--T-AG--AA-----C-GACGGTGTC---------------TATTTTGT-----AT---TAAGGTTA------TTTG-------------------T-TG-tgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|8 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtg-----C-GG--ATCCC---------------GAT----T-----AT---TA---TTA------TTTG-------------------G-TG-AGAATTT---AG-CA-------TACT-ACA--CAGTG--AT----------CATTTCA---CATTC-G-G-GTTAGTCGG----------------A-A----AA-AC----------------------------T----T--------------AT--TGCAGT----TAA--------AA-C--TTAA-AA-----TAC-----TCCCGTA-AA--ATTGCT---------ccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|8 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatc-----C-GG--ATCCC---------------GAT----T-----AT---TA---TTA------TTTG-------------------G-TG-AGAATTT---AG-CA-------TACT-ACA--CA--GTGAT----------CATTTCA---CATTC-G-G-GTTAGTCGGAAAAACTTATTGCAGTT-A----AA-ACT--------TAAAATA------------C----TCCCGTAAA------AT--TGCTGT----GAA---A-AC-AG-C--ACAA-AC-----AAT-----T-----G-AA--ATTAATAAATAAATATGAGT-T--TTGTT-TTCCAGC-TTGTTCA----GGT-TTGGC-AATA-AT----T-ATTCTT-CAA-AT----AAG-TAAAT--AAT---Agtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|14 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatcC-ATCCC---------------G-T----TCCAG-AT---TA---TTA------TTTG-------------------G-TG-AGAATTT---AG-CA-------CAC--GC---CA--C--AAGTGATCATTTCAT-------CATTC-GGG-GCT-GTCGG----------------G-A----AA-ACatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|1 : taaaggtttttgcT----T-----AT---CA---TCAATAG--TTTG-------------------G-TGCAGAATTTTTGAG-CAGTTGAGCTACGGAC---CGT-G--AT----------CATGTTCATCCATTC-GGG-GTT-GTCGGAGAAAATGTC------C-ATAGGAA-GTT--------TCACA-A------------T----TCGAATAG-------AT--TGCA-T----TAGTGTA-ACTAG-CCGTTAA-AAGGT--GAC-----T-CCCTA-AG--AT
gi|4 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttTCGG----------------T-A----TA-AAT--------T---G-A------------T----T--------------AA--TGC-GT----TAAG-TACAC-AGTC--ATAA-AA-----GAA-----T-TGACA-CATTATTGAA---------TAAATATAGT-GTTCTTCCAGCTTT--TCAGC-CGCTGTTGACGA-TA-AC----T-GTTCTTTCATTTA----AAG-TAAAT--AATTTTAT-GGATGATAAGA--TGTTATGTAAA-TTG-----TT--AGTTTA-CACAGCACCGTTGCCACTACGACATAGTTAAT-TTTATGCAGTAAATGTGTATGTGGCAGAAT-ATGTTGAATCGAGG--AGATACA-CCCGGTAAACACGTAGGCTAGAAG--AGGA-TAAAGCTGAGA----AGTAATTCGCCGTGT-GAA-ACTGTGAAATCACAG---TACA--TACAATTTAAATC-----TC-C--TAAACAGGTATAT--ATTGGTAA-TA-GAGATTAGTCTCTATCAGT--TGTCGA-TTAA-----AGC-AGC---AGGTAA--TGG-TA-TTAGAAAAT-TTG--AACAATT-TTTC--CAGAGCCGTTTC-CTCTAAAGT-T-CTCTAACG-TGCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|6 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatacAGT-A--T-GTT-TTCCA-CCTTGTTCA-C--GCT-T-GACGAAT---A----T-GTTCGT-CAATAA----AG---AAAT--AAT---AT-GG-G-ACAA-ATGCAT---GTAAAATTG---GCT---AGTTTCATACA---CC--TGATAATAC-----------------TGC--TA----TAT---TT----A-------TGAT-CGGGATCAAG-----CG-G-TAAAC-CGTAG-CTAGAAGGCCA-A-TAA--ATT-GA----ATTAATTCC-------AAA-AT-----ACT--GAA---AACA--A-CAA----AATTA-TA-TTTC--TAA-----TATTA--TTTG---A-TA-GG--CAATACT--A-CAGT-ACGATCA-TTCATT---AACAAGC---AGTTAGA-TGG-CATTTA--AAAC-Agg
gi|1 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattcacaatcgattattgcattcagttaacagctaaaatactctgtaaaattgctacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatGT-T--T-GGT-TTCCAGCTTTGTTCA-CGCGTT-TTGACGAACGTAAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGTAGAG---AT-GG-Tga
gi|2 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattT-T--T-G-T-TTCCAGCTT-GTTCA-C--GCT-TTGAATAAT--AA----T-GTTCGT-CAAT-A----AAG-TAA---TAAT---ATGGG-TTATAA-ATGCATGA---AA--TTGGCTATTTCA-----T-TACA----C--TG--AATACG-CTA--TTATT-TTTATGgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-CGCG---G-C-CGTAG-CTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-AT-----ACTAAGAAGGTAACAACAGCGA----AATGA-TT-TT-atcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|7 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttcAA-T-CGTAG-TT-GAAG--CA-A-TAA--ATT-GA----AATAATTTTCC---T-AAA--T-----ACT--GAA---AACA--AACAA----AAT-A-TATTT-C--TAA-----TATAT--ATTTA--A-TGTAG--TTAAACTA-A-CATT-ACG---A-TTCATTTCCAATAAAC---AGTTAAATTGGCCA-TTA--AAAgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaAA-T-CGTAG-CT-GAAG--CA-A-TAA--ATT-GA----AATAATT--CC---T-ATA--T-----ACT--GAA---AACA--AACAA----AAT-A-TA-TTTC--TAA-----TATAT--ATTTA--A-TA-GG--TTAAACT--A-CATT-ACGATCATTTCATT---AA--AGC----GTTAAA--GG-CA-TTA--AAAT-ATcta
gi|12 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaGTAA-CTTGAAA--AG-A-TAA--ATT-TA----AATAATT--CC---T-AAA-AT-----AAT--GAA---AACA--AACAA----AGT-A-TA-TT--------------TCA--ACT----A-TA-GG--TTAAGCT--G-AAGC-Aac
gi|2 : ggaaaaatAG-CTAGAAG--CA-A-TAA--ATT-GA----AATAATT--CC---T-AAA-AT-----ACT--GAA---AACA--AACAA----AAT-A-TA-TTTC--TAA-----TATAT--ATTTA--A-TA-GG--CTAAACT--A-CAGT-ACGATCA-TTCATT---AAC-AGC---AGTTAGG-TGG-CA-TTA--AAAT-ATA--AT--ATT-TTTC--CAG---CGT--A-CTCTAAAGT-T-CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCagcatgaatgtttgtcccgcgtactctaaagtact
gi|10 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaATTTCTC------AA-A---------CAGAA---AAAA--AATTA----GCTTG-GG-TTGC--TAAA----GATAT--ATTTA--A-TA-GG--CTAAACT--T-CATT-ACCAGTA-TTCATT---AAC-AGC---AGTTAAA-TGG-CA-TTA--AATT-ATA--AT--ATT-TTTC--CAG---TGT--A-------------CTCTAACG-TACT-CTAA-A--GTAT--TCTG---T-TTA
gi|11 : A-----TATAA--A------A-TA-GA--T-AAA----A-TAAT-AC----A-TTGATT---G-T-ATTT--AGCTAAA-T----A-T----AAAT-ATG--AT--ATTATTTC--CAG---TGT--ATCTCTAAAGTAC-CTCTAACT-AACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|16 : AGTTAAA-TGG-CA-TTA--AAAT-ATA--AT--ATG-TTTC--CAG---CGT--A-CTTTAA------------TG-TACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCatacttaaataacattattgtct
gi|17 : agcAGTTAAA-TAG-CA-TTG--AAAT-ATA--AT--ATT-TTTC--CAG---CGT--A-CTCT------------AAC---------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|15 : gtacatgcAGTTAAA-TTA-CT-TTG--AATT-ATA-----TATT-TTTC--CAG---CTT--A-------------CTCTAACG---------------TAC--TCTG---T-TTAG--T-AGGA
gi|13 : -CA-TTACTAAAT--TG----TTATT-TATTGACAG---TGT--A-C-CTAAAGT-------------ACT-CTGA-A--GTAC--TCTG---T-TTAG--T-AGGAaattatttatatatataaa
gi|3 : -TTA--GAATTATG----TTATT-ATTC----A---TGT--A-ATCTAA-GT-A-CTCTAACG-TACT-CTaacaggaattattttttattatatgctaaataac
gi|2 : tactaaaac-TTA--GAATTATG--GTT-ATT-ATTC--CAG---TGT--A-CTCTAA------------CG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGAgctaattgcaaagcattatttatttatatgcttaaaaaaaacagtcatgtatgaatcaatttattcgcaatggcctagttgctctttttgtttagcgagtttctaaccattaaaacgcatcccgattattattattggaatttagtactagcagaaactcatctccgagttgtcggcaaaccttaaaattattgcagtatagtctaactgcttaagaagactccgtaaattgcttaagtttggttccagctttgttcacgctttgacgaataatgttcttcaataaaagctaaattcaatatggttataaaatcgtaatggatttcgatctcacaaacctttattacgcttttattatttatgttaaattgatatgaatgatttgattcggcgtcaacagcgcgtaaccgtagctagaagcaataacttagaataattcccttaaacatactagaaaacaaacaaaaatactatttcataatataagtattaataggttaaactacagttacgaccagttcattaacagctagagttaaatggcaattaaaatatgcgatttatttttccagcgtactctaaagttctcgaacgtactcctaaacgtctcgtcttagaggacccggacctggtaactttt
gi|9 : -TTA--GAATTATG--GTT-ATT-ATTC--CAG---TGT--A-CTCTAAAGT-A-CTCTAACA-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGAgtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|18 : TA--AAA--ATA--AT--ATT-TTTC--CAG---CGT--A--TCTAAA-T-T-CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACCgtaatgcatcagattatttttattcatattcttaaataaacttaattataaaataattttgcaataatgtcacaattatttgattttagcgatgttctaggcctaaccataaaaggcattctatta
gi|19 : TATT-TTTC--CAG---CGT--A-------------CTCTAACG-TACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|12 : TGTT-TGTC--CCG---CGT--A-CTCTAAAGT-A-CT
gi|8 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcatgaaGT-TACTCTAAAG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGAC
gi|20 : T-T-TTCCAGCG-TACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACCactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|3 : atTCTAA-G-TACT-CTAA-C--GTAC--TCTGT--T-TTAG--T-
gi|21 : AACG-TACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACCttacatgaataataacataattctaagctaattgcaaagcattatttatttatatgcttaaaaaaaacagtcatgtatgaatcaatttattcgcaatggcctagttgctctttttgtttagcgagtttctaaccattaaaacgcatcccgattattattattggaatttagtactagcagaaactcatctccgagttgtcggcaaaccttaaaattattgcagtatagtctaactgcttaagaagactccgtaaattgcttaagtttggttccagctttgttcacgctttgacgaataatgttcttcaataaaagctaaattcaatatggttataaaatcgtaatggatttcgatctcacaaacctttattacgcttttattatttatgttaaattgatatgaatgatttgattcggcgtcaacagcgcgtaaccgtagctagaagcaataacttagaataattcccttaaacatactagaaaacaaacaaaaatactatttcataatataagtattaataggttaaactacagttacgaccagttcattaacagctagagttaaatggcaattaaaatatgcgatttatttttccagcgtactctaaagttctcgaacgtactcctaaacgtctcgtcttagaggacccggacctggtaactttt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333 111 11 2222222 111 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77777777777777777777777777777777777777777 7777777777777777777777777777777777777777777777777 111111111 111 1111 11 2222 1111 111111111 22222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444444 22 11111 333 1111111 111 1111 11111 11 111 222 3333333333
lowQualScore : 5 5 00000000000 4 4 4 3 66 1 4 000 4 0 5 5 777 0 11 0 66 3 1 3 5555555 4 5 5 111 4 000 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 777 777 2 8888 4 4 777 1 66 66 00000000000000000000000000000000000000000 1 4 4 1 4 2222222222222222222222222222222222222222222222222 66 0 444444444 4 44 000 4 3333 4 4 888 8 1 6 7 55 99 6 99 6 0000 6 3 5 0 2222 0 5 5 666666666 00000 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 5 1111111111111 4 4 66 4 66 22 9999 99999 4 4 333 777 4444444 55 4 111 8 4 4 8 0000 00000 2 4 55 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 777 55 4 0 0000000000 3 3 8888 44 555 3 88 3
lowQualScore : . . ........... . . . . .. . . ... . . . . ... . .. . .. . . . ....... . . . ... . ... . .................................................................................................................................................................... ... ... . .... . . ... . .. .. ......................................... . . . . . ................................................. .. . ......... . .. ... . .... . . ... . . . . .. .. . .. . .... . . . . .... . . . ......... ..... . ................................................................................................................... . . ............. . . .. . .. .. .... ..... . . ... ... ....... .. . ... . . . . .... ..... . . .. . .. . .. . . . .. .... . ... . . . . .. .. ... ... .. . . .......... . . .... .. ... . .. .
lowQualScore : 0 0 66666666666 4 4 4 4 11 0 4 666 4 4 0 0 888 4 99 1 88 0 4 0 3333333 3 7 7 444 9 000 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 000 000 3 5555 0 0 888 1 11 11 99999999999999999999999999999999999999999 9 4 4 0 4 3333333333333333333333333333333333333333333333333 11 1 444444444 4 66 999 4 1111 4 4 888 0 5 7 3 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 0 1111111111111 4 8 11 4 11 77 4444 11111 4 4 222 888 4444444 55 0 000 0 4 4 9 3333 00000 4 0 55 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 55 888 000 55 0 8 0000000000 3 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG--GAATAA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA----CA-TCAT-T-ATAAAATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C-A---GT-----A--A--------TCAT-------CATTC-GGGGTTGTC-GGGAAA-A--------------CTTC-AAAATT----C----------A--------T--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-GTAAA-TTGGTTTC-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTATGC--TAAAT---T-ATATG----AAT-AT-TTGATTCGGGGTC-AAGCG-CGCG-TAAAC-CGTAG-CTAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT---GAA---A-------ACA--AAC-AA---AAT-A-T-A-TT-C--TAA-----TATATAT-T--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GAT--TATTTTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACGCTG--GAANAA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA----CA-TTAT-T-ATAAAATAATTT---TGCAATAG--GCCT--A-TTGTCTC-GTT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C-A---G------A--A--------TCAT-------CATTC-GGGGTTGTC-GGNAAA-A--------------CTTC-AAAATT----C----------A--------T--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-GTAAA-TTGATTTCGAGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTATGC--TAAAT---T-ATATG----AAT-AT-TTGATTCGGGGTC-AAGCA-CGCG-TAA-C-CGTAG-CTAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT-A-GAA---A-------ACA--AAC-AA---AAT-A-T-A-TT-C--TAA-----TATANAT-T--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GAT-TTATTTTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTTGT-TG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTTGG-TGCAGAATTTTTGAGCAGTTGAGCTACGGA--C-C---GT-----G--A--------TCATGTTCATCCATTC-GGGGTTGTC-GGAGAA-AATGTCCATAGGAAGTTTC-ACAATT----CGAATAG----A--------T--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-Gatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattCGGGGAG-AAGTT-C-CG-CGG-C-CGTAG-CTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-ATACTAA-GAAGGTA-------ACAACAGC-GA---AAT-gggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggAA-----GATATAT-T--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AAT---ATTTTTCCAG---TGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAT--TCTG---T-TTAgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaA--GAC-AAT--AAT-G-TTA-TT-T--AAG-----TATATAT-A--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GATATTATTT--CCAG---TGT--ATCTCTAAAG-TACCTCTAACTA-ACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : GTAA-CTTGAAA--AG-ATAAA--TT--TA----AATAATTCC-----T-AAA-ATAAT---GAA---A-------ACA--AAC-AA---AGT-A-T-A-TT-T--CAA-----C----------TA-TA-GG--TTAAGCT-GAAG-CA-
gi|12 : ggaaaaatAGT-ACTTT-AGAGT-ACGCGG--GACAAA-CATTCAT-agcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAA
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--CA--CGCC--A--C-AAGTG------ATCATT------TCAT-------CATTC-GGGGCTGTC-GGGAAA-A--------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----A-------GCTG--GAAAAA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AAT---ATGTTTCCAG---CGT--A-CTTTAA------------TGT-ACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AAT---ATTTTTCCAG---CGT--A-CTCTAA------C---------------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AAT---ATTTTTCCAG---CGT--A--TCTAAAT-T--CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TATTTTTCCAG---CGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG--GAATAA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA----CA-TTAT-T-ATAAAATAATTT---TGCAAGAGTTGTCTCAA-TTATTTT-GTT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTTGG-TG-AGAATT----AGCA--TA--CTAC--AACC-A---GT-----G--A--------TCATTTCAT--CATTCAGGGGTTGTC-GGGAAA-A--------------ATTC-ACAATCGAA-T----------A--------TAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA---TACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA----AA-TTGGCT----ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TTTATG--------------------------------AT-CGGGGTC-AAGC--------------------TAGAAG--CA-ATAAA--TT--GA----AATAATTCC-----T-AAA-ATACT---GAA---A-------ACA--AAC-AA---AAT-A-T-ATTT-C--TAA-----TATATAT-T--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA---TATTTTTCCAG---CGT--A-CTCTAAAGTT--CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-T--TTCCAGCGT-ACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : attAACGT-ACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT----GAATAA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAA---CAGTCATGT-ATGAATCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTA---G--C-A---G------A--AAC------TCAT-------C--TC-CGAGTTGTC-GGCAAA-C--------------CTT--AAAATT---------------A--------T--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA---GACT-CCGTA-AA-TTGCT---TA-AGTTTGGT-T-CCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--GTAA--TGGATTTCGA-TCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATTTATGT--TAAAT---TGATATG----AATGAT-TTGATTCGGCGTC-AA-CAGCGCG-TAA-C-CGTAG-CTAGAAG--CA-ATAAC--TT-AG-----AATAATTCCCT---T-AAACATACT-A-GAA---A-------ACA--AACAAA---AAT-ACT-A-TT-TCATAA-----TATAAGTAT--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGAT-TTATTTTTCCAG---CGT--A-CTCTAAAGTT--CTCGAACGT-ACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CA--TTA---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTAC--A---------------------------TCAT-------C------GGGTTGTC-GGAAAATA--------------TCTC-AAAATT----C----------ACGATCAAAT--T--AATGACGTAGT-TATACTAGC---TAA-AA---TACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATGTAAA-TTG--TT--AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TTTATGCAGTAAATGTGT-ATGTGGCAGAAT-ATGTTGAATCGAGGAG-ATACA-CCCGGTAAACACGTAGGCTAGAAG--AGGATAAAGCTG-AGA----AGTAATTCGCCGTGT-GAA-A--CT-GTGAA---ATCACAGTACA--TAC-AATTTAA--A-T-C-TC-C--TAAACAGGTATATAT-TGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GAA-CAATTTTTCCAGAGCCGTTTC-CTCTAAAG-TT-CTCTAACGT-GCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG--GAATAA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA----CA-TCAT-T-ATGAAATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC-----C-A---G------A--A---------CAT-------CATTC-GCGGTTGTC-GGCAAA-A--------------CTTC-AAAATT---------------A--------T--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---GACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-GT-AA-TTGATTTCGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTTTATGT--TAAATG--T-AT-TG----AATGAT-TTGATTCGACGTCAAAGCA-CGCG-TAA-C-CGTAG-CTAGAAG--CA-ATAAC--TT-AGA----AATAATTTCCC---T-AAA-ATACTCA-GAA---A-------ACA--AAC-AA---AATCA-T-A-TT-C--TAA-----TATAAAT-T----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GAT-TTATTTTTCCAG---CGT--A-CTCTAAAGTT--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-T-ATAAA-TA-TTT---TGCAATAG-----T--A-T-GTCCC-ATTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTTG--TA-AGAATTT---AG-A--TA---TAC--A--CCA---GTGGATCA--T--------TCAT-------CATCC-GGGGTTGTCGGGGAAA-A--------------CTTCAAAAATT----CACAATCGATTA--------T--TGCATT----CAGT-TA-AC-AGC---TAA-AA---TACT-CTGTA-AAATTGCT---g
gi|6 : -AAAATTGCTAC----------A--------T--TGCTGT----CAA---A-AACAGC--ATGA-AA---CAAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---GTAAAATTGGCT---AGTTTCA-TACA---CC--TGATAATAC--------------------------TGC--TATAT---T--TATG----A-----------TCGGGATC-AAGCG----G-TAAAC-CGTAG-CTAGAAGGCCA-ATAAA--TT--GA----ATTAATTCC-------AAA-ATACT---GAA---A-------ACA--A-C-AA---AATTA-T-A-TTTC--TAA-----TAT-TAT-T--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattcacaatcgattattgcattcagttaacagctaaaatactctgtAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG--GAATAAATAACGATGAATTCTAAG-TTAAT-ACAACAG--AT------TATCTAT-TATTTA------------------T-ATA------CTT---TA-AATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--AC-C-A---G------A--AGTGATCATTCAT-------CATTC-GGGGTTGTC-GGAAAA-A--------------CTT--A--------------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-ATA---TTAGTTT---GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TTCA--A--TAAAG---T-AAATA----AGT-AT-C-G---CAGGATC-AAGCG----G-TAAAT-CGTAG-TT-GAAG--CA-ATAAA--TT--GA----AATAATTTTCC---T-AAA--TACT---GAA---A-------ACA--AAC-AA---AAT-A-T-ATTT-C--TAA-----TATATAT-T--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC---------------------TTT-AGAGT-ACTTTA--GAGTAA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGATTATCT-TTAT-TTATA---TACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C-A---GT-----G--A--------TCATTTCA---CATTC-GGGTTAGTC-GGAAAA-A--------------CTT-----------------------A--------T--TGCAGT----TAA--------AAC--TTAA-AA---TACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-GTT---TTGTTTTCCAGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CTT------CAAAT---A-A-GTA----AAT-AA-T--AATCGGA-TC-AAGCG--GTA-AAA-T-CGTAG-CT-GAAG--CA-ATAAA--TT--GA----AATAATTCCTA---T-A----TACT---GAA---A-------ACA--AAC-AA---AAT-A-T-A-TTTC--TAA-----TATATAT-T--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG--GAATAA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA----CT-TAAT-T-ATAAAATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 11 11111 11 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555555555555555555555555555555555555 777777777777777777777777777777777777777 111111111 111 1111 11 2222 1111 111111111 22222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222 111111 22 11111 11 1111111 111 1111 11111 11 111 222 2222222222
lowQualScore : 5 5 77777777777 5 55 7777 0 5 5 5 3 0 5 0 5 5 777 0 11 55 0 0 999 3 66666 1 5 1 00 4 3333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777 777 2 8888 4 4 777 1 66 66 333333333333333333333333333333333333 1 4 4 55 4 777777777777777777777777777777777777777 66 0 444444444 4 44 000 4 3333 4 66 888 8 777 55 99 6 99 6 0000 6 1 5 0 2222 0 5 5 666666666 00000 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 66 5 9999999999999999 4 222222 4 66 4 66 22 9999 99999 4 4 00 4444444 4 222 555 4 4 8 0000 00000 666 666 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 3 3 666 55 3 5555555555 3 3 8888 44 555 3 88 3
lowQualScore : . . ........... . .. .... . . . . . . . . . . ... . .. .. . . ... . ..... . . . .. . .... .................................................................................................................................................................... ... ... . .... . . ... . .. .. .................................... . . . .. . ....................................... .. . ......... . .. ... . .... . .. ... . ... .. .. . .. . .... . . . . .... . . . ......... ..... . .............................................................................................................................. . .. . ................ . ...... . .. . .. .. .... ..... . . .. ....... . ... ... . . . .... ..... ... ... . .. . .. . . . .. .... . ... . . . . .. .. ... . . ... .. . .......... . . .... .. ... . .. .
lowQualScore : 0 0 55555555555 0 11 6666 1 0 0 0 2 8 0 4 0 0 888 4 99 66 4 1 999 0 22222 0 7 7 99 9 6666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 000 3 5555 0 0 888 1 11 11 444444444444444444444444444444444444 9 4 4 33 4 000000000000000000000000000000000000000 11 1 444444444 4 66 999 4 1111 4 33 888 0 333 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 99 0 5555555555555555 4 888888 8 11 4 11 77 4444 11111 4 4 66 4444444 4 222 333 4 4 9 3333 00000 333 444 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 00 666 6 6 444 00 6 2222222222 3 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-----GA-----TCAT-------CATTC-GGGGTTGTC-GG-GAAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TT--TATGN--TAAAT---T-ATATG----AAT-AT-TTGA--TTCGGGGT--C-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-----AA-----TCAT-------CATTC-GGGGTTGTC-GG-GAAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TT--TATGC--TAAAT---T-ATATG----AAT-AT-TTGA--TTCGGGGT--C-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTTGT-TG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTTGG-TGCAGAATTTTTGAGCAGTTGAGCTACGGA--C----CGT-----GA-----TCATGTTCATCCATTC-GGGGTTGTC-GGAGAAA-ATGTCCATAGGAAGTTTC-ACAATT----CGAATAG----AT--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-GGGGACAAG-TTTG-GCT--C-AGTC----------GCC--CGA-AGTACC-C---------------ACC-TTAGTAGGG--GGGAT---CAATACC----GCT-AT-CTGATTTTTAGGATCGC-AAG-GCGGG-GAGAAGTTC-CGCGG-CCGTAGCTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-ATACT--AAGA-------Aatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattAA-----GATA--TATT--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AA-T-A-TT-TTTCCAG---TGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAT--TCTG---T-TTAggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaAGAC-AAT--AA-T-G-TTA-TT-T--AAG-----TATA--TATA--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GA--TA-TTATTTCCAG---TGT--ATCTCTAAAG-TACCTCTAACTA-ACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : AAA----A-TGTAA-C------TTGAAA--AG-ATAAA--TT--TA----AATAATTCC-----T-AAA-ATAAT--GAAA-------ACAAAC-AA---AG-T-A-T-A-TT-T--CAA-----C-T-----------ATA-GG--TTAAGCT-GAAG-CA-
gi|12 : ggaAT--GA-ATG-TT-TGTCCCG---CGT--A-CTCTAAAG-T--agcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAAact
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--CA--CGCC--A--CA---AGT-----GATCATTTCAT-------CATTC-GGGGCTGTC-GG-GAAA-A-------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----AG-------CTG-GAAA-AA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AA-T-A-TG-TTTCCAG---CGT--A-CTTTAA------------TGT-ACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAA------C---------------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AA-T-A-TT-TTTCCAG---CGT--A--TCTAAAT-T--CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TA-TT-TTTCCAG---CGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA-C-A-TTAT-TATAAA-ATAATTT---TGCAAGAGTTGTCTCAA-TTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTTGG-TG-AGAATT----AGCA--TA--CTAC--AACC----AGT-----GA-----TCATTTCAT--CATTCAGGGGTTGTC-GG-GAAA-A-------------ATTC-ACAATCGAA-T----------ATAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA---TACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA--------AA-TTGG-CT------ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TT--TATG--------------------------------A--T-CGGGGT--C-AAGC-----------------------------TAGAAG--CA-ATAAA--TT--GA----AATAATTCC-----T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-T--TTCCAGCGT-ACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : attAACGT-ACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT---GAAT-AA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAAC-AGTCATGTATGAA-TCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTA---G--C----AGA-----AAC----TCAT-------C--TC-CGAGTTGTC-GG-CAAA-C-------------CTT--AAAATT---------------AT--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA---GACT-CCGT--AAATTGCT---TA-AGTTTG-G-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--G----TAA---TGGATTT--C-GATCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATT--TATGT--TAAAT---TGATATG----AATGAT-TTGA--TTCGGCGT--C-AACAGCGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AG-----AATAATTCCCT---T-AAACATACTA-GAAA-------ACAAACAAA---AA-T-ACT-A-TT-TCATAA-----TATAAGTA-T--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCGAACGT-ACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CA--TTA---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTAC-------------------A-----TCAT-------C------GGGTTGTC-GG-AAAATA-------------TCTC-AAAATT----CACGATCAA--AT--T--AATGACGTAGT-TATACTAGC---TAA-AA---TACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATG----TAAA-TTG----T--T-AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TT--TATGCAGTAAATGTGT-ATGTGGCAGAAT-ATGTTGA--ATCGAGGA--G-ATACACCCGGTAAA----CACGTAGGC------TAGAAG--AGGATAAAGCTG-AGA----AGTAATTCGCCGTGT-GAA-ACTGT--GAAATCACAGTACATAC-AATTTAA---A-T-C-TC-C--TAAACAGGTATA--TATTGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GA-ACAATT-TTTCCAGAGCCGTTTC-CTCTAAAG-TT-CTCTAACGT-GCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA-C-A-TCAT-TATGAA-ATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC-----C----AG------AA------CAT-------CATTC-GCGGTTGTC-GG-CAAA-A-------------CTTC-AAAATT---------------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---GACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-G----T-AA-TTGA-TTT--CGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTT--TATGT--TAAATG--T-AT-TG----AATGAT-TTGA--TTCGACGT--CAAAGCACGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AGA----AATAATTTCCC---T-AAA-ATACTCAGAAA-------ACAAAC-AA---AA-TCA-T-A-TT-C--TAA-----TATA--AATT----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-TATAAA--TA-TTT---TGCAATAG-----T--A-T-GTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTTG--TA-AGAATTT---AG-A--TA---TAC--A--CC---AGTGGATCAT-----TCAT-------CATCC-GGGGTTGTCGGG-GAAA-A-------------CTTCAAAAATT----CACAATCGATTAT--TGCATT----CAGT-TA-AC-AGC---TAA-AA---TACT-CTGTA-AAATTGCT---g
gi|6 : -AAAATTGCTAC----------AT--TGCTGT----CAA---A-AACAGC--ATGA-AA---CAAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---G----TAAAATTGG-CT-----AGTTTCA-TACA---CC--TGATAATAC----------------------------TGC--TATAT---T--TATG----A-------------TCGGGAT--C-AAGCG---G-TAAA----C-CGTAG-C------TAGAAGGCCA-ATAAA--TT--GA----ATTAATTCC-------AAA-ATACT--GAAA-------AC-AAC-AA---AATT-A-T-ATTT-C--TAA-----TAT---TATT--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattcacaatcgattattgcattcagttaacagctaaaatactctgtAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG-GAAT-AAATAACGATGAATTCTAAG-TTAAT-ACAACAG--ATTA--TCTAT---TAT-------------------T-TATA----TACTTT-----AAATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--CCAGAAGT-----GATCAT-TCAT-------CATTC-GGGGTTGTC-GG-AAAA-A-------------CTT--A------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-A----TA---TTAG-TTT-----GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TT--CA--A--TAAAG---T-AAATA----AGT-AT-C-G-----CAGGAT--C-AAGCG---G-TAAA----T-CGTAG-T------T-GAAG--CA-ATAAA--TT--GA----AATAATTTTCC---T-AAA--TACT--GAAA-------ACAAAC-AA---AA-T-A-T-ATTT-C--TAA-----TATA--TATT--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC----------TTTAGAGT-ACTTT-A------------GAGT-AA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGA-TTA-TCTT-TATTTATATACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-----GA-----TCATTTCA---CATTC-GGGTTAGTC-GG-AAAA-A-------------CTT-----------------------AT--TGCAGT----TAA--------AAC--TTAA-AA---TACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-G----T----TTTG-TTTTCC-AGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CT--T------CAAAT---A-A-GTA----AAT-AA-T--A--ATCGGA-T--C-AAGCG---G-TAAAA---T-CGTAG-C------T-GAAG--CA-ATAAA--TT--GA----AATAATTCCTA---T-A----TACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA-C-T-TAAT-TATAAA-ATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 11 11111 11 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444 111 888888888888888888888888888888888888888 111111111 111 1111 11 2222 1111 111111111 22222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222 22 11111 11 1111111 111 1111 11111 11 111 222 2222222222
lowQualScore : 5 5 77777777777 5 55 7777 0 5 5 5 3 0 5 0 5 5 777 0 11 55 0 0 999 3 66666 1 5 1 00 4 3333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777 777 2 8888 4 4 777 1 66 66 22222222222222222222222222222222 0 4 4 000 4 444444444444444444444444444444444444444 66 0 444444444 4 44 000 4 3333 4 66 888 8 777 55 99 6 99 6 0000 6 1 5 0 2222 0 5 5 666666666 00000 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 66 5 999999999999999999999999 4 4 66 4 66 22 9999 99999 4 4 00 4444444 4 222 555 4 4 8 0000 00000 666 666 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 3 3 666 55 3 5555555555 3 3 8888 44 555 3 88 3
lowQualScore : . . ........... . .. .... . . . . . . . . . . ... . .. .. . . ... . ..... . . . .. . .... .................................................................................................................................................................... ... ... . .... . . ... . .. .. ................................ . . . ... . ....................................... .. . ......... . .. ... . .... . .. ... . ... .. .. . .. . .... . . . . .... . . . ......... ..... . ............................................................................................................................. . .. . ........................ . . .. . .. .. .... ..... . . .. ....... . ... ... . . . .... ..... ... ... . .. . .. . . . .. .... . ... . . . . .. .. ... . . ... .. . .......... . . .... .. ... . .. .
lowQualScore : 0 0 55555555555 0 11 6666 1 0 0 0 2 8 0 4 0 0 888 4 99 66 4 1 999 0 22222 0 7 7 99 9 6666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 000 3 5555 0 0 888 1 11 11 99999999999999999999999999999999 8 0 0 333 0 555555555555555555555555555555555555555 11 1 444444444 4 66 999 4 1111 4 33 888 0 333 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 99 0 666666666666666666666666 4 8 11 4 11 77 4444 11111 4 4 66 4444444 4 222 333 4 4 9 3333 00000 333 444 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 00 666 6 6 444 00 6 2222222222 3 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TT--TATGN--TAAAT---T-ATATG----AAT-AT-TTGA---TCGGGGT--C-AAGCGCGCG-TAAA----C-CG------TAG-CTAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TT--TATGN--TAAAT---T-ATATG----AAT-AT-TTGA--TTCGGGGT--C-AAGCGCGCG-TAAA----C-CG------TAG-CTAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTTGT-TG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTTGG-TGCAGAATTTTTGAGCAGTTGAGCTACGGA--C----CGT-GA-----TCATGTTCATCCATTC-GGGGTTGTC-GGAG-AAA-ATGTCCATAGGAAGTTTC-ACAATT----CGAATAG----AT--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-GGGGACAAG-TTTG-GCT--C-AGTC----------GCC--CGA-AGTACC-C---------------ACC-TTAGTAGGG--GGGAT---CAATACC----GCT-AT-CTGATTTTTAGGATCGC-AAG-GCGGG-GAGAAGTTC-CGCGGCCGTAG-CTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-ATACT--AAGA-------Aatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattAA-----GATA--TATT--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AA-T-A-TT-TTTCCAG---TGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAT--TCTG---T-TTAggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaAGAC-AAT--AA-T-G-TTA-TT-T--AAG-----TATA--TATA--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GA--TA-TTATTTCCAG---TGT--ATCTCTAAAG-TACCTCTAACTA-ACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : AAA----A-TG------TAA-CTTGAAA--AG-ATAAA--TT--TA----AATAATTCC-----T-AAA-ATAAT--GAAA-------ACAAAC-AA---AG-T-A-T-A-TT-T--CAA-----C-T-----------ATA-GG--TTAAGCT-GAAG-CA-
gi|12 : ggaAT--GA-ATG-TT-TGTCCCG---CGT--A-CTCTAAAG-T--agcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAAact
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--CA--CGCC--A--CA---AGT-GATCATTTCAT-------CATTC-GGGGCTGTC-GG-G-AAA-A-------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----AG-------CTG-GAAA-AA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AA-T-A-TG-TTTCCAG---CGT--A-CTTTAA------------TGT-ACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAA------C---------------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AA-T-A-TT-TTTCCAG---CGT--A--TCTAAAT-T--CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TA-TT-TTTCCAG---CGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA-C-A-TTAT-TATAAA-ATAATTT---TGCAAGAGTTGTCTCAA-TTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTTGG-TG-AGAATT----AGCA--TA--CTAC--AACC----AGT-GA-----TCATTTCAT--CATTCAGGGGTTGTC-GG-G-AAA-A-------------ATTC-ACAATCGAA-T----------ATAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA---TACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA--------AA-TTGG-CT------ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TT--TATGA--T---------------------------------CGGGGT--C-AAGC-----------------------------TAGAAG--CA-ATAAA--TT--GA----AATAATTCC-----T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-T--TTCCAGCGT-ACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : attAACGT-ACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT---GAAT-AA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAAC-AGTCATGTATGAA-TCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTA---G--C----AGA-AAC----TCAT-------C--TC-CGAGTTGTC-GG-C-AAA-C-------------CTT--AAAATT---------------AT--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA---GACT-CCGT--AAATTGCT---TA-AGTTTG-G-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--G----TAA---TGGATTT--C-GATCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATT--TATGT--TAAAT---TGATATG----AATGAT-TTGA--TTCGGCGT--C-AACAGCGCG-T-AA----C-CG------TAG-CTAGAAG--CA-ATAAC--TT-AG-----AATAATTCCCT---T-AAACATACTA-GAAA-------ACAAACAAA---AA-T-ACT-A-TT-TCATAA-----TATAAGTA-T--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCGAACGT-ACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CA--TTA---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTAC---------------A-----TCAT-------C------GGGTTGTC-GG-A-AAATA-------------TCTC-AAAATT----CACGATCAA--AT--T--AATGACGTAGT-TATACTAGC---TAA-AA---TACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATG----TAAA-TTG----T--T-AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TT--TATGCAGTAAATGTGT-ATGTGGCAGAAT-ATGTTGA--ATCGAGGA--G-ATACACCCGGTAAA----CACG------TAGGCTAGAAG--AGGATAAAGCTG-AGA----AGTAATTCGCCGTGT-GAA-ACTGT--GAAATCACAGTACATAC-AATTTAA---A-T-C-TC-C--TAAACAGGTATA--TATTGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GA-ACAATT-TTTCCAGAGCCGTTTC-CTCTAAAG-TT-CTCTAACGT-GCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA-C-A-TCAT-TATGAA-ATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC-----C----A---GA-----ACAT-------CATTC-GCGGTTGTC-GG-C-AAA-A-------------CTTC-AAAATT---------------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---GACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-G----T-AA-TTGA-TTT--CGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTT--TATGT--TAAATG--T-AT-TG----AATGAT-TTGA--TTCGACGT--CAAAGCACGCG-T-AA----C-CG------TAG-CTAGAAG--CA-ATAAC--TT-AGA----AATAATTTCCC---T-AAA-ATACTCAGAAA-------ACAAAC-AA---AA-TCA-T-A-TT-C--TAA-----TATA--AATT----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-TATAAA--TA-TTT---TGCAATAG-----T--A-T-GTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTTG--TA-AGAATTT---AG-A--TA---TAC--A--CC---AGT-GGATCATTCAT-------CATCC-GGGGTTGTCGGG-G-AAA-A-------------CTTCAAAAATT----CACAATCGATTAT--TGCATT----CAGT-TA-AC-AGC---TAA-AA---TACT-CTGTA-AAATTGCT---g
gi|6 : C--A--C----AATCGA-----TTATTG-----CATTC-AG--TTAAC-AG-CTAAA-ATACT---------CTGT-AAAATTGCTAC----------AT--TGCTGT----CAA---A-AACAGC--ATGA-AA---CAAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---G----TAAAATTGG-CT-----AGTTTCA-TACA---CC--TGATAATAC----------------------------TGC--TATAT---T--TATG----A-------------TCGGGAT--C-AAGCG---G-TAAA----C-CG------TAG-CTAGAAGGCCA-ATAAA--TT--GA----ATTAATTCC-------AAA-ATACT--GAAA-------AC-AAC-AA---AATT-A-T-ATTT-C--TAA-----TAT---TATT--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG-GAAT-AAATAACGATGAATTCTAAG-TTAAT-ACAACAG--ATTA--TCTAT---TAT-------------------T-TATA----TACTTT-----AAATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--CCAGAAGT-GATCAT-TCAT-------CATTC-GGGGTTGTC-GG-A-AAA-A-------------CTT--A------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-A----TA---TTAG-TTT-----GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TT--CA--A--TAAAG---T-AAATA----AGT-AT-C-G-----CAGGAT--C-AAGCG---G-TAAA----T-CG------TAG-TT-GAAG--CA-ATAAA--TT--GA----AATAATTTTCC---T-AAA--TACT--GAAA-------ACAAAC-AA---AA-T-A-T-ATTT-C--TAA-----TATA--TATT--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC----------TTTAGAGT-ACTTT-A------------GAGT-AA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGA-TTA-TCTT-TATTTATATACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCATTTCA---CATTC-GGGTTAGTC-GG-A-AAA-A-------------CTT-----------------------AT--TGCAGT----TAA--------AAC--TTAA-AA---TACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-G----T----TTTG-TTTTCC-AGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CT--T------CAAAT---A-A-GTA----AAT-AA-T--A--ATCGGA-T--C-AAGCG---G-TAAAA---T-CG------TAG-CT-GAAG--CA-ATAAA--TT--GA----AATAATTCCTA---T-A----TACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA-C-T-TAAT-TATAAA-ATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 11 11111 11 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444 111 888888888888888888888888888888888888888 111111111 111 1111 11 2222 1111 111111111 22222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222222222 111111 22 11111 11 1111111 111 1111 11111 11 111 222 2222222222
lowQualScore : 5 5 77777777777 5 55 7777 0 5 5 5 3 0 5 0 5 5 777 0 11 55 0 0 999 3 66666 1 5 1 00 4 3333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777 777 2 8888 4 4 777 1 66 66 22222222222222222222222222222222 0 4 4 000 4 444444444444444444444444444444444444444 66 0 444444444 4 44 000 4 3333 4 4 888 8 1 6 7 55 99 6 99 6 0000 6 1 5 0 2222 0 5 5 666666666 00000 5 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 5 9999999999999999 4 222222 4 66 4 66 22 9999 99999 4 4 00 4444444 4 222 555 4 4 8 0000 00000 666 666 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 3 3 666 55 3 5555555555 3 3 8888 44 555 3 88 3
lowQualScore : . . ........... . .. .... . . . . . . . . . . ... . .. .. . . ... . ..... . . . .. . .... .................................................................................................................................................................... ... ... . .... . . ... . .. .. ................................ . . . ... . ....................................... .. . ......... . .. ... . .... . . ... . . . . .. .. . .. . .... . . . . .... . . . ......... ..... . ................................................................................................................................... ... . ................ . ...... . .. . .. .. .... ..... . . .. ....... . ... ... . . . .... ..... ... ... . .. . .. . . . .. .... . ... . . . . .. .. ... . . ... .. . .......... . . .... .. ... . .. .
lowQualScore : 0 0 55555555555 0 11 6666 1 0 0 0 2 8 0 4 0 0 888 4 99 66 4 1 999 0 22222 0 7 7 99 9 6666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 000 3 5555 0 0 888 1 11 11 99999999999999999999999999999999 8 0 0 333 0 555555555555555555555555555555555555555 11 1 444444444 4 66 999 4 1111 4 4 888 0 5 7 3 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 000 0 5555555555555555 4 888888 8 11 4 11 77 4444 11111 4 4 66 4444444 4 222 333 4 4 9 3333 00000 333 444 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 00 666 6 6 444 00 6 2222222222 3 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCGGGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATATG----AAT-AT-TT--GA-TCGGGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTTGT-TG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTTGG-TGCAGAATTTTTGAGCAGTTGAGCTACGGA--C----CGT-GA-----TCATGTTCATCCATTC-GGGGTTGTC-GGAG-AAA-ATGTCCATAGGAAGTTTC-ACAATT----CGAATAG----AT--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-GGGGACAAG-TTTG-GCT--C-AGTC----------GCC--CGA-AGTACC-C---------------ACC-TTAGTAGGGGGGA--TCAATACCGCT-ATCTG-----AT-TT-TTAGGA-TCG----C-AAG-GCGGG-GAGAAGTTC-CGCGG-CCGTAGCTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-ATACT--AAGA-------Aatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattAA-----GATA--TATT--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AA-T-A-TT-TTTCCAG---TGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAT--TCTG---T-TTAggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaAGAC-AAT--AA-T-G-TTA-TT-T--AAG-----TATA--TATA--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GA--TA-TTATTTCCAG---TGT--ATCTCTAAAG-TACCTCTAACTA-ACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : AAA----A-TGTAA-C------TTGAAA--AG-ATAAA--TT--TA----AATAATTCC-----T-AAA-ATAAT--GAAA-------ACAAAC-AA---AG-T-A-T-A-TT-T--CAA-----C-T-----------ATA-GG--TTAAGCT-GAAG-CA-
gi|12 : ggaAT--GA-ATG-TT-TGTCCCG---CGT--A-CTCTAAAG-T--agcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAAact
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--CA--CGCC--A--CA---AGT-GATCATTTCAT-------CATTC-GGGGCTGTC-GG-G-AAA-A-------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----AG-------CTG-GAAA-AA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AA-T-A-TG-TTTCCAG---CGT--A-CTTTAA------------TGT-ACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAA------C---------------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AA-T-A-TT-TTTCCAG---CGT--A--TCTAAAT-T--CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TA-TT-TTTCCAG---CGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA-C-A-TTAT-TATAAA-ATAATTT---TGCAAGAGTTGTCTCAA-TTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTTGG-TG-AGAATT----AGCA--TA--CTAC--AACC----AGT-GA-----TCATTTCAT--CATTCAGGGGTTGTC-GG-G-AAA-A-------------ATTC-ACAATCGAA-T----------ATAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA---TACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA--------AA-TTGG-CT------ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TTTAT------G------------------------------------A-TCGGGGTC-AAGC-----------------------------TAGAAG--CA-ATAAA--TT--GA----AATAATTCC-----T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-T--TTCCAGCGT-ACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : attAACGT-ACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT---GAAT-AA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAAC-AGTCATGTATGAA-TCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTA---G--C----AGA-AAC----TCAT-------C--TC-CGAGTTGTC-GG-C-AAA-C-------------CTT--AAAATT---------------AT--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA---GACT-CCGTA-AA-TTGCT---TA-AGTTTGGT-T-CCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--G----TAA---TGGATTT--C-GATCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATTTAT------GT--TAAAT-----TGATATG----AATGAT-TT--GATTCGGCGTC-AACAGCGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AG-----AATAATTCCCT---T-AAACATACTA-GAAA-------ACAAACAAA---AA-T-ACT-A-TT-TCATAA-----TATAAGTA-T--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCGAACGT-ACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CA--TTA---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTAC---------------A-----TCAT-------C------GGGTTGTC-GG-A-AAATA-------------TCTC-AAAATT----CACGATCAA--AT--T--AATGACGTAGT-TATACTAGC---TAA-AA---TACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATG----TAAA-TTG----T--T-AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TTTAT------GCAGTAAATGTG--T-ATGTGGCAGAAT-ATGTT--GAATCGAGGAG-ATACACCCGGTAAA----CACGTAGGC------TAGAAG--AGGATAAAGCTG-AGA----AGTAATTCGCCGTGT-GAA-ACTGT--GAAATCACAGTACATAC-AATTTAA---A-T-C-TC-C--TAAACAGGTATA--TATTGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GA-ACAATT-TTTCCAGAGCCGTTTC-CTCTAAAG-TT-CTCTAACGT-GCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA-C-A-TCAT-TATGAA-ATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC-----C----A---GA-----ACAT-------CATTC-GCGGTTGTC-GG-C-AAA-A-------------CTTC-AAAATT---------------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---GACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-G----T-AA-TTGA-TTT--CGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTTTAT------GT--TAAATG----T-AT-TG----AATGAT-TT--GATTCGACGTCAAAGCACGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AGA----AATAATTTCCC---T-AAA-ATACTCAGAAA-------ACAAAC-AA---AA-TCA-T-A-TT-C--TAA-----TATA--AATT----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-TATAAA--TA-TTT---TGCAATAG-----T--A-T-GTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTTG--TA-AGAATTT---AG-A--TA---TAC--A--CC---AGT-GGATCATTCAT-------CATCC-GGGGTTGTCGGG-G-AAA-A-------------CTTCAAAAATT----CACAATCGATTAT--TGCATT----CAGT-TA-AC-AGC---TAA-AA---TACT-CTGTA-AAATTGCT---g
gi|6 : C--A--C----AATCGA-----TTATTG-----CATTC-AG--TTAAC-AG-CTAAA-ATACT---------CTGT-AAAATTGCTAC----------AT--TGCTGT----CAA---A-AACAGC--ATGA-AA---CAAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---G----TAAAATTGG-CT-----AGTTTCA-TACA---CC--TGATAATAC--------------------------T------GC--TATAT-----T------------T-AT-----GA-TCGGGATC-AAGCG---G-TAAA----C-CGTAG-C------TAGAAGGCCA-ATAAA--TT--GA----ATTAATTCC-------AAA-ATACT--GAAA-------AC-AAC-AA---AATT-A-T-ATTT-C--TAA-----TAT---TATT--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG-GAAT-AAATAACGATGAATTCTAAG-TTAAT-ACAACAG--ATTA--TCTAT---TAT-------------------T-TATA----TACTTT-----AAATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--CCAGAAGT-GATCAT-TCAT-------CATTC-GGGGTTGTC-GG-A-AAA-A-------------CTT--A------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-A----TA---TTAG-TTT-----GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TTCA--------A--TAAAG-----T-AAATA----AGT-AT-C---G---CAGGATC-AAGCG---G-TAAA----T-CGTAG-T------T-GAAG--CA-ATAAA--TT--GA----AATAATTTTCC---T-AAA--TACT--GAAA-------ACAAAC-AA---AA-T-A-T-ATTT-C--TAA-----TATA--TATT--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC----------TTTAGAGT-ACTTT-A------------GAGT-AA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGA-TTA-TCTT-TATTTATATACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCATTTCA---CATTC-GGGTTAGTC-GG-A-AAA-A-------------CTT-----------------------AT--TGCAGT----TAA--------AAC--TTAA-AA---TACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-G----T----TTTG-TTTTCC-AGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CTT------------CAAAT-----A-A-GTA----AAT-AA-T---AA-TCGGA-TC-AAGCG---G-TAAAA---T-CGTAG-C------T-GAAG--CA-ATAAA--TT--GA----AATAATTCCTA---T-A----TACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA-C-T-TAAT-TATAAA-ATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 11 11111 11 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444 111 888888888888888888888888888888888888888 111111111 111 1111 11 2222 1111 111111111 22222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 2222222222222222 111111 22 11111 11 1111111 111 1111 11111 11 111 222 2222222222
lowQualScore : 5 5 77777777777 5 55 7777 0 5 5 5 3 0 5 0 5 5 777 0 11 55 0 0 999 3 66666 1 5 1 00 4 3333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777 777 2 8888 4 4 777 1 66 66 22222222222222222222222222222222 0 4 4 000 4 444444444444444444444444444444444444444 66 0 444444444 4 44 000 4 3333 4 4 888 8 1 6 7 55 99 6 99 6 0000 6 1 5 0 2222 0 5 5 666666666 00000 5 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 5 9999999999999999 4 222222 4 66 4 66 22 9999 99999 4 4 00 4444444 4 222 555 4 4 8 0000 00000 666 666 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 3 3 666 55 3 5555555555 3 3 8888 44 555 3 88 3
lowQualScore : . . ........... . .. .... . . . . . . . . . . ... . .. .. . . ... . ..... . . . .. . .... .................................................................................................................................................................... ... ... . .... . . ... . .. .. ................................ . . . ... . ....................................... .. . ......... . .. ... . .... . . ... . . . . .. .. . .. . .... . . . . .... . . . ......... ..... . ................................................................................................................................... ..... . ................ . ...... . .. . .. .. .... ..... . . .. ....... . ... ... . . . .... ..... ... ... . .. . .. . . . .. .... . ... . . . . .. .. ... . . ... .. . .......... . . .... .. ... . .. .
lowQualScore : 0 0 55555555555 0 11 6666 1 0 0 0 2 8 0 4 0 0 888 4 99 66 4 1 999 0 22222 0 7 7 99 9 6666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 000 3 5555 0 0 888 1 11 11 99999999999999999999999999999999 8 0 0 333 0 555555555555555555555555555555555555555 11 1 444444444 4 66 999 4 1111 4 4 888 0 5 7 3 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 99999 0 5555555555555555 4 888888 8 11 4 11 77 4444 11111 4 4 66 4444444 4 222 333 4 4 9 3333 00000 333 444 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 00 666 6 6 444 00 6 2222222222 3 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCG--GGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCG--GGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTTGT-TG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTTGG-TGCAGAATTTTTGAGCAGTTGAGCTACGGA--C----CGT-GA-----TCATGTTCATCCATTC-GGGGTTGTC-GGAG-AAA-ATGTCCATAGGAAGTTTC-ACAATT----CGAATAG----AT--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-GGGGACAAG-TTTG-GCT--C-AGTC----------GCC--CGA-AGTACC-C---------------ACC-TTAGTAGGGGGGA--TCAATACCGCT-ATCTG-----AT-TT-TTAGGA-TCG------C-AAG-GCGGG-GAGAAGTTC-CGCGG-CCGTAGCTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-ATACT--AAGA-------Aatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattAA-----GATA--TATT--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AA-T-A-TT-TTTCCAG---TGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAT--TCTG---T-TTAggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaAGAC-AAT--AA-T-G-TTA-TT-T--AAG-----TATA--TATA--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GA--TA-TTATTTCCAG---TGT--ATCTCTAAAG-TACCTCTAACTA-ACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : AAA----A-TGTAA-C------TTGAAA--AG-ATAAA--TT--TA----AATAATTCC-----T-AAA-ATAAT--GAAA-------ACAAAC-AA---AG-T-A-T-A-TT-T--CAA-----C-T-----------ATA-GG--TTAAGCT-GAAG-CA-
gi|12 : ggaAT--GA-ATG-TT-TGTCCCG---CGT--A-CTCTAAAG-T--agcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAAact
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--CA--CGCC--A--CA---AGT-GATCATTTCAT-------CATTC-GGGGCTGTC-GG-G-AAA-A-------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----AG-------CTG-GAAA-AA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AA-T-A-TG-TTTCCAG---CGT--A-CTTTAA------------TGT-ACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAA------C---------------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AA-T-A-TT-TTTCCAG---CGT--A--TCTAAAT-T--CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TA-TT-TTTCCAG---CGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA-C-A-TTAT-TATAAA-ATAATTT---TGCAAGAGTTGTCTCAA-TTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTTGG-TG-AGAATT----AGCA--TA--CTAC--AACC----AGT-GA-----TCATTTCAT--CATTCAGGGGTTGTC-GG-G-AAA-A-------------ATTC-ACAATCGAA-T----------ATAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA---TACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA--------AA-TTGG-CT------ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TTTAT------G------------------------------------A-TCG--GGGTC-AAGC-----------------------------TAGAAG--CA-ATAAA--TT--GA----AATAATTCC-----T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-T--TTCCAGCGT-ACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : attAACGT-ACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT---GAAT-AA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAAC-AGTCATGTATGAA-TCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTA---G--C----AGA-AAC----TCAT-------C--TC-CGAGTTGTC-GG-C-AAA-C-------------CTT--AAAATT---------------AT--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA---GACT-CCGTA-AA-TTGCT---TA-AGTTTGGT-T-CCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--G----TAA---TGGATTT--C-GATCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATTTAT------GT--TAAAT-----TGATATG----AATGAT-TT--GATTCG--GCGTC-AACAGCGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AG-----AATAATTCCCT---T-AAACATACTA-GAAA-------ACAAACAAA---AA-T-ACT-A-TT-TCATAA-----TATAAGTA-T--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCGAACGT-ACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CA--TTA---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTAC---------------A-----TCAT-------C------GGGTTGTC-GG-A-AAATA-------------TCTC-AAAATT----CACGATCAA--AT--T--AATGACGTAGT-TATACTAGC---TAA-AA---TACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATG----TAAA-TTG----T--T-AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TTTAT------GCAGTAAATGTG--T-ATGTGGCAGAAT-ATGTT--GAATCG--AGGAG-ATACACCCGGTAAA----CACGTAGGC------TAGAAG--AGGATAAAGCTG-AGA----AGTAATTCGCCGTGT-GAA-ACTGT--GAAATCACAGTACATAC-AATTTAA---A-T-C-TC-C--TAAACAGGTATA--TATTGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GA-ACAATT-TTTCCAGAGCCGTTTC-CTCTAAAG-TT-CTCTAACGT-GCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA-C-A-TCAT-TATGAA-ATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC-----C----A---GA-----ACAT-------CATTC-GCGGTTGTC-GG-C-AAA-A-------------CTTC-AAAATT---------------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---GACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-G----T-AA-TTGA-TTT--CGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTTTAT------GT--TAAATG----T-AT-TG----AATGAT-TT--GATTCG--ACGTCAAAGCACGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AGA----AATAATTTCCC---T-AAA-ATACTCAGAAA-------ACAAAC-AA---AA-TCA-T-A-TT-C--TAA-----TATA--AATT----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-TATAAA--TA-TTT---TGCAATAG-----T--A-T-GTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTTG--TA-AGAATTT---AG-A--TA---TAC--A--CC---AGT-GGATCATTCAT-------CATCC-GGGGTTGTCGGG-G-AAA-A-------------CTTCAAAAATT----CACAATCGATTAT--TGCATT----CAGT-TA-AC-AGC---TAA-AA---TACT-CTGTA-AAATTGCT---g
gi|6 : C--A--C----AATCGA-----TTATTG-----CATTC-AG--TTAAC-AG-CTAAA-ATACT---------CTGT-AAAATTGCTAC----------AT--TGCTGT----CAA---A-AACAGC--ATGA-AA---CAAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---G----TAAAATTGG-CT-----AGTTTCA-TACA---CC--TGATAATAC--------------------------T------GC--TATAT-----T------------T-AT-----GA-TCG--GGATC-AAGCG---G-TAAA----C-CGTAG-C------TAGAAGGCCA-ATAAA--TT--GA----ATTAATTCC-------AAA-ATACT--GAAA-------AC-AAC-AA---AATT-A-T-ATTT-C--TAA-----TAT---TATT--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG-GAAT-AAATAACGATGAATTCTAAG-TTAAT-ACAACAG--ATTA--TCTAT---TAT-------------------T-TATA----TACTTT-----AAATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--CCAGAAGT-GATCAT-TCAT-------CATTC-GGGGTTGTC-GG-A-AAA-A-------------CTT--A------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-A----TA---TTAG-TTT-----GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TTCA--------A--TAAA----------GTA----AAT-AA-GT---A-TCGCAGGATC-AAGCG---G-TAAA----T-CGTAG-T------T-GAAG--CA-ATAAA--TT--GA----AATAATTTTCC---T-AAA--TACT--GAAA-------ACAAAC-AA---AA-T-A-T-ATTT-C--TAA-----TATA--TATT--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC----------TTTAGAGT-ACTTT-A------------GAGT-AA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGA-TTA-TCTT-TATTTATATACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCATTTCA---CATTC-GGGTTAGTC-GG-A-AAA-A-------------CTT-----------------------AT--TGCAGT----TAA--------AAC--TTAA-AA---TACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-G----T----TTTG-TTTTCC-AGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CTT------------CAAAT-----A-A-GTA----AAT-AA-T---AA-TCG--GA-TC-AAGCG---G-TAAAA---T-CGTAG-C------T-GAAG--CA-ATAAA--TT--GA----AATAATTCCTA---T-A----TACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA-C-T-TAAT-TATAAA-ATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 11 11111 11 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444 111 888888888888888888888888888888888888888 111111111 111 1111 11 2222 1111 111111111 22222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 2222222222222222 111111 22 11111 11 1111111 111 1111 11111 11 111 222 2222222222
lowQualScore : 5 5 77777777777 5 55 7777 0 5 5 5 3 0 5 0 5 5 777 0 11 55 0 0 999 3 66666 1 5 1 00 4 3333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777 777 2 8888 4 4 777 1 66 66 22222222222222222222222222222222 0 4 4 000 4 444444444444444444444444444444444444444 66 0 444444444 4 44 000 4 3333 4 4 888 8 1 6 7 55 99 6 99 6 0000 6 1 5 0 2222 0 5 5 666666666 00000 5 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 5 9999999999999999 4 222222 4 66 4 66 22 9999 99999 4 4 00 4444444 4 222 555 4 4 8 0000 00000 666 666 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 3 3 666 55 3 5555555555 3 3 8888 44 555 3 88 3
lowQualScore : . . ........... . .. .... . . . . . . . . . . ... . .. .. . . ... . ..... . . . .. . .... .................................................................................................................................................................... ... ... . .... . . ... . .. .. ................................ . . . ... . ....................................... .. . ......... . .. ... . .... . . ... . . . . .. .. . .. . .... . . . . .... . . . ......... ..... . ................................................................................................................................... ..... . ................ . ...... . .. . .. .. .... ..... . . .. ....... . ... ... . . . .... ..... ... ... . .. . .. . . . .. .... . ... . . . . .. .. ... . . ... .. . .......... . . .... .. ... . .. .
lowQualScore : 0 0 55555555555 0 11 6666 1 0 0 0 2 8 0 4 0 0 888 4 99 66 4 1 999 0 22222 0 7 7 99 9 6666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 000 3 5555 0 0 888 1 11 11 99999999999999999999999999999999 8 0 0 333 0 555555555555555555555555555555555555555 11 1 444444444 4 66 999 4 1111 4 4 888 0 5 7 3 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 99999 0 5555555555555555 4 888888 8 11 4 11 77 4444 11111 4 4 66 4444444 4 222 333 4 4 9 3333 00000 333 444 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 00 666 6 6 444 00 6 2222222222 3 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCG--GGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCG--GGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTTGT-TG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTTGG-TGCAGAATTTTTGAGCAGTTGAGCTACGGA--C----CGT-GA-----TCATGTTCATCCATTC-GGGGTTGTC-GGAG-AAA-ATGTCCATAGGAAGTTTC-ACAATT----CGAATAG----AT--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-GGGGACAAG-TTTG-GCT--C-AGTC----------GCC--CGA-AGTACC-C---------------ACC-TTAGTAGGGGGGA--TCAATACCGCT-ATCTG-----AT-TT-TTAGGA-TCG------C-AAG-GCGGG-GAGAAGTTC-CGCGG-CCGTAGCTAGAAG--CA-ACCAA--TTGAGACCATAATAAAT--CC---TAAAA-ATACT--AAGA-------Aatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattAA-----GATA--TATT--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AA-T-A-TT-TTTCCAG---TGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAT--TCTG---T-TTAggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaAGAC-AAT--AA-T-G-TTA-TT-T--AAG-----TATA--TATA--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GA--TA-TTATTTCCAG---TGT--ATCTCTAAAG-TACCTCTAACTA-ACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : AAA----A-TGTAA-C------TTGAAA--AG-ATAAA--TT--TA----AATAATTCC-----T-AAA-ATAAT--GAAA-------ACAAAC-AA---AG-T-A-T-A-TT-T--CAA-----C-T-----------ATA-GG--TTAAGCT-GAAG-CA-
gi|12 : ggaAT--GA-ATG-TT-TGTCCCG---CGT--A-CTCTAAAG-T--agcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAAact
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--CA--CGCC--A--CA---AGT-GATCATTTCAT-------CATTC-GGGGCTGTC-GG-G-AAA-A-------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----AG-------CTG-GAAA-AA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AA-T-A-TG-TTTCCAG---CGT--A-CTTTAA------------TGT-ACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAA------C---------------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AA-T-A-TT-TTTCCAG---CGT--A--TCTAAAT-T--CTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TA-TT-TTTCCAG---CGT--A-CTCT------------AACGT-ACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA-C-A-TTAT-TATAAA-ATAATTT---TGCAAGAGTTGTCTCAA-TTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTTGG-TG-AGAATT----AGCA--TA--CTAC--AACC----AGT-GA-----TCATTTCAT--CATTCAGGGGTTGTC-GG-G-AAA-A-------------ATTC-ACAATCGAA-T----------ATAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA---TACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA--------AA-TTGG-CT------ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TTTAT------G------------------------------------A-TCG--GGGTC-AAGC-----------------------------TAGAAG--CA-ATAAA--TT--GA----AATAATTCC-----T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatata-T--TTCCAGCGT-ACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : attAACGT-ACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT---GAAT-AA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAAC-AGTCATGTATGAA-TCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTA---G--C----AGA-AAC----TCAT-------C--TC-CGAGTTGTC-GG-C-AAA-C-------------CTT--AAAATT---------------AT--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA---GACT-CCGTA-AA-TTGCT---TA-AGTTTGGT-T-CCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--G----TAA---TGGATTT--C-GATCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATTTAT------GT--TAAAT-----TGATATG----AATGAT-TT--GATTCG--GCGTC-AACAGCGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AG-----AATAATTCCCT---T-AAACATACTA-GAAA-------ACAAACAAA---AA-T-ACT-A-TT-TCATAA-----TATAAGTA-T--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCGAACGT-ACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CA--TTA---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTAC---------------A-----TCAT-------C------GGGTTGTC-GG-A-AAATA-------------TCTC-AAAATT----CACGATCAA--AT--T--AATGACGTAGT-TATACTAGC---TAA-AA---TACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATG----TAAA-TTG----T--T-AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TTTAT------GCAGTAAATGTG--T-ATGTGGCAGAAT-ATGTT--GAATCG--AGGAG-ATACACCCGGTAAA----CACGTAGGC------TAGAAG--AGGATAAAGCTG-AGA----AGTAATTCGCCGTGT-GAA-ACTGT--GAAATCACAGTACATAC-AATTTAA---A-T-C-TC-C--TAAACAGGTATA--TATTGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GA-ACAATT-TTTCCAGAGCCGTTTC-CTCTAAAG-TT-CTCTAACGT-GCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA-C-A-TCAT-TATGAA-ATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC-----C----A---GA-----ACAT-------CATTC-GCGGTTGTC-GG-C-AAA-A-------------CTTC-AAAATT---------------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---GACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-G----T-AA-TTGA-TTT--CGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTTTAT------GT--TAAATG----T-AT-TG----AATGAT-TT--GATTCG--ACGTCAAAGCACGCG-T-AA----C-CGTAG-C------TAGAAG--CA-ATAAC--TT-AGA----AATAATTTCCC---T-AAA-ATACTCAGAAA-------ACAAAC-AA---AA-TCA-T-A-TT-C--TAA-----TATA--AATT----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGTT--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-TATAAA--TA-TTT---TGCAATAG-----T--A-T-GTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTTG--TA-AGAATTT---AG-A--TA---TAC--A--CC---AGT-GGATCATTCAT-------CATCC-GGGGTTGTCGGG-G-AAA-A-------------CTTCAAAAATT----CACAATCGATTAT--TGCATT----CAGT-TA-AC-AGC---TAA-AA---TACT-CTGTA-AAATTGCT---g
gi|6 : C--A--C----AATCGA-----TTATTG-----CATTC-AG--TTAAC-AG-CTAAA-ATACT---------CTGT-AAAATTGCTAC----------AT--TGCTGT----CAA---A-AACAGC--ATGA-AA---CAAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---G----TAAAATTGG-CT-----AGTTTCA-TACA---CC--TGATAATAC--------------------------T------GC--TATAT-----T------------T-AT-----GA-TCG--GGATC-AAGCG---G-TAAA----C-CGTAG-C------TAGAAGGCCA-ATAAA--TT--GA----ATTAATTCC-------AAA-ATACT--GAAA-------AC-AAC-AA---AATT-A-T-ATTT-C--TAA-----TAT---TATT--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG-GAAT-AAATAACGATGAATTCTAAG-TTAAT-ACAACAG--ATTA--TCTAT---TAT-------------------T-TATA----TACTTT-----AAATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--CCAGAAGT-GATCAT-TCAT-------CATTC-GGGGTTGTC-GG-A-AAA-A-------------CTT--A------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-A----TA---TTAG-TTT-----GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TTCA--------A--TAAA----------GTA----AAT-AA-GT---A-TCGCAGGATC-AAGCG---G-TAAA----T-CGTAG-T------T-GAAG--CA-ATAAA--TT--GA----AATAATTTTCC---T-AAA--TACT--GAAA-------ACAAAC-AA---AA-T-A-T-ATTT-C--TAA-----TATA--TATT--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC----------TTTAGAGT-ACTTT-A------------GAGT-AA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGA-TTA-TCTT-TATTTATATACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCATTTCA---CATTC-GGGTTAGTC-GG-A-AAA-A-------------CTT-----------------------AT--TGCAGT----TAA--------AAC--TTAA-AA---TACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-G----T----TTTG-TTTTCC-AGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CTT------------CAAAT-----A-A-GTA----AAT-AA-T---AA-TCG--GA-TC-AAGCG---G-TAAAA---T-CGTAG-C------T-GAAG--CA-ATAAA--TT--GA----AATAATTCCTA---T-A----TACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA-C-T-TAAT-TATAAA-ATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac
blockSeqs : A T TTTAGAGTATG T TT AGTT . . A A T G C T TGC C AT GCT T ACAG C G A TA A ATTC TATGTCCCATTATTTGTTTAGCGGATTCGTTCTAACTAAAACACATTCTTATATACTATTAAAGGGTTTTGCCATCACGAAT CTC . C ATAG G C . C . . ACCAGAAGTGATCATTCAT A G CT T CTTCAAAAATTCACAATCGATT AA GACGTAGT T CT T G T C T AAA T T C T GC . G . G C . G T . C . AATTTT GTT G TGTTATGTAAATTGTTAGTTTACACAGCACCGTTGCCACTACGACATAGTTAATTTTATGCAGTAAATGTGTATGTGGCAGAATATGTTGAA CAGGA A ACCCGGTAAACA G . T GC G GC A . CCGTG . C CA TCACAGT A TTT TC C . T TCA ACAGG AAG GGT T GA A GT T T G TC AGC T TAG T C A T GA GC TTT A A AGC TT T AGTACCTCT T C ACC TA TTA C TA C
blockSeqs : . . G . T AGT . . . A C . . . TT . TT GCT A TTA C . A T A T GCCTAGTTGTCTCTTTTTGTTTTTAGCGATGTTCTAACCATAAAACGGCATCCCGATT . . T . . . . C . . AACCAGTGATCATTTCAT . . G . TCTCAAAATTCACGATCAA . ATAGTC . CT T . G . . . . G . T C . . . . . . T . . . . TCAAT ATG . CATCAGTAATTGATTTCGAGTCTCTACAAACCTGTTACTACGCTTTTATTGTTTATGTTAAATGTATTGAATGATTTGAT GGG . GCGCGTAAC . . A . . . A . CT . . A . . . TT . . T TC . A A . . . A . . T G CA . TG . . . . . . TTT . . . . . AGTTCTCT . . TA . . . . .
blockSeqs : . . T . T ATT . . . A C . . . GC . CT GCT A CA C . A A C T TGTCACAATTATTTGATTTTAGCGATGTTCTAGGCCTAACCATAAAAGGCATTCTATT . . T . . . . C . . ACAAGTGATCATTTCAT . . G . TACTCTGTAAAATTGCTAC . TAGT . CT T . T . . . . T . T . . . . . . . T . . . . TCAAT TT . ATCGTAATGGATTTCGATCTCACAAACCTTTATTACGCTTTTATTATTTATGTTAAATTGATATGAATGATTTGAT GCG . ACGCGTAAC . . A . . . A . CC . . . . . . T . . . TC . A T . . . G . . . . C . . . . . . . . AT . . . . . AGTTCTCG . . AC . . . . .
blockSeqs : . . G . T AGT . . . A G . . . GC . TA TCT C CT A . T A C T GCCTAGTTGCTCTTTTTGTTTAGCGAGTTTCTAACCATTAAAACGCATCCCGATT . . T . . . . C . . ACCAGTGGATCATTCAT . . C . ATTCACAATCGAAT . TAGT . CT A . G . . . . C . . . . . . . . . T . . . . AATTG TT . TAAAAATATTAGTTTGTTTCCAGCTTGTTTCAAGGCTTTGGCAAATAATATCTTCAATAAAGTAAATAAGTA AGG . GGTAAAAT . . A . . . . . CC . . . . . . T . . . T . A T . . . G . . . . C . . . . . . . . AC . . . . . AGTTCTCT . . A . . . . .
blockSeqs : . . G . T AGT . . . A C . . . AC . TT . T . . . A . A . ACATATTTGTTTTTGCCATTCCGGATCCCCGATT . . T . . . . C . . ACAGTGATCATTTCA . . A . CTTCAAAATT . CAGT . AC T . T . . . T . . . . . . . . . G . . . . AAT TT . TATGAGTTTTGTTTTCCAGCTTGTTCAGGTTTGGCAATAATTATTCTTCAAATAAGTAAATAATAA ACG . GGTAAAC . . A . . . . . TA . . . . . . T . . . C . A T . . . G . . . . C . . . . . . . . T . . . . . AGTTCTCT . . A . . . . .
blockSeqs : . . T . . . . . . . . . . . GC . T . . . . . . . ACATTATTGTTTTTGGGCCATCCGGATCCCGATT . . T . . . . C . . ACAATCGATTATTG . . C . CTTAAAATT . CAA . C T . C . . . . . . . AAT G . TGCATGTAAAATTGGCTAGTTTCATACACCTGATAATACTGCTATATTTATGA GGA . GGTAAAT . . A . . . . . . . . . . . . T . . . C . A T . . . G . . . . C . . . . . . . . T . . . . . ATTCTCT . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . GCAGAAACTCAT . . G . CTTA . TAA . . . . T . . . . AA . . TGCATGAAATTGGCTATTTCATTACACTGAATACGCTATTATTTTTATGA GA . . . . . . . . . . . . . . . . . T . . . C . A T . . . T . . . . . . . . . . . . . T . . . . . C . . C . . . . .
blockSeqs : . . . . . . . . . . CAGAACAT . . A . CTT . T . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . T . . . . . . . . . . . . . T . . . . . . . . A . . . . .
blockSeqs : . . . . . . ATCAT . . A . . . . . . . . . . . . . . . . . . T . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AGT* GC* ** GCT *** *** ** ** ACAAGTGATCATTTCAT*************** G** CTTCAAAATT***************************** TAGT***** T** T*** ** ** **** **** AAT****** TT*** GGG** GGTAAAC********* ****** ** **** *** AGTTCTCT** **
originalCons : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTAC--A--C----AGT-GA-----TCAT-------CATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTC-AAAATT----C----------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA---NACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCG--GGGTC-AAGCGCGCG-TAAA----C-CGTAG-C------TAGAAG--CA-ATAAA--TT-AGA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAG-T--CTCTAACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
finalCons : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AATGC-AACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTTGG-TG-AGAATTT---AGCA--TA--CTACACAAGTGATCATTTCAT---------------CATTC-GGGGTTGTC-GGG--AAA-ACTTCAAAATT-----------------------------AT--TGCAGTTAGT-----TA-ACTAGCT--TAA-AAT---ACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-TAAT------ATGGTT---ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTAT------GN--TAAAT-----T-ATGTG----AAT-AT-TT--GA-TCGGGG--TC-AAGCGGTAAAC---------CGTAG-C------TAGAAG--CA-ATAAA--TT--GA----AATAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAGTTCTCT--AACGT-ACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222 1 11 11111 11 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111 111 888888888888888888888888888888888888888888888888 111111111 111 1111 11 2222 1111 111111111 22222 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 111 111111 11111 11 1111111 111 1111 11111 11 111 222 11111111111
lowQualScore : 5 5 77777777777 5 55 7777 0 5 5 5 3 0 5 0 5 5 777 0 11 55 0 0 999 3 66666 1 5 1 00 4 3333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 777 777 2 8888 4 4 777 1 66 66 4 9999999999999999999 0 77 4 4 000 4 000000000000000000000000000000000000000000000000 66 0 444444444 4 44 000 4 4444 4 4 888 8 1 6 7 55 99 6 99 6 0000 6 1 5 0 2222 0 5 5 666666666 00000 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333333 5 5 77 333 6 888 4 4 66 4 4 4 222222 66 99999 4 4 00 4444444 4 222 555 4 4 8 0000 00000 666 666 4 55 4 55 4 4 8 00 9999 3 111 3 3 3 3 44 55 444 3 3 666 55 3 33333333333 33 3 8888 44 555 3 88 3
lowQualScore : . . ........... . .. .... . . . . . . . . . . ... . .. .. . . ... . ..... . . . .. . .... .................................................................................................................................................................... ... ... . .... . . ... . .. .. . ................... . .. . . ... . ................................................ .. . ......... . .. ... . .... . . ... . . . . .. .. . .. . .... . . . . .... . . . ......... ..... . ......................................................................................................................... ........ . . .. ... . ... . . .. . . . ...... .. ..... . . .. ....... . ... ... . . . .... ..... ... ... . .. . .. . . . .. .... . ... . . . . .. .. ... . . ... .. . ........... .. . .... .. ... . .. .
lowQualScore : 0 0 55555555555 0 11 6666 1 0 0 0 2 8 0 4 0 0 888 4 99 66 4 1 999 0 22222 0 7 7 99 9 6666 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 000 3 5555 0 0 888 1 11 11 0 0000000000000000000 7 22 0 0 333 0 000000000000000000000000000000000000000000000000 11 1 444444444 4 66 999 4 0000 4 4 888 0 5 7 3 88 22 7 22 7 8888 7 0 7 6 1111 1 7 0 555555555 11111 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66666666 7 7 99 888 2 000 4 8 11 4 4 4 888888 11 11111 4 4 66 4444444 4 222 333 4 4 9 3333 00000 333 444 0 55 0 66 0 4 9 66 1111 6 444 6 6 6 6 66 00 222 6 6 444 00 6 33333333333 88 3 2222 66 888 3 66 6
consensus : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTT-GGTG-AGAATTT---AGCA--TA--CTA-C--AC---AAGTG-ATCAT-TTCATC-ATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTCAAA------------AT----T---------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA--T-ACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTATGC--TAAAT---T-ATGTG----AAT-AT-TTGA-TCG--GGG---T-C-A--AGCG---GTAAA-C-CGTAG-CTAGAAG--CA-ATAAA-TT-GA------AA--TAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAGT-TCTCTAACG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
Reference ( family-6115 ) : CTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAANAAA-C-A-TCAT-TATAAA-ATAATTT---TGCAATAG--GCCT--A-TTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTT-GGTG-AGAATTT---AGCA--TA--CTA-C--AC---AAGTG-ATCAT-TTCATC-ATTC-GGGGTTGTC-GG-G-AAA-A-------------CTTCAAA------------AT----T---------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA--T-ACT-CCGTA-AAATTGCT---TA-AGTTTGTT-TTCCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCNT-CAATAA----AAG-TAAA-T--A-AT---ATGG-T-T-ATAA-AT-GCATNA-G----TAAA-TTGG-TTT--C-AGTTTC--TACAG-ACC--TGNTANTACG-CTT--T---------TATT-TTTATGN--TAAAT---T-ATGTG----AAT-AT-TTGA-TCG--GGG---T-C-A--AGCG---GTAAA-C-CGTAG-CTAGAAG--CA-ATAAA-TT-GA------AA--TAATTCCCC---T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TT-C--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--GA-TTA-TT-TTTCCAG---CGT--A-CTCTAAAGT-TCTCTAACG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACC
gi|1 : TTT-----TAG--CG-A-T--GTT------CTAAA------------AC-----CA--T-A---------------G--AA-----C-GA------CGGTGTC---------------TATTTTGT-----AT---TAAGGTTA----TTT-GTTG-
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgT----T-----AT---CA---TCAATAGTTT-GGTGCAGAATTTTTGAGCAGTTGAGCTA-CGGAC---C-GTG-ATCATGTTCATCCATTC-GGGGTTGTC-GGAG-AAA-ATGTCCATAGGAAGTTTCACA------------AT----TCGAATAG--AT--TGCA-T----TAGTGTA-ACTAGCCGTTAA-AAGGTGACT-CCCTA-AGATccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttGTTTGGT-TTCCAGCTTTGTTCA--CGCGTT-TTGACGAACGT-AAGGGGTGGTTCGT-CAAGGAGATGAAG-TAAAGT--AGAG---ATGG-TGTGAGAA-ATGGCATGG-GGGGACAAG-TTTG-GCT--C-AGTatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|1 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaatt-C-CGTAG-CTAGAAG--CA-ACCAA-TT-GAGACCATAA--TAAAT--CC---TAAAA-ATACT--AAGA-------Acgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggccgtagctagaagcaaccaattgagaccataataaatcctaaaaatactaagaaggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|10 : gcattaagataagcatcattattattaaaaagaaatccacgccaggttttgtgcgaagcagttggtctctaatcaggaggtggtgttttagcgatgttctaaaaccatagaacgacggtgtctattttgtattaaggttatttgttgccctatcccaaatctaacctggatttttatcatcaatagtttggtgcagaatttttgagcagttgagctacggaccgtgatcatgttcatccattcggggttgtcggagaaaatgtccataggaagtttcacaattcgaatagattgcattagtgtaactagccgttaaaaggtgactccctaagatatttgcctttactatggctgtcaaaaagcgagtcgatatacgaagaccaattgtttggtttccagctttgttcacgcgttttgacgaacgtaaggggtggttcgtcaaggagatgaagtaaagtagagatggtgtgagaaatggcatggggggacaagtttggctcagtcgcccgaagtacccaccttagtaggggggatcaataccgctatctgatttttaggatcgcaaggcggggagaagttccgcggAA-----GATA--TATT--TAATA-GG--CTAAACT-TCAT-TA-CCA-GTA-TT--CATTAA--C-A-GC---AGTTAAA-TGG-C-A-TTA--AATTAT--AA-T-A-TT-TTTCCAG---TGT--A-CTCT-----------AACG-TACT-CTAA-A--GTAT--TCTG---T-TTAggtaacaacagcgaaatgattttgctcaagtgatcattatttaatgagcaaacattctaatgccgaacagtaacgggattcgatgtcgatctagggcgggagtcagtgacgggtggcagtgccgtcacatagatatagatatttgttccagccgtactcgtagactgagttct
gi|11 : atttctcaaacagaaaaaaaattagcttgggttgctaAGAC-AAT--AA-T-G-TTA-TT-T--AAG-----TATA--TATA--AAATA-GA--T-AAA---ATAA-TA-CAT-TGA-TTG-TATT---------T---AGCTAAA-T-----A-T----AAATAT--GA--TA-TTATTTCCAG---TGT--ATCTCTAAAGTACCTCTAACT-AACT-CTAATA--TTAC--TCTG---T-TTAGT-T-AGGACCaaagca
gi|12 : G---GAAAA-A-TGTAA-CTTGAAA--AG-ATAAA-TT-TA------AA--TAATTCC-----T-AAA-ATAAT--GAAA-------ACAAAC-AA---AG-T-A-T-A-TT-T--CAA-----C-T-----------ATA-GG--TTAAGCT-GAAG-CA-
gi|12 : AT--GA-ATG-TT-TGTCCCG---CGT--A-CTCTAAAGT-ACTagcatgaatgtttgtcccgcgtactctaaagtact
gi|13 : ggaaaaatgtaacttgaaaagataaatttaaataattcctaaaataatgaaaacaaacaaagtatatttcaactataggttaagctgaagcaagcCTACTAAA-CAG-AGTAC----------TTCAGAGT-ACTTT-AG-GT-ACACTGTCAATAAA-TAAC----AATTT--AG-T-AAT-G-AACAGGAATTATTTTTTATTATATGC-TAAATAA
gi|14 : tc------C-ATCCC---------------G-T----TCCAG-AT---TA---TTA----TTT-GGTG-AGAATTT---AGCA--CA--CGC-C--AC---AAGTG-ATCAT-TTCATC-ATTC-GGGGCTGTC-GG-G-AAA-A-------------Cc
gi|15 : taaaggtttttgcCTACTAAA-CAG-AGTAC----------GTTAGAGT-A-----AG-------CTG-GAAA-AA-TA--TAT-AATTCAAAG-T-AAT-TTAACTA--ATTATTTATATATATA
gi|16 : tc-A-GC---AGTTAAA-TGG-C-A-TTA--AAATAT--AA-T-A-TG-TTTCCAG---CGT--A-CTTTAA-----------TG-TACT-CTAA-A--GTAC--TCTG---T-TTAGTAT-AGGACCaa
gi|17 : A--C-ATGC---AGTTAAA-TAG-C-A-TTG--AAATAT--AA-T-A-TT-TTTCCAG---CGT--A-CTCT-----------AAC---------------GTAC--TCTG---T-TTAG--T-AGGACC
gi|18 : gtTA--AAA-AT--AA-T-A-TT-TTTCCAG---CGT--A--TCTAAA-T-TCTCTAACGTTAC--CTAA-A--GTAC--TCTG---T-TT-G--T-A-GACC
gi|19 : TA-TT-TTTCCAG---CGT--A-CTCT-----------AACG-TACT-CTAA-A--GTAC--TCTG-----TTAG--T-AGG
gi|2 : CTACTAAA-CAG-AGTAC----------TTTAGAGT-ACGTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTT-ATTT-TATGCTTAAATAAA-C-A-TTAT-TATAAA-ATAATTT---TGCAAGAGTTGTCTCAA-TTATTTTG-TT-TTAGCGATG-TTCTAACCATAAAACG-A-C--ATT------CT--ATTAATTAATTCTAT-----TAATT-A---------------A--AGGTTTTC-GC------C-ATCCTAATCACG--------GAT----T-----AT---CA---TTA----TTT-GGTG-AGAA-TT---AGCA--TA--CTA-CA-AC---CAGTG-ATCAT-TTCATC-ATTCAGGGGTTGTC-GG-G-AAA-A-------------ATTCACA------------ATCGAAT---------ATAATGCAGT----TAGT-TA-ACTAGC--TT-A-AA--T-ACT-CCCT--AAATTGCT---TA-
gi|2 : tcTTTGTT-T-CCAGCTT-GTTCA--CGC--T-TTGAATAA--T-AA----T-GTTCGT-CAATAA----A-G-TAA--T--A-AT---ATGGGT-T-ATAA-AT-GCATGA--------AA-TTGG-CT------ATTTCATTACA----C--TG--AATACG-CTA--T---------TATT-TTTATG--------------------------------A-TCG--GGG---T-C-A--AGC-------------------TAGAAG--CA-ATAAA-TT-GA------AA--TAATTCC-----T-AAA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--CTAAACT-ACAG-TA-CGA-TCA-TT--CATTAA--C-A-GC---AGTTAGG-TGG-C-A-TTA--AAATAT--AA--TA-TT-TTTCCAG---CGT--A-CTCTAAAGT-TCTCTAAC---------------ATAC--TCTG---T-TTAG--T-AGGACCcatgcctgttcaaaacagcataaaacaattgcaattataataaatatatttgtttccagcttgttcacgctttgaataataatgttcgtcaataaagtaataatatgggttataaatgcatgaaattggctatttcattacactgaatacgctattatttttatgatcggggtcaagctagaagcaataaattgaaataattcctaaaatactgaaaacaaacaaaatatatttctaatatatatttaataggctaaactacagtacgatcattcattaacagcagttaggtggcattaaaatataatatttttccagcgtactctaaagttctctaacatactctgtttagtaggacc
gi|20 : tcctactaaacagagtactttagagtacgttagagtacactggaataataaccataattctaagtaatgcaacagattattttattttatgcttaaataaacattattataaaataattttgcaagagttgtctcaattattttgttttagcgatgttctaaccataaaacgacattctattaattaattctattaattaaaggttttcgccatcctaatcacggattatcattatttggtgagaattagcatactacaaccagtgatcatttcatcattcaggggttgtcgggaaaaattcacaatcgaatataatgcagttagttaactagcttaaatactccctaaattgcttacatgcctgttcaaaacagcataaaacaattgcaattataataaatataT-TTTCCAGCG-TACT-CTAA-C--GTAC--TCTA---T-TTAG--T-AGGACC
gi|21 : atAACG-TACT-CTAA-A--GTAC--TCTG---C-TTAG--T-AGGACC
gi|3 : TACTAAAACAG-AGTAC----------GTTAGAGT-ACTT--AGATT-ACAT---GAAT-AA-TAAC-AT-AATTCTAAGCT-AATTGCAA-AGC-ATTATTT--ATTTATATGCTTAAAAAAAAC-AGTCATGTATGAA-TCAATTTATTCGCAAT-G--GCCT--AGTTG-CTC--TT-TT-----TG-TTT-------AG--CG-A-G--TTT------CT--A------------AC-----CA--TTA---------------A--AA-----C-G-------C-ATCCC---------------GAT----T-----AT---TA---TTA----TT-------GGAATTT---AG----TA--CTAGC--AG---AAAC---------TCATC---TC-CGAGTTGTC-GG-C-AAA-C-------------CTT-AAA------------AT----T---------AT--TGCAGTA---TAGTCTA-ACT-GC--TTAAGAA--G-ACT-CCGTA-AA-TTGCT---TA-AGTTTGGT-T-CCAGCTTTGTTCA--CGC--T-TTGACGAA--T-AA----T-GTTCTT-CAATAA----AAGCTAAA-TTCA-AT---ATGG-T-T-ATAA-A----ATC--G----TAA---TGGATTT--C-GATCTC---ACAA-ACC--T-TTATTACG-CTT--T---------TATTATTTATGT--TAAAT---TGATATG----AATGAT-TTGATTCG--GCG---T-C-AACAGCGC--GT-AA-C-CGTAG-CTAGAAG--CA-ATAAC-TT-AG------AA--TAATTCCCT---T-AAACATACTA-GAAA-------ACAAACAAA---AA-T-ACT-A-TT-TCATAA-----TATAAGTA-T--TAATA-GG--TTAAACT-ACAGTTA-CGA-CCAGTT--CATTAA--C-A-GCTAGAGTTAAA-TGG-CAA-TTA--AAATATGCGATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGT-TCTCGAACG-TACTCCTAA-AC-GT-C--TC-G---TCTTAG----AGGACC
gi|4 : -TT-----TGATTTT-----TAG--CG-ACT--GTT------CT--A------------AC-----CAT-T-A---------------AGGAA-----CAGG------C-ATGTCTATTTAATTGGAACGGAT----TTTGCCATCTCTA---TTA----TTTGGGTG-AGAATTT---AGCA--T---CTA-C--A-----------------TCATC-------GGGTTGTC-GG-A-AAATA-------------TCTCAAA------------AT----TCACGATCAAAT--T--AATGACGTAGT-TATACTAGC---TAA-AA--T-ACT-CGGTATAAATTGAT---TA-Acggacctggtaactttt
gi|4 : caatagtttgtacaattaTGTTCTTCCAGCTTT--TCAGCCGC--TGTTGACGA---T-AAC---T-GTTCTTTCATTTA----AAG-TAAA-T--A-ATTTTATGGAT-G-ATAAGAT-G--TTATG----TAAA-TTG----T--T-AGTTTA--CACAGCACCGTTGCCACTACGACATAGT---------TAAT-TTTATGCAGTAAATGTGT-ATGTGGCAGAAT-ATGTTGAATCG--AGGAGATAC-A--CCCG---GTAAA-CACGTAGGCTAGAAG--AGGATAAAGCT-GA------GAAGTAATTCGCCGTGT-GAA-ACTGT--GAAATCACAGTACATAC-AATTTAA---A-T-C-TC-C--TAAACAGGTATA--TATTGGTAATA-GAGATTAGTCT--C---TATCAG-TTG-TC--GATTAAAGC-A-GC---AGGTAA--TGG-T-A-TTAGAAAATTT--GA-ACAATT-TTTCCAGAGCCGTTTC-CTCTAAAGT-TCTCTAACG-TGCT-CTAA-ACCGTGCTATCTGTTAT-TTAG--TCAGGAtgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagtgttcttccagcttttcagccgctgttgacgataactgttctttcatttaaagtaaataattttatggatgataagatgttatgtaaattgttagtttacacagcaccgttgccactacgacatagttaattttatgcagtaaatgtgtatgtggcagaatatgttgaatcgaggagatacacccggtaaacacgtaggctagaagaggataaagctgagaagtaattcgccgtgtgaaactgtgaaatcacagtacatacaatttaaatctcctaaacaggtatatattggtaatagagattagtctctatcagttgtcgattaaagcagcaggtaatggtattagaaaatttgaacaatttttccagagccgtttcctctaaagttctctaacgtgctctaaaccgtgctatctgttatttagtcaggagg
gi|5 : caatagtttgtacaattatttgatttttagcgactgttctaaccattaaggaacaggcatgtctatttaattggaacggattttgccatctctattatttgggtgagaatttagcatctacatcatcgggttgtcggaaaatatctcaaaattcacgatcaaattaatgacgtagttatactagctaaaatactcggtataaattgattaatgcgttaagtacacagtcataaaagaattgacacattattgaataaatatagCTACTAAA-CAG-AGTAC----------GTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCAACAG--ATTATTTTTATTTATATGCTTAAAAAAA-C-A-TCAT-TATGAA-ATAATTT---TGCAATAG--GCCT--AGTTGTCTC--TT-TT-----TG-TTTT-----TAG--CG-A-T--GTT------CT--A------------AC-----CA--T-A---------------A--AA-----C-GG------C-ATCCC---------------GAT----T-----AT---TA---TTA----TTT-GGTG-AGAATTT---AGCA--TA--CTA-C---C---A---G-A--A----CATC-ATTC-GCGGTTGTC-GG-C-AAA-A-------------CTTCAAA------------AT----T---------AT--TGCAGT----TAGT-TA-ACTAGC--TTAA-AA--G-ACT-CCGTA-AAATTGCT---TA-AGTTTGCT-TTCCAGCTTTGTTCAC-CGC--T-TTGACGAA--TGAA----T-GTTCTT-CAATAA----AAG-TAAA-TTCA-AT---ATGG-T-T-ATAA-A---CATCA-G----T-AA-TTGA-TTT--CGAGTCTC--TACAA-ACC--TGTTACTACG-CTT--T---------TATTGTTTATGT--TAAATG--T-AT-TG----AATGAT-TTGATTCG--ACG---T-CAA--AGCACGCGT-AA-C-CGTAG-CTAGAAG--CA-ATAAC-TTAGA------AA--TAATTTCCC---T-AAA-ATACTCAGAAA-------ACAAAC-AA---AA-TCA-T-A-TT-C--TAA-----TATA--AATT----ATA-GG--TTAAACT-ACAG-TA-CGA-CCA-TT--CATTAA--C-A-GCTG-AGTTAAA-TGG-C-A-TTA--AAATAT--GATTTA-TT-TTTCCAG---CGT--A-CTCTAAAGT-TCTCTAACG-TACT-CTAA-A--GTAC--TCTG---T-TTAG--T-AGGACCgg
gi|6 : T-TATAAA--TA-TTT---TGCAATAG-----T--A-T-GTCCCA-TTATT-----TG-TTT-------AG--CGGA-TTCGTT------CT--A------------ACTAAAACA--C-ATTCTTATATACTATTA--AA-----G-GGTTTTGCC-ATCAC---------------GAA----T-----AT----A---T-A----TTT-G-TA-AGAATTT---AG-A--TA---TA-C--AC---CAGTGGATCAT-T-CATC-ATCC-GGGGTTGTCGGG-G-AAA-A-------------CTTCAAAAATTCACAATCGAT----T---------AT--TGCATT----CAGT-TA-AC-AGC---TAA-AA--T-ACT-CTGTA-AAATTGCT---g
gi|6 : -C--AC---AATCG-ATTAT-TGCAT----TC-AG--TTAAC-AG-CTAAA-ATACT---------CTGTAAA------------AT----TGCTAC----AT--TGCTGT----CAA---A-AACAGC--ATGA-AA--C-AAT-TGGCA-ATATAAATAAATATAGTATGTT-TTCCA-CCTTGTTCA--CGC--T-T-GACGAA--T-A-----T-GTTCGT-CAATAA----AG---AAA-T--A-AT---ATGG-G---ACAA-AT-GCAT---G----TAAAATTGG-CT-----AGTTTCA-TACA---CC--TGATAATAC--------------------------TGC--TATAT---T------------T-AT---GA-TCG--GGA---T-C-A--AGCG---GTAAA-C-CGTAG-CTAGAAGGCCA-ATAAA-TT-GA------AT--TAATTCC-------AAA-ATACT--GAAA-------AC-AAC-AA---AATT-A-T-ATTT-C--TAA-----TAT---TATT--TGATA-GG--CAATACT-ACAG-TA-CGA-TCA-TT--CATTAA--CAA-GC---AGTTAGA-TGG-C-ATTTA--AAACAacattgctgtcaaaaacagcatgaaacaattggcaatataaataaatatagtatgttttccaccttgttcacgcttgacgaatatgttcgtcaataaagaaataatatgggacaaatgcatgtaaaattggctagtttcatacacctgataatactgctatatttatgatcgggatcaagcggtaaaccgtagctagaaggccaataaattgaattaattccaaaatactgaaaacaacaaaattatatttctaatattatttgataggcaatactacagtacgatcattcattaacaagcagttagatggcatttaaaacaga
gi|7 : ttataaatattttgcaatagtatgtcccattatttgtttagcggattcgttctaactaaaacacattcttatatactattaaagggttttgccatcacgaatatatatttgtaagaatttagatatacaccagtggatcattcatcatccggggttgtcggggaaaacttcaaaaattAAA-CAGTAGTAC-----------TTAGAGTTACTTTTAGAGTTACACTG-GAAT-AAATAACGATGAATTCTAAG-TTAAT-ACAACAG--ATTA--TCTAT---TAT-------------------T-TATA----TACTTT-----AAATAA--ACAT--A-TT-----------------TG-TTTT-----T-G--CC-A-T----T------C-------------------------------------------------------C-GG--------ATCCCC--------------GAT----T-----AT---TA---T-A----TTT-GGTG-AGAATTT---AGCA--TA--CTA-C--ACCAGAAGTG-ATCA--TTCATC-ATTC-GGGGTTGTC-GG-A-AAA-A-------------CTT-A----------------------------------TGCAGT-------T-TA-A--AAC--TTAA-AA----AC--CCGTA-AAATTGCT---ga
gi|7 : aAAA-C--A-ATTG-ACAA-T-T-ATAA-AT---AAAA-A----TA---TTAG-TTT-----GTTTC----CAG--CT--TGTTTCAAGG-CTT--TGGCAAATAATATC-TTCA--A--TAAA--------GTA----AAT-AA-GT-A-TCGCAGGA---T-C-A--AGCG---GTAAA-T-CGTAG-TT-GAAG--CA-ATAAA-TT-GA------AA--TAATTTTCC---T--AA-ATACT--GAAA-------ACAAAC-AA---AA-T-A-T-ATTT-C--TAA-----TATA--TATT--TAATGTAG--TTAAACTAACAT-TA-CGATTCA-TTTCCAATA-----A-AC---AGTTAAATTGGCC-A-TTA--AAAgtgaaaacagcacaaaacaattgacaattataaataaaaatattagtttgtttccagcttgtttcaaggctttggcaaataatatcttcaataaagtaaataagtatcgcaggatcaagcggtaaatcgtagttgaagcaataaattgaaataattttcctaaatactgaaaacaaacaaaatatatttctaatatatatttaatgtagttaaactaacattacgattcatttccaataaacagttaaattggccattaaaacta
gi|8 : aaaacagtagtacttagagttacttttagagttacactggaataaataacgatgaattctaagttaatacaacagattatctattatttatatactttaaataaacatatttgtttttgccattccggatccccgattattatatttggtgagaatttagcatactacaccagaagtgatcattcatcattcggggttgtcggaaaaacttatgcagtttaaaacttaaaaacccgtaaaattgctgtgaaaacagcacaCTACTAAA-CAG-AGTAC----------TTTAGAGT-ACTTT-A------------GAGT-AA-CA----------CTGGA-T-AAT---AAC-G--ATGATTCTAAGTAATAC-----AACAGA-TTA-TCTT-TATTTATATACTT-------AATAA--AC----A-TTAT---------------TG-TTTT-----TGG------------------------------------GC-----CA--T-C-------------------------C-GG--------ATCCC---------------GAT----T-----AT---TA---TTA----TTT-GGTG-AGAATTT---AGCA--TA--CTA-C--AC----AGTG-ATCAT-TTCA-C-ATTC-GGGTTAGTC-GG-A-AAA-A-------------C-------------------T----T---------AT--TGCAGT----TAA--------AAC--TTAA-AA--T-ACTCCCGTA-AAATTGCT---cta
gi|8 : gtc-CAATTG----AAA-TTAA-T--A-A-------------ATAA-AT---ATGA-G----T----TTTG-TTTTCC-AGCTTG--TTCAG-GTT--TGGCAATAA-------T---------TATT-CTT------CAAAT---A-A-GTA----AAT-AA-T-AA-TCG--GA----T-C-A--AGCG---GTAAAAT-CGTAG-CT-GAAG--CA-ATAAA-TT-GA------AA--TAATTCCTA---T-A----TACT--GAAA-------ACAAAC-AA---AA-T-A-T-A-TTTC--TAA-----TATA--TATT--TAATA-GG--TTAAACT-ACAT-TA-CGA-TCATTT--CATTAA----A-GC----GTTAAA--GG-C-A-TTA--AAATAT--gtgaaaacagcacaaacaattgaaattaataaataaatatgagttttgttttccagcttgttcaggtttggcaataattattcttcaaataagtaaataataatcggatcaagcggtaaaatcgtagctgaagcaataaattgaaataattcctatatactgaaaacaaacaaaatatatttctaatatatatttaataggttaaactacattacgatcatttcattaaagcgttaaaggcattaaaatatac
gi|9 : gtcctactaaacagagtactttagagtactttagagtaacactggataataacgatgattctaagtaatacaacagattatctttatttatatacttaataaacattattgtttttgggccatccggatcccgattattattatttggtgagaatttagcatactacacagtgatcatttcacattcgggttagtcggaaaaacttattgcagttaaaacttaaaatactcccgtaaaattgctgtgaaaacagcacaaaCTACTAAA-CAG-AGTACTTTAGAGTATGTTAGAGT-ACTTT-AGAGT-ACACTG-GAAT-AA-TAACCAT-AATTCTAAG-T-AAT-GCATCAG--ATTATTTTTATTCATATTCTTAAATAAA-C-T-TAAT-TATAAA-ATAATTT---TGCAATAA-----------TGTCACAATTATT-----TG-ATTT-----TAG--CG-A-T--GTTCTAGGCCT--A------------AC-----CA--T-A---------------A--AA-------GG------C-ATTCT----------------AT----T-----Aac