lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222222222222222222222222222222222222222222222222222222222222222 1 222 3333 222222 2222222222 1 2 11 333333333 111 222222 33333333333 1
lowQualScore : 0 8 0 0 222222222222222222222222222222222222222222222222222222222222222222 4 6 999 4 3333 8 000000 8 1111111111 3 0 0 6 4 3 2 8 6 5 5 6 33 66 777777777 777 333333 0 3 88888888888 6 1 4
lowQualScore : . . . . .................................................................. . . ... . .... . ...... . .......... . . . . . . . . . . . . .. .. ......... ... ...... . . ........... . . .
lowQualScore : 0 0 8 8 000000000000000000000000000000000000000000000000000000000000000000 2 0 222 6 0000 0 888888 0 2222222222 2 8 4 4 8 2 5 0 7 7 7 4 88 88 222222222 555 000000 8 2 00000000000 0 4 0
consensus : NNNNNNNNNNNNNNTTGTTTTACGTCCT-CTC-GAGAATATTT---T-ATATT------TCACCCAT----ATGC-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCAC-T--ATGGCC-TTTG----AGC-AGG---GAAG-G-ATCTTTATTCGTGCCACACTTGCTGTGACACGGGGCC-TCGG-T-TT-TGCGGTCT--CATCCGAATGACC-ACNCC---ATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGGTACTGAGGACCTNTCA
Reference ( gi|1 ) : TTGATAGATATAAGTTGTTTTACGTCCT-CTC-GAGAATATTT---TGATATT------TCACCCAT----ATGC-------GACG------------GT-----GAAGGGCTGCAAATTTTAAGCCTTGTGCTCGGCGC-C--ATGGCC-TTTG----AGC-AGG---GAAG-G-ATCGTTATTCGTGCCACACCTGCTGTGACACGGGGCC-TCGG-T-TT-TGCGGTCT--CATCCGAAGGACC-ACTCC---ATT------TAGTCGCCTC-----------TTACGACAAGC-AAGGGTGCTGAGGACCTATCATCTACAATATTGTAACCCGGATTCTCCACGGAGCTAGGGTAAGTTACGTCTCTTGCAACGGCAGAGAATTCTAACAAAAGTCAAAAAGTAATACAAAAATGTTATTTCATTTTTTGAATAATAAATAGGTATGGATGAAT
gi|4 : TTGTTTTACGTCCCGCTT-GAGAAT---T---T----TT------TCACTCAT----ATACATATAGAGACGTCGCCATTGCCAGT-----GAAGGGCTGTAAAATTTAGGCCT-GTGCTCAGCGC-TT-ATGCCC-TTGG----AGC-AGGATCGAAGAG-ATCTTTAT-CGCGCCATACCTGCTGTGACAGGGGAC
gi|2 : attgatttaaaattgtgtaTTACGTCCT-CTC-G-GAAT------------TT------TCACTCATGTAAATGC-------CACC------------ATCACTGAAAGAGCAGCAATATTGAGGCCTT-TACTCG-CACAT--ATGGCC-TT-A----AGT-AAG-----AG-GTAT--TTAT-CGT-TCATAAATGTTCTACCATGAAGACATCGG-C-TT-TGCGATTTGCCATTCAAA----C-ACACCGCGATT------CAGCC-CTTC-----------TTACGACCAGC-AA-GGTACTTATGACTT
gi|14 : cttgagtactagtctattgCCT-CTC-GAGA-----------ATATT------TCACCCAT----ATG--------GACA------------AT-----GAAGGGCTGCAAAtatgacctgaatcttc
gi|13 : cCCT-CTCTGAGAATATTT-----------------CACCCAT----ATG--------GACA------------AT-----GAAGGGCTGCAAAa
gi|3 : cC-GAGAATATTTCACTCATATGGAGACGTCACC-AT-----TGC---------CG------------GT-----GAAGGGCTGCAAAATTTAGGCCT-ATGCTCGGCAC-TCGGGGGCC-ATTG----AGC-AGG---GAAG-G-ATCATT-TTCGTGCCACACTTGCTGTCACACGGGGCC-TCGG-TATT-TTCTGT-T--CAT-CGAATGACC-GCCCC---ATT------CAGTCGGATC-----------TTACGGAACGC-AGGGATGCTGGGGACCTTTCAa
gi|17 : cttg------------GT-----GAGGGACTGCAAACTTTAGGCC-TATGCTCGGCAC-accg
gi|9 : TGTTCGGCTG-T--ATGGCCATTTG----AGCCACG---GAAG---ATCTTTATTCGTGTCA-ACTACCTGTG-CACTGAGCC-TCAG-T-TT-TTCGGTC
gi|7 : a--ATGCCC-TTTTTAATAGC-AGG---AAGA-T-ATCTTTAT-CGAGCAACACTTACTGTGACACCGGGCA-TTTG-T-TTCTGCGG
gi|16 : cctggcttaaggcttACTTACTGTGACACCGGGCA-TCGGTT-TT-TGCGGacattttata
gi|8 : t-T-TT-TACGGTTT--CACCTGAAAGACCCAC-CC---ATTTACTAATAGTCGCCTCTTATGTTATTGTTATGACAAGTAAAGAATGCAGAGGac
gi|10 : -TT-TGCGGTCT--AGTCAGAATT-TT-ATTCC---ATT------T-GTCACCTC-----------GATCGGCGAGCAAAGGGTACTGAGGATCTATTA
gi|15 : ttgtacTT------TAGTAGCCTC-----------TTGCGACAAGT-AGGGTTACTGAGTACCTa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): GTTTGTTGCTTTATGTCCTATCTAAGACGTTTTCACTCATAAAGATCGCCAGCTGTGAGTGAAATTGAGCGAATTTTGATCCTTTCATAGCGCTAATGGCTGTAACAGTAAGAGTTGTTTATCGTTTTTGAGGTCT
Unaligned ( gi|6 ): TTCATGTCACGCTTAGATTTTTTTTCACTCATATCGGAGATGCTCACATTGCCGGTCGAAGGACTGGCTAACAGATTAGGCATTTGCCTTTTCAAGAACAGGAAGGTCTTTATC
Unaligned ( gi|11 ): TTGTTTAACATCCCACAGAAATTTTTCACTCATACAATTGAGATGTCACCTGAGTGAATGCCGGAGAAAAGCT
Unaligned ( gi|12 ): GATGGATTGATTGCATATTGTTTTACGTCCCTCTTGACAATTTTTCACTTACATG
Unaligned ( gi|18 ): GCCCTTGTTGAGAATATTTCACTCGTATGGATACG
Alignments
lowQualScore : 888888888888888888888 1111 4444444444444444444444444444444 2 1111 11 1111 1111 11 111 111 111111 33333333333 1
lowQualScore : 8 6 111111111111111111111 4444 6666666666666666666666666666666 0 4 1 0 4444 00 4444 6 2222 99 7 3 1 66 2 5 5 5 3 11 3 666 1 444 999999 1 11111111111 5 1 6 1
lowQualScore : . . ..................... .... ............................... . . . . .... .. .... . .... .. . . . .. . . . . . .. . ... . ... ...... . ........... . . . .
lowQualScore : 0 7 333333333333333333333 2222 8888888888888888888888888888888 4 2 0 3 1111 22 2222 7 7777 22 3 7 4 44 5 7 0 0 7 00 2 444 0 000 222222 0 77777777777 5 7 7 0
consensus : NNNNNNNNNNNNNNTTGTTTTACGTCCT-CTC-GAGAATATTTT--------TT------TCACCCAT----ATGC-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAANGACCACCCC---ATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
Reference ( family-609 ) : NNNNNNNNNNNNNNTTGTTTTACGTCCT-CTC-GAGAATATTTT-A----TATT------TCACCCAT----ATGC-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCAC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCCTCGG-T-TT-TGCGGTCT--CATCCGAATGACCACNCC---ATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TACTGAGGACCTNTCA
gi|1 : TTGTTTTACGTCCT-CTC-GAGAATATTTTGA----TATT------TCACCCAT----ATGC-------GACG------------GT-----GAAGGGCTGCAAATTTTAAGCCTTGTGCTCGGCGC-C--ATGGCC-TTTG----AGC-AGG---GAAG-GATCGTTATTCGTGCCACACCTGCTGTGACACG-GGGCCTCGG-T-TT-TGCGGTCT--CATCCGAAGGACCACTCC---ATT------TAGTCGCCTC-----------TTACGACAAGC-AAGGG-TGCTGAGGACCTATCA
gi|10 : ttgatagatataag-TT-TGCGGTCT--AGTCAGAATT-TTATTCC---ATT------T-GTCACCTC-----------GATCGGCGAGCAAAGGG-TACTGAGGATCTATTAtctacaatattgtaacccggattctccacggagctagggtaagttacgtctcttgcaacggcagagaattctaacaaaagtcaaaaagtaatacaaaaatgttatttcattttttgaataataaataggtatggatgaat
gi|13 : ttgtacCCT-CTCTGAGAATATTT------------------CACCCAT----ATG--------GACA------------AT-----GAAGGGCTGCAAAAa
gi|14 : cCCT-CTC-GAGAATATTT------------------CACCCAT----ATG--------GACA------------AT-----GAAGGGCTGCAAAA
gi|15 : cTT------TAGTAGCCTC-----------TTGCGACAAGT--AGGGTTACTGAGTACCTTCC
gi|16 : ACTTACTGTGACACC-GGGCATCGGTT-TT-TGCGG
gi|17 : t------------GT-----GAGGGACTGCAAACTTTAGGCC-TATGCTCGGCAC-ac
gi|2 : TTACGTCCT-CTC-G-GAAT-------------TT------TCACTCATGTAAATGC-------CACC------------ATCACTGAAAGAGCAGCAATATTGAGGCCTT-TACTC-GCACAT--ATGGCC--TTA----AGT-AAG-----AG-G-TATTTA-TCGT-TCATAAATGTTCTACCATGAAGACATCGG-C-TT-TGCGATTTGCCATTCAAA----CACACCGCGATT------CAGCC-CTTC-----------TTACGACCAGCAA--GG-TACTTATGACTT
gi|3 : cttgagtactagtctattgC-GAGAATATTTC-ACTCATATGGAGACGTCACC-AT-----TGC---------CG------------GT-----GAAGGGCTGCAAAATTTAGGCC-TATGCTCGGCAC-TCGGGGGCC-ATTG----AGC-AGG---GAAG-GATCATT-TTCGTGCCACACTTGCTGTCACACG-GGGCCTCGG-TATT-TTCTGT-T--CAT-CGAATGACCGCCCC---ATT------CAGTCGGATC-----------TTACGGAACGC-AGGGA-TGCTGGGGACCTTTCAtatgacctgaatcttc
gi|4 : cttgTTGTTTTACGTCCCGCTT-GAGAAT---TT--------TT------TCACTCAT----ATACATATAGAGACGTCGCCATTGCCAGT-----GAAGGGCTGTAAAATTTAGGCC-TGTGCTCAGCGCTT--ATGCCC-TTGG----AGC-AGGATCGAAGAGATCTTTA-TCGCGCCATACCTGCTGTGACAGG-GGACaccg
gi|7 : attgatttaaaattgtgta-T--ATGCCC-TTTTTAATAGC-AGG---AAGA-TATCTTTAT-CGAGCAACACTTACTGTGACACC-GGGCATTTG-T-TTCTGCGG
gi|8 : cctggcttaaggct-T-TT-TACGGTTT--CACCTGAAAGACCCACCC---ATTTACTAATAGTCGCCTCTTATGTTATTGTTATGACAAGTAAAGAA-TGCAGAGGacattttata
gi|9 : ATGTTCGGCTG-T--ATGGCCATTTG----AGCCACG---GAAG--ATCTTTATTCGTGTCA-ACTACCTGTG-CACT-GAGCCTCAG-T-TT-TTCGGTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTGTTGCTTTATGTCCTATCTAAGACGTTTTCACTCATAAAGATCGCCAGCTGTGAGTGAAATTGAGCGAATTTTGATCCTTTCATAGCGCTAATGGCTGTAACAGTAAGAGTTGTTTATCGTTTTTGAGGTCT
Unaligned ( gi|6 ): TTCATGTCACGCTTAGATTTTTTTTCACTCATATCGGAGATGCTCACATTGCCGGTCGAAGGACTGGCTAACAGATTAGGCATTTGCCTTTTCAAGAACAGGAAGGTCTTTATC
Unaligned ( gi|11 ): TTGTTTAACATCCCACAGAAATTTTTCACTCATACAATTGAGATGTCACCTGAGTGAATGCCGGAGAAAAGCT
Unaligned ( gi|12 ): GATGGATTGATTGCATATTGTTTTACGTCCCTCTTGACAATTTTTCACTTACATG
Unaligned ( gi|18 ): GCCCTTGTTGAGAATATTTCACTCGTATGGATACG
Alignments
lowQualScore : 333333333333 1111 77777777777777777777777777777777777777777777 2 1111 11 1111 1111 11 1 111111 33333333333 1
lowQualScore : 6 6 5 666666666666 2222 22222222222222222222222222222222222222222222 0 4 1 2 4444 00 4444 6 2222 99 7 3 1 66 1 5 5 5 3 11 3 1 0 8 999999 1 11111111111 5 1 6 1
lowQualScore : . . . ............ .... ............................................ . . . . .... .. .... . .... .. . . . .. . . . . . .. . . . . ...... . ........... . . . .
lowQualScore : 7 7 7 999999999999 1111 55555555555555555555555555555555555555555555 4 2 0 2 1111 22 2222 7 7777 22 3 7 4 44 0 7 0 0 7 00 2 0 6 0 222222 0 77777777777 5 7 7 0
consensus : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATATTTT----TTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
Reference ( family-609 ) : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATATTTT----TTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAANGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
gi|1 : TTGTTTTACGT-CCT-CTC-GAGAATATTTTGATATTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAATTTTAAGCCTTGTGCTCGGCGC-C--ATGGCC-TTTG----AGC-AGG---GAAG-GATCGTTATTCGTGCCACACCTGCTGTGACACG-GGGCCTCGG-T-TT-TGCGGTCT--CATCCGAAGGACCACT-CCATT------TAGTCGCCTC-----------TTACGACAAGC-AAGGG-TGCTGAGGACCTATCA
gi|10 : ttgatagatataag-TT-TGCGGTCT--AGTCAGAATT-TTATT-CCATT------T-GTCACCTC-----------GATCGGCGAGCAAAGGG-TACTGAGGATCTATTAtctacaatattgtaacccggattctccacggagctagggtaagttacgtctcttgcaacggcagagaattctaacaaaagtcaaaaagtaatacaaaaatgttatttcattttttgaataataaataggtatggatgaat
gi|12 : ttgtacTTGTTTTACGTCCCT-CTT-GACAA----TT----TTTCACTTAC----ATG-------------a
gi|13 : gatggattgattgcata-CCT-CTCTGAGAATATTT--------CACCCAT----ATG---------------------GACA------------AT-----GAAGGGCTGCAAAA
gi|14 : c-CCT-CTC-GAGAATATTT--------CACCCAT----ATG---------------------GACA------------AT-----GAAGGGCTGCAAAA
gi|15 : cTT------TAGTAGCCTC-----------TTGCGACAAGT--AGGGTTACTGAGTACCTTCC
gi|16 : ACTTACTGTGACACC-GGGCATCGGTT-TT-TGCGG
gi|17 : t------------GT-----GAGGGACTGCAAACTTTAGGCC-TATGCTCGGCAC-ac
gi|2 : TTACGT-CCT-CTC-G-GAAT---------TTTCACTCATGTAAATG-------------C-------CACC------------ATCACTGAAAGAGCAGCAATATTGAGGCCTT-TACTC-GCACAT--ATGGCC--TTA----AGT-AAG-----AG-G-TATTTA-TCGT-TCATAAATGTTCTACCATGAAGACATCGG-C-TT-TGCGATTTGCCATTCAAACA--CACCGCGATT------CAGCC-CTTC-----------TTACGACCAGCAA--GG-TACTTATGACTT
gi|3 : cttgagtactagtctattgC-GAGAATATTT--------CACTCAT----ATGGAGACGTCACCATT-------GCCG------------GT-----GAAGGGCTGCAAAATTTAGGCC-TATGCTCGGCAC-TCGGGGGCC-ATTG----AGC-AGG---GAAG-GATCATT-TTCGTGCCACACTTGCTGTCACACG-GGGCCTCGG-TATT-TTCTGT-T--CAT-CGAATGACCGCC-CCATT------CAGTCGGATC-----------TTACGGAACGC-AGGGA-TGCTGGGGACCTTTCAtatgacctgaatcttc
gi|4 : cttgTTGTTTTACGT-CCCGCTT-GAGAAT---TT----TTTCACTCAT----ATA-------------CATATAGAGACGTCGCCATTGCCAGT-----GAAGGGCTGTAAAATTTAGGCC-TGTGCTCAGCGCTT--ATGCCC-TTGG----AGC-AGGATCGAAGAGATCTTTA-TCGCGCCATACCTGCTGTGACAGG-GGACaccg
gi|7 : attgatttaaaattgtgta-T--ATGCCC-TTTTTAATAGC-AGG---AAGA-TATCTTTAT-CGAGCAACACTTACTGTGACACC-GGGCATTTG-T-TTCTGCGG
gi|8 : cctggcttaaggct-T-TT-TACGGTTT--CACCTGAAAGACCCAC-CCATTTACTAATAGTCGCCTCTTATGTTATTGTTATGACAAGTAAAGAA-TGCAGAGGacattttata
gi|9 : ATGTTCGGCTG-T--ATGGCCATTTG----AGCCACG---GAAG--ATCTTTATTCGTGTCA-ACTACCTGTG-CACT-GAGCCTCAG-T-TT-TTCGGTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTGTTGCTTTATGTCCTATCTAAGACGTTTTCACTCATAAAGATCGCCAGCTGTGAGTGAAATTGAGCGAATTTTGATCCTTTCATAGCGCTAATGGCTGTAACAGTAAGAGTTGTTTATCGTTTTTGAGGTCT
Unaligned ( gi|6 ): TTCATGTCACGCTTAGATTTTTTTTCACTCATATCGGAGATGCTCACATTGCCGGTCGAAGGACTGGCTAACAGATTAGGCATTTGCCTTTTCAAGAACAGGAAGGTCTTTATC
Unaligned ( gi|11 ): TTGTTTAACATCCCACAGAAATTTTTCACTCATACAATTGAGATGTCACCTGAGTGAATGCCGGAGAAAAGCT
Unaligned ( gi|18 ): GCCCTTGTTGAGAATATTTCACTCGTATGGATACG
Alignments
lowQualScore : 333333333333 1111 77777777777777777777777777777777777777777777 2 1111 11 1111 1111 11 111 111111 33333333333 1
lowQualScore : 6 6 5 666666666666 2222 22222222222222222222222222222222222222222222 0 4 1 2 4444 00 4444 6 2222 99 7 3 1 66 1 5 5 5 3 11 3 555 8 999999 1 11111111111 5 1 6 1
lowQualScore : . . . ............ .... ............................................ . . . . .... .. .... . .... .. . . . .. . . . . . .. . ... . ...... . ........... . . . .
lowQualScore : 7 7 7 999999999999 1111 55555555555555555555555555555555555555555555 4 2 0 2 1111 22 2222 7 7777 22 3 7 4 44 0 7 0 0 7 00 2 222 0 222222 0 77777777777 5 7 7 0
consensus : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATATTTT----TTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
Reference ( family-609 ) : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATATTTT----TTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
gi|1 : TTGTTTTACGT-CCT-CTC-GAGAATATTTTGATATTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAATTTTAAGCCTTGTGCTCGGCGC-C--ATGGCC-TTTG----AGC-AGG---GAAG-GATCGTTATTCGTGCCACACCTGCTGTGACACG-GGGCCTCGG-T-TT-TGCGGTCT--CATCCGAAGGACCACT-CCATT------TAGTCGCCTC-----------TTACGACAAGC-AAGGG-TGCTGAGGACCTATCA
gi|10 : ttgatagatataag-TT-TGCGGTCT--AGTCAGAATT-TTATT-CCATT------T-GTCACCTC-----------GATCGGCGAGCAAAGGG-TACTGAGGATCTATTAtctacaatattgtaacccggattctccacggagctagggtaagttacgtctcttgcaacggcagagaattctaacaaaagtcaaaaagtaatacaaaaatgttatttcattttttgaataataaataggtatggatgaat
gi|12 : ttgtacTTGTTTTACGTCCCT-CTT-GACAA----TT----TTTCACTTAC----ATG-------------a
gi|13 : gatggattgattgcata-CCT-CTCTGAGAATATTT--------CACCCAT----ATG---------------------GACA------------AT-----GAAGGGCTGCAAAA
gi|14 : c-CCT-CTC-GAGAATATTT--------CACCCAT----ATG---------------------GACA------------AT-----GAAGGGCTGCAAAA
gi|15 : cTT------TAGTAGCCTC-----------TTGCGACAAGT--AGGGTTACTGAGTACCTTCC
gi|16 : ACTTACTGTGACACC-GGGCATCGGTT-TT-TGCGG
gi|17 : t------------GT-----GAGGGACTGCAAACTTTAGGCC-TATGCTCGGCAC-ac
gi|2 : TTACGT-CCT-CTC-G-GAAT---------TTTCACTCATGTAAATG-------------C-------CACC------------ATCACTGAAAGAGCAGCAATATTGAGGCCTT-TACTC-GCACAT--ATGGCC--TTA----AGT-AAG-----AG-G-TATTTA-TCGT-TCATAAATGTTCTACCATGAAGACATCGG-C-TT-TGCGATTTGCCATTCAAACA--CACCGCGATT------CAGCC-CTTC-----------TTACGACCAGCAA--GG-TACTTATGACTT
gi|3 : cttgagtactagtctattgC-GAGAATATTT--------CACTCAT----ATGGAGACGTCACCATT-------GCCG------------GT-----GAAGGGCTGCAAAATTTAGGCC-TATGCTCGGCAC-TCGGGGGCC-ATTG----AGC-AGG---GAAG-GATCATT-TTCGTGCCACACTTGCTGTCACACG-GGGCCTCGG-TATT-TTCTGT-T--CAT-CGAATGACCGCC-CCATT------CAGTCGGATC-----------TTACGGAACGC-AGGGA-TGCTGGGGACCTTTCAtatgacctgaatcttc
gi|4 : cttgTTGTTTTACGT-CCCGCTT-GAGAAT---TT----TTTCACTCAT----ATA-------------CATATAGAGACGTCGCCATTGCCAGT-----GAAGGGCTGTAAAATTTAGGCC-TGTGCTCAGCGCTT--ATGCCC-TTGG----AGC-AGGATCGAAGAGATCTTTA-TCGCGCCATACCTGCTGTGACAGG-GGACaccg
gi|7 : attgatttaaaattgtgta-T--ATGCCC-TTTTTAATAGC-AGG---AAGA-TATCTTTAT-CGAGCAACACTTACTGTGACACC-GGGCATTTG-T-TTCTGCGG
gi|8 : cctggcttaaggct-T-TT-TACGGTTT--CACCTGAAAGACCCAC-CCATTTACTAATAGTCGCCTCTTATGTTATTGTTATGACAAGTAAAGAA-TGCAGAGGacattttata
gi|9 : ATGTTCGGCTG-T--ATGGCCATTTG----AGCCACG---GAAG--ATCTTTATTCGTGTCA-ACTACCTGTG-CACT-GAGCCTCAG-T-TT-TTCGGTC
blockSeqs : C G T TTTTT GTAA CATATAGAGACGTCGCCATTGCCAGT T A G A TCG AT TAAT C ATCG AG T T A GA A T A C C GC C TGA G TACTAA A TTATGTTATTG A A T A
blockSeqs : . . . TTTTT . GAGACGTCACCATTGCCGGT . A G A AT A . . G G T C C C A . . . T . T AGA . . G . A A . T
blockSeqs : . . . ATTT . CCACCATCACTG . G A A TT T . . A G T T A G C . . . T . C TT . . G . A G . T
blockSeqs : . . . ATTT . GACAAT . A G G T T . . G T . C A G A . . . C . . CA . . G . . A .
blockSeqs : . . . ATTT . GACAAT . . T T . . . . . . . A C C . . . . . . . . . .
blockSeqs : . TTT . . T . . .
blockSeqs : . .
blockSeqCons : NTTTT******* GACCGCCATCGCCGAT**************************** T***
originalCons : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATATTTT----TTTCACCCAT----ATG-------------C-------GACG------------GT-----GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
finalCons : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATNTTTT-------CACCCAT----ATGGACCGCCATCGCCGAT----------------------------GAAGGGCTGCAAAATTTAGGCCTTATGCTCGGCGCT---ATGGCC-TTTG----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTGTTGCTTTATGTCCTATCTAAGACGTTTTCACTCATAAAGATCGCCAGCTGTGAGTGAAATTGAGCGAATTTTGATCCTTTCATAGCGCTAATGGCTGTAACAGTAAGAGTTGTTTATCGTTTTTGAGGTCT
Unaligned ( gi|6 ): TTCATGTCACGCTTAGATTTTTTTTCACTCATATCGGAGATGCTCACATTGCCGGTCGAAGGACTGGCTAACAGATTAGGCATTTGCCTTTTCAAGAACAGGAAGGTCTTTATC
Unaligned ( gi|11 ): TTGTTTAACATCCCACAGAAATTTTTCACTCATACAATTGAGATGTCACCTGAGTGAATGCCGGAGAAAAGCT
Unaligned ( gi|18 ): GCCCTTGTTGAGAATATTTCACTCGTATGGATACG
Alignments
lowQualScore : 22222222 66666666666666666666666666666 11111 111 111111 11111111 111 111 11 111 111111 33333333333 1
lowQualScore : 5 5 5 9 11111111 0 4 11111111111111111111111111111 5 22222 3 555 3 555555 0 77 88888888 5 3 000 111 5 3 1 66 1 5 5 5 3 11 3 555 8 999999 1 11111111111 5 1 6 1
lowQualScore : . . . . ........ . . ............................. . ..... . ... . ...... . .. ........ . . ... ... . . . .. . . . . . .. . ... . ...... . ........... . . . .
lowQualScore : 7 7 0 7 88888888 7 4 99999999999999999999999999999 0 55555 4 888 0 666666 7 44 00000000 7 0 000 444 0 7 4 44 0 7 0 0 7 00 2 222 0 222222 0 77777777777 5 7 7 0
consensus : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATATTTT-------CACTCATAT-G--------GA----C--CGC---CATCGCCGGT-GAAGGGCTG-----CAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTT---G----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
Reference ( family-609 ) : NNNNNNNNNNNNNNTTGTTTTACGT-CCT-CTC-GAGAATNTTTT-------CACCCATAT-G--------GA----C--CGC---CATCGCCGAT-GAAGGGCTG-----CAAAATTTAGGCCTTATGCTCGGCGC-T--ATGGCC-TTT---G----AGC-AGG---GAAG-GATCTTTATTCGTGCCACACTTGCTGTGACACG-GGGCNTCGG-T-TT-TGCGGTCT--CATCCGAACGACCACC-CCATT------TAGTCGCCTC-----------TTACGACAAGCAAAGGG-TGCTGAGGACCTNTCA
gi|1 : TTGTTTTACGT-CCT-CTC-GAGAATATTTTGATATTTCACCCATAT-G--------------------------CGACGGT-GAAGGGCTG-----CAAATTTTAAGCCTTGTGCTCGGCGC-C--ATGGCC-TTT---G----AGC-AGG---GAAG-GATCGTTATTCGTGCCACACCTGCTGTGACACG-GGGCCTCGG-T-TT-TGCGGTCT--CATCCGAAGGACCACT-CCATT------TAGTCGCCTC-----------TTACGACAAGC-AAGGG-TGCTGAGGACCTATCA
gi|10 : ttgatagatataag-TT-TGCGGTCT--AGTCAGAATT-TTATT-CCATT------T-GTCACCTC-----------GATCGGCGAGCAAAGGG-TACTGAGGATCTATTAtctacaatattgtaacccggattctccacggagctagggtaagttacgtctcttgcaacggcagagaattctaacaaaagtcaaaaagtaatacaaaaatgttatttcattttttgaataataaataggtatggatgaat
gi|12 : ttgtacTTGTTTTACGTCCCT-CTT-GACAAT-TTTT-------CACTTACAT-G--------a
gi|13 : gatggattgattgcata-CCT-CTCTGAGAATATTT--------CACCCATAT-G--------GA----C---------------AAT-GAAGGGCTG-----CAAAA
gi|14 : c-CCT-CTC-GAGAATATTT--------CACCCATAT-G--------GA----C---------------AAT-GAAGGGCTG-----CAAAA
gi|15 : cTT------TAGTAGCCTC-----------TTGCGACAAGT--AGGGTTACTGAGTACCTTCC
gi|16 : ACTTACTGTGACACC-GGGCATCGGTT-TT-TGCGG
gi|17 : tT-GAGGGACTG-----CAAACTTTAGGCC-TATGCTCGGCAC-ac
gi|2 : gTTACGT-CCT-CTC-G-GAAT--TTT-------CACTCATGT-A--------AATG--C--CAC---CATCACTGA---AAGAGCAG-----CAATATTGAGGCCTT-TACTC-GCACAT--ATGGCC--TT---A----AGT-AAG-----AG-G-TATTTA-TCGT-TCATAAATGTTCTACCATGAAGACATCGG-C-TT-TGCGATTTGCCATTCAAACA--CACCGCGATT------CAGCC-CTTC-----------TTACGACCAGCAA--GG-TACTTATGACTT
gi|3 : cttgagtactagtctattgC-GAGAATATTT--------CACTCATAT-G--------GAGACGT--CAC---CATTGCCGGT-GAAGGGCTG-----CAAAATTTAGGCC-TATGCTCGGCAC-TCGGGGGCC-ATT---G----AGC-AGG---GAAG-GATCATT-TTCGTGCCACACTTGCTGTCACACG-GGGCCTCGG-TATT-TTCTGT-T--CAT-CGAATGACCGCC-CCATT------CAGTCGGATC-----------TTACGGAACGC-AGGGA-TGCTGGGGACCTTTCAtatgacctgaatcttc
gi|4 : cttgTTGTTTTACGT-CCCGCTT-GAGAATTTTTT-------CACTCATAT-ACATATAGAGA----CGTCGC---CATTGCCAGT-GAAGGGCTG-----TAAAATTTAGGCC-TGTGCTCAGCGCTT--ATGCCC-TTG---G----AGC-AGGATCGAAGAGATCTTTA-TCGCGCCATACCTGCTGTGACAGG-GGACaccg
gi|5 : attgatttaaaattgtgtaTTGCTTTATGT-CCT-ATC-TAAGACGTTTT-------CACTCATAA-A--------GA----T--CGC---CA
gi|6 : gtttgTTTTTT-------CACTCATATCG--------GAG---A--TGCTCACATTGCCGGTCGAAGGACTGGCTAACAGA--TTAGGCATT-TGC---------------CT-TTTCAAG----AAC-A-G---GAAG-G-TCTTTATgctgtgagtgaaattgagcgaattttgatcctttcatagcgctaatggctgtaacagtaagagttgtttatcgtttttgaggtct
gi|7 : ttcatgtcacgcttagatt-T--ATGCCC-TTT---TTAATAGC-AGG---AAGA-TATCTTTAT-CGAGCAACACTTACTGTGACACC-GGGCATTTG-T-TTCTGCGGc
gi|8 : cctggcttaaggct-T-TT-TACGGTTT--CACCTGAAAGACCCAC-CCATTTACTAATAGTCGCCTCTTATGTTATTGTTATGACAAGTAAAGAA-TGCAGAGGacattttata
gi|9 : ATGTTCGGCTG-T--ATGGCCATTT---G----AGCCACG---GAAG--ATCTTTATTCGTGTCA-ACTACCTGTG-CACT-GAGCCTCAG-T-TT-TTCGGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTGTTTAACATCCCACAGAAATTTTTCACTCATACAATTGAGATGTCACCTGAGTGAATGCCGGAGAAAAGCT
Unaligned ( gi|18 ): GCCCTTGTTGAGAATATTTCACTCGTATGGATACG