lowQualScore : 22222222222222 1111111111111111 1111111111111111111111 1111111111111111111111 11111111111 1111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 11 3 44 111 1 11 5555555555 4444 00000000000000 1 3333333333333333 222 4444 222 1 888888888888888888 11 22 4444444444444444444444 7777777777777777777777777777777777777777 1 3333 1 1 1 1 222 1111111111111111111111 1 55 1 222 222 4444 2222 00000000000 1111 111 2222222 1 11 1 222222222222 1111 1 1 111 22222222 1111111111111111111111111111 22222222 222222222222 111 22222222222 1 111 9999999999999999999999999999999999999999999999999999999999999999999 111 2222222 1111 111111
lowQualScore : 5 6 88 0 0 55 0 0 22 555 5 8 11 6 2 0 4444444444 6 2222 55555555555555 6 4 5 2222222222222222 2 4 111 4 2222 666 2 3 2 0 555555555555555555 77 77 4 2222222222222222222222 4 6 6 2 9999999999999999999999999999999999999999 5 2 1111 5 66 6 6 6 5 5 6 6 1 0 6 6 333 7 6 6 8888888888888888888888 6 8 2 2 0 2 6 5 6 55 5 000 111 0 6666 3 0000 6 6 6 6 4 44444444444 6 7777 8 8 8 000 8 6666666 88 6 0 2 0 77 0 6 5 2 000000000000 0000 0 5 5 0 555 6 99999999 8 1 66 4444444444444444444444444444 5 5 00000000 6 0 5 7 888888888888 5 5 000 5 5 55555555555 3 6 6 9 888 1111111111111111111111111111111111111111111111111111111111111111111 6 6 99 5 3 000 5 77 5 0000000 0 6 7777 666666 5 5 22 11 2 6
lowQualScore : . . .. . . .. . . .. ... . . .. . . . .......... . .... .............. . . . ................ . . ... . .... ... . . . . .................. .. .. . ...................... . . . . ........................................ . . .... . .. . . . . . . . . . . . ... . . . ...................... . . . . . . . . . .. . ... ... . .... . .... . . . . . ........... . .... . . . ... . ....... .. . . . . .. . . . . ............ .... . . . . ... . ........ . . .. ............................ . . ........ . . . . ............ . . ... . . ........... . . . . ... ................................................................... . . .. . . ... . .. . ....... . . .... ...... . . .. .. . .
lowQualScore : 0 5 00 8 2 22 8 8 44 000 0 0 00 0 8 8 0000000000 0 5555 00000000000000 0 0 0 5555555555555555 5 0 000 0 5555 000 5 0 5 5 000000000000000000 55 55 0 0000000000000000000000 0 0 0 5 0000000000000000000000000000000000000000 0 5 0000 0 77 0 0 0 0 0 0 0 5 7 0 0 333 0 0 0 3333333333333333333333 7 8 0 2 2 2 0 0 0 00 0 000 333 7 7777 7 8888 0 7 7 7 0 00000000000 4 0000 0 0 0 000 0 0000000 88 6 8 5 2 55 8 0 5 2 222222222222 2222 2 0 0 8 444 0 00000000 0 4 99 0000000000000000000000000000 7 7 77777777 0 1 7 6 777777777777 7 7 000 7 7 77777777777 5 7 0 8 222 7777777777777777777777777777777777777777777777777777777777777777777 0 7 22 7 9 000 7 99 7 3333333 6 0 2222 444444 7 7 99 55 0 0
consensus : NTACTATACTGAAC-NAAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGCGTTTTACAATTTTTGCTAAACAATTGGTCACAACTGATTGNNCGCANNCNATTTCAAAGCAAACNTCCACAGGGGTGTCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTCCACGAANCTCTGAAAANGGGAAAACGNCNACGGANCTNTCGGNATGAACGTANNAGAGCNATCAGGATGCCGTCAATGCNGGATGTCATCAACACATAGCGTGTAGCGCGACAATTTAANGCCCATCCCTCGANTATCAGTCGACTTTTGAGTCATTTTCGAGTAACAGGACAAGTCAGCGACCNTCGACGTNACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCGATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCTGCGCTGGACTCGGCGGCAA----------------------TGGAATACGGTTTCGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGGGT--CAGTTNTTATGGGAAAA--CATGCCTTGTCACAGTAAATGGAAATCTG-AATTCACAGCGTTA-TTGTGAAGAAANTGTGGTTCCTGTAGTTN-------TGCCGTTTTTGAACCAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACCTGATTNATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTGCTTC--------AGCAAG-AATGGAACCAAATCA--CGAT---------------------------ACACGAGCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGC-TA----------ATGGAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTGAC-------------------AT-----------------------TTTTT--TT-GAAAA-----TT-AGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACTG------AATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACTTTTTTTGTTCA
Reference ( gi|1 ) : GTAATATACTGAAC-CAAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGCTTTATACAATTTTTGCTAAATAATTGGTCAC----GATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG----------------TCCACGAATCTCTGAAAATG----AACGT-AACGGAGCTATCGGGATG--CTTAAC---GCT----GGATGTCGTCAA--CAGGATGT-------A----GCA-------CGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCTTCGCTGGATTCGGCGACAA----------------------TGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTTGGGGGGGGGGGGG----CAGTTCTTATGGGAAAA--CTTGCCTTGCCATAGTAAATGGAAATCTG-AATTCACAGCGTTA-TTGTGCAGAAATTGTGGTTCCTGTA--T--------TGCCGTTTTTGAACCAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAAATCA--CAATGTAT----------------------TACACGAGCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGC-TA----------GTGGAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTC-CTTTTTTCTGTGAC-------------------AT-----------------------TTT--------------------AGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACTA------AATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACTTTTTTTGTCCA
gi|5 : TACTATACTGAAC-AAAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTACAATTTTTGCTAAACAATTGGTCAC----GATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTC---AAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGC--TTAATGCTGGATGTCATCAACA----GCATGTAGCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|8 : taATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|12 : aaTACTGAAC-AAAAAAAG-TTTAGCAACTTaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : ttggaaatgccccatgtgcgatcgttgctcggatggagacattcataaaatactgaatacaactttctcatacggtgatgttgattatgcgatattaaatattacACTAAAC---AAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|7 : -CAAAAAAGTTT-AGCAATTTCATTT---------G-AAT-------GCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|2 : TTGAATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAG--------------TTTTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTT----CAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATAaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|2 : tcaaACG----------------TCCACGAATCTCTGAAAAAG----AACGG-AACAGAGCTATCGGTATG--TCTACA---GCA----GGATGTCGTCAA--CAGGATGT-------ACATAGCG-------CGACAATTTAAAGCCCATTCTTCGAATATTAGTCGAC----------TTTT-GAGTA---------GTT-------TTCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCTGCGATGGACTCGGCGGCAA----------------------TGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATGG--GGGAGGGGGGGGGGTGTCAGTTATTATGGGAAAA--CACGCCTTGTCACAGTAAATGGAAATCTG-AATTCACAGCGTTA-TTGTGGAGAAATTGTGGTTCCTGTAG-TTACATGTATGCCGTTTTTAAACCAGGTTT----AGCG-TGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACAttaaaaacgctgaaagtttgcagaaaattcaaaagggaaaacgtccacgaatctctgaaaaagaacggaacagagctatcggtatgtctacagcaggatgtcgtcaacaggatgtacatagcgcgacaatttaaagcccattcttcgaatattagtcgacttttgagtagttttcgagtaacagggcaggaaaacagcggttcgccaagaccgctttattgttatgacgtcgagacgtaaccgcttcatgtctgtacccaaagtcgccgatgagttacatcgggtgtctggagtgaggatgagtgatcagagtgtgagaaacaggttacagactgctaatctacgcgctcggatacctcttgttgcggttcctttgactcaacgtcatcgtcaaacttgtgttgcctgggcaactacccatctgcgatggactcggcggcaatggaatacggttttgtttactgacgagcgttgttttagtatggattttgcagatggacgcgtttgtgtttggagacgacgacataagtggtttgatcccgaaaacgtcattcaacctgaccgctatgatggtggtagtgtcatgggggaggggggggggtgtcagttattatgggaaaacacgccttgtcacagtaaatggaaatctgaattcacagcgttattgtggagaaattgtggttcctgtagttacatgtatgccgtttttaaaccaggtttagcgtgtaccatatatgtcatacagatagcgtgatcaacgttcgaccgcacaa
gi|4 : tcaattgaatttaggtaattttcactgcatcattttggaggatttataattttatttttctaatactctaacacgcagagaaagcaatgcatgagtgatcataacaatatgcgccacatgaacgccacgagtttttgctaaacaattggtcacaactgattgcacgcaatttcaaagcaaacttctacaggagtgtcatttcgaacatgcgtacatattaaaaacgctgaaagtttgcagaaaattcaaaagggaaaGGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGAGGGGAAT----CAGTTTTTATGGGAAAA--CATGTCTTGTCATAGTAAATGGAAATCTG-AATTCACAGCGTTA-TTGTGCAGAAATTGTGGTTCCTGTAG-TTG------TGCCATTTTTGAACTAGGGTCAATTAA-G-T-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGA--CA--TAACGTa
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCTGCGCTGAACTCGGTGGCAA----------------------TGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGGAT--CAGTTCTGATGGGAAAA--CATGCCTTGTCATAGTAAATGGAAATCTG-AATTCACACCGTTA-TTGTGCAGAAATTGTGGTTCCTGTAGTTA-------TGCCGTTTTTGAACTAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNNNNNN--NNNNNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGC-CAATCCATTGATGTGG-GGCCATACATAAGTATTGAAGAACGTG-GTTTCTATA-CTTACCCTTTC-TTTTTTCTTGTGACATTTTTCTCGTTAAAATTGAT-----------------------TTT--------------------AGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACTG------AATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACTTTTTTTGTcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|16 : ACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgatttc
gi|11 : ggaaaTATGGAAAAAAACATGCGTTGTCACTGTAAATGGAAATCGA-AATTCACAACGTTA-TTGTGAAGAGAATATGGTTCCTGTAGTTG-------TGCCATTTTTGCACCAGAGTC----AA-GGT-TAC-ATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGAC
gi|13 : GTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCCT
gi|6 : gtatatatggaaaatgattacatgcggttggtcctTCTA-AATTCGCAGCGTTG-CTGTGAAGAAAATGTTATTCCTGTAGATG-------TGCCGTTTTCAAAC-AGGGTT----AA-G-T-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGAC------------AACACAC--AATACATTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAAATCA--CAATATA---------------------------CGAGCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTC-TA----------ATGTAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTT--CTCTTTTCTGTGAC-------------------ATTTTGTTTTTGTATGAAAAATTGATTT--------------------AGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGTG------AATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTagttgtttgga
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAAATCA--CAA---------------------------TACACGAGCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGC-TA----------ttatttctaagta
gi|10 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAACTCAAACAAT---------------------------ACACGAGCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGC-TA----------ATGGAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT-----TTTTCTGTAACTT-----------------AT-----------------------TTTTCGTTTGAAAAATTGTTTC-AGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACTTTTTTT
gi|7 : TGGAACCAAATCA--CGAT---------------------------ACACGAGCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA----------G-GGAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGAC-------------------ATTTTTTCGTTTGAAAAATTGA---TTT--------------------AGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACTG------AATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACTTTTTTTGTtgtg
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtTGGAACCAAATCA--CGAT---------------------------ACACGAGCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGC-TA----------ATGGAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTAAC-------------------AT-----------------------TTTTTCGTTTGAAAAAATGATTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACTG------AATACtaaata
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtTGGAACCAAATCA--CGAT---------------------------ACACGAGCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGC-TA----------ATGGAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTAAC-------------------AT-----------------------TTTTTCGTTTGAAAAATTGATTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACTG------AATAC
gi|12 : actaaacaaaaagtttagcaatttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatatttttgatactctaacacgcaagcagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggt-GATGGAGACAT---TCAT-AA--AATACTG------AATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACTTTTTTTGTTCA
gi|14 : ttggaaatgccccatgtgcgatcgttgctcgTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACTTTTTTCGTTCAgta
gi|15 : GAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC-TCTTTTGTTCA
gi|5 : cAAATTGCTAAACTCTTTTTGTTCAgta
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 11 1111 111 9999999999 11 333 7777777777777777777 2222 4444444 777777 11111111111 111 888888888888888888888888 11 1 222222 11111111 111111 1111 2222222 22222222 11111 44444444444444444444 1111111 11111111 222222222222 11111 1111 11111111111111111111111111 111111 1111 111111
lowQualScore : 2 6 88 8 6 3 6 99 2 2222 555 0000000000 1 0 11 3 77 11 777 1 6 0000000000000000000 5555 1 1 1111111 1 1 333333 99 1 0 1 33333333333 7 7777 1 6 1 0 6 1 6 2 1 2 777 111111111111111111111111 0 2 33 2 0 2 222222 1 66666666 99 5 5 3 1 666666 1 3 4444 6 6 6 666 6 1111111 6 9 11 1 5 77 5 0 4 44444444 6 4 66 22222 00000000000000000000 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 55 77 77777777777777777777777777 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . .. . . . . .. . .... ... .......... . . .. . .. .. ... . . ................... .... . . ....... . . ...... .. . . . ........... . .... . . . . . . . . . . ... ........................ . . .. . . . ...... . ........ .. . . . . ...... . . .... . . . ... . ....... . . .. . . .. . . . ........ . . .. ..... .................... ....... . . ........ . ............ . . ... . ..... .... . .. .. .......................... . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 5 5 88 0 7 3 7 22 5 3333 000 3333333333 0 7 00 7 33 77 333 0 7 0000000000000000000 7777 0 0 0000000 0 0 333333 77 0 7 0 33333333333 3 7777 0 7 0 7 7 0 7 0 0 0 555 222222222222222222222222 6 8 88 5 0 5 555555 0 88888888 22 7 7 4 0 444444 0 7 2222 7 7 7 888 7 7777777 7 6 44 0 0 88 0 6 0 22222222 7 4 11 55555 66666666666666666666 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 99 99 66666666666666666666666666 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC-TT-TACAATTTTTGCTAAACAATTGGTCACGACTGATTGCACGCA----ATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTCCAGAAAATTC---AAATGGGAAAACGTCCACGAATCTCTGAAAA-GAACG-AACAGAGCTATCGGGATGC--TTAACGCTGGATGTCGTCAAC-----AGNACGTAGCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTGAC--ATTTT-TTCGTT-----TG--AAAAATTGATTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTACTATACTGAACN-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGCGTTTTACAATTTTTGCTAAACAATTGGTCACAACTGATTGNNCGCANNCNATTTCAAAGCAAACNTCCACAGGGGTGTCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTCCACGAANCTCTGAAAANGGGAAAACGNCNACGGANCTNTCGGNATGAACGTANNAGAGCNATCAGGATGCCGTCAATGCNGGATGTCATCAACAC-ATAGCGTGTAGCGCGACAATTTAANGCCCATCCCTCGANTATCAGTCGACTTTTGAGTCATTTTCGAGTAACAGGACAAGTCAGCGACCNTCGACGTNACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCGATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTCGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTNTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGAAGAAANTGTGGTTCCTGTAGT------TNTGCCGTTTTTGAACCAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACCTGATTNATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTGAC--ATTTT-T---TT-----TG--AAAA------TTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGCTTTATACAATTTTTGCTAAATAATTGGTCAC----GATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG----------------TCCACGAATCTCTGAAAATG----AACGT-------------------AACG-----GAGCTATCGGGATGC--TTAACGCTGGATGTCGTCAAC-----AGGATGTAGCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA---------TTGCCGTTTTTGAACCAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTC-CTTTTTTCTGTGAC--ATT----------------------------TTAGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCA
gi|10 : gCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACC----C-TTTTTTTCTGTAACTTATTTT-TCG-TT-----TG--AAAAATTGTTTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AA-GGT-TAC-ATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT--------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCA----ATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTC---AAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGTCTACA--GCAGGATGTCGTCAACAGGAT-GTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTG-----------AGTA---------GTT-------TTCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCG-TGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-G-T-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNN-----NNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTC-TTTTTTCTTGTGAC--ATTTT-T---CT-----CGTTAAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-G-T-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTACAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCA----ATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTC---AAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGC--TTAATGCTGGATGTCATCAAC-----AGCATGTAGCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-G-T-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAA-----TA--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC--TCTTTTCTGTGAC--ATTTTGT---TTTTGTATG--AAAAATTGATTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGAC--ATTTT-TTCGTT-----TG--AAAAATTGATTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTAAC--ATTTT-TTCGTT-----TG--AAAAAATGATTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAAC---AAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTC-TTTTTTTCTGTAAC--ATTTT-TTCGTT-----TG--AAAAATTGATTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
Alignments
lowQualScore : 333333 4 4 2222 333 111 888888888888888888888888 11 1 222222 11111111 111111 1111 1 2222222 22222222 44444444444444444444444444 1111111 11111111 222222222222 11111 1111 111 111111 1111 111111
lowQualScore : 1 6 8 0 8 6 1 6 99 2 444444 0 7 3 2 4 0 0 3 1 6 8888 777 3 3 6 0 6 1 6 1 777 111111111111111111111111 0 33 2 0 2 222222 0 66666666 99 5 5 1 1 666666 1 3 4444 3 6 666 6 1111111 6 3 11 1 3 88 5 0 1 0 44444444 6 4 66 55555555555555555555555555 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 3 5 5 000 5 1 5 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . . . . . . . .. . ...... . . . . . . . . . . .... ... . . . . . . . . ... ........................ . .. . . . ...... . ........ .. . . . . ...... . . .... . . ... . ....... . . .. . . .. . . . . ........ . . .. .......................... ....... . . ........ . ............ . . ... . ..... .... . . . . ... . . . . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 0 5 0 8 0 7 0 7 22 5 777777 7 3 7 5 0 0 0 7 0 0 3333 777 7 7 7 7 7 0 7 0 555 222222222222222222222222 6 88 5 0 5 555555 2 88888888 22 7 7 0 0 444444 7 7 2222 3 7 888 7 7777777 7 8 44 0 8 00 0 6 0 7 22222222 7 4 11 44444444444444444444444444 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 6 7 7 000 7 4 7 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TT--TACAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAANGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACGGAGCTATCGGGATGCTTAACGCTGGATGTCGTCAACAGGATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGAT-----A--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TT--TACAATTTTTGCTAAACAATTGGTCACGACTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAA-GAACG-AACAGAGCTATCGGGATGCTTAACGCTGGATGTCGTCAACAGNACGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGAT-----A--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGC--TTTATACAATTTTTGCTAAATAATTGGTCACGATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG
gi|1 : gACGTCCACGAATCTCTGAAAATGAACGTAACGGAGCTATCGGGATGCTTAACGCTGGATGTCGTCAACAGGATGTA----GCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA--------T-TGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTCCTTT-TTTCTGTGACAT-T---TT----------------------AGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCAtccacgaatctctgaaaatgaacgtaacggagctatcgggatgcttaacgctggatgtcgtcaacaggatgtagcacgacaatttaatgtccatctctcaactatcagtcgacttgtgagtcgttttagagtaacaggacaagtcagcaaccgtcgacgtcatgggcgtacacggaaaacaacggttcaccaagacagatttattgttacgacgtcgagacgtaatcgcttcatatctacacccaaagtcgccactgagttacatcggtcgtctggagtgagggtgggtgttcagagtgtgagaaacaggttacagactgctaatctacgcgctcggagacctcttgttgcggtctctttgactcgacgtcatcgtcaaactcgtgttgcctgggcaaccacccatcttcgctggattcggcgacaatggactacaattttgtttactggcgaatcttgttttaatgtggattttgcagatggacgcgctcgtgcttggagaagacgaaatgagcggttccattcccccaaaccttcattcaacgtgaccgctatggtggtggtagtgtcatggttgggggggggggggcagttcttatgggaaaacttgccttgccatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtattgccgtttttgaaccagggtcaagttaccatatttcaacaggataacgctcgaccgctcactgcgcgacacaccaaggacgttttacggcagaacaatatcaaagtactggaatggcctgcaagatcacatgatctatcaccaattgagcatgtgtgagacatgcttggtcgaagtgtgagagagcgacataacgtcaacaacgtagccgatttgagtcgaacgcctcagcaagaatggaaccaaatcacaatgtattacacgagctccgaaacctcatcagaagtatgagatgtcgatgtttggctgtggtagctgctagtggaggtcatacaaagcattgaagaacgtgtattttcataccttaccctttccttttttctgtgacattttagagattattatggcatgtttttatttttgtttgatggagatattcataaatactaaatacaaatttttcacatatggtgatgttgattatgcgatattaaatattacaagttgctaaactttttttgtcca
gi|10 : gtaatatactgaaccaaaaaagttttagcaatttcattttcaatgtaggtaattttgtctgcattattttagaggctttctgattttacctttttaatactgtaacacgcagagaaagcaacacatgagtgatcagcacaatatgcgccacgtgaacgccatgggttggctttatacaatttttgctaaataattggtcacgattgcaaaacaaacatccacaggggtatcatttcgaacacgagtacacCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAAT-----A--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT----T-TTTCTGTAACTTAT---TTT-TCGTTTGAAAAATTGT-TTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AAGGT-TA-CATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT----------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTCAAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGTCTACAGCAGGATGTCGTCAACAGGATGTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTGAGTAGTTT---------------------------TCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCGTGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNNN-----NNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTCTTTT-TTCTTGTGACAT-T---TTTCTCGTT---AAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-GT-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAAT-----A--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTT--TACAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGCTTAATGCTGGATGTCATCAACAGCATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-GT-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAAT-----A--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC-TCT-TTTCTGTGACAT-TTTGTTT-TTGTATGAAAAATTGA-TTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGAT-----A--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGAT-----A--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAAATGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAACA-AAA--AGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGAT-----A--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
Alignments
lowQualScore : 33333333 11 1 111 11 11 2222 333 111 888888888888888888888888 11 1 222222 11111111 111111 1111 1 2222222 22222222 11111 44444444444444444444 1111111 11111111 222222222222 11111 1111 11111 111111 1111 111111
lowQualScore : 1 6 8 0 8 6 1 6 99 2 22222222 7 11 7 999 1 888888 6 7 7 8888 999 3 44 00 6 8888 777 3 3 6 0 6 1 6 1 777 111111111111111111111111 0 33 2 0 2 222222 0 66666666 99 5 5 1 1 666666 3 4444 3 6 666 6 1111111 6 3 11 1 3 88 5 0 1 0 44444444 6 4 66 22222 00000000000000000000 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 3 5 33333 5 1 5 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . . . . . . . .. . ........ . .. . ... . ...... . . . .... ... . .. .. . .... ... . . . . . . . . ... ........................ . .. . . . ...... . ........ .. . . . . ...... . .... . . ... . ....... . . .. . . .. . . . . ........ . . .. ..... .................... ....... . . ........ . ............ . . ... . ..... .... . . . ..... . . . . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 0 5 0 8 0 7 0 7 22 5 77777777 3 00 3 333 0 333333 7 3 3 3333 000 7 33 33 7 3333 777 7 7 7 7 7 0 7 0 555 222222222222222222222222 6 88 5 0 5 555555 2 88888888 22 7 7 0 0 444444 7 2222 3 7 888 7 7777777 7 8 44 0 8 00 0 6 0 7 22222222 7 4 11 55555 66666666666666666666 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 6 7 77777 7 4 7 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGT--TTAACGC-GGATGTCGTCAACAG-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAANGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACGGAGCTATCGGGATGC--TTAACGCTGGATGTCGTCAACAGGATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGC--TTTATACAATTTTTGCTAAATAATTGGTCACGATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG---TCCAC-GAA---TCTCTGAAAAT----------GAACGT-AACGGAGCTATCGGGATG--CTTAAC---GCT----GGATGTCGTCAACA--GGATGT--------------A----GCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA-T--------TGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTCCTTT-TTTCTGTGACAT--------------------------TTTAGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCA
gi|10 : gCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT----T-TTTCTGTAACTTAT---TTT-TCGTTTGAAAAATTGT-TTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AAGGT-TA-CATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT----------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTCAAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGT--CTACAGCAGGATGTCGTCAACAGGATGTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTGAGTAGTTT---------------------------TCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCGTGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNN-----NNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTCTTTT-TTCTTGTGACAT-T---TTTCTCGTT---AAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-GT-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGC--TTAATGCTGGATGTCATCAACAGCATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-GT-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAA-----TA--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC-TCT-TTTCTGTGACAT-TTTGTTT-TTGTATGAAAAATTGA-TTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAAATGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAACA-AAA--AGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
Alignments
lowQualScore : 33333333 11 222222 55555555 333 2222 333 111 888888888888888888888888 11 1 222222 11111111 111111 1111 1 2222222 22222222 11111 44444444444444444444 1111111 11111111 222222222222 11111 1111 11111 111111 1111 111111
lowQualScore : 1 6 8 0 8 6 1 6 99 2 22222222 7 11 7 999 1 999999 6 7 7 8888 22222222 000 8888 777 3 3 6 0 6 1 6 1 777 111111111111111111111111 0 33 2 0 2 222222 0 66666666 99 5 5 1 1 666666 3 4444 3 6 666 6 1111111 6 3 11 1 3 88 5 0 1 0 44444444 6 4 66 22222 00000000000000000000 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 3 5 33333 5 1 5 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . . . . . . . .. . ........ . .. . ... . ...... . . . .... ........ ... .... ... . . . . . . . . ... ........................ . .. . . . ...... . ........ .. . . . . ...... . .... . . ... . ....... . . .. . . .. . . . . ........ . . .. ..... .................... ....... . . ........ . ............ . . ... . ..... .... . . . ..... . . . . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 0 5 0 8 0 7 0 7 22 5 77777777 3 00 3 333 0 333333 7 3 3 3333 77777777 000 3333 777 7 7 7 7 7 0 7 0 555 222222222222222222222222 6 88 5 0 5 555555 2 88888888 22 7 7 0 0 444444 7 2222 3 7 888 7 7777777 7 8 44 0 8 00 0 6 0 7 22222222 7 4 11 55555 66666666666666666666 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 6 7 77777 7 4 7 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGTCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGTTTAACGC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGC--TTTATACAATTTTTGCTAAATAATTGGTCACGATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG---TCCAC-GAA---TCTCTGAAAAT----------GAACGT-AACGGAGCTATCGGGATG--CTTAAC---GCT----GGATGT--------------CGTCAACAGG-ATGTA----GCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA-T--------TGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTCCTTT-TTTCTGTGACAT--------------------------TTTAGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCA
gi|10 : gCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT----T-TTTCTGTAACTTAT---TTT-TCGTTTGAAAAATTGT-TTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AAGGT-TA-CATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT----------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTCAAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGTCTACAGCAGGATGTCGTCAACA-GGATGTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTGAGTAGTTT---------------------------TCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCGTGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNN-----NNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTCTTTT-TTCTTGTGACAT-T---TTTCTCGTT---AAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-GT-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGCTTAATGCTGGATGTCATCAACA-GCATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-GT-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAA-----TA--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC-TCT-TTTCTGTGACAT-TTTGTTT-TTGTATGAAAAATTGA-TTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAAATGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAACA-AAA--AGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
Alignments
lowQualScore : 33333333 11 222222 777777777 333 2222 333 111 888888888888888888888888 11 1 222222 11111111 111111 1111 1 2222222 22222222 11111 44444444444444444444 1111111 11111111 222222222222 11111 1111 11111 111111 1111 111111
lowQualScore : 1 6 8 0 8 6 1 6 99 2 22222222 7 11 7 999 1 999999 6 7 7 8888 444444444 000 8888 777 3 3 6 0 6 1 6 1 777 111111111111111111111111 0 33 2 0 2 222222 0 66666666 99 5 5 1 1 666666 3 4444 3 6 666 6 1111111 6 3 11 1 3 88 5 0 1 0 44444444 6 4 66 22222 00000000000000000000 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 3 5 33333 5 1 5 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . . . . . . . .. . ........ . .. . ... . ...... . . . .... ......... ... .... ... . . . . . . . . ... ........................ . .. . . . ...... . ........ .. . . . . ...... . .... . . ... . ....... . . .. . . .. . . . . ........ . . .. ..... .................... ....... . . ........ . ............ . . ... . ..... .... . . . ..... . . . . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 0 5 0 8 0 7 0 7 22 5 77777777 3 00 3 333 0 333333 7 3 3 3333 000000000 000 3333 777 7 7 7 7 7 0 7 0 555 222222222222222222222222 6 88 5 0 5 555555 2 88888888 22 7 7 0 0 444444 7 2222 3 7 888 7 7777777 7 8 44 0 8 00 0 6 0 7 22222222 7 4 11 55555 66666666666666666666 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 6 7 77777 7 4 7 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGTCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGC--TTTATACAATTTTTGCTAAATAATTGGTCACGATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG---TCCAC-GAA---TCTCTGAAAAT----------GAACGT-AACGGAGCTATCGGGATG--CTTAAC---GCT----GGATG--------------TCGTCAACAGG-ATGTA----GCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA-T--------TGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTCCTTT-TTTCTGTGACAT--------------------------TTTAGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCA
gi|10 : gCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT----T-TTTCTGTAACTTAT---TTT-TCGTTTGAAAAATTGT-TTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AAGGT-TA-CATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT----------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTCAAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGTCTACAGCAGGATGTCGTCAACA-GGATGTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTGAGTAGTTT---------------------------TCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCGTGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNN-----NNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTCTTTT-TTCTTGTGACAT-T---TTTCTCGTT---AAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-GT-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGCTTAATGCTGGATGTCATCAACA-GCATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-GT-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAA-----TA--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC-TCT-TTTCTGTGACAT-TTTGTTT-TTGTATGAAAAATTGA-TTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAAATGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAACA-AAA--AGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
Alignments
lowQualScore : 33333333 11 222222 777777777 333 2222 333 111 888888888888888888888888 11 1 222222 11111111 111111 1111 1 2222222 22222222 11111 44444444444444444444 1111111 11111111 222222222222 11111 1111 11111 111111 1111 111111
lowQualScore : 1 6 8 0 8 6 1 6 99 2 22222222 7 11 7 999 1 999999 6 7 7 8888 333333333 000 8888 777 3 3 6 0 6 1 6 1 777 111111111111111111111111 0 33 2 0 2 222222 0 66666666 99 5 5 1 1 666666 3 4444 3 6 666 6 1111111 6 3 11 1 3 88 5 0 1 0 44444444 6 4 66 22222 00000000000000000000 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 3 5 33333 5 1 5 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . . . . . . . .. . ........ . .. . ... . ...... . . . .... ......... ... .... ... . . . . . . . . ... ........................ . .. . . . ...... . ........ .. . . . . ...... . .... . . ... . ....... . . .. . . .. . . . . ........ . . .. ..... .................... ....... . . ........ . ............ . . ... . ..... .... . . . ..... . . . . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 0 5 0 8 0 7 0 7 22 5 77777777 3 00 3 333 0 333333 7 3 3 3333 777777777 000 3333 777 7 7 7 7 7 0 7 0 555 222222222222222222222222 6 88 5 0 5 555555 2 88888888 22 7 7 0 0 444444 7 2222 3 7 888 7 7777777 7 8 44 0 8 00 0 6 0 7 22222222 7 4 11 55555 66666666666666666666 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 6 7 77777 7 4 7 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGC--TTTATACAATTTTTGCTAAATAATTGGTCACGATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG---TCCAC-GAA---TCTCTGAAAAT----------GAACGT-AACGGAGCTATCGGGATG--CTTAAC---GCT----GGATG--------------TCGTCAACAGG-ATGTA----GCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA-T--------TGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTCCTTT-TTTCTGTGACAT--------------------------TTTAGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCA
gi|10 : gCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT----T-TTTCTGTAACTTAT---TTT-TCGTTTGAAAAATTGT-TTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AAGGT-TA-CATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT----------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTCAAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGTCTACAGCAGGATGTCGTCAACA-GGATGTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTGAGTAGTTT---------------------------TCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCGTGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNN-----NNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTCTTTT-TTCTTGTGACAT-T---TTTCTCGTT---AAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-GT-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGCTTAATGCTGGATGTCATCAACA-GCATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-GT-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAA-----TA--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC-TCT-TTTCTGTGACAT-TTTGTTT-TTGTATGAAAAATTGA-TTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAAATGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAACA-AAA--AGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
blockSeqs : C G C . . T A GC T GTTTTA A TA T AGT G TCAAAA C A A ATCG TCTACAGCA GG CATA TCA G A C C G C A GAC TCGCTGGACTCGGCGGCAANTTTC . G T G GGGTGT TGATTA GG A T A A TACATG C AATT G G ATG T ATAGCGT C T AT T C AT T T CCATGAGG G C AA . NNNNNNNNNNNNNNCCCAAT TACACGA T A GCATGCAT T TTCTCCTTT T A ATG C TCCAT ATGT T T T TTTG C T T A AC A CCC C AC A AAATAC TTGC AACTTA T T TT G TG
blockSeqs : A . . . C . . G . A AA T AGC C TCAAAT C A A ATCA CTTAATGCT GC . . . . . . C . C . GC . G . G AT AAA . . . A A . C . C . C . . . C AT A C TA G T . . . . . . . . . . . TCAT . . . . . . . T . AT . T . . . . . . . . . C . . . TG A .
blockSeqs : . . . . A . . G . GC . . . . AT A . . . G T . T . . . T . . . T AG A A TC G A . . . . . . . . . . . T . . . . . . . T . T . T . . . . . . . . . T . . . TG A .
blockSeqs : . . . A . . G A . . . C T . T . . . T . . . . . . . . . A . . . . . . . . . . . T . . . . . . . T . T . T . . . . . . . . . C . . . TA A .
blockSeqs : . A . . . A . . . C T . . . . . T . . . T . . . . . . . . . . . T . . . . . . . . . T . T . . . . . . . . . . . . . TG A .
blockSeqs : . . A A . . . . . . . . . . T . . . . . . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ***** T****
originalCons : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
finalCons : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACATT----TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Alignments
lowQualScore : 33333333 11 222222 777777777 333 2222 333 111 888888888888888888888888 11 1 222222 11111111 111111 1111 1 2222222 22222222 11111 44444444444444444444 1111111 11111111 222222222222 11111 1111 11111 111111 1111 111111
lowQualScore : 1 6 8 0 8 6 1 6 99 2 22222222 7 11 7 999 1 999999 6 7 7 8888 333333333 000 8888 777 3 3 6 0 6 1 6 1 777 111111111111111111111111 0 33 2 0 2 222222 0 66666666 99 5 5 1 1 666666 3 4444 3 6 666 6 1111111 6 3 11 1 3 88 5 0 1 0 44444444 6 4 66 22222 00000000000000000000 6666666 5 5 88888888 5 444444444444 5 5 888 5 44444 2222 5 3 5 33333 5 1 5 5 77 5 888 5 66 5 444444 0 2222 444444 5 5 00 11 2 66
lowQualScore : . . . . . . . . .. . ........ . .. . ... . ...... . . . .... ......... ... .... ... . . . . . . . . ... ........................ . .. . . . ...... . ........ .. . . . . ...... . .... . . ... . ....... . . .. . . .. . . . . ........ . . .. ..... .................... ....... . . ........ . ............ . . ... . ..... .... . . . ..... . . . . .. . ... . .. . ...... . .... ...... . . .. .. . ..
lowQualScore : 0 5 0 8 0 7 0 7 22 5 77777777 3 00 3 333 0 333333 7 3 3 3333 777777777 000 3333 777 7 7 7 7 7 0 7 0 555 222222222222222222222222 6 88 5 0 5 555555 2 88888888 22 7 7 0 0 444444 7 2222 3 7 888 7 7777777 7 8 44 0 8 00 0 6 0 7 22222222 7 4 11 55555 66666666666666666666 2222222 0 0 11111111 0 000000000000 0 0 888 0 33333 1111 7 6 7 77777 7 4 7 7 99 0 888 0 99 0 444444 7 7777 444444 0 0 22 55 0 99
consensus : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
Reference ( family-6046 ) : NTANTATACTGAACA-AAAAAAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTATNTTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGC--TTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGGTATCATTTCGAACACGCGTACACACGAAAAACGCTGAAAGCTTNCAGAAAATTCAAA-GGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCGGGATGCCTA--GC-GGATGTCGTCAACA-G-ATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCGTTTT-GAGTAACAGGACAAGTCAGCGACCGTCGACGTCACGGGCGTNCACGGAAAACAACGGTTCGCCAAGACAGATTTATTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGNTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------GC-------GCTGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGAGGGGGGG----GTCAGTTCTTATGGGAAA-----A--CATGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGNAGAAANTGTGGTTCCTGTAGT------TGTGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACTGCGCGACACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAGATCACNTGATTTATCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGNGCGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATACA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACGAATTTCTCA---CATACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|1 : TAATATACTGAACC-AAAAAAGTTTTAGCAATTTCATTTTCAATGTAGGTAATTTTGTCTGCATTATTTTAGAGGCTTTCTGATTTTACCTTTTTAATACTGTAACACGC-AG--AGAAAGCAACACATGAGTGATCAGCACAATATGCGCCACGTGAACGCCATGGGTTGGC--TTTATACAATTTTTGCTAAATAATTGGTCACGATTG--------------CAAAACAAACATCCACAGGGGTATCATTTCGAACACGAGTACACACG---TCCAC-GAA---TCTCTGAAAAT----------GAACGT-AACGGAGCTATCGGGATG--CTTAAC---GCT----GGATG--------------TCGTCAACAGG-ATGTA----GCACGACAATTTAATGTCCATCTCTCAACTATCAGTCGACTTGTGAGTCGTTTTAGAGTAACAGGACAAGTCAGCAACCGTCGACGTCATGGGCGTACACGGAAAACAACGGTTCACCAAGACAGATTTATTGTTACGACGTCGAGACGTAATCGCTTCATATCTACACCCAAAGTCGCCACTGAGTTACATCGGTCGTCTGGAGTGAGGGTGGGTGTTCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGAGACCTCTTGTTGCGGTCTCTTTGACTCGACGTCATCGTCAAACTCGTGTTGCCTGGGC---AACCACCCATCT---------------TC-------GCTGGATTCGGCGACAATGGACTACAATTTTGTTTACTGGCGAATCTTGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGCTTGGAGAAGACGAAATGAGCGGTTCCATTCCCCCAAACCTTCATTCAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-GGGGGGGGGGGG----G-CAGTTCTTATGGGAAA-----A--CTTGC--CTTGCCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTA-T--------TGCCGTTTTTGAACCAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCTCACTGCGCGACACACCAAGGACGTTTTACGGCAGAACAATATCAAAGTACTGGAATGGCCTGCAAGATCACATGATCTATCACCAATTGAGCATGTGTGAGACATGCTTGGTCGAAGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGAACGCCTC--------AGCAAG-AATGGAACCAA-ATCA--CAATGTATTA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGTATGA-GATGTCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAG-----TG----GAGGTCATACA-AAGCATTGAAGAACGTGTATTTTCATACCTTACCCTTTCCTTT-TTTCTGTGACAT--------------------------TTTAGAGATTATTATGGCATGTTTTTATT-TTTGT--TT-GATGGAGATAT---TCAT-AA--A-TACT------AAATACAAATTTTTCA---CATATGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTCCA
gi|10 : gCGATTTGAGTCGTGCGCTTCCCATGAGGGGCAAGGAATGAAACAAA-CTCAAACAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CATGCATGCATCAGACACACGA-GAAGTCGA--------TCATG-TATGGCGG-T---GGTTG-CTGCTAA-----TG----GAGGCCATAGA-AAGTATTGAATAACATGAATTTTCATACCTTACCCTTT----T-TTTCTGTAACTTAT---TTT-TCGTTTGAAAAATTGT-TTCAGAGATTATTATGACATATTTTCATT-TTTAT--TT-GATGGAGATAT---TAAT-AA--A-TACTAAATACGAATACGAATTTCTTA---CATGTGCTAACTTAAATG-TTGA-TTATGCGATATAAAATATT-----TTTCTGAACT--TTTTTT
gi|11 : TATGGAAAA-----AAACATGC--GTTGTCACTGTAAATGGAAATCGAAA-TTCACAACGTTATT-GTGAAGAGAATATGGTTCCTGTAGT------TGTGCCATTTTTGCACCAGAGTC----AAGGT-TA-CATAT-C-TCA-ACAG-------GAT-AACACTCGAACGCACACTGAGCTACACACCCGGGACGTTTTACGGCAGAACAACATCGACGTACTAGAATGGATTTCAAGATCTTCTGATATATCACCAATTGAGCATATTTGGGACATTCTTGGTCGACGTGTAGGAGAGCAACATGACtgtg
gi|12 : -GATGGAGACAT---TCAT-AA--AATACT------GAATACAACTTTCTCA-----TACGGT------GATG-TTGA-TTATGCGATATTAAATATTACAAGTTGCTAAACT--TTTTTTGTTCA
gi|13 : ttggaaatgccccatgtgcgatcgttgctcgTATGGAAAATGATTA--CATGCGGTTGGTC-CTGTAAATGGAAATCGGAAATTCACAACGTTATTTGTGAAGAGAATATGGTTCC--TAGT------TGTgta
gi|14 : gtataTATGGT------GATG-TTGA-TTATACGATATTAGATATTACAAGTTGCTAAACT--TTTTTCGTTCAttgga
gi|15 : CGAT------GATG-TTGA-TTATGCGATATTAAATATGACAAGTTACTAAAC---TCTTTTGTTCA
gi|16 : GGAAAACGGTTTCATTTACTGACGAATTTCGTTTTCATATGGATTTTGCAGATgta
gi|2 : TCAATTG-AATTTAGGTAATTTTCACTGCATCATTTTGGAGGATTTATAATTTTATTTTTCTAATACTCTAACACGC-AG--AGAAAGCAATGCATGAGTGATCATAACAATATGCGCCACATGAACGCCACGAGTT----------------TTTGCTAAACAATTGGTCACAACTGATTGCACGCAATTTCAAAGCAAACTTCTACAGGAGTGTCATTTCGAACATGCGTACATATTAAAAACGCTGAAAGTTTGCAGAAAATTCAAAAGGGAAAACGTCCACGAATCTCTGAAAAAGAACGGAACAGAGCTATCGGTATGTCTACAGCAGGATGTCGTCAACA-GGATGTACATAGCGCGACAATTTAAAGCCCATTCTTCGAATATTAGTCGACTTTTGAGTAGTTT---------------------------TCGA-GTAACAGG---GCA-GGAAAACAGCGGTTCGCCAAGACCGCTTTATTGTTATGACGTCGAGACGTAACCGCTTCATGTCTGTACCCAAAGTCGCCGATGAGTTACATCGGGTGTCTGGAGTGAGGATGAGTGATCAGAGTGTGAGAAACAGGTTACAGACTGCTAATCTACGCGCTCGGATACCTCTTGTTGCGGTTCCTTTGACTCAACGTCATCGTCAAACTTGTGTTGCCTGGGC---AACTACCCATCT---------------GC-------GATGGACTCGGCGGCAATGGAATACGGTTTTGTTTACTGACGAGCGTTGTTTTAGTATGGATTTTGCAGATGGACGCGTTTGTGTTTGGAGACGACGACATAAGTGGTTTGAT--CCCGAAAACGTCATTCAACCTGACCGCTATGATGGTGGTAGTGTCATG----GGGGAGGGGGGGGGGTGTCAGTTATTATGGGAAA-----A--CACGC--CTTGTCACAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGGAGAAATTGTGGTTCCTGTAGTTACATGTATGCCGTTTTTAAACCAGGTTT----AGCGTGTACCATATATGTCATACAGATAGCGTGATCAACGTTCGACCGCACA
gi|3 : GTTACAGACTGCTAATCTACGCGCTCGGGGACCTCTTGTTGTGGTCCCTTTGACTCAACGTCATCGTCAAACTCGTGTTGCCTGGACGACAACCACCCATCT---------------GC-------GCTGAACTCGGTGGCAATGGAATACAGTTTTGTTTACTGGCGAGTCTCGTTTTAATGTGGATTTTGCAGATGGTCGCGCCCGTGTTTGGAGACGACAAAATGAGCGGTTTCAT--CCCGAAAACGTCATTCAATGTGAACGCTAAGGTGGTGGTAGTGTCATGGTTTGGGGAGGGGGGG----ATCAGTTCTGATGGGAAA-----A--CATGC--CTTGTCATAGTAAATGGAAATCTGAA-TTCACACCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TATGCCGTTTTTGAACTAGGGTC----AA-GT-TACCATAT-T-TCA-ACAG-------GAT-AACGCTCGACCGCACACCGCGCGACACACCCAGGACGTTTGACGGCAGAACAATATCGACGTACTGGCATGGCCCGCAAGATCACCTGATTAATCACCAATTTAGCATGTGTGGGATATTCTTGGTCGACGTGTGAGAGAGCGACATAACGTCAACAACGTAGCCGATTTGAGTCGTGTACTTA--------ATCAAG-AATGGAACCNN-NNNN--NNN-----NNNNNNNNNNNNNNNNCCCAATCACGATACACGAGCTCCG--ACTCT-CAT--------CAGAAGCA-GATGACGTCGATTCTCCTTT---GTTTTCGCTGATATGGGTAGCCTGCCAATCCATTGATGTGGGGCCATACATAAGTATTGAAGAACGTGG-TTTCTATA-CTTACCCTTTCTTTT-TTCTTGTGACAT-T---TTTCTCGTT---AAAATTGATTTTAGAGATTA-TATGGCATGTTTTCATT-TTTGTACTTAGATGGAGACATCCCTCATCAAACA-TACT------GAATACAACTTTCTCATTGCG-GCGGT------GATGTTTGATTTATGCGATATTAAATTTTACAAGTTGCT-AACT--TTTTTTGTa
gi|4 : GGAAAACAACGGTTTGCCAAGACAGATTATTTGTTACGACGTCGAGACGTAACCGCTTCATGTCTGCACCCAAAGTCGCCAATGAGTTACATCGGGCGTCTGGAGTGAGGATGAGTGCTCAGAGTGTGAGAAACAGGTTACGGACTGCTAATCTACGTGCTCGGAGACCTCTTGTTGTGGTCCCTTTGACTCAACATCATCGTCAAACTCGTGTTGCCTGGGA---AACCACCCATCTTCGCTGGACTCGGCGGCAANTTTCGCTGGACTTGGCGGCAATGGACTACATTTTTGTTTACTGACGAGTCTCGTTTTAATGTGGATTTTGCAGATGGACGCGCTCGTGTTTGGAGACGACGAAATGAGCGGTTTCAT--CCCGAAAACGTCATATAACGTGACCGCTATGGTGGTGGTAGTGTCATGGTT-TGGGA--GGGGA----ATCAGTTTTTATGGGAAA-----A--CATGT--CTTGTCATAGTAAATGGAAATCTGAA-TTCACAGCGTTATT-GTGCAGAAATTGTGGTTCCTGTAGT------TGTGCCATTTTTGAACTAGGGTCAATTAA-GT-TACCATAT-T-TCA-ACAA-------GAT-AACGCTCGACCGCACACTGCGCGATACACCCAGGACGTTTTACGGCAGAACAATATCGACGTACTGGAATGGCCCGCAAG-------------TCACCAATTGAGCATGTGTGGGACATTCTTGGTCGACGTGTGAGAGAGCAACATAACGTCAACAATGTAGCCAATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAANCGACATAA--CGgatttc
gi|4 : ANCGACATAACGTCAACAATGTAGCCGATTTGAGTCGAGTGCTTC--------AGCAAG-AATGGAACCAA-ATCA--CAA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGACTG-T---GGTAG-CTGCTAtcaacaatgtagccgatttgagtcgagtgcttcagcaagaatggaaccaaatcacaatacacgagctccgaaacctcatcagaagcatgagacgtcgatgtttgactgtggtagctgcta
gi|5 : ggaaaacaacggtttgccaagacagattatttgttacgacgtcgagacgtaaccgcttcatgtctgcacccaaagtcgccaatgagttacatcgggcgtctggagtgaggatgagtgctcagagtgtgagaaacaggttacggactgctaatctacgtgctcggagacctcttgttgtggtccctttgactcaacatcatcgtcaaactcgtgttgcctgggaaaccacccatcttcgctggactcggcggcaantttcgctggacttggcggcaatggactacatttttgtttactgacgagtctcgttttaatgtggattttgcagatggacgcgctcgtgtttggagacgacgaaatgagcggtttcatcccgaaaacgtcatataacgtgaccgctatggtggtggtagtgtcatggtttgggaggggaatcagtttttatgggaaaacatgtcttgtcatagtaaatggaaatctgaattcacagcgttattgtgcagaaattgtggttcctgtagttgtgccatttttgaactagggtcaattaagttaccatatttcaacaagataacgctcgaccgcacactgcgcgatacacccaggacgttttacggcagaacaatatcgacgtactggaatggcccgcaagtcaccaattgagcatgtgtgggacattcttggtcgacgtgtgagagagcaacataacgtcaacaatgtagccaatttgagtcgagtgcttcagcaagaatggaTACTATACTGAACA-AAAAGAGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTCTGCATTATTTCAGAGGCTTTCTGATTTTATCTCTTTAACACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGCACCACATGAACGTCATGGGTTTGCGTTTTA--CAATTTTTGCTAAACAATTGGTCACGATTGATTGCACGCAATTTCAAAGCAAACATCCACAGGGATATCATTTCGAACACGCGTACACACAAAAAACGCTGAAAGCTTCCAGAAAATTCAAATGGGAAAACGTCCACGAATCTCTGAAAATGAACGTAACAGAGCTATCAGGATGCTTAATGCTGGATGTCATCAACA-GCATGTA----GCGCGACAATTTAATGTCCATCCCTCGACTATCAGTCGACTTTTGAGTCATTTTCAAGTAACAGGACAAGTCAGCGACCATCAACGTCATGGGCGTCCACGGAAAAGAACGGTTTGCCAAGACAGATTTATTGTTACGACCTCGAGACGTAACCGCTTCATGTCTGCACCTAAAGTCGCCAATGAGTTACATCGGGCATCTGGAGTGAGG
gi|6 : taTCTAAA-TTCGCAGCGTTGCT-GTGAAGAAAATGTTATTCCTGTAGA------TGTGCCGTTTTCAAAC-AGGGTT----AA-GT-TACCATAT-T-TTA-ACAG-------AA--AACGCTCGACAACACAC-----AATACA---------TTTCACGGCACACCAATGTCGATGTACTGGAATCGCTCGCAAGAGCACATGATTCATCACCAAATGAGCATGT-----------TTTGTCGACATTTGAGAG--CAACATTCCGTTAATAACGTTGTCGATTTGAGTTATGTGCTTC--------AGCAGA-AATTGAACGAA-ATCA--CAA-----TA--------------------TACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCGA--------T---G-TTTGGTTG-T---GGTAG-CTTCTAA-----TG----TAGGTCATACA-AAGTATTGAAGAAAGTGAACTTTCATACTTTACCCTTTC-TCT-TTTCTGTGACAT-TTTGTTT-TTGTATGAAAAATTGA-TTTAGAAATCATCATGGCAAGTTCTCATTATTTGT--TT-AAAGAAGACAT---TCAT-AA--A-CGGT------GAATACGAATTTCTTA---TATATGGT------AATT-TTGA-TCATATGATATGAAATATTACAAGT---TATACTTGTTTTTTATT
gi|7 : -AAAAAAGTTT-AGCAATTTCATTTG-AATG----------------CATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AG--AGAAAGCAATACATGAGTGATCAGCACAATATGTGCCACGTGAACGTCTTGGGTTGGtctaagta
gi|7 : cTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAGAAGCATGA-GACGTCAA--------T---G-TTTGGCTG-T---GGTAG-GTGCTTA-----GG----GAGGCCATACA-AAGTATCGAAGAACGTGGATTTTCATACCTTACCCATTCTTTTTTTTCTGTGACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TTAT-AA--A-TACT------GAATACAAATTTCTCA---CATACGGT------GATG-TTAA-TTATGCGATATTAAATAT------------AACT--TTTTTTGTTaaccaaatcacgatacacgagctccgaaacctcatcagaagcatgagacgtcaatgtttggctgtggtaggtgcttagggaggccatacaaagtatcgaagaacgtggattttcataccttacccattcttttttttctgtgacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacatttataaatactgaatacaaatttctcacatacggtgatgttaattatgcgatattaaatataactttttttgttaaata
gi|8 : caaaaaagtttagcaatttcatttgaatgcattattttagaggctttctgattttatatttttgatactctaacacgcagagaaagcaatacatgagtgatcagcacaatatgtgccacgtgaacgtcttgggtATACT-AACACAAAAAAGTTT-AGCATCTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATA-TTTTGATACTCTAACACGCAAG--AGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGGaaata
gi|8 : aaTGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CTACAT--------CAAAAGCATGA-GGCATCGA--------T---G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAAATGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctacatcaaaagcatgaggcatcgatgtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaaatgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac
gi|9 : aaatactaacacaaaaaagtttagcatcttcatttgaatgtaggtaattttgtttgcattattttagaggctttctgattttatattttgatactctaacacgcaagagaaagcaatacatgagtgatcagcacaatatgcgccacgtgaacgtcatgggtACTAAACA-AAA--AGTTT-AGCAATTTCATTTG-AATGTAGGTAATTTTGTTTGCATTATTTTAGAGGCTTTCTGATTTTATATTTTTGATACTCTAACACGC-AAGCAGAAAGCAATACATGAGTGATCAGCACAATATGCGCCACGTGAACGTCATGGGTTGG
gi|9 : TGGAACCAA-ATCA--CGA-----TA--------------------CACGA-------GCTCCGAAAC-CT-CAT--------CAAAAGCATGA-GGCATCGA------------G-TTTGGCTG-T---GGTAG-CTGCTAA-----TG----GAGGCCATATA-AAGTATTGAAGAACGTGGATTTCCATACCTTACCCTTTCTTTT-TTTCTGTAACAT-T---TTT-TCGTTTGAAAAATTGA-TTTAGAGATTATTATGGCATGTTTTCATT-TTTGT--TT-GATGGAGACAT---TCAT-AA--A-TACT------GAATACaaccaaatcacgatacacgagctccgaaacctcatcaaaagcatgaggcatcgagtttggctgtggtagctgctaatggaggccatataaagtattgaagaacgtggatttccataccttaccctttctttttttctgtaacattttttcgtttgaaaaattgatttagagattattatggcatgttttcatttttgtttgatggagacattcataaatactgaatac