lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 22 11 22222222222222222222 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 11 222222 11
lowQualScore : 77 5 2 2 5 22 4 4 5 77 2 0 55 5 11111111111111111111 5 1 0 9 2 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8 666 8 2 8 0 44 333333 11 6
lowQualScore : .. . . . . .. . . . .. . . .. . .................... . . . . . ......................................................................................................................................................................................................................................................................................................................................................... . ... . . . . .. ...... .. .
lowQualScore : 55 7 7 7 3 99 4 4 0 44 9 7 33 0 00000000000000000000 7 7 1 3 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 000 0 8 0 8 00 000000 00 0
consensus : CTTC-ACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTT-NAGGGTCGGGTC-AGTGAAA-------ATCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTT-------T--A--AGT----CACA--T-----GAA--ATAAA-G-----AT-----------G-AT---A-----CTC-TAAAC--TCTCTTATTTGTATAAC-GTAG------A-TAA---TTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-ACGCATATAATAAGGTATTAA----AAGT--AANTGTTTAGCT--AC--A--AAGT-TCACTAGATCN-------------------ACATCCTACAATNCCACT---GTATGTGATAAACAT-GTACTATGAAAATTTGGG----GGCCAGT-AATTTCA-TAGGG-T----------------CAGTAAA-TTCAG-G-C-AGTTC-ACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCGC
Reference ( gi|2 ) : CTTC-CTGA-AAACTCTGTGGTCCGAAAACCTAGGCCA-GT-G-GATTT-AAGGGTCGGGTC-TGTGAAA-------ATCA-A-------G-AAGTCTGATGGGCTTGTAGACGTTT-------T--A--AGT----CACA--T-----GAA--ATAAA-------AT-----------G-AT---A-----TTC-TAAAC--T-TCTTATTTGTATAAT-TTAA------ATTAA---TTTTACCATCAGA-ATAAAA---ATGAATCGGTAAAT-AC---TATA-TAAGGGATTAA----AAGT--AAGTGTTTAG----AC--A--AAATCTCACTAAATTA-------------------ACACCCCATAATGTGACT---GTGTGTGATAAACAT-GTACCATGAAAATTTGGG----AG--------------------T----------------CAGTAAA-TTCAG-A-C-AGTCC-ACTGGTCCTACTGGCCAA-CA------AGTTTT--GAAAGTTTCTGCT
gi|7 : CTTC-ATGA-AAAGTCAGTGGTCCAAAGACCGAGGCCA-GT-G-CATTT-TGAGGTCGGGCC-TGTGAAAATCAAAAATCA-A-------G-AAGTCTGATGGGCTTCTGGATTTTT-------T--ATCAGTCGCACACA--T-----AAA--ATCAATGT----AT-----------GTAA---A-----TTCTTAAAC--TCTCTTA-----ATAGC-GTA---------TA-----TTTACCGTCAGA-ATAAAA---ATAAATTG
gi|5 : agtCTTC-ATGA-AAACTCTGTGATCTGAAGACTGAGGCCA-GT-G-GATTT-TTAGATTGGGTA-AGTGAAA-------ATAA-A-------A-ATGACTGGTGGGCTTGTAAAC-TTT--------------GC----AACA--T-----TGA--ATAAA-------ATATTGGATGTA-A-AT---A-----CTC-TAAAT--G-CCTTATTTGTA-----------------CAA---TTTTACCATCAGA-ATAAAA---AAAAATT-GTCAATAAC---T-TA-TA-------------------AAGTGTTTAG----AC--a
gi|16 : aacagtCTTCACT-A-AAACTTGGTGGTCCGAAGACTGAGGCCA-AT-G-GATTT-AAGGGT
gi|17 : gtCTTC-ATGA-AAACTCGATGATCCAAAGACG-AGGCCA-GT-G-AATTT-AAGGG
gi|18 : gtCTTC-ACGA-AAACTCAGTGGTTTGAACACCGTGGCCA-GT-
gi|1 : aacagtTTC-ACGACAAACTCAGTGGTCCAACGACCAAGGCCAAGT-G-GATTTTAAGGGTCGGGTCATG-AAAA-------ATCATA-------G-AAGCCCGAT-GGCTTGTAGACTTTT-------TTAA--AGT-----ATATTT-----G-A--ATAAAAATTGAGAT-----------G-ATTCGA-----CCC-TGAAG--T-TTCTA---G-ATCAC-CTAGTGTGTTACTAACACTTTTATCATCATACCTAAAATATATGAATTAGTttatt
gi|10 : atgcaataatacaaataattaataataatgaaagtcagtcatcaattaatatgattcatactttcaaactcccttcctttactcaaaaaatgtgttgtcaatcaagttgatcacttcctaaggcatccacaacctcaatcatcactataaaaatatcattatatacattcgaagtatttcagcaataatgatttgcatcagatgattcaaataaccttttccaacttcaaccaagaaatatgaaaattttagatactttctctgtagttgtagtagctttctagatttcagtctt-AAACTCAGTGGTCTGAAGAC-TAGGCCA-GT-GCGGTTT-GAGGGTCGGGTC-AGTGAAA---------TA-A-------G-A-GTCTG-TGGGCTTGTAGACTTTT-------T--A--AGT----CACA--TTTATAGAATGTTGAG-------AT-----------GCAT---AGATACTTC-TAAACAGT-TAT--TTTGTATAATATTA
gi|12 : tgaatGTCCAAAGACA-AGGCCA-GT-G-GATTT-TAAGGTCGG-TC-AGTGAAA-------ACAA-G-------G-AAGCCCGATGGGCTTGT-GACTTTT-------TA-A--AGT----TAAT--T-----GAA--
gi|15 : agtagctttcctcaatcaggtcacaaaaaacagtTCC-AAAAGATGAGCCA-GTTG-GATTT-AAGG-CCG---C-AG-GAAA-------ATCA-A-------GGAAATTTGATGGGCTGGT--AC-TTT-------T--A--TGT----GACA--T-----GGA--ATAAATG-----TT-----------G-AT---G-----TT
gi|9 : tTTT-GAGG-TCGGGCC-AGTGAAA-------ATCA-AATTTCAAG-AAGTCCGATAGGCTTCTGGATTTTTTTTTTGGT--C--AGT----CACA--C------AC--ATAAA-------ATCAACGGATGTAG-AT---A-----CT--TAAAC--TCTCTTA---GTAC--C-GTAG------A--------TCTACCGTCAGA-ATAAAA---ATGAATTG--AAAT-
gi|4 : AAAT-ATGCATATAATAAGGTATTAAGACAAAGTCTAACTACTTAACTGTACTTA--ACATATTANNNNNNNN-------------------NNNNNNNNNNNNNNNNNT---GTATGTAATAAACTA-GTACTATGAAAATCTGGG----GGCCAGTAAATTTCATTAGGGGT----------------CAGTAAA-TTCAG-G-C-AGTTC-ACCGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGCg
gi|8 : taaA----AATT--AACTGTACAGTT--AT--A--AA----CATTAGATCT-------------------ACATCCTACAATGT-AC--------GTGATAAACAT----CTATGAAAATTTGGG----GGCCAGTCAATTTCAATAGGGAT----------------CAGTATA-TTCAG-G-C-AGTTC-ACTGGTCCTACTGG-CAG-CA------AGTCTT--GAAAGTTTaaagat
gi|6 : agtctcactAGT--AAGTGTTTTG----AC--ATTAAGTCTCACTAAATTATACTTAGAATAACAGTTAAACATCCTATA-TCCCACTCATGTATGTGATAAA-ATCGTACTATGAAAATTAGGG-------------------------------------------CACTAAAGTTCAA-AGC-AATTCAACTGGTACTACTGACCAGTCATGAGGTAGTTTT--GAAAATTtcacaaaga
gi|13 : aaaaatgaattggcaatctTATGTGATAAACAT-GTACTATGAAAATTTGGGGGCCAG--------------------TAAATTCCATTAGGGACCAGTAAA-TTCAG-G-C-ATTTT-ACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCggtttgtcgagacctgt
gi|14 : TGGG----GG-------------------------------------CAGTAAA-TTCAGAA-CAAGTCT-ACTGGTCCTCC--GCCAG-CA------AGTTGTAAAAAAGTTTtgaagactg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): AATAGCAATAAATACAAATAATTATTAAAATAAATAACATCAGTACACAATTAAATGAATTCATACTTTTACAACTCCTTCCATTATCAAAAATGTGTTGCAACAAGTTGATATCTCTAAGGCATCCCACACATCAATATCACTATAAAATATACTATATTAACATTGAAGGATTTCAGCAAATAATGATTTTGCACAATGATCAAATAACCTTTCAATTTCAACAAGAATATGAAAAATTTAACTGTCTCTGTAGTATGT
Unaligned ( gi|11 ): CATACATCAAATATTGAGAATGAATGTATTATAATCAGCCTTGACATTGAAAATAAATTTATCCCTGTTTGAATGTGTTCCATCTCACCTATAAGGGACATGTAAAATTGCAACCATGAACCTCTCT
Alignments
lowQualScore : 2222222 1111111 5555555555555555555555555555555555555555555555555555555555555 111 666666666666666666666666666 111 3333 1 2222 11 1 6666666666666666666666666666666 333333333 111111 222222 11 111111
lowQualScore : 4 4 22 4 4 4 1 4 1 1111111 5 6666666 5 0 7777777777777777777777777777777777777777777777777777777777777 000 6 6 8888 6 111111111111111111111111111 8 111 1 0 7777 3 3 1111 2 33 0 1 0000000000000000000000000000000 44 0 5 222222222 77 6 6 444444 333333 1 44 7777 6 999999 99
lowQualScore : . . .. . . . . . . ....... . ....... . . ............................................................. ... . . .... . ........................... . ... . . .... . . .... . .. . . ............................... .. . . ......... .. . . ...... ...... . .. .... . ...... ..
lowQualScore : 4 4 11 0 0 4 0 0 6 2222222 0 2222222 0 9 9999999999999999999999999999999999999999999999999999999999999 000 7 7 7777 7 666666666666666666666666666 0 777 0 8 5555 2 3 2222 5 88 8 2 0000000000000000000000000000000 00 8 8 000000000 77 7 7 000000 555555 0 88 0000 7 222222 22
consensus : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAATCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-AT-----GT--AT---AC-TC-TAAACTCTCT-TA-TT------TGTATAACGTA-A-TAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAATACGC-TATAATAAG-GTATTAA----AANT--AACTGTTTAGCT--AC--AAAAT-TCACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
Reference ( family-6033 ) : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAATCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATAAA------G-AT-----G---AT---AC-TC-TAAACTCTCT-TA-TT------TGTATAACGTAGA-TAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAATACGCATATAATAAG-GTATTAA----AAGT--AANTGTTTAGCT--AC--AAAGT-TCACT-AGA--------TCNACATCCTACAATNCCACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCGC
gi|1 : TTCACGACAAACTCAGTGGTCCAACGACCAAGGCCAAGT-G-GATTTTAAGGGTCGGGTCA-TGA------AAAATCATA-------G-AAGCCCGAT-GGCTTGTAGACTTTTTTA-----A--AGT-----ATA----TTTGAATAAAA-ATTGA------G-AT-----G---ATTCGAC-CC-TGAAGTTTCTAGA-TCACCTAGTGTGTTAC-TA-A-CACTTTTATCATCATACCTAAAATATATGAATTAGT
gi|10 : atgcaataatacaaataattaataataatgaaagtcagtcatcaattaatatgattcatactttcaaactcccttcctttactcaaaaaatgtgttgtcaatcaagttgatcacttcctaaggcatccacaacctcaatcatcactataaaaatatcattatatacattcgaagtatttcagcaataatgatttgcatcagatgattcaaataaccttttccaacttcaaccaagaaatatgaaaattttagatactttctctgtagttgtagtagctttctagatttcagtctt-AAACTCAGTGGTCTGAAGACT-AGGCCA-GT-GCGGTTTGA-GGGTCGGGTCAGTG-------AAA--TA-A-------G--AGTCTG-TGGGCTTGTAGACTTTTT-------A--AGT----CACA----TTTATA--GAATGTTGA------G-ATGCATAG---AT---ACTTC-TAAA--CAGT-TATTT------TGTATAA
gi|12 : tgaatTCACAA-AAAA-CAGTG-TCCAAAGAC-AAGGCCA-GT-G-GATTTTA-AGGTCGG-TCAGTG-------AAAACAA-G-------G-AAGCCCGATGGGCTTGT-GACTTTTTA------A--AGT----TAAT----T-------GAA-tatta
gi|13 : agtagctttcctcaatcaggTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AAATTCC-A-TT-AGGGACCAGTAAATTCAG-GC-ATTTTACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCG
gi|14 : AT-ATAATATGTAAAATATGCGGGGCCAGT-GA-TTTC-ACT--GGGG-GCAGTAAATTCAGAACAAGTCTACTGGTCCTCC--GCCAG-CA------AGTTGTAAAAAAGTTTTCGtgaagactg
gi|15 : tTCCAAAAGATGAG-CCA-GTTG-GATTTAA-GG-CCG---CAG-G-------AAAATCA-A-------GGAAATTTGATGGGCTGGTA---CTTTT-------A--TGT----GACA----T-------GGA-ATAAAT-----G-TT-----G---AT---tgacgactg
gi|16 : tCTTCACTA-AAACTTGGTGGTCCGAAGACTGAGGCCA-AT-G-GATTTAA-GGGTgtt
gi|17 : gtCTTCATGA-AAACTCGATGATCCAAAGA-CGAGGCCA-GT-G-AATTTAA-GGG
gi|18 : gtCTTCACGA-AAACTCAGTGGTTTGAACACCGTGGCCA-GT-
gi|2 : aacagtCTTCCTGA-AAACTCTGTGGTCCGAAAACCTAGGCCA-GT-G-GATTTAA-GGGTCGGGTCTGTG-------AAAATCA-A-------G-AAGTCTGATGGGCTTGTAGACGTTTT-------A--AGT----CACA----T-------GAA-ATAAA--------AT-----G---AT---AT-TC-TAAACT-TCT-TA-TT------TGTATAATTTAAATTAATTTTACCATCAGA-ATAAAA---ATGAATCGGTAAATAC---TAT-ATAAG-GGATTAA----AAGT--AAGTGTTTAG----AC--AAAATCTCACT-AAA--------TTAACACCCCATAATGTGACT---GTGTGTGATAAACAT-GTACCATG-AAAATTTG-G-----------------------GAG-TCAGTAAATTCAG-AC-AGTCCACTGGTCCTACTGGCCAA-CA------AGTTTT--GAAAGTTTCTGCttatt
gi|4 : AAATATGCATATAATAAG-GTATTAAGACAAAGTCTAACTACTTAACTGTACTTAACATATTANN-NNN--------NNNNNNNNNNNNNNNNNNNNT---GTATGTAATAAACTA-GTACTATG-AAAATCTG-GGGGCCAGT-AAATTTC-A-TTAGGGG-TCAGTAAATTCAG-GC-AGTTCACCGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGCt
gi|5 : taaCTTCATGA-AAACTCTGTGATCTGAAGACTGAGGCCA-GT-G-GATTTTT-AGATTGGGTAAGTG-------AAAATAA-A-------A-ATGACTGGTGGGCTTGTAAACTTT-------------GC----AACA----T-------TGA-ATAAAATATTGG-AT-----GTAAAT---AC-TC-TAAATGC-CT-TA-TT------TGT---------A-CAATTTTACCATCAGA-ATAAAA---AAAAATT-GTCAATA-ACTTATAAaaagat
gi|6 : aacagtAAAA---ATGAATTGGCAA-------TCTAGTAAGTGTTTTGA----CATT--AA--GTCTCACT--A----AATT-ATACTTAGAATAACAGTTAAACATCCTATA-TCCCACTCATGTATGTGATAAA-ATCGTACTATG-AAAATTAG-GGCACTA---AA-GTTC-A-A--AG----C----AATTCA----------ACTGGTACTACTGACCAGTCATGAGGTAGTTTT--GAAAATTagtgtttagac
gi|7 : CTTCATGA-AAAGTCAGTGGTCCAAAGACCGAGGCCA-GT-G-CATTTTG-AGGTCGGGCCTGTGAAAATCAAAAATCA-A-------G-AAGTCTGATGGGCTTCTGGATTTTTT-------ATCAGTCGCACACA----T-------AAA-ATCAAT-----GTAT-----GT--AA---AT-TCTTAAACTCTCT-TA------------ATAGCGT--A-TA--TTTACCGTCAGA-ATAAAA---ATAAATTGggtttgtcgagacctgt
gi|8 : agtA----AATT--AACTGTACAGTT--AT--AAA----CATT-AGA--------TCTACATCCTACAAT---------GTACGTGATAAACAT----CTATG-AAAATTTG-GGGGCCAGTCAA-TTTCAA-T--AGGGATCAGTATATTCAG-GC-AGTTCACTGGTCCTACTGG-CAG-CA------AGTCTT--GAAAGTTTTCACa
gi|9 : agtctcactTTTGA-GG-TCGGGCCAGTG-------AAAATCA-AATTTCAAG-AAGTCCGATAGGCTTCTGGATTTTTTTTTTGGTC--AGT----CACACACAT-------AAA-ATCAACG----G-AT-----GTAGAT---AC-T--TAAACTCTCT-TA----------GTAC--CGTAGA-T----CTACCGTCAGA-ATAAAA---ATGAATTG--AAATaaaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AATAGCAATAAATACAAATAATTATTAAAATAAATAACATCAGTACACAATTAAATGAATTCATACTTTTACAACTCCTTCCATTATCAAAAATGTGTTGCAACAAGTTGATATCTCTAAGGCATCCCACACATCAATATCACTATAAAATATACTATATTAACATTGAAGGATTTCAGCAAATAATGATTTTGCACAATGATCAAATAACCTTTCAATTTCAACAAGAATATGAAAAATTTAACTGTCTCTGTAGTATGT
Unaligned ( gi|11 ): CATACATCAAATATTGAGAATGAATGTATTATAATCAGCCTTGACATTGAAAATAAATTTATCCCTGTTTGAATGTGTTCCATCTCACCTATAAGGGACATGTAAAATTGCAACCATGAACCTCTCT
Alignments
lowQualScore : 1111111 1111111 333333333333333333333333333333333 444444444444444444444444444 55555555555555555555555555 111 3333 1 2222222 55555555555555555555555555555555 333333333 111111 222222 11 111111
lowQualScore : 4 4 22 4 4 4 1 4 1 6666666 5 5 6666666 5 0 888888888888888888888888888888888 5 1 666666666666666666666666666 6 8888 6 33333333333333333333333333 0 8 111 1 0 8888 3 3 0 9999999 8 1 66666666666666666666666666666666 1 5 222222222 77 6 6 444444 333333 1 44 7777 6 999999 99
lowQualScore : . . .. . . . . . . ....... . . ....... . . ................................. . . ........................... . .... . .......................... . . ... . . .... . . . ....... . . ................................ . . ......... .. . . ...... ...... . .. .... . ...... ..
lowQualScore : 4 4 11 0 0 4 0 0 6 2222222 0 0 2222222 0 9 000000000000000000000000000000000 0 0 888888888888888888888888888 7 7777 7 88888888888888888888888888 8 0 777 0 8 0000 2 3 8 8888888 8 2 00000000000000000000000000000000 0 8 000000000 77 7 7 000000 555555 0 88 0000 7 222222 22
consensus : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--CAATTTTACCGTCAGAA-TAAAA---ATGAATTGGTAAATA--C-TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
Reference ( family-6033 ) : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--TAATTTTACCGTCAGAA-TAAAA---ATGAATTGGTAAATACGC-TATAATAAG-GTATTAAAAN------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
gi|1 : TTCACGACAAACTCAGTGGTCCAACGACCAAGGCCAAGT-G-GATTTTAAGGGTCGGGTCA-TG-------AAAAATCATA-------G-AAGCCCGATGG-CTTGTAGACTTTTTTA-----A--AGT-----ATA----TTTGAATAAAA-ATTGA------G-ATG---A--TTCGA-----CCC-TGAAGTTTCTAGA-TCACCTAGTGTGTTAC-TAA--CACTTTTATCATCATACCTAAAATATATGAATTAGT
gi|10 : atgcaataatacaaataattaataataatgaaagtcagtcatcaattaatatgattcatactttcaaactcccttcctttactcaaaaaatgtgttgtcaatcaagttgatcacttcctaaggcatccacaacctcaatcatcactataaaaatatcattatatacattcgaagtatttcagcaataatgatttgcatcagatgattcaaataaccttttccaacttcaaccaagaaatatgaaaattttagatactttctctgtagttgtagtagctttctagatttcagtctt-AAACTCAGTGGTCTGAAGACT-AGGCCA-GT-GCGGTTTGA-GGGTCGGGTCAGTG-------AAA---TA-A-------G--AGTCTG-TGGGCTTGTAGACTTTTT-------A--AGT----CACA----TTTATA--GAATGTTGA------G-ATGC--A--T---AGATACTTC-TAAA--CAGT-TATTT------TGTATAA
gi|12 : tgaatTCACAA-AAAA-CAGTG-TCCAAAGAC-AAGGCCA-GT-G-GATTTTA-AGGTCGG-TCAGTG-------AAAA-CAA-G-------G-AAGCCCGATGGGCTTGT-GACTTTTTA------A--AGT----TAAT----T-------GAA-tatta
gi|13 : agtagctttcctcaatcaggTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AAATTCC-A-TT-AGGGACCAGTAAATTCAG-GC-ATTTTACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCG
gi|14 : AT-ATAATATGTAAAATATGCGGGGCCAGT-GA-TTTC-ACT--GGGG-GCAGTAAATTCAGAACAAGTCTACTGGTCCTCC--GCCAG-CA------AGTTGTAAAAAAGTTTTCGtgaagactg
gi|15 : tTCCAAAAGATGAG-CCA-GTTG-GATTTAA-GG-CCG---CAG-G-------AAAA-TCA-A-------GGAAATTTGATGGGCTGGTA---CTTTT-------A--TGT----GACA----T-------GGA-ATAAATGTT--G-ATGT--tgacgactg
gi|16 : tCTTCACTA-AAACTTGGTGGTCCGAAGACTGAGGCCA-AT-G-GATTTAA-GGGTt
gi|17 : gtCTTCATGA-AAACTCGATGATCCAAAGA-CGAGGCCA-GT-G-AATTTAA-GGG
gi|18 : gtCTTCACGA-AAACTCAGTGGTTTGAACACCGTGGCCA-GT-
gi|2 : aacagtCTTCCTGA-AAACTCTGTGGTCCGAAAACCTAGGCCA-GT-G-GATTTAA-GGGTCGGGTCTGTG-------AAAA-TCA-A-------G-AAGTCTGATGGGCTTGTAGACGTTTT-------A--AGT----CACA----T-------GAA-ATAAA--------ATG---A--T---A-----TTC-TAAACT-TCT-TA-TT------TGTATAATTTAAATTAATTTTACCATCAGAA-TAAAA---ATGAATCGGTAAATA--C-TAT-ATAAG-GGATTAAAAG------TAAGTGTTTAG----AC--AAAATCT-CACT-AAA--------TTAACACCCCATAATGTGACT---GTGTGTGATAAACAT-GTACCATG-AAAATTTG-G-----------------------GAG-TCAGTAAATTCAG-AC-AGTCCACTGGTCCTACTGGCCAA-CA------AGTTTT--GAAAGTTTCTGCttatt
gi|4 : AAATATGCATATAATAAG-GTATTAAGACAAAGTCTAACTACTTAACTGTACTTAACATAT-TANN-NNN--------NNNNNNNNNNNNNNNNNNNNT---GTATGTAATAAACTA-GTACTATG-AAAATCTG-GGGGCCAGT-AAATTTC-A-TTAGGGG-TCAGTAAATTCAG-GC-AGTTCACCGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGCt
gi|5 : taaCTTCATGA-AAACTCTGTGATCTGAAGACTGAGGCCA-GT-G-GATTTTT-AGATTGGGTAAGTG-------AAAA-TAA-A-------A-ATGACTGGTGGGCTTGTAAACTTT-------------GC----AACA----T-------TGA-ATAAAATATTGG-ATGTAAA--T---A-----CTC-TAAATGC-CT-TA-TT------TGT--------A--CAATTTTACCATCAGAA-TAAAA---AAAAATT-GTCAATAACT-TATAAaaagat
gi|6 : aacagtAAAA---ATGAATTGGCAA-------TCTAGTAAGTGTTTTGACAT------TAA--GTCTCACT--A-----AAT-TATACTTAGAATAACAGTTAAACATCCTATA-TCCCACTCATGTATGTGATAAA-ATCGTACTATG-AAAATTAG-GGCACTA---AA-GTTC-A-A--AG----C----AATTCA----------ACTGGTACTACTGACCAGTCATGAGGTAGTTTT--GAAAATTagtgtttagac
gi|7 : CTTCATGA-AAAGTCAGTGGTCCAAAGACCGAGGCCA-GT-G-CATTTTG-AGGTCGGGCCTGTGAAAATCAAAAA-TCA-A-------G-AAGTCTGATGGGCTTCTGGATTTTTT-------ATCAGTCGCACACA----T-------AAA-ATCAAT-----GTATGT--A--A---A-----TTCTTAAACTCTCT-TA------------ATAGCGT-A--TA--TTTACCGTCAGAA-TAAAA---ATAAATTGggtttgtcgagacctgt
gi|8 : agtAAAT------TAACTGTACAGTT--AT--AAA-----CATT-AGA--------TCTACATCCTACAAT---------GTACGTGATAAACAT----CTATG-AAAATTTG-GGGGCCAGTCAA-TTTCAA-T--AGGGATCAGTATATTCAG-GC-AGTTCACTGGTCCTACTGG-CAG-CA------AGTCTT--GAAAGTTTTCACa
gi|9 : agtctcactTTTGA-GG-TCGGGCCAGTG-------AAAA-TCA-AATTTCAAG-AAGTCCGATAGGCTTCTGGATTTTTTTTTTGGTC--AGT----CACACACAT-------AAA-ATCAACG----G-ATGT--AGAT---A-----CT--TAAACTCTCT-TA----------GTAC--CGTAG----ATCT-ACCGTCAGAA-TAAAA---ATGAATTG--AAATaaaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AATAGCAATAAATACAAATAATTATTAAAATAAATAACATCAGTACACAATTAAATGAATTCATACTTTTACAACTCCTTCCATTATCAAAAATGTGTTGCAACAAGTTGATATCTCTAAGGCATCCCACACATCAATATCACTATAAAATATACTATATTAACATTGAAGGATTTCAGCAAATAATGATTTTGCACAATGATCAAATAACCTTTCAATTTCAACAAGAATATGAAAAATTTAACTGTCTCTGTAGTATGT
Unaligned ( gi|11 ): CATACATCAAATATTGAGAATGAATGTATTATAATCAGCCTTGACATTGAAAATAAATTTATCCCTGTTTGAATGTGTTCCATCTCACCTATAAGGGACATGTAAAATTGCAACCATGAACCTCTCT
Alignments
lowQualScore : 1111111 1111111 333333333333333333333333333333333 444444444444444444444444444 55555555555555555555555555 111 2222222222 1 2222222 55555555555555555555555555555555 333333333 111111 222222 11 111111
lowQualScore : 4 4 22 4 4 4 1 4 1 6666666 5 5 6666666 5 0 888888888888888888888888888888888 5 1 666666666666666666666666666 6 8888 6 33333333333333333333333333 0 8 111 1 0 9999999999 0 1 0 9999999 8 1 66666666666666666666666666666666 1 5 222222222 77 6 6 444444 333333 1 44 7777 6 999999 99
lowQualScore : . . .. . . . . . . ....... . . ....... . . ................................. . . ........................... . .... . .......................... . . ... . . .......... . . . ....... . . ................................ . . ......... .. . . ...... ...... . .. .... . ...... ..
lowQualScore : 4 4 11 0 0 4 0 0 6 2222222 0 0 2222222 0 9 000000000000000000000000000000000 0 0 888888888888888888888888888 7 7777 7 44444444444444444444444444 8 0 777 0 8 5555555555 0 2 8 5555555 8 2 00000000000000000000000000000000 0 8 000000000 77 7 7 000000 555555 0 88 0000 7 222222 22
consensus : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--CAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
Reference ( family-6033 ) : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--CAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
gi|1 : TTCACGACAAACTCAGTGGTCCAACGACCAAGGCCAAGT-G-GATTTTAAGGGTCGGGTCA-TG-------AAAAATCATA-------G-AAGCCCGATGG-CTTGTAGACTTTTTTA-----A--AGT-----ATA----TTTGAATAAAA-ATTGA------G-ATG---A--TTCGA-----CCC-TGAAGTTTCTAGA-TCACCTAGTGTGTTAC-TAA--CACTTTTATCATCATACCTAAAATATATGAATTAGT
gi|10 : atgcaataatacaaataattaataataatgaaagtcagtcatcaattaatatgattcatactttcaaactcccttcctttactcaaaaaatgtgttgtcaatcaagttgatcacttcctaaggcatccacaacctcaatcatcactataaaaatatcattatatacattcgaagtatttcagcaataatgatttgcatcagatgattcaaataaccttttccaacttcaaccaagaaatatgaaaattttagatactttctctgtagttgtagtagctttctagatttcagtctt-AAACTCAGTGGTCTGAAGACT-AGGCCA-GT-GCGGTTTGA-GGGTCGGGTCAGTG-------AAA---TA-A-------G--AGTCTG-TGGGCTTGTAGACTTTTT-------A--AGT----CACA----TTTATA--GAATGTTGA------G-ATGC--A--T---AGATACTTC-TAAA--CAGT-TATTT------TGTATAA
gi|12 : tgaatTCACAA-AAAA-CAGTG-TCCAAAGAC-AAGGCCA-GT-G-GATTTTA-AGGTCGG-TCAGTG-------AAAA-CAA-G-------G-AAGCCCGATGGGCTTGT-GACTTTTTA------A--AGT----TAAT----T-------GAA-tatta
gi|13 : agtagctttcctcaatcaggTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AAATTCC-A-TT-AGGGACCAGTAAATTCAG-GC-ATTTTACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCG
gi|14 : AT-ATAATATGTAAAATATGCGGGGCCAGT-GA-TTTC-ACT--GGGG-GCAGTAAATTCAGAACAAGTCTACTGGTCCTCC--GCCAG-CA------AGTTGTAAAAAAGTTTTCGtgaagactg
gi|15 : tTCCAAAAGATGAG-CCA-GTTG-GATTTAA-GG-CCG---CAG-G-------AAAA-TCA-A-------GGAAATTTGATGGGCTGGTA---CTTTT-------A--TGT----GACA----T-------GGA-ATAAATGTT--G-ATGT--tgacgactg
gi|16 : tCTTCACTA-AAACTTGGTGGTCCGAAGACTGAGGCCA-AT-G-GATTTAA-GGGTt
gi|17 : gtCTTCATGA-AAACTCGATGATCCAAAGA-CGAGGCCA-GT-G-AATTTAA-GGG
gi|18 : gtCTTCACGA-AAACTCAGTGGTTTGAACACCGTGGCCA-GT-
gi|2 : aacagtCTTCCTGA-AAACTCTGTGGTCCGAAAACCTAGGCCA-GT-G-GATTTAA-GGGTCGGGTCTGTG-------AAAA-TCA-A-------G-AAGTCTGATGGGCTTGTAGACGTTTT-------A--AGT----CACA----T-------GAA-ATAAA--------ATG---A--T---A-----TTC-TAAACT-TCT-TA-TT------TGTATAATTTAAATTAATTTTACCATCAGA-ATAAAA---ATGAATCGGTAAAT-AC---TAT-ATAAG-GGATTAAAAG------TAAGTGTTTAG----AC--AAAATCT-CACT-AAA--------TTAACACCCCATAATGTGACT---GTGTGTGATAAACAT-GTACCATG-AAAATTTG-G-----------------------GAG-TCAGTAAATTCAG-AC-AGTCCACTGGTCCTACTGGCCAA-CA------AGTTTT--GAAAGTTTCTGCttatt
gi|4 : AAAT-ATGCATATAATAAG-GTATTAAGACAAAGTCTAACTACTTAACTGTACTTAACATAT-TANN-NNN--------NNNNNNNNNNNNNNNNNNNNT---GTATGTAATAAACTA-GTACTATG-AAAATCTG-GGGGCCAGT-AAATTTC-A-TTAGGGG-TCAGTAAATTCAG-GC-AGTTCACCGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGCt
gi|5 : taaCTTCATGA-AAACTCTGTGATCTGAAGACTGAGGCCA-GT-G-GATTTTT-AGATTGGGTAAGTG-------AAAA-TAA-A-------A-ATGACTGGTGGGCTTGTAAACTTT-------------GC----AACA----T-------TGA-ATAAAATATTGG-ATGTAAA--T---A-----CTC-TAAATGC-CT-TA-TT------TGT--------A--CAATTTTACCATCAGA-ATAAAA---AAAAATT-GTCAATAAC---T-T-ATAAA-GTGTTaaagat
gi|6 : aacagtAAAA---ATGAATTGGCAA--------TCTAGTAAGTGTTTTGACAT------TAA--GTCTCACT--A-----AAT-TATACTTAGAATAACAGTTAAACATCCTATA-TCCCACTCATGTATGTGATAAA-ATCGTACTATG-AAAATTAG-GGCACTA---AA-GTTC-A-A--AG----C----AATTCA----------ACTGGTACTACTGACCAGTCATGAGGTAGTTTT--GAAAATTtagac
gi|7 : CTTCATGA-AAAGTCAGTGGTCCAAAGACCGAGGCCA-GT-G-CATTTTG-AGGTCGGGCCTGTGAAAATCAAAAA-TCA-A-------G-AAGTCTGATGGGCTTCTGGATTTTTT-------ATCAGTCGCACACA----T-------AAA-ATCAAT-----GTATGT--A--A---A-----TTCTTAAACTCTCT-TA------------ATAGCGT-A--TA--TTTACCGTCAGA-ATAAAA---ATAAATTGggtttgtcgagacctgt
gi|8 : agtAAAT------TAACTGTACAGTT--AT--AAA-----CATT-AGA--------TCTACATCCTACAAT---------GTACGTGATAAACAT----CTATG-AAAATTTG-GGGGCCAGTCAA-TTTCAA-T--AGGGATCAGTATATTCAG-GC-AGTTCACTGGTCCTACTGG-CAG-CA------AGTCTT--GAAAGTTTTCACa
gi|9 : agtctcactTTTGA-GG-TCGGGCCAGTG-------AAAA-TCA-AATTTCAAG-AAGTCCGATAGGCTTCTGGATTTTTTTTTTGGTC--AGT----CACACACAT-------AAA-ATCAACG----G-ATGT--AGAT---A-----CT--TAAACTCTCT-TA----------GTAC--CGTAG----ATCT-ACCGTCAGA-ATAAAA---ATGAATTG--AAAT-aaaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AATAGCAATAAATACAAATAATTATTAAAATAAATAACATCAGTACACAATTAAATGAATTCATACTTTTACAACTCCTTCCATTATCAAAAATGTGTTGCAACAAGTTGATATCTCTAAGGCATCCCACACATCAATATCACTATAAAATATACTATATTAACATTGAAGGATTTCAGCAAATAATGATTTTGCACAATGATCAAATAACCTTTCAATTTCAACAAGAATATGAAAAATTTAACTGTCTCTGTAGTATGT
Unaligned ( gi|11 ): CATACATCAAATATTGAGAATGAATGTATTATAATCAGCCTTGACATTGAAAATAAATTTATCCCTGTTTGAATGTGTTCCATCTCACCTATAAGGGACATGTAAAATTGCAACCATGAACCTCTCT
Alignments
lowQualScore : 1111111 1111111 333333333333333333333333333333333 444444444444444444444444444 55555555555555555555555555 111 2222222222 1 2222222 55555555555555555555555555555555 333333333 111111 222222 11 111111
lowQualScore : 4 4 22 4 4 4 1 4 1 6666666 5 5 6666666 5 0 888888888888888888888888888888888 5 1 666666666666666666666666666 6 8888 6 33333333333333333333333333 0 8 111 1 0 9999999999 0 1 0 9999999 8 1 66666666666666666666666666666666 1 5 222222222 77 6 6 444444 333333 1 44 7777 6 999999 99
lowQualScore : . . .. . . . . . . ....... . . ....... . . ................................. . . ........................... . .... . .......................... . . ... . . .......... . . . ....... . . ................................ . . ......... .. . . ...... ...... . .. .... . ...... ..
lowQualScore : 4 4 11 0 0 4 0 0 6 2222222 0 0 2222222 0 9 000000000000000000000000000000000 0 0 888888888888888888888888888 7 7777 7 44444444444444444444444444 8 0 777 0 8 5555555555 0 2 8 5555555 8 2 00000000000000000000000000000000 0 8 000000000 77 7 7 000000 555555 0 88 0000 7 222222 22
consensus : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--CAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
Reference ( family-6033 ) : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--CAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
gi|1 : TTCACGACAAACTCAGTGGTCCAACGACCAAGGCCAAGT-G-GATTTTAAGGGTCGGGTCA-TG-------AAAAATCATA-------G-AAGCCCGATGG-CTTGTAGACTTTTTTA-----A--AGT-----ATA----TTTGAATAAAA-ATTGA------G-ATG---A--TTCGA-----CCC-TGAAGTTTCTAGA-TCACCTAGTGTGTTAC-TAA--CACTTTTATCATCATACCTAAAATATATGAATTAGT
gi|10 : atgcaataatacaaataattaataataatgaaagtcagtcatcaattaatatgattcatactttcaaactcccttcctttactcaaaaaatgtgttgtcaatcaagttgatcacttcctaaggcatccacaacctcaatcatcactataaaaatatcattatatacattcgaagtatttcagcaataatgatttgcatcagatgattcaaataaccttttccaacttcaaccaagaaatatgaaaattttagatactttctctgtagttgtagtagctttctagatttcagtctt-AAACTCAGTGGTCTGAAGACT-AGGCCA-GT-GCGGTTTGA-GGGTCGGGTCAGTG-------AAA---TA-A-------G--AGTCTG-TGGGCTTGTAGACTTTTT-------A--AGT----CACA----TTTATA--GAATGTTGA------G-ATGC--A--T---AGATACTTC-TAAA--CAGT-TATTT------TGTATAA
gi|12 : tgaatTCACAA-AAAA-CAGTG-TCCAAAGAC-AAGGCCA-GT-G-GATTTTA-AGGTCGG-TCAGTG-------AAAA-CAA-G-------G-AAGCCCGATGGGCTTGT-GACTTTTTA------A--AGT----TAAT----T-------GAA-tatta
gi|13 : agtagctttcctcaatcaggTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AAATTCC-A-TT-AGGGACCAGTAAATTCAG-GC-ATTTTACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCG
gi|14 : AT-ATAATATGTAAAATATGCGGGGCCAGT-GA-TTTC-ACT--GGGG-GCAGTAAATTCAGAACAAGTCTACTGGTCCTCC--GCCAG-CA------AGTTGTAAAAAAGTTTTCGtgaagactg
gi|15 : tTCCAAAAGATGAG-CCA-GTTG-GATTTAA-GG-CCG---CAG-G-------AAAA-TCA-A-------GGAAATTTGATGGGCTGGTA---CTTTT-------A--TGT----GACA----T-------GGA-ATAAATGTT--G-ATGT--tgacgactg
gi|16 : tCTTCACTA-AAACTTGGTGGTCCGAAGACTGAGGCCA-AT-G-GATTTAA-GGGTt
gi|17 : gtCTTCATGA-AAACTCGATGATCCAAAGA-CGAGGCCA-GT-G-AATTTAA-GGG
gi|18 : gtCTTCACGA-AAACTCAGTGGTTTGAACACCGTGGCCA-GT-
gi|2 : aacagtCTTCCTGA-AAACTCTGTGGTCCGAAAACCTAGGCCA-GT-G-GATTTAA-GGGTCGGGTCTGTG-------AAAA-TCA-A-------G-AAGTCTGATGGGCTTGTAGACGTTTT-------A--AGT----CACA----T-------GAA-ATAAA--------ATG---A--T---A-----TTC-TAAACT-TCT-TA-TT------TGTATAATTTAAATTAATTTTACCATCAGA-ATAAAA---ATGAATCGGTAAAT-AC---TAT-ATAAG-GGATTAAAAG------TAAGTGTTTAG----AC--AAAATCT-CACT-AAA--------TTAACACCCCATAATGTGACT---GTGTGTGATAAACAT-GTACCATG-AAAATTTG-G-----------------------GAG-TCAGTAAATTCAG-AC-AGTCCACTGGTCCTACTGGCCAA-CA------AGTTTT--GAAAGTTTCTGCttatt
gi|4 : AAAT-ATGCATATAATAAG-GTATTAAGACAAAGTCTAACTACTTAACTGTACTTAACATAT-TANN-NNN--------NNNNNNNNNNNNNNNNNNNNT---GTATGTAATAAACTA-GTACTATG-AAAATCTG-GGGGCCAGT-AAATTTC-A-TTAGGGG-TCAGTAAATTCAG-GC-AGTTCACCGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGCt
gi|5 : taaCTTCATGA-AAACTCTGTGATCTGAAGACTGAGGCCA-GT-G-GATTTTT-AGATTGGGTAAGTG-------AAAA-TAA-A-------A-ATGACTGGTGGGCTTGTAAACTTT-------------GC----AACA----T-------TGA-ATAAAATATTGG-ATGTAAA--T---A-----CTC-TAAATGC-CT-TA-TT------TGT--------A--CAATTTTACCATCAGA-ATAAAA---AAAAATT-GTCAATAAC---T-T-ATAAA-GTGTTaaagat
gi|6 : aacagtAAAA---ATGAATTGGCAA--------TCTAGTAAGTGTTTTGACAT------TAA--GTCTCACT--A-----AAT-TATACTTAGAATAACAGTTAAACATCCTATA-TCCCACTCATGTATGTGATAAA-ATCGTACTATG-AAAATTAG-GGCACTA---AA-GTTC-A-A--AG----C----AATTCA----------ACTGGTACTACTGACCAGTCATGAGGTAGTTTT--GAAAATTtagac
gi|7 : CTTCATGA-AAAGTCAGTGGTCCAAAGACCGAGGCCA-GT-G-CATTTTG-AGGTCGGGCCTGTGAAAATCAAAAA-TCA-A-------G-AAGTCTGATGGGCTTCTGGATTTTTT-------ATCAGTCGCACACA----T-------AAA-ATCAAT-----GTATGT--A--A---A-----TTCTTAAACTCTCT-TA------------ATAGCGT-A--TA--TTTACCGTCAGA-ATAAAA---ATAAATTGggtttgtcgagacctgt
gi|8 : agtAAAT------TAACTGTACAGTT--AT--AAA-----CATT-AGA--------TCTACATCCTACAAT---------GTACGTGATAAACAT----CTATG-AAAATTTG-GGGGCCAGTCAA-TTTCAA-T--AGGGATCAGTATATTCAG-GC-AGTTCACTGGTCCTACTGG-CAG-CA------AGTCTT--GAAAGTTTTCACa
gi|9 : agtctcactTTTGA-GG-TCGGGCCAGTG-------AAAA-TCA-AATTTCAAG-AAGTCCGATAGGCTTCTGGATTTTTTTTTTGGTC--AGT----CACACACAT-------AAA-ATCAACG----G-ATGT--AGAT---A-----CT--TAAACTCTCT-TA----------GTAC--CGTAG----ATCT-ACCGTCAGA-ATAAAA---ATGAATTG--AAAT-aaaga
blockSeqs : . A TG . T C G . G AAAATCA . . ATTTCAA G TTTTGGTCAGTCACACACAT T T ATATTGGATGTAAATA T CTCT . TTTGTATAATTTAAATTAA . . G ATGCATATA T A CAAAGTC C T CTAAATTATACTTAGAATAACAGT N N CCCACTCAT CG T C GTAAA ATTA G AT AACA T TGAGGT AA
blockSeqs : . A TG . . . T . G . . . . . ATCAGTCGCACACAT . A GATGCATAGATAC . CTCT . ATAGCGTATA . . G AACTT . G T C C CTGTACTTAACATATTANNNNN A A NNNNNT A . . GTCAA ACT A G AC . . .
blockSeqs : . G CG . . . A . G . . . . . AAGTCACATTTATA . A CGGATGTAGATA . CTT . GTACCGTAGA . . G TCTA . T T . A TTATAAACATTAGA C . . G . . GTGA AAT G T GC . . .
blockSeqs : . G CG . . . A . G . . . . . AAAGTTAATT . A TGTATGTAAA . TGC . TTTGTACAA . . G G . . AA AA G T GC . . .
blockSeqs : . A CT . . . A . G . . . . . ATGTGACAT . C ATGATA . CA . . . . . . . . . . . . . .
blockSeqs : . T TG . . . A . A . . . . . AAGTCACAT . C
blockSeqs : . T CG . . . T . G . . . . . GCAACAT .
blockSeqs : . A T . . . T . .
blockSeqs : A . . G . .
blockSeqCons : AAGTCACAT************************ TGGATGTAAATA*************** TGTATAA******************* *** T*
originalCons : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----T-------GAA-ATNAA------G-ATGT--A--T---A-----CTC-TAAACTCTCT-TA-TT------TGTATAACGTAA--CAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
finalCons : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAA-TCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTTAAGTCACAT------------------------GAA-ATNAATGGATGTAAATA---------------CTC-TAAACTCTCT-TATGTATAA-------------------TTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGGT-CAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AATAGCAATAAATACAAATAATTATTAAAATAAATAACATCAGTACACAATTAAATGAATTCATACTTTTACAACTCCTTCCATTATCAAAAATGTGTTGCAACAAGTTGATATCTCTAAGGCATCCCACACATCAATATCACTATAAAATATACTATATTAACATTGAAGGATTTCAGCAAATAATGATTTTGCACAATGATCAAATAACCTTTCAATTTCAACAAGAATATGAAAAATTTAACTGTCTCTGTAGTATGT
Unaligned ( gi|11 ): CATACATCAAATATTGAGAATGAATGTATTATAATCAGCCTTGACATTGAAAATAAATTTATCCCTGTTTGAATGTGTTCCATCTCACCTATAAGGGACATGTAAAATTGCAACCATGAACCTCTCT
Alignments
lowQualScore : 2222222 1111111 3333333333 11111 1111 2222222222 888888888888888888888888888888888888 111 2222222222 1 2222222 55555555555555555555555555555555 333333333 111111 222222 11 111111
lowQualScore : 4 4 22 4 4 4 1 4 1 1111111 5 6666666 5 0 2222222222 55555 7777 0 5 1 9999999999 77 99 666 999 444444444444444444444444444444444444 5 8 111 1 0 9999999999 0 1 0 9999999 8 1 66666666666666666666666666666666 1 5 222222222 77 6 6 444444 333333 1 44 7777 6 999999 99
lowQualScore : . . .. . . . . . . ....... . ....... . . .......... ..... .... . . . .......... .. .. ... ... .................................... . . ... . . .......... . . . ....... . . ................................ . . ......... .. . . ...... ...... . .. .... . ...... ..
lowQualScore : 4 4 11 0 0 4 0 0 6 2222222 0 2222222 0 9 0000000000 11111 5555 2 0 0 4444444444 99 22 888 333 222222222222222222222222222222222222 7 0 777 0 8 5555555555 0 2 8 5555555 8 2 00000000000000000000000000000000 0 8 000000000 77 7 7 000000 555555 0 88 0000 7 222222 22
consensus : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAATCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----TGAA-ATAAA----TG----GATG--TAAAT--AC-TCTAAAC-TCTCT-----------TA-T--TGT-----A----------TAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
Reference ( family-6033 ) : CTTCACGA-AAACTCGGTGGTCCGAAGACCGAGGCCA-GT-G-GATTTNA-GGGTCGGGTCAGTG-------AAAATCA-A-------G-AAGTCCGATGGGCTTGTAGACTTTTT-------A--AGT----CACA----TGAA-ATNAA----TG----GATG--TAAAT--AC-TCTAAAC-TCTCT-----------TA----TGT-----A----------TAATTTTACCGTCAGA-ATAAAA---ATGAATTGGTAAAT-AC---TATAATAAG-GTATTAAAAT------TAACTGTTTAGCT--AC--AAAAT-T-CACT-AGA--------TNAACATCCTATAATNCGACT---GTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AA-TTTC-A-T--AGGG-TCAGTAAATTCAG-GC-AGTTCACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGC
gi|1 : TTCACGACAAACTCAGTGGTCCAACGACCAAGGCCAAGT-G-GATTTTAAGGGTCGGGTCA-TGA------AAAATCATA-------G-AAGCCCGAT-GGCTTGTAGACTTTTTTA-----A--AGT-----ATATT--TGAATAAAAA----TT----GAGA--TGATTCGAC-CCTGAAG-TTTCTAGATCACCTAGTG----TGTTACTAA----------CACTTTTATCATCATACCTAAAATATATGAATTAGT
gi|10 : atgcaataatacaaataattaataataatgaaagtcagtcatcaattaatatgattcatactttcaaactcccttcctttactcaaaaaatgtgttgtcaatcaagttgatcacttcctaaggcatccacaacctcaatcatcactataaaaatatcattatatacattcgaagtatttcagcaataatgatttgcatcagatgattcaaataaccttttccaacttcaaccaagaaatatgaaaattttagatactttctctgtagttgtagtagctttctagatttcagtctt-AAACTCAGTGGTCTGAAGACT-AGGCCA-GT-GCGGTTTGA-GGGTCGGGTCAGTG-------AAA--TA-A-------G--AGTCTG-TGGGCTTGTAGACTTTTT-------A--AGT----CACA----TTTA-TAGAA----TGTTGAGATGCATAGAT--ACTTCTAAACAGTTAT-----------TT----TGT-----A----------TAATATTA
gi|12 : tgaatTCACAA-AAAA-CAGTG-TCCAAAGAC-AAGGCCA-GT-G-GATTTTA-AGGTCGG-TCAGTG-------AAAACAA-G-------G-AAGCCCGATGGGCTTGT-GACTTTTTA------A--AGT----TAAT----TGAA-
gi|13 : agtagctttcctcaatcaggTATGTGATAAACAT-GTACTATG-AAAATTTG-GGGGCCAGT-AAATTCC-A-TT-AGGGACCAGTAAATTCAG-GC-ATTTTACTGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTCCG
gi|14 : AT-ATAATATGTAAAATATGCGGGGCCAGT-GA-TTTC-ACT--GGGG-GCAGTAAATTCAGAACAAGTCTACTGGTCCTCC--GCCAG-CA------AGTTGTAAAAAAGTTTTCGtgaagactg
gi|15 : tTCCAAAAGATGAG-CCA-GTTG-GATTTAA-GG-CCG---CAG-G-------AAAATCA-A-------GGAAATTTGATGGGCTGGTA---CTTTT-------A--TGT----GACA----TGGA-ATAAA----TGTT--GATG--Ttgacgactg
gi|16 : tCTTCACTA-AAACTTGGTGGTCCGAAGACTGAGGCCA-AT-G-GATTTAA-GGGTt
gi|17 : gtCTTCATGA-AAACTCGATGATCCAAAGA-CGAGGCCA-GT-G-AATTTAA-GGG
gi|18 : gtCTTCACGA-AAACTCAGTGGTTTGAACACCGTGGCCA-GT-
gi|2 : aacagtCTTCCTGA-AAACTCTGTGGTCCGAAAACCTAGGCCA-GT-G-GATTTAA-GGGTCGGGTCTGTG-------AAAATCA-A-------G-AAGTCTGATGGGCTTGTAGACGTTTT-------A--AGT----CACA----TGAA-ATAAA-----------ATG-----AT--AT-TCTAAAC-T-TCT-----------TATT--TGT-----ATAATTTAAATTAATTTTACCATCAGA-ATAAAA---ATGAATCGGTAAAT-AC---TAT-ATAAG-GGATTAAAAG------TAAGTGTTTAG----AC--AAAATCT-CACT-AAA--------TTAACACCCCATAATGTGACT---GTGTGTGATAAACAT-GTACCATG-AAAATTTG-G-----------------------GAG-TCAGTAAATTCAG-AC-AGTCCACTGGTCCTACTGGCCAA-CA------AGTTTT--GAAAGTTTCTGCttatt
gi|4 : AAAT-ATGCATATAATAAG-GTATTAAGACAAAGTCTAACTACTTAACTGTACTTAACATAT-TANN-NNN--------NNNNNNNNNNNNNNNNNNNNT---GTATGTAATAAACTA-GTACTATG-AAAATCTG-GGGGCCAGT-AAATTTC-A-TTAGGGG-TCAGTAAATTCAG-GC-AGTTCACCGGTCCTACTGGCCAG-CA------AGTTTT--GAAAGTTTTCGCt
gi|5 : taaCTTCATGA-AAACTCTGTGATCTGAAGACTGAGGCCA-GT-G-GATTTTT-AGATTGGGTAAGTG-------AAAATAA-A-------A-ATGACTGGTGGGCTTGTAAACTTT-------------GC----AACA----TTGA-ATAAAATATTG----GATG--TAAAT--AC-TCTAAAT-GC-CT-----------TATT--TGT-----A----------CAATTTTACCATCAGA-ATAAAA---AAAAATT-GTCAATAAC---T-T-ATAAA-GTGTTaaagat
gi|6 : aacagtAAAA---ATGAATTGGCAA--------TCTAGTAAGTGTTTTGACAT------TAA--GTCTCACT--A-----AAT-TATACTTAGAATAACAGTTAAACATCCTATA-TCCCACTCATGTATGTGATAAA-ATCGTACTATG-AAAATTAG-GGCACTA---AA-GTTC-A-A--AG----C----AATTCA----------ACTGGTACTACTGACCAGTCATGAGGTAGTTTT--GAAAATTtagac
gi|7 : CTTCATGA-AAAGTCAGTGGTCCAAAGACCGAGGCCA-GT-G-CATTTTG-AGGTCGGGCCTGTGAAAATCAAAAATCA-A-------G-AAGTCTGATGGGCTTCTGGATTTTTT-------ATCAGTCGCACACA----TAAA-ATCAA----TG----TATG--TAAAT--TC-T-TAAAC-TCTCT-----------TAATAGCGT-----A----------TA--TTTACCGTCAGA-ATAAAA---ATAAATTGggtttgtcgagacctgt
gi|8 : agtAAAT------TAACTGTACAGTT--AT--AAA-----CATT-AGA--------TCTACATCCTACAAT---------GTACGTGATAAACAT----CTATG-AAAATTTG-GGGGCCAGTCAA-TTTCAA-T--AGGGATCAGTATATTCAG-GC-AGTTCACTGGTCCTACTGG-CAG-CA------AGTCTT--GAAAGTTTTCACa
gi|9 : agtctcactTTTGA-GG-TCGGGCCAGTG-------AAAATCA-AATTTCAAG-AAGTCCGATAGGCTTCTGGATTTTTTTTTTGGTC--AGT----CACACACATAAA-ATCAA----CG----GATG--TAGAT--AC-T-TAAAC-TCTCT-----------TA-----GT-----ACCG-------TAGATCTACCGTCAGA-ATAAAA---ATGAATTG--AAAT-aaaga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AATAGCAATAAATACAAATAATTATTAAAATAAATAACATCAGTACACAATTAAATGAATTCATACTTTTACAACTCCTTCCATTATCAAAAATGTGTTGCAACAAGTTGATATCTCTAAGGCATCCCACACATCAATATCACTATAAAATATACTATATTAACATTGAAGGATTTCAGCAAATAATGATTTTGCACAATGATCAAATAACCTTTCAATTTCAACAAGAATATGAAAAATTTAACTGTCTCTGTAGTATGT
Unaligned ( gi|11 ): CATACATCAAATATTGAGAATGAATGTATTATAATCAGCCTTGACATTGAAAATAAATTTATCCCTGTTTGAATGTGTTCCATCTCACCTATAAGGGACATGTAAAATTGCAACCATGAACCTCTCT