lowQualScore : 111
lowQualScore : 2 5 2 8 5 2 8 2 000 33 3
lowQualScore : . . . . . . . . ... .. .
lowQualScore : 7 3 7 0 3 7 0 7 777 99 1
consensus : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
Reference ( gi|17 ) : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|8 : AGGTTT-T-TA-GG-AAT-AAAT-ATT-TCTAATT-TT---T--AACT-TACCG
gi|7 : gcgcAGGTTT-T-TA-GGTCAT-AAAT-ATT-TCT-ATT-TTG--T--AACT-TACTGgtcacttag
gi|10 : agcgcatAGGTTT-T--A-GGTAATTAAAT-ATT-TCT-ATG-TT---T--AACT-TACCGtactt
gi|13 : agcctAGGTTT-TTTA-GGTAAT-AAATAATT-TCT-ATT-TT---T--AACT-T-CCGtact
gi|11 : gcttAGGTTT-TTTA-GGTAAT-AAAT-ATTGTCT-ATT-TT---T--AACT-T-CCGtac
gi|12 : ttAGGTTT-T-TA-GGTTAT-AA-T-ATT--CT-ATT-TT---T--AACT-TACCGtacta
gi|15 : gcatAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATTGTT---T--AGCTGTACtactta
gi|1 : atAGGTTTAT-TA-GGTTATGAAAT-ATT-TCTAATT-TTTGGT--AACT-TACTGgcgt
gi|9 : gtttgctctagcgcaGTTT-T-TA-GGT-AT-AAATGATT-TCTAATT-TTG--T--AACT-TACgtac
gi|2 : gcgcataTTT-T-TA-GGTAAT-AACT-ATT-TCT-ATT-TC---T--AACT-TACCgatacg
gi|6 : gcgcatagaaaaaacccacaTTT-C-TA-GGTAAT-AAAT-ATT-TCT-CTT-TC---T--AATT-TACCG
gi|4 : cataggaaaaaacgcaTTT-T-TATGGTAAT-AAAT-ATT-TCT-ATT-TC---T--AACT-TAC
gi|5 : ctaggaaaaaaaacacatTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TC---T--AAC
gi|3 : tgcataggaaaaaacccacaTTT-C-TA-GGTAATTAAAT-ATT-TCT-CTT-TC---TAAAATT-TACCGgt
gi|16 : cataggaaaaaacgcaTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGCGCATAGGAAAAAACACATTTATTAGATAATAAATATTTTTATA
Alignments
lowQualScore : 111
lowQualScore : 2 5 2 7 5 2 7 2 000 33 2
lowQualScore : . . . . . . . . ... .. .
lowQualScore : 5 0 5 5 0 5 5 5 000 77 9
consensus : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
Reference ( family-600 ) : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|1 : AGGTTTAT-TA-GGTTATGAAAT-ATT-TCTAATT-TTTGGT--AACT-TACTG
gi|10 : gtttgctctagcgcaAGGTTT-T--A-GGTAATTAAAT-ATT-TCT-ATG-TT---T--AACT-TACCGgtac
gi|11 : agcctAGGTTT-TTTA-GGTAAT-AAAT-ATTGTCT-ATT-TT---T--AACT-T-CCGtact
gi|12 : ttAGGTTT-T-TA-GGTTAT-AA-T-ATT--CT-ATT-TT---T--AACT-TACCGtacta
gi|13 : gcatAGGTTT-TTTA-GGTAAT-AAATAATT-TCT-ATT-TT---T--AACT-T-CCGtactta
gi|15 : gcttAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATTGTT---T--AGCTGTACtac
gi|16 : atTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-gcgt
gi|17 : gcgcataggaaaaaaatgcaAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|2 : TTT-T-TA-GGTAAT-AACT-ATT-TCT-ATT-TC---T--AACT-TACC
gi|3 : gcgcatagaaaaaacccacaTTT-C-TA-GGTAATTAAAT-ATT-TCT-CTT-TC---TAAAATT-TACCG
gi|4 : cataggaaaaaacgcaTTT-T-TATGGTAAT-AAAT-ATT-TCT-ATT-TC---T--AACT-TAC
gi|5 : ctaggaaaaaaaacacatTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TC---T--AAC
gi|6 : tgcataggaaaaaacccacaTTT-C-TA-GGTAAT-AAAT-ATT-TCT-CTT-TC---T--AATT-TACCGgt
gi|7 : cataggaaaaaacgcaAGGTTT-T-TA-GGTCAT-AAAT-ATT-TCT-ATT-TTG--T--AACT-TACTG
gi|8 : agcgcatAGGTTT-T-TA-GG-AAT-AAAT-ATT-TCTAATT-TT---T--AACT-TACCGtactt
gi|9 : gcgcGTTT-T-TA-GGT-AT-AAATGATT-TCTAATT-TTG--T--AACT-TACgtcacttag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCGCATAGGAAAAAACACATTTATTAGATAATAAATATTTTTATA
Alignments
lowQualScore : 111
lowQualScore : 2 5 2 7 5 2 7 2 000 33 2
lowQualScore : . . . . . . . . ... .. .
lowQualScore : 5 0 5 5 0 5 5 5 000 77 9
consensus : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
Reference ( family-600 ) : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|1 : AGGTTTAT-TA-GGTTATGAAAT-ATT-TCTAATT-TTTGGT--AACT-TACTG
gi|10 : gtttgctctagcgcaAGGTTT-T--A-GGTAATTAAAT-ATT-TCT-ATG-TT---T--AACT-TACCGgtac
gi|11 : agcctAGGTTT-TTTA-GGTAAT-AAAT-ATTGTCT-ATT-TT---T--AACT-T-CCGtact
gi|12 : ttAGGTTT-T-TA-GGTTAT-AA-T-ATT--CT-ATT-TT---T--AACT-TACCGtacta
gi|13 : gcatAGGTTT-TTTA-GGTAAT-AAATAATT-TCT-ATT-TT---T--AACT-T-CCGtactta
gi|15 : gcttAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATTGTT---T--AGCTGTACtac
gi|16 : atTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-gcgt
gi|17 : gcgcataggaaaaaaatgcaAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|2 : TTT-T-TA-GGTAAT-AACT-ATT-TCT-ATT-TC---T--AACT-TACC
gi|3 : gcgcatagaaaaaacccacaTTT-C-TA-GGTAATTAAAT-ATT-TCT-CTT-TC---TAAAATT-TACCG
gi|4 : cataggaaaaaacgcaTTT-T-TATGGTAAT-AAAT-ATT-TCT-ATT-TC---T--AACT-TAC
gi|5 : ctaggaaaaaaaacacatTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TC---T--AAC
gi|6 : tgcataggaaaaaacccacaTTT-C-TA-GGTAAT-AAAT-ATT-TCT-CTT-TC---T--AATT-TACCGgt
gi|7 : cataggaaaaaacgcaAGGTTT-T-TA-GGTCAT-AAAT-ATT-TCT-ATT-TTG--T--AACT-TACTG
gi|8 : agcgcatAGGTTT-T-TA-GG-AAT-AAAT-ATT-TCTAATT-TT---T--AACT-TACCGtactt
gi|9 : gcgcGTTT-T-TA-GGT-AT-AAATGATT-TCTAATT-TTG--T--AACT-TACgtcacttag
blockSeqs : . T T T A G A G G AA G
blockSeqs : . T . T G . A . G . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ***
originalCons : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
finalCons : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCGCATAGGAAAAAACACATTTATTAGATAATAAATATTTTTATA
Alignments
lowQualScore : 111
lowQualScore : 2 5 2 7 5 2 7 2 000 33 2
lowQualScore : . . . . . . . . ... .. .
lowQualScore : 5 0 5 5 0 5 5 5 000 77 9
consensus : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
Reference ( family-600 ) : AGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|1 : AGGTTTAT-TA-GGTTATGAAAT-ATT-TCTAATT-TTTGGT--AACT-TACTG
gi|10 : gtttgctctagcgcaAGGTTT-T--A-GGTAATTAAAT-ATT-TCT-ATG-TT---T--AACT-TACCGgtac
gi|11 : agcctAGGTTT-TTTA-GGTAAT-AAAT-ATTGTCT-ATT-TT---T--AACT-T-CCGtact
gi|12 : ttAGGTTT-T-TA-GGTTAT-AA-T-ATT--CT-ATT-TT---T--AACT-TACCGtacta
gi|13 : gcatAGGTTT-TTTA-GGTAAT-AAATAATT-TCT-ATT-TT---T--AACT-T-CCGtactta
gi|15 : gcttAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATTGTT---T--AGCTGTACtac
gi|16 : atTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-gcgt
gi|17 : gcgcataggaaaaaaatgcaAGGTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TT---T--AACT-TACCG
gi|2 : TTT-T-TA-GGTAAT-AACT-ATT-TCT-ATT-TC---T--AACT-TACC
gi|3 : gcgcatagaaaaaacccacaTTT-C-TA-GGTAATTAAAT-ATT-TCT-CTT-TC---TAAAATT-TACCG
gi|4 : cataggaaaaaacgcaTTT-T-TATGGTAAT-AAAT-ATT-TCT-ATT-TC---T--AACT-TAC
gi|5 : ctaggaaaaaaaacacatTTT-T-TA-GGTAAT-AAAT-ATT-TCT-ATT-TC---T--AAC
gi|6 : tgcataggaaaaaacccacaTTT-C-TA-GGTAAT-AAAT-ATT-TCT-CTT-TC---T--AATT-TACCGgt
gi|7 : cataggaaaaaacgcaAGGTTT-T-TA-GGTCAT-AAAT-ATT-TCT-ATT-TTG--T--AACT-TACTG
gi|8 : agcgcatAGGTTT-T-TA-GG-AAT-AAAT-ATT-TCTAATT-TT---T--AACT-TACCGtactt
gi|9 : gcgcGTTT-T-TA-GGT-AT-AAATGATT-TCTAATT-TTG--T--AACT-TACgtcacttag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCGCATAGGAAAAAACACATTTATTAGATAATAAATATTTTTATA