lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 3333 4444444444 111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 11 2222 444 1 6666666666 55 22 11 22 22 22 2 1 11 1111 222 1111111111 444 1 2222 1111111 5555555555555555555555555555555555555555555555555555555555555 222222222 111 2 55 11 1 11 11 1 33 5555 11 333 111 1 4 1 22222 11 11 1 1 444 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 3333 2222 11111111111111111111111111111 33 3 3 4444444 88888888888888 22 11 2 333333 1 33 4 11 222 1 1 1 1 333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 22 222 111111111111111111111111111111111111111111111111111111111111 11111 3333 11 777777777 55555555 33333333333333 22222222222222222222222222222222222222222222222222222222222222222222 3 44 1 3333 1 1
lowQualScore : 6 3 888888888 5 4444 3333333333 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 3 3 888888 3 33 8 2 2 7 4444 333 5 1111111111 7 55 7 00 88 77 77 3 44 0 0 11 8 6 4444 6 6 888 9999999999 777 4 8 2222 8888888 2 2222222222222222222222222222222222222222222222222222222222222 5 5 5 000000000 888 4 5 0 000 2 55 33 6 0 33 22 3 0 33 0000 99 666 111 3 0 0 6 7 3 44444 88 88 3 5 5 666 5 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 777 7777 2 7777 11111111111111111111111111111 33 0 1 3333333 88888888888888 22 88 7 7 3 333333 3 3 7 00 7 0 44 000 6 5 3 5 5 5 5 666 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 99 88 5 22 000 3 888888888888888888888888888888888888888888888888888888888888 5 2 0 0 5 22222 5 0000 33 0 5 111111111 888 11111111 55555555555555 55 7 3 3 5 22222222222222222222222222222222222222222222222222222222222222222222 8 4 1 66 0 4 7777 5 5 0 7 7 5 6 6
lowQualScore : . . ......... . .... .......... ... .................................................................................................................................................. .. . . ...... . .. . . . . .... ... . .......... . .. . .. .. .. .. . .. . . .. . . .... . . ... .......... ... . . .... ....... . ............................................................. . . . ......... ... . . . ... . .. .. . . .. .. . . .. .... .. ... ... . . . . . . ..... .. .. . . . ... . . ........................................................................................................................... ... .... . .... ............................. .. . . ....... .............. .. .. . . . ...... . . . .. . . .. ... . . . . . . . ... . .................................................................................. .. .. . .. ... . ............................................................ . . . . . ..... . .... .. . . ......... ... ........ .............. .. . . . . .................................................................... . . . .. . . .... . . . . . . . .
lowQualScore : 7 2 333333333 7 2222 0000000000 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 2 2 000000 2 88 8 5 5 3 5555 000 5 7777777777 3 00 3 00 00 55 55 0 00 0 5 00 0 7 2222 7 0 000 0000000000 777 3 7 3333 6666666 2 4444444444444444444444444444444444444444444444444444444444444 0 0 0 000000000 888 6 0 1 000 0 00 88 0 0 88 55 2 0 00 7777 77 777 000 2 0 0 0 3 3 00000 55 55 0 5 0 000 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 2222 5 0000 22222222222222222222222222222 88 0 7 3333333 00000000000000 77 33 3 3 3 000000 2 2 0 00 3 0 00 555 0 0 0 5 0 0 7 999 8 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 22 99 4 22 111 6 555555555555555555555555555555555555555555555555555555555555 0 5 1 5 0 55555 7 9999 11 1 7 666666666 888 22222222 11111111111111 00 3 3 3 9 44444444444444444444444444444444444444444444444444444444444444444444 9 4 1 99 2 4 5555 0 0 7 7 0 0 0 0
consensus : CCCAGCGGGCACCTTCAACGTT---G-----AAGCAACGTTGAAA-TA---TGGTTGTTTT------ACGTTG---ATCA----A-CCA--A----CNNCNACGNTTTTTNNNCCCAACGTTANANTNTCNNANNTTGNNNAANCGNCGTNNNTCGNNCGGTNNTNTNNCACNNNCGT----GTGACA-ACGTTG-----------TT-C---------------AACGTTGAGGGTTTATAAATTGTA--T-A-TAAAATATAT--GTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAAAGTATACGCTCATATGGTAAATTCAGTT--CTA--GTCATTTTGTTTTA--CGCAGTAATCAAAGTTTTTGTCATG-TCTGCCNGTGAAAAAAAAAGCGGCNTACANTTTGCCCATAACTAAAANTGGT--TGT-TA-CGTTGATCA----ACCAAAC-TTCAAACGTTGTGTTT---CAACG---TTAGACCTTTTCAAACGTTG--AAGGNCTCAACGTTGAGAAGA-G-TTCAAC---GT-TTG-ATTTTACAAAC-GTTGG---A-G------T---GA-CA-A-CGT---------TGT---TCCAAC-GTTGCTTCA---ACGTTGAGGGTT-ATAAATTG--TATAATAAAATATATGTGA-TAAAA--ACTGGG-AAAAGATCAGTTCTTGTC-ATGAGCAAGTAAAATAGTAAA-A--ATACGCCTCATATGGT---AATTCAATTCT-A-TATCAT-TTTGTTTTACGCAGTAATCAAAGTTTTTGTCAT-GTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCA-AACTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG----TTTCA---ACG-T-TGAGGGTTTAT-AAATTGTATAAT-GAAATA-ATATGTTGATTAAA--TA-AAACTGGGAAAAGA-TCAGTTCTTGTC-ATGAGCAA-------GTAAAA--TAGTAAAA---ACGCTC-ATATGG--TAAATTCAA-TTCTAATAT-CATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATGTCTCCGCAGTGAAAAAAAGCGGCNTACATTTTGCCCATGTGGCAAGGAATGCCATTTTGT-AAATAGAGT-TTGTCGTTCCTTACATTC--GCAG---------A---TTA--------AGT----T-TA-C----TAAANTG-GT------------A------TA---TAGTTAATTTCCTAATCG-GTAGTTTAGTGGATTGCAACCTTACAATAA--AT-CAGTAAATA-TTA-ACATG-TT----GTAAGT-ATT-TAATTGGTTTTGAAT---ATATAGGCCCAGTA-TATTGTAANATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TNGATTTATTAC-GTAAAGTTGC-ATATA-TAT-TATAG---TGATG--T--TAGAGGCTG--TT--N-N--GG-GAG--CGGTANCACGACATCT-GTGT-GACNCCGTGTG-NCGTTT--G--AT-T-----A---TACAGCGAA-----CACTGTGTAA-T--ATCTA--C----GAG-GGA-ATCCTCT--GTGTACGGTGGTCGG-CAACGCTGAAT--AAG-TGTTGAC-GACTCTG-ATAATACTTTGGTGTGA
Reference ( gi|1 ) : CCCAGCGGGCACCTTCAACGTT---G-----AAGCAACGTTGAAA-T----TGGTTGTTTT------ACGTTG---ATC-----A-CCA--A----CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----GTGACA-ACGTTG-----------TT-T---------------AACGTTGAGGGTTTATAAATTGTA--T-A-TAAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAA--TATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATG-TCTGCCAGTG--AAAA--AGCGGCTTAC-TTTTGCCCATAACT-AAAGTGGT--TGT-TA-CGTTGATCA----ACCAAAC-TCCAAACGTTATGTTT---CAACGGTTTCAGACTGTTTCAAATGTTG--AAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTACAAAC-GTTGG---A-G------T---GA-CA-A-CGT---------TGT---TCTAAC-GTTGTTTCA---ACGTTGAGGGTTTATAAATTGGTTATAATGAAATATATGTAA-TAAAA--ACTGGG-AAAAGATCAGTTCTTGTC-ATGAGCAAGTAAATAAGTAAAGATAATACGCTTCATATGGT---AATTCAATTCT-A-TATCAT-TTTGTTTTAC-CAGTAATCGAAGTTTTTGTCAT-GTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAATAACA-TGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCA---ACGCT-TGAGGGTTTAA-AAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAAG--TCAGTT-TTGTCCATGAGCAA-------GTAAAA--TA-TA------ACGCTCAATATGG--TAAATTCAAGTTCT-AT-T-CATTTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AAATAGAGTTTTGTCGTTCCTTACATTC--ACAG---------A---TTA--------AGT----T-TA-C----TAAACTG-GT------------A------TA---TAGTTAATTGTCTAATCGTATAGTTTGGTGGATTGCAACCTTACAATAA--ATGCGGTAAATACTTA-ACATG-TT----GTAAGT-ATTATAATTGGTT---AATT--ATATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGC-A-ATATTAT-TATAG---TG-T---T--TAGAGGCTG--GT--A-A--GGTGAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACATTT--G-CAT-TAA---A---TACAGTTTA-----CACTGTGTAAATA-ATATA--T----GAG-GGA-A-CCTCTGAGTGTAGGGTGATCGG-CAACGCTGAAA--TAG-TGTTGAC-GACTCTGAATAAAACTTGGATATGAAAGTT
gi|5 : CCCAGCGGGCCACTTCAACGTT---G-----AAGCAACGTTGAAA-T----TGGTTGTT--------ACGTTG---ATC-----AACCAA-A----CTTCAACGTTGTTTTTTCCCAACGTTAGACTTTTCCAACTTGAGGATTCAACGTTAATTCAACGGTTGTATTTCAACAACGTTGTAGTGACA-ACGTTG-----------TT-CTAACGTTGTTTCACAAACGTTGAGGGTT-ATAAATTGTA--T-A-ATAAATATAT--GTGATAAAAACT-GGAAAAGATCAGTTCTTGTCATGAGC-AAGTAAAATAGTAAAA---ATACGCTCATATGGT-AATTCAGTT--CTAATGTCATTTTGTTTTA--CGCAGTAATCAAAGTTTTTGTCAT----TGTCCGTGAAAAAA--AGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGT-TAGCGTTGATCA----ACCAAACTTTC--ACGTTNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA-GTG------AC-AAC-GTT--------------T---TC-TA-AACGT---------TGT---TC-AAC---------------GTTGAGGTTTAATAAATTG--TATAA-GAAATATATGTGATTAAAAATATTGGGAAAAAGATCAGTTCTTGTCAATGAGCAAGTAAAATAGTAAA-AT-ATACGCCTCATATGGTTTAAATTCAATTCTAA-TATC-T-TTTGTTT
gi|20 : CCAGCGGGCACTTT-AACGTT---G-----AAGCAACGTTGAAA-TA---TGGTTG--TT------ACGTTG---ATCA----A-CCA--A------ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTACAACGTTGGA----GTGACA-ACGTTG-----------TTCT---------------AAC------AGTTTAGTGATTGCACCT---TACAATA-ATCAGTAATAAACA-TGG
gi|12 : CAGCGG-CAC-TTCAACGTT---G-----AAGCAACGTTGAAA-TA---TGGTTG-TGT------ACGTTG---ATCA----A-CCA--A----ACTTCAACGTTGTTCCAACGTTAGATCTTTTCACGTTGAGGTTTCAACGTGTATCCGTCGTGTTGATTTACAACGTTGATTT----AAAACACACGTTGTTCTAACGTGTTT-C---------------AACGTTGAGGG-TTATAAATTGTA--TAA-TAAAATATTT--GTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA--TAAAATAGTAAAAAGTATACGCTCATATGGTAAATTCAATT--CCAT-ATCATTTTGTTTTA--TGCAGTAATTAAAGTTTTTGTCATG-TCT
gi|5 : ACCCTCAACGTTTGTG-----AAACAACGTTAGAA-
gi|12 : cccagcgggccacttcaacgttgaagcaacgttgaaattggttgttacgttgatcaaccaaacttcaacgttgttttttcccaacgttagacttttccaacttgaggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgACCCTCAACGTT---G-----AAAC-ACGTTAGAA-CAACGTG--TGTTTTAAATCAACGTTGTAAATC-----A-ACACGA----CGGATACACGTTGAAACCTCAACGTGAAAAGATCTAACGTTGGAACAACGTTGAAGTTTGGTTGATCAACGTACACAACCAT----ATTTCA-ACGTTGC----------TT-C---------------AACGTTGAAGtataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|5 : cagcggcaAACGTT---GGGAAAAAACAACGTTGAAGTT----TGGTTGATCA------ACG-TA---ACA-----A-CCA--A----tataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|19 : cccagcgggccacttcaacgttgaagcaacgttgaaaGTTGAAA-TA---TGGTTGTT--------ACGTTG---ATCAATTTA-CCA--AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNN-NNNNNN-----------TT-TC--------------AACTATGAGGGTTTATAAATTGTA--T-AATAAAATATAT--GTGATCAAAACTGAGAAAAGATCAGTTCTTGTCAagacttttccaacttgaggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : TTCAGTATATTA----CATTT-GTTTTA--CGCAGTAATCAAAGTTTT-GTCATGCTCCGC-AGTG--AAAAAAAGCGGCTTAC-ATTTGCCCAT
gi|5 : aatgaaattgctaaaacttttttgg-AAATTGGT--TGT-TA-CGTTGATCA----ACCAAAC-TTCAA-CGTTGTTTTTTCCCAACG---TTAGACT-TTTCCAAC-TTG--A-GGATTCAACGTTAA--------TTCAAC---GG-TTGTATTTCAACAAC-GTTGT---A-G------T---GA-CA-A-CGT---------TGT---TCTAAC-GTTGTTTCACAAACGTTGAGGGTT-ATAAATTG--TATAAT-AAATATATGTGA-TAAAA--ACTGG--AAAAGATCAGTTCTTGTC-ATGAGCAAGTAAAATAGTAAA---AATACGCT-CATATGGT---AATTCAGTTCT-AATGTCAT-TTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTGAAAAAAA--GCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCA-AACTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-----TTCA---ACG-T-TGAGG-TTTAATAAATTGTATAA--GAAATA--TATGT-GATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGTCAATGAGCAA-------GTAAAA--TAGTAAAATATACGCCTCATATGGTTTAAATTCAA-TTCTAATAT-C-TTTTGTTTgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|12 : cccagcgggccacttcaacgttgaagcaacgttgTGGT--TGTGTA-CGTTGATCA----ACCAAAC-TTCAA-CGTT--GTTC---CAACG---TTAGATCTTTTCA--CGTTG--A-GGTTTCAACGT---------GTATC--CGTCGTGTTG-ATTT-ACAA-C-GTTG----A-T------TTAAAA-CACA-CGT---------TGT---TCTAAC-GT-GTTTCA---ACGTTGAGGGTT-ATAAATTG--TATAATAAAATATTTGTGA-TAAAA--ACTGGG-AAAAGATC-GTTCTTGTC-ATGAGTAATAAAAT-AGTAAAAAGTATACGC-TCATATGGTA--AATTCAATTCC-A-TATCAT-TTTGTTTTATGCAGTAATTAAAGTTTTTGTCAT-GTCT
gi|19 : cagcggcacttcaacgttgaagcaacgttgaaataTGGT--TGT-TA-CGTTGATCAATTTACCAAAC-
gi|20 : gttgaaataTGGT--TGT-TA-CGTTGATCA----ACCAAAC-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcaactatgagggtttataaattgtataataaaatatatgtgatcaaaactgagaaaagatcagttcttgtca
gi|27 : ccagcgggcactttaacgttgaagcaacgttgaaata-CGTTGATCA----ACCAAAC-TTC-AACGT--TGTTT---Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttacaacgttggagtgacaacgttgttctaacagtttagtgattgcaccttacaataatcagtaataaacatgg
gi|5 : TCAA--GTTGGAAAAGTCT-AACGTTGGGAAAAAA---CAAC---GT-T-GAAGTTTG------GTTGATCAACG------T---AA-CA-A-C-C---------AAT---TTCAAC-GTTGCTTCA---ACGTTGAAG
gi|12 : cccagcgggccaACGTTG--AAA-CCTCAACGT-GAAAAGA---TCTAAC---GT-TGG-A----ACAA-C-GTTGA---A-GTTTGGTT---GATCA-A-CGTACACAACCATAT---TTCAAC-GTTGCTTCA---ACGTTGAAGggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|20 : cagcggcaATTTTACAA-C-GTTGG---A-G------T---GA-CA-A-CGT---------TGT---TCTAACAGTTgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|20 : ccagcgggcactttaacgttgaagcaacgttgaaatatggttgttacgttgatcaaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAACTGTTAG---A-------------A-CA-A-CGT---------TGTCACTCCAAC-GTTGTtagtgattgcaccttacaataatcagtaataaacatgg
gi|20 : ccagcgggcactttaacgttgaagcaacgttgaaatatggttgttacgttgatcaaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttt-G------T---AA-CA-A-CCA---------TAT---TTCAAC-GTTGCTTCA---ACGTTAAAGagtgattgcaccttacaataatcagtaataaacatgg
gi|19 : ccagcgggcaTTTCA---ACTATGAGGGTTTATAAATTG--TATAATAAAATATATGTGA-TCAAA--ACTGAG-AAAAGATCAGTTCTTGTC-Agttgatcaaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttacaacgttggagtgacaacgttgttctaacagtttagtgattgcaccttacaataatcagtaataaacatgg
gi|6 : gttgaaatatggttgttacgttgatcaatttaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-A-TATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCAT-GCTCCGCAGTGA--AAAAAAGCGGCTTACA-TTTGCCCAT
gi|5 : aatgaaattgctaaaacttttttggttcagTTTCACAAACG-T-TGAGGGTT-AT-AAATTGTATAAT--AAATA--TATGT-GAT--AA-----AAACTGGAAAAGA--TCAGTTCTTGTC-ATGAGCAA-------GTAAAA--TAGTAAAAAT-ACGCTC-ATATGG--T-AATTC-AGTTCTAATGT-CATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCAT-TGTCC---GTGAAAAAAAGCGGCGTACATTTTGCCCATgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|12 : cccagcgggccacttcaacgttgaagcaacgttgaaattggttgttacgttgatcaaccaaacttcaacgttgttttttcccaacgttagacttttccaacttgaggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgTTTCA---ACG-T-TGAGGGTT-AT-AAATTGTATAATA-----AAATAT-TTG--TGA---TAAAAACTGGGAAAAGA-TCGTTC-TTGTC-ATGAGTAATAAAATAGTAAAAAGTA-TA-------CGCTCA-TATGG--TAAATTCAA-TTCC-ATAT-CATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCATGTCTaactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|19 : cagcggcacttcaacgttgaagcaacgttgaaatatggttgtgtacgttgatcaaccaaacttcaacgttgttccaacgttagatcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgTTTCA---AC--TATGAGGGTTTAT-AAATTGTATAAT-AAAAT--ATATG-TGATCA-------AAACTGAGAAAAGA-TCAGTTCTTGTC
gi|6 : gttgaaatatggttgttacgttgatcaatttaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AT-TACATTT-GTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAAATAGAG--TTGTCGTTCCTTACATTCCTACAG---------A---a
gi|21 : aatgaaattgctaaaacttttttggttcagtaATGTGGCAAGGAATGCCATTTTGT-AA--AGAG--TTATCTTTTCTTACATTA--GCTG---------A---TTA--------AGTAAAATGTA-C------AATTATAC------------A------TG---TAGTTAATTGTCTAATCG-GTATTTTAGT-GATTGC-ACCTTACAATAA--gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|9 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaATGTGGCAAGGAATGCCGTTGTGT-CAAAGGAGT---GTCGTTCCTAACATTC--CTAG---------AGAGTTGT-------ATT----T-TC-T----TACATTA-GTTGATTAGTTAAAA------TAAAATAGATAATTTCCTACTCG-GT-GTTTAGTG-ATCCCA--CTTACAATTA--TTAT--TAGATA---A-ATATG-TTTCA-GGAAGTGATT-T--TTGAAT---ACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAAAtc
gi|2 : gcgattcaaagcagggtgtatacatgcaagagagtctgcatgaatgcaaatgannnnnnnnnnnnnnnnnnnnnnnnngaagcgtaaatccccagtctggctgcaggattaagcagcagagaccagtaacaaagcttgacaggtagaatttatgcgagtagcataaaactttggggttgggtaTGTGGCAAGGAATGCCATTTTGT-AAATAGAG--TTGTCGTTCTTTACATTCCTACAG---------AG--TTA--------TCT----T-TT-C----T--------T------------A------CAT--TAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAA--TTA-AGTAA--A-ATGATAAATAGTTA-tataaatagtgacg
gi|7 : TGTGGCAAGGAATGCCATTTTGT-AAATAGAG--TTGTCGTTCTTAACATTT--CTAGAGAGTTGTCA---TTACTTACATTAGT----T-GA-TTAAGTAAAAT--GC------------A------TA---TAGTTAATTTCCTAATCA-GTAGTTTtagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaactctgtacatcggtgcgactaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|10 : GTGGCAAGGAATGCCATTTTGT-AAATAGAGTT--GTCGTTCCTAGCATT---------------------------------T----C-TA-C----ATAGCTG-GT------------A------TA---TAGTTAATTTCCTAAACG-GTAGCTTAGT-GATTGC-ATCTTACAATAA----GCA--------TTA-----G-TT----ATGAAT-A----------------------TATAGGTCCGGTA-TATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-TAGC-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|17 : AAGGAAAACCATTTTAT-AAATAGAG--TTGTCGTTCCTTACATTT--CTAG---------A---cattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggcgcAGAGTTGTAT--TTTCTTACATTA--GTTG---------A---TTA---------GT----T----------AAA----AT------------A------AA---TAGATAATTTCCTACTCG-GTAGTTTAGTG-ATCCCA-CCTTACAATAATTAT-TAGTAAATA--------TG-TTTTTAGGAAGTGATTTTGAATACTA---GA----ATATAAGACCAGTA-TATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTAgagtaatattttcttacattacgct
gi|2 : agttgtcgttcctaacattcctag---------A---TTA--------AGT---------------AAAATG-AT------------AAATAGTTA---TAGTTAATTTCCTAAACG-GTAGTTTAGTGATTTGCAACCTTACAATAA---T-CAGTTAATA---A-ACATG-TT----GTAAGT-AGTATAATTGGTTTTGAATT--ATA--ACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAA-ATATAAT-TATAG---TG-A---TGATAGAAGCTGT-TT--G-C--GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACGTTT--G------AG---A-----------A-----CACTGTGTAATC---TACC--T----GAGAGGA-ATCCTCT--GTGTACGGTTATCGG-CAACGCTGAAT--AAG-TGTTGAC-AACTCTGcagagtaacatataaatagtgacg
gi|6 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnnta--------AGT----T-TATC----TAAAATG-TA------------A------TA---TAATTA-TTGTCTAATCG-GTAGTTTAGTG-ATTACA-CCTTACAATTA---T-CAGTA-----TTACACATGGTT----GTAAGT-ATTATAATTGGTTTTGAAT---ATATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGC-ATATA-----TATAG---TGATA--T--TAGAGGCTG--TT--T-T--GGTGAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACATTT--G-AAC-T-----A---TACAGCGAA-----CACTGTGTAATTT-ACCTG--A----GAG-GGA-ATCCTCT--GTGTACAGTGATCGG-CAACGCTGAAT--AAG-TGTTGAT-GACTtacatcggtgcgactaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAGTTTAGTG-ATTGCA-CCTTACAAT-A--AT-CAGT-AATA---A-ACATG-gtacatcggtgcgactaacgctgaataagt
gi|16 : ccagcgggcactttaacgttgaagcaacgttgaaatatggttgttacgttgatcaaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttacaacgttggagtgacaacgttgttcta-TT----GTAAGT-AGTTTAAGTGGTTTC-GATA--TTATAGGCTCAGTA-TATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC-A-----TAT-TATAG---TT-TACGT--CAGAAACTG--TT--T-G--GG-GAGATCGGTA-CACGATATCT-GTGTGGACACg
gi|14 : agtaaaatgtatgttagttaatgtcagttcTGGTTTTGAAT---ATATAGGCCCAGTA-TATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGC-ATATA-----TATAG---TGATG--T--TAGAAGCTG--GT--A-T--GGTGAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACATTT--G--AT-T-----A---TACAGTTTA-----CACTGTGTAATC---TATA--T----GAGAGGA-A-TCTCT--GTGTTGGGTGATCGGCCAACGCTGAAT--AAG-TGTTGAC-GACTCTGatgtgtcattcttgaacgtaacacgacttatgtgtacagtgatcggcctacgctgagtaattgtt
gi|3 : T--GTATAGATCCAGTA-TATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGC-ATATA-----TATGGGGATG-----T--TAGAAGCTA--TT--T-T--GGTCAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTG-GGTCCTTT--GACAT-------A---TATAGCATG-----GACTGTGC---TT-GTCTACCC----GAG-GGAGA-ACTCTCTGTGTACGGTGGTCAG-CAACGCTGAAT--AAG-TGTTGAC-GAAT-----TAGTACTTTGGTGTGAtacatcggtgggaactaatgctggaataagtg
gi|4 : ttttaatatacaTTATTAT-GTAAAGTTGC-A-----TATATATAG---TG-A---TGCTAAAGGCGG--TT--A-A--GG-GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGC-----TTT--A-T-T-TGA---ACGGTACAGCGAA-----CATTG------TA-ATCTA--CCCGAGAG-GGA-ATCCTCT--GTGTATGGTGGACGG-CAACGCTGAAT--AAG-TGTTGAC-GACTCTGctaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|24 : AT-GTAAAGTTGC-A-----TATATATAG---TGATG--T--TGGAGGC-G--G---A-ATTGGCGAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACATTT--tacatcagtgcgactaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|15 : -TATAG---TGATG--T--TAGAGGCTG--GT--ATG--GGAGAG--CGGTATTACAGCATAT-CTGC-GATATCGTTTGACAATTA--G-AAC-T-----A---TACAGCGAA-----CACTGT-TATCT--ACCTG--A----GAG-GGA-ATCCTCT--GTGTACAGTGATCGG-CAACGCTGAAG--AAA-TGTTGAA-GGCTCTG
gi|23 : cata---T--TAGAGGCTATTCT--A-A--A--AAA--CGCTTTTACGACTTCT-GAGA-GACACCGTGTGCCCTTTT--G-------A---A---TACAGCGAA-----CACTGTtacatcggtgcgactaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|22 : gtgatg--TAGAGGCTG--TTTTG-A--GA-GAG--CGGTATTACTTCATTT-CTGC-GGTACCGTGTGACAATTTGAG-CA--TA---------ACAGTGAA-----CACTGT---AATCTGCCTA--A----GAG-GGA-ATCCTCT--GTGTACAGTGATTGA-CAACTCTGTACCTCAG-TG-CGACTAACGCTGAATAAaatctacctga
gi|7 : TG--GT--T-T--GGAGAG--CGGCAACACGACATTA-GTGT-GACTCCGTAC-ATCGTTT--G--ATCTAT---A---TACA-TGTAGCAAACGCTGTGC---TT-ATCTA--CCGGAGGG-GGA-ATCCTCTG--TGTGACGTGGTCGG-CAACGCAGAA---TAACTGTTGAC-GACTATGTACAAgtgtt
gi|10 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-GTGT-GACTTCATGT-----TTT--G-T-T-TGATCGA---TACAGCGAA-----CGCTGTGTAA-----TCTA--CCCGAGGG-GGA-ATCCTCTG--TGTAAGGTGGTCAA-CAACGCTGAAtggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CAACAATAGGACGCTAGAGGACGATTTAAACAGAGCGGTAACACGATACTTTCGTGAATATGACCAAGCTACACGCAACCTGAGTTGAAGAGATTCTCTGTATATGGTGTACGGCAACGCGACAAAGCGCATGGACGACTTAGGTCACAGCACTGAAAAATAGGGGAGGGTGGATATTCCCACGGTAGACCACTACGATTGGAATCGAAGTGTTGTATTTCCCGGTAGAACGCTGGAGAGGGTGCTAGTATCCCCGTGAACGAGAGGTACATGTAATCCTGGTACCTTGTGGTATGGTTAGCCTCGGAGCGCGTCGGTCATTACTTACTGAGTGTGTGAAATTAAAGTTAGCCTCTGGTGATAAGTGGTCGACGTCCTTTTAGACAGGTCAGGCAGACCTAAAAGTTACGTTGCGCTGATAGATTGTATATATTGAGGCGCACCAGTTCTCTTAGGGTCATGTAGACCAATTGTAAATACGTTGCGCATATCTGCGCACTGAGATCTTTAGGTCTAA
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333 1111 22222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 1 1 2 55 8888888 55 8888 44 1 1 1 2222222 111 1 1 7777777777777 2222 1 2 1 22222222 1 111 1 11 22222222 2 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 2 33 33 1 44444 2 1 1 333 555555555 2 2 22 2 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 222222 8888888888888888888888888888888888888888888888 111111 11 11 22222 22222222 33333 3333333 11111 2222 11 333333 11 11 22222222222 555555555555555555555555 1 55555 1
lowQualScore : 5 33333 9 7777 3 44444 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 8888 3 3 0 3 3 55 6 2222222 55 1 5555 1 11 2 1 3 3 5 4444444 777 0 6 3 66 2 5 77 3333333333333 0000 0 0 3 3 33 3 3 99999999 0 2 3 2 777 3 88 7 6 7 6 88888888 8 3 3 6 3 3333 88 1 2 5 3 2 2 5 88 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 2 4 4 55 55 5 11111 4 0 5 5 000 333333333 0 0 77 0 5 7 666 4 66 5 5 5 3 1 5 2 0 5555555555555555555555555555555555555555555555555555555555555555555555555555 2222 2 444444 7 9999999999999999999999999999999999999999999999 0 444444 5 99 88 22222 5 3 66666666 5 1 77777 4 0 5 4 4 1111111 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 4 66 99 77777777777 2 6666 3 1 444444444444444444444444 6 44 33 2 7 999 2 0 2 33 33 3 2 00000 0 3 1
lowQualScore : . ..... . .... . ..... ................................................................................... .... . . . . . .. . ....... .. . .... . .. . . . . . ....... ... . . . .. . . .. ............. .... . . . . .. . . ........ . . . . ... . .. . . . . ........ . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . ..... . . . . ... ......... . . .. . . . ... . .. . . . . . . . . ............................................................................ .... . ...... . .............................................. . ...... . .. .. ..... . . ........ . . ..... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . .. .. ........... . .... . . ........................ . .. .. . . ... . . . .. .. . . ..... . . .
lowQualScore : 0 33333 8 2222 2 55555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333 3 3 0 0 0 00 0 0000000 00 0 0000 0 00 3 0 3 2 5 3333333 555 0 5 2 22 5 5 00 2222222222222 0000 0 0 2 0 22 2 2 55555555 0 0 2 0 555 3 33 3 7 3 7 77777777 7 3 3 7 3 0000 55 0 5 5 0 5 5 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 5 0 0 55 55 5 55555 0 0 5 0 000 555555555 0 0 55 0 5 3 777 0 00 5 0 5 0 0 5 5 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 9 444444 5 2222222222222222222222222222222222222222222222 8 444444 0 55 88 11111 0 6 88888888 0 4 33333 7 1 0 4 4 8888888 4 0 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 8 77 11 11111111111 9 1111 0 2 444444444444444444444444 2 22 44 5 5 222 5 0 5 44 99 6 5 00000 5 4 5
consensus : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAATATGGTTGTTTTACGTTGATCAA----CCAA-CTNCAACGTTGCTTNNNNNCAACGTTGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTACAACGTTGGAGTGACAACGTTG----TTC-AAC-GTTGAGGGTTTATAAATTGTATAATAAAATATATGTGATNAANACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAA--TATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTG----AAAAAGCGGCTTAC-TTTTGCCCATAACTGAAANTGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGT-TTT---CAACG---TT-AGACCTTTTCAAACGTTGAAGGNTTCAACGTTGAGAANA--A--TTCAA---CGT-TTGTATTTNACNAACGTTG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TTATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---AA---TACGC-TCATATGGTAA-TTCAATTCTA-TATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCAT-GTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAATATATANACTGGGAAAAAGATCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCTTACATTA--GCTGATTAAGT----T-T----------------------A-C-AA----AATG-GTATATA------GTTAATTTCCTAATCG-GTAGTTTAGTGGATTGCAACCTTACAAT-A--AT-CAGTAAATA-TTA-ACATG-TTGTAAGTA-TTATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-T-AA--T-AT--CTA--C----GAG-G--GAATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAA--TAAGTG--TTGAC-GACTCTG-----TACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAATATGGTTGTTTTACGTTGATCAA----CCAA-CNNCNACGNTTTTTNNNCCCAACGTTANANTNTCNNANNTTGNNNAANCGNCGTNNNTCGNNCGGTNNTNTNNCACNNNCGTGTGACAACGTTG----TTC-AAC-GTTGAGGGTTTATAAATTGTATA-TAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAAAGTATACGCTCATATGGTAAATTCAGTT--CTA--GTCATTTTGTTTTA--CGCAGTAATCAAAGTTTTTGTCATGTCTGCCNGTGAAAAAAAAAGCGGCNTACANTTTGCCCATAACTAAAANTGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGTGTTT---CAACG---TT-AGACCTTTTCAAACGTTGAAGGNCTCAACGTTGAGAAGA--G--TTCAA---CGT-TTG-ATTTTACAAACGTTGGAGT---GACA-ACGTTGTTCCAACGTTGCTTCA---ACGTTGAGGG-TTATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---AA---TACGCCTCATATGGTAA-TTCAATTCTA-TATCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCAT-GTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACG-TTGAGGGTTTATAAATTGTATAAT-GAAAT-AATATGTTGATTAAATA---AAACTGGG-AAAAGATCAGTTCTTGT-C-ATGAGCAAGTAAAATAGTAAAA---ACG-CTC-ATATGG--TAAATTCAA-TTCTAATATCAT-TTTGTTTTACGCAGTAATCAAAGTTTTTGTCATGTCTCCGCAGTGAAAAAAAGCGGCNTACATTTTGCCCATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCGTTCCTTACATTC--GCAGATTAAGT----T-T----------------------A-CTAA----ANTG-GTATATA------GTTAATTTCCTAATCG-GTAGTTTAGTGGATTGCAACCTTACAATAA--AT-CAGTAAATA-TTA-ACATG-TTGTAAGTA-TT-TAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAANATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TNGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACNCCGTGTG-NCG-TTTG--A-T---T--ATA-CA----GCGAACACTGTG-T-AA--T-AT--CTA--C----GAG-G--GAATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAA--TAAGTG--TTGAC-GACTCTG-ATAATACTTTGGTGTGA
gi|1 : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCA-----CCAA-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACAACGTTG----TTT-AAC-GTTGAGGGTTTATAAATTGTATA-TAAAATATATGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAA--TATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTG----AAAAAGCGGCTTAC-TTTTGCCCATAACT-AAAGTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT---CAACGGTTTC-AGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAA--AATTTCAACCCCGT-TTGTATTTTACAAACGTTGGAGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTTATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATAA---TACGCTTCATATGGTAA-TTCAATTCTA-TATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCAT-GTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGG-AAAAG-TCAGTT-TTGTCC-ATGAGCAAGTAAAATA-T---A---ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCTTACATTC--ACAGATTAAGT----T-T----------------------A-CTAA----ACTG-GTATATA------GTTAATTGTCTAATCGTATAGTTTGGTGGATTGCAACCTTACAATAA--ATGCGGTAAATACTTA-ACATG-TTGTAAGTA-TTATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAA--TAAT--ATA--T----GAG-G--GAA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAA--ATAGTG--TTGAC-GACTCTGAATAAAACTTGGATATGA
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATT-------------T----C-T----------------------A-CATA----GCTG-GTATATA------GTTAATTTCCTAAACG-GTAGCTTAGT-GATTGC-ATCTTACAA-----------TAAGCA-TTA-----G-TTATGAATA-----------------------------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--A-T---CG-ATA-CA----GCGAACGCTGTG-T-AA--T-----CTA--CCCGAGGG-G--GAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAA--tagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgACG---TTGAAACCTC----AACGTGAAAAGATCTAACGTTG-GAACAACG--TTGAA----GT-TTG-G-TTGATCAACGT---A-----CACA-ACCATATTTCAACGTTGCTTCA---ACGTTGAAG
gi|12 : cagcggcaAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT--TC---CAACG---TT-AGATCTTTTCA--CGTTGA-GGTTTCAACGT------GT--A--TCCGT---CGTGTTG-ATTT-ACAA-CGTTG-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TTATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCCA-TATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCAT-GTCgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgttgTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-T-AA--T-CT--ATA--T----GAGAG--GAAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAA--TAAGTG--TTGAC-GACTCTG-----TACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--------T-AT--CTA--CCTGAGAG-G--GAATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAA--GAAATG--TTGAA-GGCTCTG-----TACATCGGTGCGAactaatgctggaataagtg
gi|15 : cCTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAA--TAAGTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|16 : catatatagtgatgttagaggctggtatgggagagcggtattacagcatatctgcgatatcgtttgacaattagaactatacagcgaacactgttatctacctgagagggaatcctctgtgtacagtgatcggcaacgctgaagaaatgttgaaggT-TAGTTAATG-TCA-GT-TC-TTGTAAGTAGTT-TAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TTC-----T---T--------------GAAC-----G-T-AA---------CA--C----GA---------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAG--TAATTG--TTagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCTTACATTT--CTAGA
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCTTACATTA--GTTGATTA-GT----T----------------------------AA----AAT----AAATA------GATAATTTCCTACTCG-GTAGTTTAGTG-ATCCCA-CCTTACAATAATTAT-TAGTAAATA-T-------G-TTTTTAGGA------AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGgagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagGTTGAAATATGGTTGTT--ACGTTGATCAATTTACCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTC-AAC-TATGAGGGTTTATAAATTGTATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : TGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCTTACATTA--GCTGATTANNN----N-NNNNNNNNNNNNNNNNNNNNNTAA-TTAAGTAAAATG-ATAAATAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGTGATTTGCAACCTTACAAT-A--AT-CAGTTAATA---A-ACATG-TTGTAAGTA-GTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-T-A-----AT--CTA--CCT--GAGAG--GAATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAA--TAAGTG--TTGAC-AACTCTG-----TACATCGGTGCGA
gi|2 : G--G-T---T--AT--CG----GC-AACGCTGAA-T-AAG-T-GT--TGA--C----AA----------CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAA--TAAGTT--TAGA--AACACTG-Actaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacCCAGCGGGCACTTT-AACGTTG-----AAGCAACGTTGAAATATGGTTG--TTACGTTGATCAA----CCAA---ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTACAACGTTGGAGTGACAACGTTG----TTCTAACAGTTTAGagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : AGTTTAGTG-ATTGCA-CCTTACAAT-A--AT-CAGT-AATA---A-ACATG-tgattgcaccttacaataatcagtaataaacatgg
gi|21 : ccagcgggcactttaacgttgaagcaacgttgaaatatggttgttacgttgatcaaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttacaacgttggagtgacaacgttgttctaacATGTGGCAAGGAATGCCATTTTGT-AA----------------------------------------------------------------------------AGAG--TTATCTTTTCTTACATTA--GCTGATTAAGTAAAATGT----------------------A-C--A----ATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GATTGC-ACCTTACAATAA--g
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT----AA--T-CTGCCTA--A----GAG-G--GAATCCTCT--GTGT-A-CAGTGAT-TGA-C-A-ACTCTGTACCTCAGTG---CGACTAACGCTGAATAAtc
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTGCCCT-TTTG--A--------ATA-CA----GCGAACACTGTA---------AT--CTA--C----gtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTTctga
gi|27 : CGTTGATCAACCAAACTTC-AACGTTGT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCT-----T-GT--CTACCC----GAG-GGAGAACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAA--TAAGTG--TTGAC-GAAT-----TAGTACTTTGGTGTGAttc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACATTGTA---------AT--CTA--CCCGAGAG-G--GAATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAA--TAAGTG--TTGAC-GACTCTG-----TACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : AACGTTGGGAAAAAACAACGTTGAAGTTTGGTTGATCAACGT--AACAA----CCAA-TTTCAACGTTGCTT-----CAACGTTGAAGTctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAATTGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGTTTTTTCCCAACG---TT-AGAC-TTTTCCAAC-TTGA-GGATTCAACGTTAA----------TTCAA---CGG-TTGTATTTCAACAACGTTGTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TTATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---AA---TACGC-TCATATGGTAA-TTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTGAAAA--AAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAA-A---ATATTGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTagacttttccaacttgaggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCTTACATTCCTACAGA
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT----T-T----------------------ATCTAA----AATG-TAATATA------ATTA-TTGTCTAATCG-GTAGTTTAGTG-ATTACA-CCTTACAATTA---T-CAGTA-----TTACACATGGTTGTAAGTA-TTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-T-AATTT-AC--CTG--A----GAG-G--GAATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAA--TAAGTG--TTGAT-GACT-------GTACATCGGTGCGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|6 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAA--TAAGTctaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgaTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACTTACATTA--GTTGATTAAGT---------------------------------AA----AATG--CATATA------GTTAATTTCCTAATCA-GTAGTTT
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCT-----T-AT--CTA--CCGGAGGG-G--GAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAA--TAACTG--TTGAC-GACTATG-----TACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAA--TAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA----ATATG-AC----CA--AGC---T--ACA-C-----GC-AAC-CTGAG-T----------------T----GAA-G--AGATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GAC--AAAGCGCATGGAC-GACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCTTACATTA--GTTGATTA-GT----T----------------------------AA----AATA---AAATA------GATAATTTCCTACTCG-GT-GTTTAGTG-ATCCCA--CTTACAATTA---T-TATTAGATA---A-ATATG-TTTCAGG-------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 1 2222 11111 1111 44444 33333333333333333333333333333333333 2222 1 22 1 11 11 1 1 1 33333 222 1 2 77777777777 222 1 1111 111 222 1 222 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 22 444444 33333333333333 1111 11 11 22222222 2222 3333333 11111 2222 11 333333 11 11 22222222222 555555555555555555555555
lowQualScore : 5 55555 1 0000 6 6 77777 8 5555 33333 55555555555555555555555555555555555 8888 3 22 6 7 88 1 1 6 6 44 3 3 5 0 55555 333 2 8888 3 1 00000000000 333 3 7 7777 666 333 3 7 333 3 88 7 6 7 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 4 9999 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555 44 7 1 0 6 999999 5 33333333333333 0000 5 88 77 5 5 00 88888888 7777 5 1 2222 3 0 5 4 4 1111111 4 1 4 77777 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 66 99 88888888888 3 6666 0 0 777777777777777777777777 6 44 33 2 2 666 2 5 2 44
lowQualScore : . ..... . .... . . ..... . .... ..... ................................... .... . .. . . .. . . . . .. . . . . ..... ... . .... . . ........... ... . . .... ... ... . . ... . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .. . . . . ...... . .............. .... . .. .. . . .. ........ .... . . .... . . . . . ....... . . . ..... .... .. . ...... . .... .. . .. .. . . . . .. .. ........... . .... . . ........................ . .. .. . . ... . . . ..
lowQualScore : 0 00000 2 0000 0 0 88888 0 2222 00000 00000000000000000000000000000000000 3333 3 77 0 3 33 0 0 7 7 33 3 2 5 0 77777 333 0 3333 7 0 00000000000 333 3 3 3333 777 333 3 3 333 3 33 3 7 3 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 33 3 0 4 2 000000 0 99999999999999 6666 0 00 00 7 0 99 00000000 7777 7 4 9999 0 1 0 4 4 8888888 4 1 4 55555 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 77 11 00000000000 1 5555 2 8 888888888888888888888888 7 66 99 9 9 888 9 7 9 22
consensus : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAATNTGGTTGNTCNACGTTGATCAA----CCA-A-CTTCAACGTTGCTT-----CAACGTTGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTACAACGTTGGAGTGACAACGTTG----TTC-AAC--TGAGGGTTTATAAATTGTATA-TAAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTGA-GGTTTCAACGTT-----GAA--TTCGA---CGT-TTGTATTTCAC-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TTATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCTTACATTAGCTGATTAAGTTTA---A-AAATG------TA------TA----TAGTTAATTTCCTAATCG-GTAGTTTAGTGGATTGCAACCTTACAAT-AAT-CAGTAAATA-TTA-ACATG-TTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAACA-----CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-TA-TTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-T-AA--T-AT--CTA--CC---GAG-G--GAATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAATATGGTTGTTTTACGTTGATCAA----CCA-A-CTNCAACGTTGCTTNNNNNCAACGTTGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTACAACGTTGGAGTGACAACGTTG----TTC-AACGTTGAGGGTTTATAAATTGTATAATAAAATATAT--GTGATNAANACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAAN-TGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTGAAGGNTTCAACGTTGAGAANAA--TTCAA---CGT-TTGTATTTNACNAACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TTATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAATATATANACTGGGAAAAAGATCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCTTACATTAGCTGATTAAGTTTAC--A-AAATG-----GTA------TA----TAGTTAATTTCCTAATCG-GTAGTTTAGTGGATTGCAACCTTACAAT-AAT-CAGTAAATA-TTA-ACATG-TTGTAAGTATTATAANTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAACA-----CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-TA-TTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-T-AA--T-AT--CTA--C----GAG-G--GAATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCA-----CCA-A-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACAACGTTG----TTT-AACGTTGAGGGTTTATAAATTGTATA-TAAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACT-AAAG-TGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTACAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTTATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCTTACATTCACAGATTAAGTTTACT-A-AACTG-----GTA------TA----TAGTTAATTGTCTAATCGTATAGTTTGGTGGATTGCAACCTTACAATAAATGCGGTAAATACTTA-ACATG-TTGTAAGTATTATAATTGGTT----A-ATTA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGCA-----CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATTA-TTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAA--TAAT--ATA--T----GAG-G--GAA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCC------TAGC--ATT---TCTAC--ATAGCTG-----GTA------TA----TAGTTAATTTCCTAAACG-GTAGCTTAGT-GATTGC-ATCTTACAAT-AAG-C-------A-TTA-----G-TTATGAATA----------------------------TATAGGTCCGGTA-TATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-T-AA--T-----CTA--CCCGAGGG-G--GAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgAACGTTG-----GAACAACGTTGAAGTTTGGTTGATCAACGTACA-CAA----CCATA-TTTCAACGTTGCTT-----CAACGTTGAAGT
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTGA-GGTTTCAACGT------GTA--TCCGT---CGTGTTG-ATTT-AC-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TTATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCagatcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAACA-----CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-T-AA--T-CT--ATA--T----GAGAG--GAAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-TA-T-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--------T-AT--CTA--CCTGAGAG-G--GAATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|15 : cCTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|16 : catatatagtgatgttagaggctggtatgggagagcggtattacagcatatctgcgatatcgtttgacaattagaactatacagcgaacactgttatctacctgagagggaatcctctgtgtacagtgatcggcaacgctgaagaaatgttgaaggT-TAGTTAATG-TCA-GT-TC-TTGTAAGTAGTTTAAGTGGTTTC-GATA-T-------TATAGGCTCAGTA-TATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAATA-----CCAG--GTGATTGGTTATGGCAGAGCTGC----A-TA-TTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-T-AA---------CA--C----GA---------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCTTACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCTTACATTAGTTGATTA-GTT-----A-AAAT--------A------AA----TAGATAATTTCCTACTCG-GTAGTTTAGTG-ATCCCA-CCTTACAAT-AAT-TATTAG-TA---A-ATATG-TTTTTAGGA-----AGTGATTTT-GA-A-TACTAGAATATAAGACCAGTA-TATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAACAC----CCAGATTGGGTCTA------CAGAGTAACATATA--A---ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagGTTGAAATATGGTTGTT--ACGTTGATCAATTTACCA-AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTC-AACTATGAGGGTTTATAAATTGTATAATAAAATATAT--GTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : TGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCTTACATTAGCTGATTA
gi|2 : TAATTAAGT------A-AAATG-----ATAAATAGTTA----TAGTTAATTTCCTAAACG-GTAGTTTAGTGATTTGCAACCTTACAAT-AAT-CAGTTAATA---A-ACATG-TTGTAAGTAGTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAACTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-T-AA--T-----CTA--CCT--GAGAG--GAATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGAnnnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaactctgtacatcggtgcgactaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnnCCAGCGGGCACTTT-AACGTTG-----AAGCAACGTTGAAATATGGTTG--TTACGTTGATCAA----CCA-A---ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTACAACGTTGGAGTGACAACGTTG----TTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA----------------------------------------------------------------------------AGAG--TTATCTTTTCTTACATTAGCTGATTAAGT------A-AAATGTACAATTA------TACATGTAGTTAATTGTCTAATCG-GTATTTTAGT-GATTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT----AA--T-CTGCCTA--A----GAG-G--GAATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTGCCCT-TTTG--A--------ATA-CA----GCGAACACTGTA---------AT--CTA--C----ctaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-TA-T---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTTctga
gi|27 : CGTTGATCAACCAAACTTC-AACGTTGT-TT
gi|3 : -A-TG------TATAGATCCAGTA-TATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAACA-----CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCT-----T-GT--CTACCC----GAG-GGAGAACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-TA-T---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACATTGTA---------AT--CTA--CCCGAGAG-G--GAATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : AACGTTGGGAAAAAACAACGTTGAAGTTTGGTTGATCAACGT--AACAA----CCA-A-TTTCAACGTTGCTT-----CAACGTTGAAGTctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTGA-GGATTCAACGTT------AA--TTCAA---CGG-TTGTATTTCAACAACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TTATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTagacttttccaacttgaggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCTTACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGTTTATCTA-AAATG-----TAA------TA----TAATTA-TTGTCTAATCG-GTAGTTTAGTG-ATTACA-CCTTACAAT-TAT-CAGTA-----TTACACATGGTTGTAAGTATTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGCA-----CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-T-AATTT-AC--CTG--A----GAG-G--GAATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACTTACATTAGTTGATTAAGT------A-AAATG------CA------TA----TAGTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCT-----T-AT--CTA--CCGGAGGG-G--GAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA----ATATG-AC----CA--AGC---T--ACA-C-----GC-AAC-CTGAG-T----------------T----GAA-G--AGATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCTTACATTAGTTGATTA-GTT-----A-AAATA-------A------AA----TAGATAATTTCCTACTCG-GT-GTTTAGTG-ATCCCA--CTTACAAT-TAT-TATTAGATA---A-ATATG-TTTCAGG------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAACA-----CCAGATTGGGTCTACAGA-GTAA------ATATA--A---ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222 1 11 1111 111 333333333333333333333333333333333333 222 4444444 1 333 22 1 22 1 2 1 1 22222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 99999999999999999999999999999999999999999999999999999999 111111 2 1 3333333333 33333 2222222 11111 2222 11 333333 11 11 22222222222 555555555555555555 111
lowQualScore : 5 55555 0 1 11 3333 3 8 444 0 888888888888888888888888888888888888 000 6666666 7 3 999 77 33 3 5 77 5 2 0 0 0 0 0 8 77777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555 2222 1 66666666 77777777777777777777777777777777777777777777777777777777 88 444444 5 0 9 77 5 0 8888888888 11 5 0 3 44444 3 0 5 4 4 9999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 66 99 88888888888 3 6666 0 0 666666666666666666 88888 44 33 2 5 000 2 8 2 44
lowQualScore : . ..... . . .. .... . . ... . .................................... ... ....... . . ... .. .. . . .. . . . . . . . . ..... ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ........................................................ .. ...... . . . .. . . .......... .. . . . ..... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . .. .. ........... . .... . . .................. ..... .. .. . . ... . . . ..
lowQualScore : 0 00000 8 0 00 0000 2 0 000 2 000000000000000000000000000000000000 777 0000000 3 3 000 00 00 0 5 55 0 5 0 0 8 8 6 0 00000 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 22222222222222222222222222222222222222222222222222222222 66 444444 0 9 0 66 0 7 4444444444 99 7 7 6 11111 0 4 0 4 4 1111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 77 11 00000000000 1 5555 2 8 777777777777777777 00000 66 77 7 3 000 7 0 7 22
consensus : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAGTTTGGTTGNTCAACGTTGATCAACCA-A---CTTCAACGTTGCTTCAACGTTGAAGTTGGTTGTTACGTTGATCAACCAAACTTCAACGTTGNTTTT--NCAACGTTGGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANNGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-T----------A-TATA------GTTAATTTCCTAATCG-GTAGTTTAGTG-ATTGCAACCTTACAAT-AAT-CAGTAAATA-T-A-ACATG-TTGTAAGTA-T-ATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-T-A-T-ATCTA-CC--AGA---G-G--GAATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAATNTGGTTGNTCNACGTTGATCAACCA-A---CTTCAACGTTGCTTCAACGTTGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTATAAATTGTATA-TAAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-T----------A-TATA------GTTAATTTCCTAATCG-GTAGTTTAGTGGATTGCAACCTTACAAT-AAT-CAGTAAATA-TTA-ACATG-TTGTAAGTA-T-ATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-T-AAT-ATCTA-CC---GA---G-G--GAATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTG-----AAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCA-CCA-A---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATA-TAAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACT-AAAG-TGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-T----------A-TATA------GTTAATTGTCTAATCGTATAGTTTGGTGGATTGCAACCTTACAATAAATGCGGTAAATACTTA-ACATG-TTGTAAGTATT-ATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAATATA--T---GA---G-G--GAA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-T----------A-TATA------GTTAATTTCCTAAACG-GTAGCTTAGTG-ATTGCA-TCTTACAA-----------------------------TAAGCA-T------TAGTTAT-GA-A-TA------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-T-AAT---CTA-CCCGAGG---G-G--GAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgAACGTTG-----GAACAACGTTGAAGTTTGGTTGATCAACGTACA-CAACCATA---TTTCAACGTTGCTTCAACGTTGAAGT
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCagatcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-T-AAT-CTATA--T---GA---GAG--GAAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT------T-ATCTA-CCTGAGA---G-G--GAATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|15 : cCTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|16 : catatatagtgatgttagaggctggtatgggagagcggtattacagcatatctgcgatatcgtttgacaattagaactatacagcgaacactgttatctacctgagagggaatcctctgtgtacagtgatcggcaacgctgaagaaatgttgaaggT-TAGTTAATG-TCA-GT-TC-TTGTAAGTAGT-TTAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-T-AAC-A------C---GA------------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----T----------A-AATA------GATAATTTCCTACTCG-GTAGTTTAGTG-ATCCCA-CCTTACAAT-AAT-TATTAG-TA---A-ATATG-TTTTTAGGA------AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GAT----------A-AATAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGTGATTTGCAACCTTACAAT-AAT-CAGTTAATA---A-ACATG-TTGTAAGTAGT-ATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-T-A---ATCTA-CCT--GA---GAG--GAATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTG-----AAGCAACGTTGAAATATGGTTGTT--ACGTTGATCAACCA-AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGA-----GTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA----------------------------------------------------------------------------AGAG--TTATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TACAATTATACA-TGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GATTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGTA-------ATCTG-CCTAAGA---G-G--GAATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTGCCCT-TTTG--A--------ATA-CA----GCGAACACTGTA-------ATCTA-CC---ctaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTTtga
gi|27 : CGTTGATCAACCAAACTTC-AACGTTGT-TT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCT---T-GTCTACCC---GA---G-GGAGAACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACATTGTA-------ATCTA-CCCGAGA---G-G--GAATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : AACGTTGGGAAAAAACAACGTTGAAGTTTGGTTGATCAACGT--AACAACCA-A---TTTCAACGTTGCTTCAACGTTGAAGTctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggcc-A---CTTCAACGTTGAAGCAACGTTGAAATTGGTTGTTACGTTGATCAACCAAACTTCAACGTTGTTTTTTCCCAACGTTA---------GAC----TTTTCC-AACT-TGAGGATTCAagacttttccaacttgaggattcaacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTacgttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-T----------AATATA------ATTA-TTGTCTAATCG-GTAGTTTAGTG-ATTACA-CCTTACAAT-TAT-CAGTA-----TTACACATGGTTGTAAGTA-TTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-T-A---ATTTA-CCTGAGA---G-G--GAATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-C----------A-TATA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCT---T-ATCTA-CC---GGAGGG-G--GAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA----ATATG-AC----CA--AGC---T--ACA-C-----GC-AAC-CTGAG-T------------T---GA---A-G--AGATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-A----------A--ATA------GATAATTTCCTACTCG-GT-GTTTAGTG-ATCCCA--CTTACAAT-TAT-TATTAGATA---A-ATATG-TTTCAGG-------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 11 4444444444 111 4444444 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 888888888888888888888888888888888888888888888888888888888888 111111 11 444444444444 333333 2222222222222 11111 2222 11 333333 11 11 22222222222 333 222 111
lowQualScore : 5 0 7 1 00 0 3 33 8 9999999999 0 1 999 6666666 7 3 999 22 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 1 66666666 999999999999999999999999999999999999999999999999999999999999 444444 5 5 5 77 5 5 444444444444 5 4 222222 1 0 5 4 4 9999999999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 66 99 88888888888 3 6666 0 0 111 3 666 6 44 44 33 2 5 000 2 8 2 44
lowQualScore : . . . . .. . . .. . .......... . . ... ....... . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ............................................................ ...... . . . .. . . ............ . . ...... . . . . . ............. . . . ..... . .... .. . ...... . .... .. . .. .. . . . . .. .. ........... . .... . . ... . ... . .. .. .. . . ... . . . ..
lowQualScore : 0 7 3 0 00 2 2 22 0 0000000000 2 0 333 0000000 3 3 000 00 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 888888888888888888888888888888888888888888888888888888888888 444444 0 7 7 00 7 7 888888888888 7 3 111111 0 1 0 4 4 1111111111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 77 11 00000000000 1 5555 2 8 888 1 888 7 66 66 77 7 3 000 7 0 7 22
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATTTGGTTGTTCAACGTTGATCA-ACCA-A----------CTTCAACGTTGCTTCAACGTTGAAGTTGGTTGTTACGTTGATCAACCAAACTTCAACGTTGTTTTT--NCAACGTTGGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CAGTAAATA---A-ACATG-TTGTAAGTA-T-ATAANTGGTTTT-GA-A-T------A------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTGTA-AT-CTACC--NGAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAGTTTGGTTGNTCAACGTTGATCA-ACCA-A----------CTTCAACGTTGCTTCAACGTTGAAGTTGGTTGTTACGTTGATCAACCAAACTTCAACGTTGNTTTT--NCAACGTTGGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANNGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTTCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CAGTAAATA--TA-ACATG-TTGTAAGTA-T-ATAANTGGTTTT-GA-A-T------A------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTGTATAT-CTACC--AGAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATT-GGTTGTTTTACGTTGATCA--CCA-A----------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-TA-TA----------TA------GTTAATTGTCTAATCGTATAGTTTGGTGGA-TTGCAACCTTACAATAAATGCGGTAAATACTTA-ACATG-TTGTAAGTATT-ATAATTGGTT----A-ATT------A------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTGTAAATAATATA--TGAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-TA-TA----------TA------GTTAATTTCCTAAACG-GTAGCTTAGT-GA-TTGC-ATCTTACAAT-AAG-CA------------------TT---AGT--T-ATGAAT-------------------A------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTGTA-AT-CTACCCGAGGG-G--G--AATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgAACGTTGGAACAACGTTGAAGTTTGGTTGATCAACGTACA-CA-ACCATA----------TTTCAACGTTGCTTCAACGTTGAAGT
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCagatcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-T------A------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTGTA-AT-CTATA--TGAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT---TAT-CTACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|15 : cTTATTCAGCGTTAGTCGCACCG-ATGTACAGAGCCTTCAACATTTCTTCAGCGTTGctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|15 : catatatagtgatgttagaggctggtatgggagagcggtattacagcatatctgcgatatcgtttgacaattagaactatacagcgaacactgttatctacctgagagggaatcctctgtgtacagtgatcggCTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTG--TTgtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|16 : catatatagtgatgttagaggctggtatgggagagcggtattacagcatatctgcgatatcgtttgacaattagaactatacagcgaacactgttatctacctgagagggaatcctctgtgtacagtgatcggcaacgctgaagaaatgttgaagg-TTGTAAGTAGT-TTAAGTGGTTTC-GATA-T-------------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----GTA------ACA--CGA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----TA-AA----------TA------GATAATTTCCTACTCG-GTAGTTTAGT-GA-TCCCA-CCTTACAAT-AAT-TATT-AGTA---A-ATATG-TTTTTAG------GAAGTGATTTT-GA-A-TACTAGAA------TATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GATA-AA----------TAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGCAACCTTACAAT-AAT-CAGTTAATA---A-ACATG-TTGTAAGTAGT-ATAATTGGTTTT-GA-A-T-------------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTGTA-AT-CTACC--TGAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTGTT--ACGTTGATCA-ACCA-AACN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGA-----GTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A--------------------------------------------------GAG-TT-ATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TA-CAATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GA-TTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGTA---AT-CTGCCTAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTGCCCT-TTTG--A--------ATA-CA----GCGAACACTGTA---AT-CTACC--TGActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGTTT
gi|3 : -A-T------G------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGT-CTACC--CGAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTGA-A-C---G--GTA-CA----GCGAACATTGTA---AT-CTACCCGAGAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : -A----------CTTCAACGTTGAAGCAACGTTGAAATTGGTTGTTACGTTGATCAACCAAACTTCAACGTTGTTTTTTCCCAACGTTA---------GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-TAATA----------TA------ATTA-TTGTCTAATCG-GTAGTTTAGT-GA-TTACA-CCTTACAAT-TAT-CAGTA--T---TACACATGGTTGTAAGTA-TTATAATTGGTTTT-GA-A-T------A------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTGTA-AT-TTACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-CA-TA----------TA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTAT-CTACC--GGAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA----ATATG-AC----CA--AGC---T--ACA-C-----GC-AAC-CTGAGT------T------GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-AA--A----------TA------GATAATTTCCTACTCG-GT-GTTTAGT-GA-TCCCA--CTTACAAT-TAT-TATTAGATA---A-ATATG-TTTCAGG-------AAGTGATTTTTGA-A-T------ACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 11 33333333333333333 111 1 1 111 111 33333333 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 888888888888888888888888888888888888888888888888888888888888 111111 11 11111111 333333 2222222 11111 2222 11 333333 11 11 22222222222 11111
lowQualScore : 5 99 99 66666666666666666 444 3 0 0 555 444 00000000 7 3 999 44 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 1 66666666 999999999999999999999999999999999999999999999999999999999999 444444 5 5 5 77 5 5 2 66666666 6 1 666666 3 0 5 4 4 9999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 888888 66666666666 3 6666 4 6 44 3 77777 6 44 99 33 2 2 666 2 5 2 44
lowQualScore : . .. .. ................. ... . . . ... ... ........ . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ............................................................ ...... . . . .. . . . ........ . . ...... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . ...... ........... . .... . . .. . ..... . .. .. .. . . ... . . . ..
lowQualScore : 0 55 77 00000000000000000 444 5 0 0 888 888 55555555 3 3 000 77 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 888888888888888888888888888888888888888888888888888888888888 444444 0 7 7 00 7 7 5 88888888 7 7 777777 0 1 0 4 4 1111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 666666 11111111111 1 5555 2 2 22 1 99999 7 66 22 99 9 9 888 9 7 9 66
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATNTGGTTGTTC-ACGTTGATCG-ACC-GA----------CTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACC--C--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATTTGGTTGTTCAACGTTGATCA-ACC-AA----------CTTCAACGTTGCTTCAACGTTGAAGT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--NCAACGTTGGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CAGTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCG-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACC--N--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATT-GGTTGTTTTACGTTGATCA--CC-AA----------CNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-TA-TA----------TA------GTTAATTGTCTAATCGTATAGTTTGGTGGA-TTGCAACCTTACAATAAATGCGGTAAATACTTAACAT-GTTGTAAGTATTATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAAT-ATA--T--GAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-TA-TA----------TA------GTTAATTTCCTAAACG-GTAGCTTAGT-GA-TTGC-ATCTTACAAT-AAG-CATTA-------------GTTAT--------------------GA-A-TA------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-TAATC--T-ACC--C--GAG-G--GGGAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgA----------CTTCAACGTTGAAGCAACGTTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAACGTTG-----TT--CCAACGTTAGA-----
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCtcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-TAATC--T-ATA--T--GAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--T-ATC--T-ACCTGA--GAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|15 : cTTATTCAGCGTTAGTCGCACC-GATGTACAGAGCCTTCAACATTTCTTCAGCGTTGctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|16 : catatatagtgatgttagaggctggtatgggagagcggtattacagcatatctgcgatatcgtttgacaattagaactatacagcgaacactgttatctacctgagagggaatcctctgtgtacagtgatcggTTGTAAGTAGTTTAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-TA-------ACA--C--GA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTgtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----TA-AA----------TA------GATAATTTCCTACTCG-GTAGTTTAGT-GA-TCCCA-CCTTACAAT-AAT-TATTAG-TA---AATAT-GTTTTTAGGA-----AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GATA-AA----------TAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGCAACCTTACAAT-AAT-CAGTTAATA---AACAT-GTTGTAAGTAGTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-TAATC--T-ACC--T--GAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTGTT--ACGTTGATCA-ACCAAA----------CNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGA-----GTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A--------------------------------------------------GAG-TT-ATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TA-CAATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GA-TTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT---AATC--T-GCC--TAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTGCCCT-TTTG--A--------ATA-CA----GCGAACAC--TG-TAATC--T-ACC--T--GActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGT--TT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGTC--T-ACC--C--GAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACAT--TG-TAATC--T-ACCCGA--GAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : A----------CTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTTTCCCAACGTTA---------GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-TAATA----------TA------ATTA-TTGTCTAATCG-GTAGTTTAGT-GA-TTAC-ACCTTACAAT-TAT-CAGT-ATTA---CACATGGTTGTAAGTATTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-TAATT--T-ACCTGA--GAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-CA-TA----------TA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTATC--T-ACC--G--GAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA------------A-TATG--A-C---C--A----A----GCTA-CAC---G-CAACC--TGAGT--T--GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-AA--A----------TA------GATAATTTCCTACTCG-GT-GTTTAGT-GA-TCCCA--CTTACAAT-TAT-TATTAGATA---AATAT-GTTTCAGG------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 44 2 1 1 1 111 11 2222222 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 888888888888888888888888888888888888888888888888888888888888 111111 11 11111111 333333 2222222 11111 2222 11 333333 11 11 22222222222 111
lowQualScore : 5 0 33 3 6 0 0 0 555 33 9999999 7 3 999 44 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 1 66666666 999999999999999999999999999999999999999999999999999999999999 444444 5 5 5 77 5 5 1 66666666 6 1 666666 3 0 5 4 4 9999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 444 5 66666666666 3 6666 4 6 44 3 888 6 44 99 33 2 2 666 2 5 2 44
lowQualScore : . . .. . . . . . ... .. ....... . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ............................................................ ...... . . . .. . . . ........ . . ...... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . ... . ........... . .... . . .. . ... . .. .. .. . . ... . . . ..
lowQualScore : 0 5 00 0 0 0 0 0 888 88 8888888 3 3 000 77 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 888888888888888888888888888888888888888888888888888888888888 444444 0 7 7 00 7 7 0 88888888 7 7 777777 0 1 0 4 4 1111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 999 7 11111111111 1 5555 2 2 22 1 777 7 66 22 99 9 9 888 9 7 9 66
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCAACCAA-CTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATNTGGTTGTTC-ACGTTGATCGACCGA-CTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATC-ACCAA-CNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-TA-TA----------TA------GTTAATTGTCTAATCGTATAGTTTGGTGGA-TTGCAACCTTACAATAAATGCGGTAAATACTTAACAT-GTTGTAAGTATTATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAAT-ATAT--GAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-TA-TA----------TA------GTTAATTTCCTAAACG-GTAGCTTAGT-GA-TTGC-ATCTTACAAT-AAG-CATTA-------------GTTAT--------------------GA-A-TA------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-TAATC--T-ACCC--GAG-G--GGGAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgA-CTTCAACGTTGAAGCAACGTTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAACGTTG-----TT--CCAACGTTAGA-----
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCtcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-TAATC--T-ATAT--GAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--T-ATC--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|16 : cTTGTAAGTAGTTTAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-TA-------ACAC--GA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----TA-AA----------TA------GATAATTTCCTACTCG-GTAGTTTAGT-GA-TCCCA-CCTTACAAT-AAT-TATTAG-TA---AATAT-GTTTTTAGGA-----AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GATA-AA----------TAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGCAACCTTACAAT-AAT-CAGTTAATA---AACAT-GTTGTAAGTAGTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-TAATC--T-ACCT--GAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTGTT--ACGTTGATCAACCAAACNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGA-----GTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A--------------------------------------------------GAG-TT-ATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TA-CAATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GA-TTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT---AATC--T-GCCTAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTG-CCCTTTTG--A--------ATA-CA----GCGAACAC--TG-TAATC--T-ACCT--GActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGT--TT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGTC--T-ACCC--GAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACAT--TG-TAATC--T-ACCCGAGAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : A-CTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTTTCCCAACGTTA---------GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-TAATA----------TA------ATTA-TTGTCTAATCG-GTAGTTTAGT-GA-TTAC-ACCTTACAAT-TAT-CAGT-ATTA---CACATGGTTGTAAGTATTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-TAATT--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-CA-TA----------TA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTATC--T-ACCG--GAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA------------A-TATG--A-C---C--A----A----GCTA-CAC---G-CAACC--TGAGTT--GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-AA--A----------TA------GATAATTTCCTACTCG-GT-GTTTAGT-GA-TCCCA--CTTACAAT-TAT-TATTAGATA---AATAT-GTTTCAGG------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 2 1 1 111 11 2222222 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 888888888888888888888888888888888888888888888888888888888888 111111 11 11111111 333333 2222222 11111 2222 11 333333 11 11 22222222222 111
lowQualScore : 5 5 88 5 0 0 0 555 33 9999999 7 3 999 44 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 1 66666666 999999999999999999999999999999999999999999999999999999999999 444444 5 5 5 77 5 5 1 66666666 6 1 666666 3 0 5 4 4 9999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 444 5 66666666666 3 6666 4 6 44 3 888 6 44 99 33 2 2 666 2 5 2 44
lowQualScore : . . .. . . . . ... .. ....... . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ............................................................ ...... . . . .. . . . ........ . . ...... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . ... . ........... . .... . . .. . ... . .. .. .. . . ... . . . ..
lowQualScore : 0 5 55 5 0 0 0 888 88 8888888 3 3 000 77 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 888888888888888888888888888888888888888888888888888888888888 444444 0 7 7 00 7 7 0 88888888 7 7 777777 0 1 0 4 4 1111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 999 7 11111111111 1 5555 2 2 22 1 777 7 66 22 99 9 9 888 9 7 9 66
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCAACC-AACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGA-----GTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCA-CC-AACNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-TA-TA----------TA------GTTAATTGTCTAATCGTATAGTTTGGTGGA-TTGCAACCTTACAATAAATGCGGTAAATACTTAACAT-GTTGTAAGTATTATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAAT-ATAT--GAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-TA-TA----------TA------GTTAATTTCCTAAACG-GTAGCTTAGT-GA-TTGC-ATCTTACAAT-AAG-CATTA-------------GTTAT--------------------GA-A-TA------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-TAATC--T-ACCC--GAG-G--GGGAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgACTTCAACGTTGAAGCAACGTTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAACGTTG-----TT--CCAACGTTAGA-----
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCtcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-TAATC--T-ATAT--GAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--T-ATC--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|16 : cTTGTAAGTAGTTTAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-TA-------ACAC--GA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----TA-AA----------TA------GATAATTTCCTACTCG-GTAGTTTAGT-GA-TCCCA-CCTTACAAT-AAT-TATTAG-TA---AATAT-GTTTTTAGGA-----AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GATA-AA----------TAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGCAACCTTACAAT-AAT-CAGTTAATA---AACAT-GTTGTAAGTAGTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-TAATC--T-ACCT--GAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTG--TTACGTTGATCAACCAAACNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGA-----GTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A--------------------------------------------------GAG-TT-ATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TA-CAATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GA-TTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT---AATC--T-GCCTAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTG-CCCTTTTG--A--------ATA-CA----GCGAACAC--TG-TAATC--T-ACCT--GActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGT--TT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGTC--T-ACCC--GAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACAT--TG-TAATC--T-ACCCGAGAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : ACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTTTCCCAACGTTA---------GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACA-TTTGCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-TAATA----------TA------ATTA-TTGTCTAATCG-GTAGTTTAGT-GA-TTAC-ACCTTACAAT-TAT-CAGT-ATTA---CACATGGTTGTAAGTATTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-TAATT--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-CA-TA----------TA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTATC--T-ACCG--GAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA------------A-TATG--A-C---C--A----A----GCTA-CAC---G-CAACC--TGAGTT--GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-AA--A----------TA------GATAATTTCCTACTCG-GT-GTTTAGT-GA-TCCCA--CTTACAAT-TAT-TATTAGATA---AATAT-GTTTCAGG------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 333 1 1 111 11 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 888888888888888888888888888888888888888888888888888888888888 111111 11 11111111 333333 2222222 11111 2222 11 333333 11 11 22222222222 111
lowQualScore : 5 5 88 555 0 0 555 33 5 7 3 999 44 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 1 66666666 999999999999999999999999999999999999999999999999999999999999 444444 5 5 5 77 5 5 1 66666666 6 1 666666 3 0 5 4 4 9999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 444 5 66666666666 3 6666 4 6 44 3 888 6 44 99 33 2 2 666 2 5 2 44
lowQualScore : . . .. ... . . ... .. . . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ............................................................ ...... . . . .. . . . ........ . . ...... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . ... . ........... . .... . . .. . ... . .. .. .. . . ... . . . ..
lowQualScore : 0 5 55 000 0 0 888 88 2 3 3 000 77 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 888888888888888888888888888888888888888888888888888888888888 444444 0 7 7 00 7 7 0 88888888 7 7 777777 0 1 0 4 4 1111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 999 7 11111111111 1 5555 2 2 22 1 777 7 66 22 99 9 9 888 9 7 9 66
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCA---ACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-TA-TA----------TA------GTTAATTGTCTAATCGTATAGTTTGGTGGA-TTGCAACCTTACAATAAATGCGGTAAATACTTAACAT-GTTGTAAGTATTATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAAT-ATAT--GAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-TA-TA----------TA------GTTAATTTCCTAAACG-GTAGCTTAGT-GA-TTGC-ATCTTACAAT-AAG-CATTA-------------GTTAT--------------------GA-A-TA------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-TAATC--T-ACCC--GAG-G--GGGAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgACTTCAACGTTGAAGCAACGTTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAACGTTG-----TT--CCAACGTTAGA
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCtcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-TAATC--T-ATAT--GAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--T-ATC--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|16 : cTTGTAAGTAGTTTAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-TA-------ACAC--GA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----TA-AA----------TA------GATAATTTCCTACTCG-GTAGTTTAGT-GA-TCCCA-CCTTACAAT-AAT-TATTAG-TA---AATAT-GTTTTTAGGA-----AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GATA-AA----------TAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGCAACCTTACAAT-AAT-CAGTTAATA---AACAT-GTTGTAAGTAGTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-TAATC--T-ACCT--GAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTG--TTACGTTGATCA---ACCAAACNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGAGTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A--------------------------------------------------GAG-TT-ATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TA-CAATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GA-TTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT---AATC--T-GCCTAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTG-CCCTTTTG--A--------ATA-CA----GCGAACAC--TG-TAATC--T-ACCT--GActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGT--TT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGTC--T-ACCC--GAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACAT--TG-TAATC--T-ACCCGAGAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : ACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTTTCCCAACGTTA----GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-TAATA----------TA------ATTA-TTGTCTAATCG-GTAGTTTAGT-GA-TTAC-ACCTTACAAT-TAT-CAGT-ATTA---CACATGGTTGTAAGTATTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-TAATT--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-CA-TA----------TA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTATC--T-ACCG--GAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA------------A-TATG--A-C---C--A----A----GCTA-CAC---G-CAACC--TGAGTT--GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-AA--A----------TA------GATAATTTCCTACTCG-GT-GTTTAGT-GA-TCCCA--CTTACAAT-TAT-TATTAGATA---AATAT-GTTTCAGG------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222 1 1 111 11 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111111 888888888888888888888888888888888888888888888888888888888888 111111 11 11111111 333333 2222222 11111 2222 11 333333 11 11 22222222222 111
lowQualScore : 5 5 88 000 0 0 555 33 5 7 3 999 44 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 5 1 0 2222222222222222222222222222222222222222222222222222222222222222222222222222 2222 1 66666666 999999999999999999999999999999999999999999999999999999999999 444444 5 5 5 77 5 5 1 66666666 6 1 666666 3 0 5 4 4 9999999 4 1 4 22222 5 4444 11 0 333333 3 5555 22 3 66 55 4 2 2 5 444 5 66666666666 3 6666 4 6 44 3 888 6 44 99 33 2 2 666 2 5 2 44
lowQualScore : . . .. ... . . ... .. . . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . ............................................................................ .... . ........ ............................................................ ...... . . . .. . . . ........ . . ...... . . . . . ....... . . . ..... . .... .. . ...... . .... .. . .. .. . . . . ... . ........... . .... . . .. . ... . .. .. .. . . ... . . . ..
lowQualScore : 0 5 55 555 0 0 888 88 2 3 3 000 77 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 5 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 0 11111111 888888888888888888888888888888888888888888888888888888888888 444444 0 7 7 00 7 7 0 88888888 7 7 777777 0 1 0 4 4 1111111 4 1 4 55555 0 6666 00 9 333333 1 8888 00 1 55 88 0 9 9 5 999 7 11111111111 1 5555 2 2 22 1 777 7 66 22 99 9 9 888 9 7 9 66
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGT-------------------------TTACT-A---AACTGG-TA-TA----------TA------GTTAATTGTCTAATCGTATAGTTTGGTGGA-TTGCAACCTTACAATAAATGCGGTAAATACTTAACAT-GTTGTAAGTATTATAATTGGTT----A-ATTA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGC-----A-CTAG--TGGATTTATTAC-GTAAAGTTGCA-ATATT-ATTATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAAT-ATAT--GAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TT-GTCGTTCCTAGCATTTCTACAT-AGCTG-----------------------------------------------G-TA-TA----------TA------GTTAATTTCCTAAACG-GTAGCTTAGT-GA-TTGC-ATCTTACAAT-AAG-CATTA-------------GTTAT--------------------GA-A-TA------TATAGGTCCGGT-ATATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-TAATC--T-ACCC--GAG-G--GGGAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgACTTCAACGTTGAAGCAACGTTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAACGTTG-----TT--CCAACGTTAGA
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCtcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAAC-----A-CTAG--T-GATTTATTACGGTGAAG-TGCATATA-----TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-TAATC--T-ATAT--GAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-T-AT-ATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--T-ATC--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|16 : cTTGTAAGTAGTTTAAGTGGTTTC-GATA-T-------TATAGGCTCAGT-ATATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAAT-----A-CCAG--GTGATTGGTTATGGCAGAGCTGC----A-T-ATTATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-TA-------ACAC--GA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAAGGAAAACCATTTTAT-AA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG-TT-GTATTTTCT--------TACATTAGTTGATTAG---------------------------TTA---A---AA-----TA-AA----------TA------GATAATTTCCTACTCG-GTAGTTTAGT-GA-TCCCA-CCTTACAAT-AAT-TATTAG-TA---AATAT-GTTTTTAGGA-----AGTGATTTT-GA-A-TACTAGAATATAAGACCAGT-ATATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAAC-----ACCCAGATTGGGTCTA------CAGAGTAACATATA---A--ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAAGGAATGCCATTTTGT-AAATAGAGTTGTCGTTCTTTACATTCCTA----------------------C--------------------------AGAG-TT-ATCTTTTCT--------TACATTAGCTGATTANNNNNNNNNNNNNNNNNNNNNNNNNTAATTA---AGTAAAAT-GATA-AA----------TAGTTATAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGCAACCTTACAAT-AAT-CAGTTAATA---AACAT-GTTGTAAGTAGTATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAA-CTAG---AGATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-TAATC--T-ACCT--GAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGA
gi|2 : CTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTG--TTACGTTGAT---CAACCAAACNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGAGTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A--------------------------------------------------GAG-TT-ATCTTTTCT--------TACATTAGCTGATTAAGT-------------------------------A---AAAT-G-TA-CAATTATACATGTA------GTTAATTGTCTAATCG-GTATTTTAGT-GA-TTGC-ACCTTACAAT-AAT-C
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT---AATC--T-GCCTAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTG-CCCTTTTG--A--------ATA-CA----GCGAACAC--TG-TAATC--T-ACCT--GActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-T-AT---AG-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGT--TT
gi|3 : -A-TG------TATAGATCCAGT-ATATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAAC-----A-CCA---TTGATTAACTAT-GCAGAGTTGCATATA-----TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGTC--T-ACCC--GAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-T-AT---AG-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACAT--TG-TAATC--T-ACCCGAGAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : ACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTTTCCCAACGTTA----GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAAGGAATGCCA-TTTGTAAA--------------------------A----------------------T--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGT-------------------------TTATCTA---AAAT-G-TAATA----------TA------ATTA-TTGTCTAATCG-GTAGTTTAGT-GA-TTAC-ACCTTACAAT-TAT-CAGT-ATTA---CACATGGTTGTAAGTATTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGC-----A-CTAG--T-GATTTATTAC-GTAAAGTTGCATATA-----TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-TAATT--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------TAGAGTTGTCGTTCTTAACATTTCTAGAGAG-TT-GTCATTACT--------TACATTAGTTGATTAAGT-------------------------------A---AAAT-G-CA-TA----------TA------GTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTATC--T-ACCG--GAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA------------A-TATG--A-C---C--A----A----GCTA-CAC---G-CAACC--TGAGTT--GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaATGTGGCAAGGAATGCCGTTGTGTCAA--------------------------AGGAGTGTCGTTCCTAACATTCCT--------------------------AGAGAGTTGTATTTTCT--------TACATTAGTTGATTA-GT-------------------------T-----A---AAAT-A-AA--A----------TA------GATAATTTCCTACTCG-GT-GTTTAGT-GA-TCCCA--CTTACAAT-TAT-TATTAGATA---AATAT-GTTTCAGG------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAAC-----A-CCAGATTGGGTCTACAGA-GTAA------ATATA---A--ATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
blockSeqs : . A . . A G NNA TC G A T TT GT C T C . CA . ATA G A A TTTTTCC . C NNNN . NNNNNNNNN G N CAAC GT TAA C TG CAA . T . A G A G AAGT . A A G T . . G C A A G G G TG CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . T A T . . . A . AG C CA G AAATAT C . TT . A A ACA A AA . C . A . C A ATAGAGTTGTCGTTCTTTACATTCCTAC AGTT G AGCATTTC NNNNNNNNNNNNNNNNNNNNNNNNNTAATTAAGTAAAATGATAAA GTTATA . . T AA . . T TAATA G A TAGTTT G T T . ACTAGAA A G T AACTA C ATTG CG TAATT T ATT AT C AC AG T G G T TT A ATCTAT A TGTA T C . G TGA A GA GG . G T GTG C T T CA
blockSeqs : . . T . G . . . AC ATA . A . NNN . N AAC . GTATCCGT . T NNN G . . G . . . . A G A . A . . . G . A T C ATAGAGTTGTCGTTCTTAACATTTCTAG TT G . AGTAAAATGTACAATTATACATG . . . . A . . T AGATA . T TAGTAT G . . . ACTAGAA . T . . . ATTG TG TATT . AA AT . T AT T . . A GA T GAACT . . T C . . TAA A . GG . . . GT . T . .
blockSeqs : . . T . . AT . . . TC . . CG . TAATTCAA . . AC N . . T . . . . . . . . AGGAGTGTCGTTCCTAACATTCCT TT T . AGTTTATCTAAAATGTAATA . . . . A . . G AGTA . A TATTAT T . . . A . T . . . GT T TAT . G TG . T AG A . . A GA . ATCG . . T . . . CGA . . . . . . AT . . . .
blockSeqs : . . AT TT T . AGTAAAATGCATA . . . . A . . G ATTA . A GA T . . . A . T . . . TT T TAT . G TG . T A T . . T GT . ACAT . . T . . . TGA . . . . . . AT . . . .
blockSeqs : . AT TT T . GTTAAAATAAAA . . . . A . . T A . A . G . . . G . G . . . T T TAT . T TT . . . T . . A GA . AACG . . T . . . C . . . . . . AT . . . .
blockSeqs : . AT TT G . GTTAAAATAAA . . . . A . . . . . . . . A . G . . . A T T . T CT . . . A . . A GC . AACT . . T . . . T . . . . . . AT . . . .
blockSeqs : . A TT A . GTATA . . . . . . . G . . . T C A . T TG . . . A . . A GA . ATT . . T . . . C . . . . . . GT . . . .
blockSeqs : TT T . . . . . T . A T . T TT . . . A . . T GT . AGC . . T . . . T . . . . . . GA . . . .
blockSeqs : . T . T AA . . . T . . T TT . ACC . . . . . . T . . . . . . AT . . . .
blockSeqs : A . T TT . . . A . . A GA . CT . . . . . . C . . . . . . GT . . . .
blockSeqs : . T TG . . . A . . T AT . A . . . . . . G . . . . . . TA . . . .
blockSeqs : . T AA . . . . . . . A . A . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : TT** A* ANTA**** AT** TAT*** ** GN* ACT******** ** **
originalCons : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAG-TTTGTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCAACCTTACAAT-AAT-CANTAAATA---AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAG--TGGATTTATTAC-GTAAAGTTGCATATA-T-ATTATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
finalCons : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAAGGAATGCCATTTTGT-AA--------------------------A----------------------T--------------------------AGAGTT--GTCNTTCCT--------TACATTAGCTGATTAAGT-------------------------TTA---A---AAAT-G-TA-TA----------TA------GTTAATTTCCTAATCG-GTAGTTTAGT-GA-TTGCA-CCTTACAAT-AAT-CANTANTA----AACAT-GTTGTAAGTA-TATAANTGGTTTT-GA-A-TA------TATAGGCCCAGT-ATATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAAC-----A-CCAGAT--GATTTATTAC-GTAAAGTTGCATATATAT---ATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTGN-CA-TTTGACT--------ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG
Alignments
lowQualScore : 1 1 11 222 1 1 111 11 1 333 1 1 11 1 1 1 22222222 111 1 3333333333333333333 1 11111 111 111 1 111 1 1 11 3333333 1 1 1 1 2222 11 1 1 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 11 11 1 2222 11 1 222 1 333333 1 1 11 1 1 111 1 1 1 55555555555555555555555555 11111111 5555555555555555555555555555555555 111111 11 3333333 2222222 11111 2222 11 11 11 11 22222222222 111
lowQualScore : 5 5 88 000 0 0 555 33 5 7 3 999 44 1 5 1 5 88 5 777 0 3 5 77777777 777 9 7777 0 8888888888888888888 0 5 55555 222 777 0 55 777 0 0 33 3 2 3 6 7777777 3 3 3 6 0 3 3333 88 1 1 5 1 1 1 5 88 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 1 1 1 88 88 5 1 4444 88 5 000 5 000000 5 5 88 5 5 7 666 1 22 5 5 5 1 7 1 5 5 5 88888888888888888888888888 66 1 66666666 2 2222222222222222222222222222222222 5 5 5 5 5 666666 1 6 44 5 0 6666666 3 0 5 4 4 9999999 4 1 4 77777 8888 3 11 44 3 88 3 5555 22 3 66 55 4 2 2 5 444 5 66666666666 3 6666 4 6 44 3 888 6 44 99 33 2 2 666 2 5 2 44
lowQualScore : . . .. ... . . ... .. . . . ... .. . . . . .. . ... . . . ........ ... . .... . ................... . . ..... ... ... . .. ... . . .. . . . . ....... . . . . . . .... .. . . . . . . . .. .................................................................................. . . . . . .. .. . . .... .. . ... . ...... . . .. . . . ... . .. . . . . . . . . . .......................... .. . ........ . .................................. . . . . . ...... . . .. . . ....... . . . . . ....... . . . ..... .... . .. .. . .. . .... .. . .. .. . . . . ... . ........... . .... . . .. . ... . .. .. .. . . ... . . . ..
lowQualScore : 0 5 55 555 0 0 888 88 2 3 3 000 77 0 5 0 5 00 0 222 0 2 5 88888888 555 2 2222 0 8888888888888888888 0 8 55555 888 555 0 88 555 0 0 88 2 5 2 7 7777777 3 3 3 7 7 3 0000 55 0 0 5 0 0 0 0 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 0 0 0 00 55 5 0 0000 00 0 555 0 555555 0 5 55 0 5 3 777 0 00 5 0 5 0 3 0 0 0 0 99999999999999999999999999 11 0 11111111 0 0000000000000000000000000000000000 0 7 7 7 7 444444 0 7 22 7 7 7777777 0 4 0 4 4 1111111 4 1 4 55555 4444 6 00 00 6 66 1 8888 00 1 55 88 0 9 9 5 999 7 11111111111 1 5555 2 2 22 1 777 7 66 22 99 9 9 888 9 7 9 66
consensus : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCGATGTGGCAA-GGAATGCCATTTTGT-AA-AT--------------------------AGAG--TTGTCGTTCCT--------TACATTAGCTGATTAAGTTTA---AAAAT-G-----TA--TA----------TAGTTAATTTCCTAATCG-GTAGTTTAGT-GATT-GC-A-CCTTACAATAA------TCANT-AN-TAAACATG-TTGTAAGTA-T-ATAANTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAACA-----CCAGAT--GATTTATTAC-GTAGAGTTGCATATA-TA--TATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
Reference ( family-598 ) : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAATATGGTTGTTTTACGTTGATCACCAACCAAACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTT--CCAACGTTAGAGTGACAACGTTGTTC-AAC--TGAGGGTTTANCGATTGCACNTTANAATATATCAGTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTGAAATATGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTGT-TTT----CAACG---TTAGACCTTTTCAAACGTTG-AGGTTTCAACGTTGAA-------TTCGA---CGT-TTGTATTTCA-C-AACGTT-G-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATATGTGATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTACGCAGTAATCGAAGTTTTTGTCA-TGTCCCGCAGTGAAAAAAAAAGCGGCNTACATTTTGCCCATAANTAAANATGNTTNTGTTAGCGTTGGTCAACCAAAAC---CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTGTTTCAACGCTTGAGGNTTNANAAATTGTATAATGGAAATAAATATGTTGATTAAANATATAAACTGGGAAAAAGGTCAGTTCTTGTCCAATGAGCAAGTAAAATAGTAAAATATACGCCTCAATATGGTTTAAATTCAAGTTCTAATATCAT-TTTGTTTTACGCAGTNATCANNGTTTTTGTCATGTCTCCGCAGTGGAAAAANGCGGCTTACATTTTGCCNATGTGGCAA-GGAATGCCATTTTGT-AA-AT--------------------------AGAG--TTGTCNTTCCT--------TACATTAGCTGATTAAGTTTA---AAAAT-G-----TA--TA----------TAGTTAATTTCCTAATCG-GTAGTTTAGT-GATT-GC-A-CCTTACAATAA------TCANT-AN-TAAACATG-TTGTAAGTA-T-ATAANTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAACA-----CCAGAT--GATTTATTAC-GTAAAGTTGCATATA-TA--TATAG-TGATGTTAGAGGCTG--T-TNNG-G--GAG--CGGTANCACGACATCT-GTGT-GACACCGTGTG-NCA-TTTG--A-C---T--ATA-CA----GCGAACACTGTG-TAATC--T-ACCC--GAG-G--G--AATCCTCT--GTGT-A-CGGTGGT-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGCGA
gi|1 : CCCAGCGGGCACCTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGTTTTACGTTGATCACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN--NNNNNNNNNNNGTGACAACGTTGTTT-AACGTTGAGGGTTTATAAATTGTATAT-AAAATATAT--GTGATAAACACTGGGAAAAGATCAGTTCTTGTCATGAGCAAAGTAAAATAGTAAAATATACGCTCATATGGTAAATTCAGCTTACTATGGTCATTTTGTTTTAACCGCAGTAATCAAAGTTTTTGTCATGTCTGCCAGTGAAAAAGCGGCTTACTTTTGCCCATAACTAAA--GTGGTTGT-TACGTTGATCAACCAAACTCCAAACGTTATGTTT----CAACGGTTTCAGACTGTTTCAAATGTTGAAGGTTTCAACGTTGAAAAAAAATTTCAACCCCGT-TTGTATTTTA-CAAACGTTGG-AGT---GACA-ACGTTGTTCTAACGTTGTTTCA---ACGTTGAGGGTTT-ATAAATTGGTTATAATGAAATATATGTAATAAAAACTGGGAAAAGATCAGTTCTTGTCATGAGCAAGTAAATAAGTAAAGATA---ATACGCTTCATATGGT-AATTCAATTCT-ATATCATTTTGTTTTAC-CAGTAATCGAAGTTTTTGTCA-TGTCTCGCAGTGAAAAAAAAAGCGGCTTACATTTTGCCCATAAAT-AACATGTTTTTGTTA-CGT--GTCAACCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACGCTTGAGGGTTTAAAAATTGTATAATGGAAATAAATATGTTGATTAAATATATAAACTGGGAAAA--GTCAGTT-TTGTCC-ATGAGCAAGTAAAATA-TA------ACG-CTCAATATGG--TAAATTCAAGTTCT-AT-TCAT-TTTGTTTTACGCAGTTATCACCGTTTTTGT-ATGTCTCCGCAGTGGAAAAACGCGGCTTACATTTTGCCGATGTGGAAA-GGAATGCCATTTTGT-AA-AT--------------------------AGAGTTTTGTCGTTCCT--------TACATTCACAGATTAAGTTTACT-AAACTGG-----TA--TA----------TAGTTAATTGTCTAATCGTATAGTTTGGTGGATT-GCAA-CCTTACAATAAATGCGGTAAAT-AC-TTAACATG-TTGTAAGTATT-ATAATTGGTT----A-ATTA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGACGTA-AAGCA-----CTAGTG--GATTTATTAC-GTAAAGTTGCA-ATATTAT-TATAG-TG-T-TTAGAGGCTG--G-TAAG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCGTATGAACA-TTTGC-A-T---TAAATA-CA----GTTTACACTGTG-TAAATAAT-ATAT--GAG-G--G--AA-CCTCTGAGTGT-A-GGGTGAT-CGG-C-A-ACGCTGAAATAGTG--TTGACGACTCTG
gi|10 : GTGGCAA-GGAATGCCATTTTGT-AA-AT--------------------------AGAG--TTGTCGTTCCTAGCATTTCTACAT-AGCTG-------------------G-----TA--TA----------TAGTTAATTTCCTAAACG-GTAGCTTAGT-GATT-GC-A-TCTTACAATAA------GCATT-A------------------------------GTTAT-GA-A-TA------TATAGGTCCGGTA-TATTGTAAGA-TAG---ATTGTTT----TGGATGGACGTA-aataaaacttggatatgaaagtt
gi|10 : CT-GTGT-GACTTCATGTT-TTG-TTTG--ATC---G--ATA-CA----GCGAACGCTGTG-TAATC--T-ACCC--GAG-G--GGGAATCCTCT--GTGT-A-AGGTGGT-CAA-C-A-ACGCTGAAtagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgctgtgtgacttcatgttttgtttgatcgatacagcgaacgctgtgtaatctacccgagggggaatcctctgtgtaaggtggtcaacaacgctgaa
gi|12 : gtggcaaggaatgccattttgtaaatagagttgtcgttcctagcatttctacatagctggtatatagttaatttcctaaacggtagcttagtgattgcatcttacaataagcattagttatgaatatataggtccggtatattgtaagatagattgttttggatggacgtatagccattttgagacaagagataacacgcatctaagttgtgaccaaactatcgccagaggtacgtccgcacgatcaaaactaagagacacagggcattatgggtaggatgACTTCAACGTTGAAGCAACGTTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAACGTTG-----TT--CCAACGTTAGA
gi|12 : cagcggcTGAAATATGGTTGTGTACGTTGATCAACCAAACTTCAA-CGTTGT-TC-----CAACG---TTAGATCTTTTCA--CGTTG-AGGTTTCAACGT-GTA-------TCCGT---CGTGTTG-ATTT-A-C-AACGTT-G-ATTTAAAACACACGTTGTTCTAACGT-GTTTCA---ACGTTGAGGG-TT-ATAAATTG--TATAATAAAATATTTGTGATAAAAACTGGGAAAAGATC-GTTCTTGTCATGAGTAA-TAAAATAGTAAA---AAGTATACGC-TCATATGGTAAATTCAATTCC-ATATCATTTTGTTTTATGCAGTAATTAAAGTTTTTGTCA-TGTCtcttttcacgttgaggtttcaacgtgtatccgtcgtgttgatttacaacgttgatttaaaacacacgttgttctaacgtgtttcaacgttgagggttataaattgtataataaaatatttgtgataaaaactgggaaaagatcgttcttgtcatgagtaataaaatagtaaaaagtatacgctcatatggtaaattcaattccatatcattttgttttatgcagtaattaaagtttttgtcatgtct
gi|14 : cagcggcacttcaacgttgaagcaacgtTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTTTAATATTAATTTATTATTTGCTATGGATGGACGTATAAACA-----CTAG-T--GATTTATTACGGTGAAG-TGC--ATA-TA--TATAG-TGATGTTAGAAGCTG--G-TATG-GT-GAG--CGGTATTACGACATATGGTGT-GAC-CCGTGTG-ACA-TTTG--A-T---T--ATA-CA----GTTTACACTGTG-TAATC--T-ATAT--GAGAG--G--AAT-CTCT--GTGT-T-GGGTGAT-CGGCC-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCGGTGGGAt
gi|15 : A-TA--TATAG-TGATGTTAGAGGCTG--G-TATG-G--GAGAGCGGTATTACAGCATAT-CTGC-GATATCGTTTG-ACA-ATTAGAA-C---T--ATA-CA----GCGAACACTGT--T-ATC--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAAGAAATG--TTGAAGGCTCTGTACATCGGTGCGAactaatgctggaataagtg
gi|16 : c-TTGTAAGTAGT-TTAAGTGGTTTC-GATA-T-------TATAGGCTCAGTA-TATTGTAATATTAATTTATTGTTTGCTATGGATGGAAGAA-AAATA-----CCAGGT--GATTGGTTATGGCAGAGCTGCATAT------TATAGTTTACGTCAGAAACTG--T-TTGG-G--GAGATCGGTA-CACGATATCT-GTGTGGACA-CATGTG-TCA-TT------C---T-------------TGAAC-----G-TA-------ACAC--GA-----------CTTAT--GTGT-A-CAGTGAT-CGG-C-CTACGCTGAGTAATTG--TTctaacgctgaataagtgttagaaacaccgagtgttgagggggagtgttggtatctccccggtagatatttggtagataggcgagtgttgttggtatcccc
gi|17 : agtaaaatgtatgttagttaatgtcagttcGCAA-GGAAAACCATTTTAT-AA-AT--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|18 : aaaataatctgaaattctgttgcttaagaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagggttaactcaagtaagcaatgtatatagccaataagcctcgtggc--------------------------AGAG--TTGTATTTTCT--------TACATTAGTTGATTAG--TTA---AAA---------TA--AA----------TAGATAATTTCCTACTCG-GTAGTTTAGT-GATC-CC-A-CCTTACAATAA------TTATT-AG-TAAATATG-TTTTTAGGA------AGTGATTTT-GA-A-TACTAGAATATAAGACCAGTA-TATTGTAATATTTATTTATCATTTGCTATGGATGGACGTA-AAACAC----CCAGATTGGGTCTA------CAGAGTAACATATA--A---ATAG-TGACGtctagagagtaatattttcttacattacgct
gi|19 : agttgtcgttcctaacattcctagTGAAATATGGTTGT-TACGTTGATCAATTTA---CCAAACNNNNN-NNN----NNNNN---NNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-------NNNNN---NNN-NNNNNNNNNN-N-NNNNNN-N-NNN---NNNN-NNNNNNNNNNNNNNTT---TCA---ACTATGAGGG-TTTATAAATTG--TATAATAAAATATATGTGATCAAAACTGAGAAAAGATCAGTTCTTGTCA
gi|2 : gtTGTGGCAA-GGAATGCCATTTTGT-AA-AT--------------------------AGAG--TTGTCGTTCTT--------TACATT
gi|2 : TAATTAAGT------AAAAT-GATAAATAGTTA----------TAGTTAATTTCCTAAACG-GTAGTTTAGT-GATTTGC-AACCTTACAATAA------TCAGTTAA-TAAACATG-TTGTAAGTAGT-ATAATTGGTTTT-GA-A-T-------TATAACCCCAGTAATATTGATAGATTAATTTATTATTTGCTATGGATGGACGGA-AAGCAACTAACTAGA---GATTTATTAT-GTAGGGTTGCAAATA-TAATTATAG-TGATGATAGAAGCTG--T-TTGC-GACGAG--CGGTGACATGACATCT-GTGT-GGCTTAGTCT--ACG-TTTG--A--------------------GAACACTGTG-TAATC--T-ACCT--GAGAG--G--AATCCTCT--GTGT-A-CGGTTAT-CGG-C-A-ACGCTGAATAAGTG--TTGACAACTCTGTACATCGGTGCGAcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaactctgtacatcggtgcgactaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|2 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnnCTCT--GTAC-ATCGGTG---CGA-CTA-ACGCTGAATAAGTctaacgctgaataagtttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|20 : tgtggcaaggaatgccattttgtaaatagagttgtcgttctttacattcctacagagttatcttttcttacattagctgattannnnnnnnnnnnnnnnnnnnnnnnntaattaagtaaaatgataaatagttatagttaatttcctaaacggtagtttagtgatttgcaaccttacaataatcagttaataaacatgttgtaagtagtataattggttttgaattataaccccagtaatattgatagattaatttattatttgctatggatggacggaaagcaactaactagagatttattatgtagggttgcaaatataattatagtgatgatagaagctgtttgcgacgagcggtgacatgacatctgtgtggcttagtctacgtttgagaacactgtgtaatctacctgagaggaatcctctgtgtacggttatcggcaacgctgaataagtgttgacaaCCAGCGGGCACTTT-AACGTTGAAGCAACGTTGAAATATGGTTG--TTACGTTGAT---CAACCAAACNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT--ACAACGTTGGAGTGACAACGTTGTTCTAAC------AGTTTAGTGATTGCACCTTACAATA-ATCAGTAATAAACA-TGGttagaaacactgaagtgtgtaagggggagtgttgtatctccccgttatgaattatttaatagatatggcgagtgttggtattctttcctgtagaccctggaaaggagtgttggtatccccgtaacaacagttaaaggttgcaaaggggtgttggaactcctgggcctttgagcatggacagcccgggcggtattggacagcctcggagggcgtcggtcacacaaattgggtgtgcgaagttagcctctttgtgatcaagtggtcgacgtccataacagtcaggcagactccactgtaatacgttgcgcatatttgtacatgtattatattgaggcacaccagttctgatacggtcaggcaggaccaattgtaaatacgttgcgcatatctgtatattttgaagcgcactaactgctctcttgaggtctgatactacgcagacccgatcccggttgtaggcgtgacaagtagtcagacaccttacacgttaca
gi|21 : ATGTGGCAA-GGAATGCCATTTTGT-AA-A----------------------------GAG--TTATCTTTTCT--------TACATTAGCTGATTAAGT------AAAAT-G-----TA--CAATTATACATGTAGTTAATTGTCTAATCG-GTATTTTAGT-GATT-GC-A-CCTTACAATAA------TC
gi|22 : gatcagcagacaccaggaatgaaactggacttgtagattttatgcgagggcgcataaacttagggaggggtaTAGAGGCTG--T-TTTG-A--GAGAGCGGTATTACTTCATTT-CTGC-GGTACCGTGTG-ACAATTTG--A-G---C--ATAACA----GTGAACACTGT---AATC--T-GCCTAAGAG-G--G--AATCCTCT--GTGT-A-CAGTG------------------------A--TTGACAACTCTGTACCTCAGTGCGA
gi|23 : G-TGATGTTAGAGGCTA--T-TCTA-A--AAAA-CGCTTTTACGACTTCT-GAGA-GACACCGTGTG-CCCTTTTG--A--------ATA-CA----GCGAACAC--TG-TAATC--T-ACCT--GActaacgctgaataagtgtt
gi|24 : AT-GTAAAGTTGCATATA-TA--TA--G-TGATGTTGGAGGCGG--AATTGG-C--GAG--CGGTAATACGACATCT-GTGT-GACATCATGTG-ACA-TTT
gi|27 : CGTTGATCAACCAAACTTCAACGTTGT--TT
gi|3 : -A-TG------TATAGATCCAGTA-TATTGTAAGATTAATTTATCATTTGCTAAGGGTGGACGTA-AAACA-----CCAT-T--GATTAACTAT-GCAGAGTTGC--ATA-TA--TATGG-GGATGTTAGAAGCTA--T-TTTG-GT-CAG--TGGTAACTCAATGTTG-GTGT-AACTCCGTGGG-TCC-TTTG--A-CA--T--ATA-TA----GCATGGACTGTGCTTGTC--T-ACCC--GAG-GGAG--AACTCTCT--GTGT-A-CGGTGGT-CAG-C-A-ACGCTGAATAAGTG--TTGACGAATTAGTACTTTGGTGTGAc
gi|4 : ttttaatatacTTATTAT-GTAAAGTTGCATATA-TA--TA--G-TGATGCTAAAGGCGG--T-TAAG-G--GAG--CGGTAACACGACATCT-GTGT-GACTCCGTGCT-TTA-TTTG--AAC---G--GTA-CA----GCGAACAT--TG-TAATC--T-ACCCGAGAG-G--G--AATCCTCT--GTGT-A-TGGTGGA-CGG-C-A-ACGCTGAATAAGTG--TTGACGACTCTGTACATCAGTGCGActaaagctgaataagcatttgtagcacctgagtatattgggggagtgttggtatcaccctggtcgatattaaatgagtgttggtatcaccctggtcgatatttaaaggagtgttggtatctccccggttggaccactggaaaggggtgttggtatcccgtgaacaataaggttagggatgttggaaactcctggtacctcgaggcataagttagcctcagagcgattggtcacacaattgggtgtgttaattaatgttagcctctggttgacgcctatagacaggttaggcagaccattgtaagatacgttgcgcatatttgtatattttgaagcgcactgaggtctgacactacacacacccgatcccggatgtagggcgagacaggtagccaggccccctacacgttaca
gi|5 : ACTTCAACGTTGAAGCAACGTTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAACGTTGT--TTTTTCCCAACGTTA----GAC----TTTTCC-AACT-TGAGGATTCAACGctaaagctgaataagctttagtagcactgagtgtttagagggagtgttggtatctccccggtacatatttaaatggataggagaatgttgatatatcccctggggaggggtgttggtatccccgtgaactataagaattgcaaagaggtgagttgagaaaactacctggtacctgagcatctggttagcctcgggcggtcggtcacacaaattgggtgtgcgaagggttagcctctgtgatcaatggtcgcacgtccatagacaggatcagagcagaccattgtaagataccgttgcgcatatattgtattttcatttgaggcgcccccagttatctcataaggtgcaggcagaccacttgtaaatacattgcgcatcatcttgtattattttgaaaggcgacactaagcaagctctctgagtcgaactacggccgcctcgatcccgacttgtggggcgtgacaagctagtcagacccc
gi|5 : cccagcgggccTGAAAT-TGGTTGT-TACGTTGATCAACCAAACTTCAA-CGTTGT-TTTTTCCCAACG---TTAGAC-TTTTCCAAC-TTG-AGGATTCAACGTT-AA-------TTCAA---CGG-TTGTATTTCAAC-AACGTT-GTAGT---GACA-ACGTTGTTCTAACGTTGTTTCACAAACGTTGAGGG-TT-ATAAATTG--TATAATAAA-TATATGTGATAAAAACTGG-AAAAGATCAGTTCTTGTCATGAGCAAGTAAAATAGTAAA---A---ATACGC-TCATATGGT-AATTCAGTTCTAATGTCATTTTGTTTTACGCAGTAATCAAAGTTTTTGTCATTGTCC----GTG--AAAAAAAGCGGCGTACATTTTGCCCATAACTAAAAATGGTTGTGTTAGCGTTGATCAACCAAA-----CTTTCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGACAACGTTTTCTAAACGTTG-TTCAACG-TTGAGGTTTAATAAATTGTATAA--GAAAT--ATATG-TGATTAAAAATAT----TGGGAAAAAGATCAGTTCTTGT-CAATGAGCAAGTAAAATAGTAAAATATACGCCTC-ATATGGTTTAAATTCAA-TTCTAATATC-T-TTTGTTTttaattcaacggttgtatttcaacaacgttgtagtgacaacgttgttctaacgttgtttcacaaacgttgagggttataaattgtataataaatatatgtgataaaaactggaaaagatcagttcttgtcatgagcaagtaaaatagtaaaaatacgctcatatggtaattcagttctaatgtcattttgttttacgcagtaatcaaagtttttgtcattgtccgtgaaaaaaagcggcgtacattttgcccataactaaaaatggttgtgttagcgttgatcaaccaaactttcacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtgacaacgttttctaaacgttgttcaacgttgaggtttaataaattgtataagaaatatatgtgattaaaaatattgggaaaaagatcagttcttgtcaatgagcaagtaaaatagtaaaatatacgcctcatatggtttaaattcaattctaatatcttttgttt
gi|6 : cccagcgggccacttcaacgttgaagcaacgtATATTACATTTGTTTTACGCAGTAATCAAAGTTTT-GTCATG-CTCCGCAGTGAAAAAAAGCGGCTTACATTT-GCCCATGTGGCAA-GGAATGCCA-TTTGTAAA-AT--------------------------AGAG--TTGTCGTTCCT--------TACATT
gi|6 : aatgaaattgctaaaacttttttggttcagtAGTTTATCTAAAAT-G-----TAA-TA----------TAATTA-TTGTCTAATCG-GTAGTTTAGT-GATT-AC-A-CCTTACAATTA------TCAGT-AT-TACACATGGTTGTAAGTA-TTATAATTGGTTTT-GA-A-TA------TATAGGCCCAGTA-TATTGTAAGATTAATTTATTATTTGCTATGGATGGGCGTA-AAGCA-----CTAG-T--GATTTATTAC-GTAAAGTTGC--ATA-TA--TATAG-TGATATTAGAGGCTG--T-TTTG-GT-GAG--CGGTATTACGACATCT-GTGT-GACACCATGTG-ACA-TTTGA-A-C---T--ATA-CA----GCGAACACTGTG-TAATT--T-ACCTGAGAG-G--G--AATCCTCT--GTGT-A-CAGTGAT-CGG-C-A-ACGCTGAATAAGTG--TTGATGA--CTGTACATCGGTGCGAcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttatctaaaatgtaatataattattgtctaatcggtagtttagtgattacaccttacaattatcagtattacacatggttgtaagtattataattggttttgaatatataggcccagtatattgtaagattaatttattatttgctatggatgggcgtaaagcactagtgatttattacgtaaagttgcatatatatagtgatattagaggctgttttggtgagcggtattacgacatctgtgtgacaccatgtgacatttgaactatacagcgaacactgtgtaatttacctgagagggaatcctctgtgtacagtgatcggcaacgctgaataagtgttgatgactgtacatcggtgcgactaacgctgaataagt
gi|7 : aatgaaattgctaaaacttttttggttcagtatattacatttgttttacgcagtaatcaaagttttgtcatgctccgcagtgaaaaaaagcggcttacatttgcccatgtggcaaggaatgccatttgtaaaatagagttgtcgttccttacattcctacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGGCAA-GGAATGCCATTTTGT-AA-ATAGAGTTGTCGTTCTTAACATTTCTAGAGAG--TTGTCATTACT--------TACATTAGTTGATTAAGT------AAAAT-G-----CA--TA----------TAGTTAATTTCCTAATCA-GTAGTTTctaacgctgaataagt
gi|7 : G--T-TTGG-A--GAG--CGGCAACACGACATTA-GTGT-GACTCCGTACA-TCG-TTTG--A-TCTAT--ATA-CATGTAGCAAACGCTGTGCTTATC--T-ACCG--GAG-G--GGGAATCCTCT--GTGTGA-C-GTGGT-CGG-C-A-ACGCAGAATAACTG--TTGACGACTATGTACAATGGTGTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgactatgtacaatggtgtgactaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|7 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgCT--ATGT-A-CAATGGTGTGA-CTA-AAGCTGAATAAGCG--TTctaaagctgaataagcgttagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|8 : tgtggcaaggaatgccattttgtaaatagagttgtcgttcttaacatttctagagagttgtcattacttacattagttgattaagtaaaatgcatatagttaatttcctaatcagtagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggtttggagagcggcaacacgacattagtgtgactccgtacatcgtttgatctatatacatgtagcaaacgctgtgcttatctaccggagggggaatcctctgtgtgacgtggtcggcaacgcagaataactgttgacgaATAG--GACGCTAGAGGACGATT-TAAACA--GAG--CGGTAACACGATACTT-TCGT-GA------------A-TATG--A-C---C--A----A----GCTA-CAC---G-CAACC--TGAGTT--GAA-G--A--GATTCTCT--GTAT-A-TGGTGTA-CGG-C-A-ACGC-GACAAAGCGCATGGACGACTagtagcacctgagtatagtggggagtgttggtatctccctggtagataatggaaggagaga
gi|9 : caacaTGCCGTTGTGTCAAAGGAGTGTCGTTCC-T-AACATTCCTAG--------------------AGAG--TTGTATTTTCT--------TACATTAGTTGATTA-GTT-----AAAAT-A-----AA---A----------TAGATAATTTCCTACTCG-GT-GTTTAGT-GATC-CC-A-C-TTACAATTA------TTATT-AGATAAATATG-TTTCAGG-------AAGTGATTTTTGA-A-TACTAGAATATAAGCC-AGT--TAT-GTAATATTTATT-ATCATTTGCTATGGATGGACGAA-AAACA-----CCAGATTGGGTCTA------CAGAGT---AAATA-TA--AATAG-TGACGtaggtcacagcactgaaaaataggggagggtggatattcccacggtagaccactacgattggaatcgaagtgttgtatttcccggtagaacgctggagagggtgctagtatccccgtgaacgagaggtacatgtaatcctggtaccttgtggtatggttagcctcggagcgcgtcggtcattacttactgagtgtgtgaaattaaagttagcctctggtgataagtggtcgacgtccttttagacaggtcaggcagacctaaaagttacgttgcgctgatagattgtatatattgaggcgcaccagttctcttagggtcatgtagaccaattgtaaatacgttgcgcatatctgcgcactgagatctttaggtctaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCATTGGAAGAGTGTTGGTATCTCCCCGATAGATAATTGCTAGGTCGGGAGTGTTGGTATTTCCCCTGTAGACCGCTGGTATCCCCGTGAACAATAAGGTAAGCGGTGTTGGAAACTCCTGGTAAATTGAGGCATTAGTTAGCCTTGGAGCAGTCGGTCACACAATTGGGTTTGTGAAGGTTAGCCTCTGGTGGTCAACGTCCATAGACAGGTCAGGTAGACCAATTGTAAATACATTGCGCATATCTGTATATTTTGAAGCACACTAAGCTAGCTCTCTGAGGTCTGATACTACGCAGACTCGATCCCGGTTGTAGGGCGTGACAAGTAGTCAGACCCCTACACGTTACA
Unaligned ( gi|13 ): CACACAATTGGGTGTGCGAAGGTTAGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATCAAGTGTCGACTCATAAGTCAGGCAGACCCCCCCCCCCCAACTGTAAGATAACGTTGCCGCCGATATTTGTACATGTATATATACTTGAGCACACCAGTTCTGCATACCGGTCAGGCAGGACCAAATTGTACACATACGTTGCGCATATCTGCTATATTTTGAACGCACTAACTGCCTCCTTGAGGTCTGATACTACGCAGACCGATCCCGGTGCCTAGGCGTGACAAGTAGTCAGACACCTTACACTTTACA
Unaligned ( gi|25 ): TCTCGGTTGTAGGGCGTGACAAGTAGTCAGACACCTTACACGTTACA
Unaligned ( gi|26 ): TATATTTGAAGCACACTAAGCTAGCTCTCTGAGG