lowQualScore : 111111111111111111 111111111111111111111111111
lowQualScore : 1 1 1 11 1 111111111111111111 1 1 111 1 11 1 1 11 1 111 1 2222 111 2222222 1 1 1 444444 22222222 1 4444 1 1 1111 1 1 44444444 11 22222 1 66666666666 1 22222 1 2222 22 555555555555555555555555555 2 1 11 11111 2 1111111 11 888888888888 11 888888888888888888888888888888888888888888888888 111 44444444444 2222
lowQualScore : 3 3 8 0 44 55 0 6 2 333333333333333333 0 2 0 0 555 0 3 33 0 2 0 22 3 5 777 7 2 3 0 1111 777 2 1111111 2 0 0 5 2 888888 6 4 33333333 0 4 3333 0 0 6666 8 0 8 3 4 11111111 99 3 66666 5 88888888888 2 5 2 77777 5 2222 77 2 111111111111111111111111111 8 6 3 3 0 33 9 8 1 44444 2 66 66 1 5 5 4444444 2 5 66 4 4 1 4 4 00 0 77 4 4 7 55 4 4 444444444444 0 66 11 55 5 5 66 5 666666666666666666666666666666666666666666666666 3 1 0 888 888 5 2 5 4 3 55 333 44 5 5 0 22222222222 2 66 0000 3
lowQualScore : . . . . .. .. . . . .................. . . . . ... . . .. . . . .. . . ... . . . . .... ... . ....... . . . . . ...... . . ........ . . .... . . .... . . . . . ........ .. . ..... . ........... . . . ..... . .... .. . ........................... . . . . . .. . . . ..... . .. .. . . . ....... . . .. . . . . . .. . .. . . . .. . . ............ . .. .. .. . . .. . ................................................ . . . ... ... . . . . . .. ... .. . . . ........... . .. .... .
lowQualScore : 3 3 3 0 55 00 0 5 0 222222222222222222 8 5 0 0 888 0 0 88 0 0 0 00 2 8 555 8 5 5 0 2222 555 0 8888888 8 0 0 0 5 888888 5 0 22222222 0 0 0000 0 0 0000 8 0 3 3 0 00000000 55 0 00000 5 55555555555 5 5 5 00000 5 0000 55 5 888888888888888888888888888 3 7 3 2 0 88 8 0 7 33333 1 99 99 2 0 0 0000000 5 1 99 0 2 9 4 4 66 1 11 4 4 4 22 4 7 333333333333 2 99 00 11 0 0 55 0 999999999999999999999999999999999999999999999999 1 1 9 000 888 0 2 0 2 1 11 111 00 0 0 4 66666666666 8 99 6666 3
consensus : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCT-A-TCC-T-ACC-TC---TATCAGCGTA-AGAAT-GA--TTGG-TTTTNGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAGA-TGCACATCACTCAAAAT--AATGGTTNAACNGC---A--T-AAAAG-ATANCT--ATAATTAA-GACT-GGTA-A-AATCCA-GATTTGGAACAA-TCAGCATGTAGANGCNATAAACTTTTTATTTANCTAAAAAGGTTNAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAATACAACCCTNGAAAAATNAAGTAGATAATATAAACTCATCTTATATGTTCTAGGATTATAGGNTGTACAAGACAACCTTTGGTTTNATGAAAGTTGTCTACC-ACTAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CNATT--GAAAGT--GGCAGATTTTTA-AGTATT-GATAGGTCTG-ACGGA-TATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AANTG-TAC-TTATTT-----TATTTA-TTTCAGAAAG--GT-GTA-GATT-CTTG-C-CG-AAATG-CTTT----ACT-GA--TTGCCC-A-ATA------CT-AT-------TAACTATAGTAA-ACT---AATG-AACTG-TGAAGACAAATTTACT-ATG--ATAGGCCTT-GCC-AAATTTATCAAGA--ATA-G---TAATGCCC--AT----ATTCTTATGATATT
Reference ( gi|2 ) : TATGTATGACA-TA-TGGAGAA-CTTAATAATGTA-CCCATGCCT-A-TCCGT-ATTATTAAGTATCAGTGTA-AGAAT-GA--CTGG-TTTTTGGGAA--CG-CATCATAAATG-GTACACATGAAAAGAT---CTAAACTTT-GTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAA-TGGATATCACTCAGAATT-AATGGTTCAACAGC---A--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCA-AATTTGGATCAA-TCAACATGTAGAAACGAT-AACTTTTTATTTAATTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGA-TCAATA----CCTGGAAAAATGAAGTAGATAATATAAATTCATC-TA-ATGTTCT--AATTATAGACTGTACAAGACAAC--------TA--GA-------CTACC-ACAAGATTTATTGTATCAACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAATTGC-----CAATT--GAAAGT--GGCAGATTGTTA-AGTATT-GATAGGTCTGAACAAA-TATGTCCTCCCTGTAA--CAAGCAAGGATTA-GGT-GATGAATTTC--ATTATC-T-GTTC-AACTG-TAC-TTATTT-ACC-TATTTAGTTTCAGAAAG--GT-TTA-GATT-CTTG-C-TG-AAATG-CTTT----ACT-GA--TTGTTC-A-ATA------CT-AT-------CAACTGTAGTAA-ATT---AATG-AATTG-TGAGGACAGATTTACT-ATT--ATAAGCCTT-GCC-AAATTTATCAAGATCATA-G---TAATGTCC--AT----ATTCTTGTGATATT
gi|1 : TATGTATGACAATA-TGGAGAA-CTTAATAATGTAACCCATGCCT-A--CCGTGATTATTAAGTATCA-TGTA-AGAATTGA--CTGGCTTTTTGGAAA--CGGCATCATAAATG-GTAC-C-TGAAAAGAT---CTAAACTTTTGTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAAATGGATATCACTCAGAATTTAATGGTTCAACAGC---AAAT-AAAAGGATATCTTTATAATTAAAGACT-GGTA-A-AATCAA-AATTTGGATCAAATCAACATGTAGAAACGATAAACTTTTTATTT-ATTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCC-TTTGTTGATTCAATACAACCCTGG-AAAATGAAGTAGATAATATAAATTCATCTTA-ATGTTCTAGAATTATAGACTGTACAAGACAAC--------TAATGA-------CTACCAACAAGATTTATTGTAT-AACTAT-TGTCCCGC-TTAGATGCAGTAAGTCAT-AATTGC-----CAATTTGAAAAGTGGGGCAGATTGTTA-AGTATTGGATAGGTCTGAACAAA-TATGTCCGCCCTGTAA--CAAGCAAGGATTATGGT-GATGAATTTCCAATTATC-T-GTTCAAACTG-TACTTTATTTAACCATATTTAGTTTCAGAAAT--AG-TTA-GA-T-CTTGTC-TG-AAATGTCTTT----ACT-GGACTTGTTC-A-ATA------CT-AT-------CAACTGTAGT-A-ATTACAAATG-AATTGTTGAGGACAGAATTACTAATT--ATAAGCCTT-GCCAAAATTTATCAAGATCATAGG---TAATGTCC--ATA---ATTCTTGTGAT
gi|4 : tgATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CTCATATCT-A-TC--------TC---TACCAGCGTA-AGAAT-GA--TTGG-TTTCTGGGAA--CG-CATTATAAATA-ATAAACATGAAACGAT---CTATACTAT-ACA----CAGCATTTTATAATATG--T----TAAAT-ATGGAGA-TGCACATCACTCAA-----AATGGTTAAACTGT---A--T-AAAAG-ATAACT---TAATTAA-GACT-GGTA-A-TATCCA-GATTTGGA
gi|12 : atgctaagaaaaccaaagttgtcgctttttgtatgaatcgtaatgtagacaatattagatttaactgcatttgtgaacaattgcctgtacataattgattaatttcaataattaggcatttaattttctaaaaagggttggtttaaatctaataaagatagacttgtacaacaagcaaggaaagccatgttttatgcattacgtaaatctagaaaattatgtttacctatggatatatgattcaatggttgctcctatcttgatgtatggagcagatatgtggggttatgacgatactaatatcattgaaagattctatcttgaattttgtagatgcatattgaaagtcaaaaattgtacaccgacTGTATGACA-TAATGGTGAAACTTGGTAGAGTA-CC-ATATCTTA-TCTCT-ACC---------CAGCGTACAGAAT-CAATTTGG-TTTTGGGGAAAGCG-CATTATAACTATATAAACATGAAC-GAT---ATATA---T-ATAACAACAGCATTTT---ATATA--TATGTTAAAT-ATGGAGA-TGCACATCACTCAA-----AATGGTTTAAAAGCTGTA--TAAAAAG-ATAACT---TAATTAA-GACTGGGTATG-GATCCAGAAATGGGAACAA-TCctctcgcgactagataagtatggtcttaccttttatctat
gi|17 : GAA-CTTGGTACAATA-CCTATGTCT-AATCC------------TATTAGTTCA-AGAAT-GA--TTGG-TTTTGGGGAA--GG-CATTATAAATG-GCGAACATGAAATGATCCCCTAGACTTT-GTA----CAGCATTTT---ATACAAGT----TAAATG
gi|3 : ----TAAATGATGGAAA-TG--TAT---TCAAAAT-----GGTTAAACTGT---A--T-AAAAT-ATATCT--A-AATTGA-GTCT-GGTA-ATAATC-A-GATTTGGAACAA-TCAGCATGTAGATGCT-T-A---TTTTATTTATCTAAAAAAGTTCAACAG-----TCATTATATGACCCTTTTGTTGA-T----A----CCTTGAAAAATCAAGTA-----TATAA-CTCATC-TATATGTTCT--GATTATAGGGTGTACAAGACAACCTTTGGTTTT--GAAAGTTGTTTA---ACTAGATAGATT-TCCCAAG-ATGTGT--CGCATCGGGTGCAGT-AGTCATAAACTGC-----CAATC--GGAAGT--GGCAGCTTTTTA-AGTATT-GATAGGTCTGTACGAA-TATGTCTTCTCTGTAA--CAAACAAGAATTA-GGT-GATAAATTTC--ATGATT-T-GTTC-AAATG-TAC-TT-TT---CT-TA-----TTTTAGAGAG--GT-GTC-GATT-CTTG-C-GG-AAATG-TTTG----ACT-AA--TTGCCCAA-ATATATGCTCT-AT-------TAACTACAATAA-ACT---AATG-AACTG-TGAAGACAAGTTTACT-ATG--ACAGGCCTT-GCC-AAATTGATCAAG---ACA-G---TAATGTCC--ATATTAATTCTTATGATATT
gi|14 : -ACTAGACTTATTGTAT-AACTTT-TGT--CGTTTTAGATGCAGT-AGTCACAAACTGC-----CAATT--GAAAAT--AGCAGGTTTTTA-AGTATT-AATGGGTCTGTACGGA-TATGTACTCTTTTTAA--CAAACACGAATTA-GGT-AATAGATTCC--ATTTTG-T-GTTC-AATTA-CAT-GTATAT-Ataccttcctgttgtgttttttcattacattcagcattaaattgtttattattgattgttctaacattccccatatggggtctttt
gi|9 : ggatttgaaaattattttaaaTAT-CGT--AATTTTAGATCTGTT-AGTCACAGACTGC-----CTGTT--GAATGT--GGAAGATT-TTATAATATG-GACAGATCTG-ATAGATTATGTGATCTCTCTAATGCAAATGAAAAT---GGA-GATGAATATT--ACTACA-T-TTTT-AATTGAGAT-TTTTTT-----TA--TAATGAAAGAAAAATGT-TT----TTACCTG-CATGTATATA---TA----ACTAGA---------A-ATG------TC-AT-------TAGTTTT-GCAAAATT---GTTC-AATAG-TGATGGCGGATTTACT-CTT--AT-TGTTTTGGCC-AATTTTGT--AGA--ATA-G---TAATGCCT--AT----ATTCtgctttatttct
gi|7 : gtgTGCAGT-TGTCATGAATTGC-----CAATT--GAAAGT--GGCAGATTTTTA-AGTATT-GATAGGTTTGAAAGAA-TATATCCTCTCTGTAA--TAAACAAGAATTA-AGT-GATGAATTCC--ATTATC-C-GTTC-AACTG--------TTT-AAC-TGTTTA--TTTAAAAAA--GT-GTA-GATT-CTTG-C-CG-AAATG-CTT-----------------------------------T-------TAACTGTAGTAA-AGT---AAGG-AACTG-TGTAGAAAAATTAACT-ACA--ACAGGCCTT-GCC-AAATTTATCAAGACAATA-ATGCTAATACAT--GT----ATTATTATGATATaaaaaatgatattata
gi|13 : CATAAATTGCAGTGCCTGTT--GAAACA--GGCGGATT-TGA-AGTACT-GATA-------------TATGTACTCTTTGTAA--CAAACAAGAATTA-GGT-GATCAATCCC--AT-ATCCT-GTTC-AACTG-TAC-T------------------------AAA--AT-GTA-GATT-CTTG-C-CA-AAACG-CTTA----ACT-GA-----------------------AT-------TAGCTATATTGG---T---AATG-AACTG-TGACGAAAAATTTACT-ATG--ATTGGCCTT-GCC-AAATGTATCAGG---ATA-G---TAATGCCC--AT----GGCCTTATGATAcaccttccagttgtgttctttaattattcaacattgtttataattgattatcctatttgtactaacatgctctgagtggagcctttttgtgtgataaaaat
gi|18 : TTGC-----CTGTT--GAATGT--GGCAGATTTTTT-AATATA-GACAGATCTG-ATAGGTTATG-------TGT-A--CAAATGAAAAT----GTAGATGAATTTC--A
gi|5 : ATT--GAAAGT--GGCAGATT-TTA-AGTATT-GATAGGTCTGAACGAA-TATGCCCCATCTGTAA--CAAACAAGAATTA-GGT-GATGAATTCC--ATTATT-T-GTTC-AAATG-TAT-TTATTT-----TA-----TTTCAGAAAG--AT-GTA-AATT-CTTG-C-CG-AAATG-TATT----ACT-AA--TTGCCCAA-ATA------CT-AA-------TAACTATAATGA-AAT---AATG-GACTG-TGAAGACAAATTTACT-ATG--TTAAGCCAT-GTC-AAATTTATCAAGGCC----G---TAATATCCCAAT----TTTCTcatttaaagtgattttttttttatgatgaaagaaaaatgta
gi|8 : GAACTA-GGT-GATGAATTCCC-ATTATT-TTGTTA-AA-TG-TAC-TTATTT-----TATTT----TCAGAAAG--GTGTTAAGATT-CTTG-C-CG-AAGTG-TGTTGTGAGCG-AA--GTGTCC-ACATA------TTCATTTACATGTAACTATAATAC-ACT---GATGAAACTG-GAAGGACACATTTACT--TTGAATAGGCCTC-GCC-AA----ATCAA------------TACTG-CC--ATC---ATTTTTATGATATTatataacttttcgatataactttcctgttgtgtttttctccatgtttattttcattacattcaacattgtttattcttgattgatatactaatgtactaatatgctccatgtggagccctttactgtaataaaaacgtttcaaa
gi|11 : ctgtccagtcagtgagaacTT-T-GTTC-AAATG-TAC-TTACTT---------TA-TTTCAGAAAG--GT-GTA-TATT-CTTG-C-TG-AAATG-CTCT----ACT-AA--TCGCCC-A-A-----------AT---------ACTATAATAA-ACT---AGTG-AACTG-TGAAGACAAATTTGCT-ATG--ATAGGCCTT-GTC-AAATTTACCAAG---ACA-G---CAATGTCC--AT----ATTCTTATGATATTaccttcctgttttgttttctttcttcctctctactctttattcttcaattacatggcaacattgtttattctgattaatatactaagtattgtactaacatgcctccatgtgggccttttaatgtaataaaaagtttcaaaa
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTGATGGATTTCAATATCTTGGTATATTATTTTTAAGAAAAGGTAATTTTCACAAGAAAATAAAACTTGTGCAGCTAACACGAAAAGCTATGTTCAGTCGATTGAGAAAATCTAGGAAACTGTGTCTACCAGTTGATATTTTTTGCAATTGTTTGATGCCACGGATGTAACAGTTTTGCTCTATGCTTCTGAAGTATGGGGATACGAAAATAACAATGTGATTGAATTGTTACACTTGGAGTTCTGTAAATACGCAATGAAAGTTAATCCATCTACACATAATGGTATTTAATTGTATATGATGAACCAGGCAGAGTACATTTATACGTGTTCATAAATGCTCAAATGATTGGTTTTTGACAAAAGACTGTATCTGGTAAAATGAA
Unaligned ( gi|10 ): TGCGAAAACCAAGGTTGTCTTCTTTGTAAGGATTGCAATGTAAATAATACAAGGTTTATCTTGAATTGTGAATAGTTGTCTGTTTTTGATGAATTTCAATATTTGGGCATTAAATTTTCTCCAAAGGGTTTTAAAGCTAATATAGATAGACTTGTACAACAATAAAGGAACACCATATTCTATGTATTAAGCAAATCTACAAAACCATGTTTACCTATAAACATATTACTACAATTGTTTTGTTTAGTAGTTGATCCTATCTTGATTTATTGAGCAGAGGCGTGGGACTATGAATATAATA
Unaligned ( gi|15 ): GTTGAAAAAACCAAAGTTGTCATATTTTGTAAGAATATTGGATTTAACTTGGAATAGAGGAAAATTGTCTGTAGTTGATGAATTTCAATTATTTAGGCATTCAATTTTCTATGAAAGGTTAAAGGTAGACTTGTACAACAAGCAAGGAAAGCCATATGTTCTATGTATTTTGTAAATCTA
Unaligned ( gi|16 ): TGTTTGTCCATTTAATGTCAGTGTTTACATGTGTTTTTGTTCACCTTACTTTCAATTTTGTGGTCTTTAATGACTTTATGAGATCACTGTTATTTTCATATTTTCATTATCATTTACATTTATATCACCTATATATCACGTA
Unaligned ( gi|19 ): CATTCAACATTGTTTATTATTGCTTATTATATACTTTTTTGTACAACTATGTTCAATGTGTAGCCTTTTAATGTAATAAAAAGCTTCCAAA
Unaligned ( gi|20 ): CCTTCCTGTTGTGTTCTTTCATTACATTCAGCATTGTATATTCATGCTCCATGTGGAGCCTTTTTTAAATGTAATAAAAGTTTCA
Unaligned ( gi|21 ): CAGCATTGTCTATTGTTCATTGATATACTATTGTATTAGCATGCTCCTGTGTAACCTTTCGTTGTAGTATAAATAAGTTTTAAAG
Unaligned ( gi|22 ): GCTAAGAAAACCAAAGTTGTCGCTTTTTGTGTGAATCGTAATATTAGATTTAACTGCAATTGTGAACAATTGTCTGTACATA
Unaligned ( gi|23 ): TTTTTATTATACTTTTTTGTACCACCATGCTTCATGTGGGACCTTTTAGTGTAATAAAACAGTTTCAAAG
Unaligned ( gi|24 ): CATCGCAATGTATACGTCGTTTGAAATTTTTACCTC
Unaligned ( gi|25 ): ATGTTGAGAAGACTTAAGTTGTCATTTTTGTAG
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 7777777777777777777 111111 1111 111 1111 111 1111111 333333 111 11 22222 111 1 11 11 333333333 2222 222 2222222222222222222222222222 1 11 11111 2 222222222222222222 11111 4444444444444444444444444444444444 222 1111
lowQualScore : 8 8 1 6 6 66 9999999999999999999 6 88 6 999999 6 99 6 1 4444 6 1 44 444 1 8 1 7777 444 6666666 6 8 3 0 111111 1 444 1 11 8 8 1 44444 8 8 000 5 8 4 0 0 11 88 44 33 1 6 7 111111111 6 1 7 1 6 88 9999 666 11 1111111111111111111111111111 4 0 0 8 11 6 6 0 22222 1 66 66 4 4 6 55555 55 1 0 4 4 99 88 3 3 88888 3 3 999999999999999999 2 4 66 4 55 11111 4 1 4444444444444444444444444444444444 2 66 1 4 4 1 4 44 4 999 0 4 4 9999 66 66 8888 777 4
lowQualScore : . . . . . .. ................... . .. . ...... . .. . . .... . . .. ... . . . .... ... ....... . . . . ...... . ... . .. . . . ..... . . ... . . . . . .. .. .. .. . . . ......... . . . . . .. .... ... .. ............................ . . . . .. . . . ..... . .. .. . . . ..... .. . . . . .. .. . . ..... . . .................. . . .. . .. ..... . . .................................. . .. . . . . . .. . ... . . . .... .. .. .... ... .
lowQualScore : 0 0 4 7 7 22 7777777777777777777 7 88 7 222222 7 22 7 0 2222 7 7 00 000 0 0 0 0000 000 2222222 7 0 2 8 666666 0 000 0 00 0 0 0 44444 0 0 000 0 0 0 0 7 77 33 77 00 0 7 3 000000000 7 0 3 0 7 00 3333 000 77 8888888888888888888888888888 0 0 8 0 00 0 7 1 55555 0 11 11 4 4 7 22222 55 2 8 0 0 55 55 6 6 77777 6 6 111111111111111111 9 4 11 4 33 44444 4 7 4444444444444444444444444444444444 7 11 9 4 4 6 4 66 4 333 3 4 4 4444 11 11 3333 888 4
consensus : TATGTATGAC-ATA-TGGTGAA-CTTGGTAGAGT-ACCCATGTCTATC--TATC-T-----C---TATC-AGCGTA-AG------AA-TGA--TTGG-TTTTTGGGAA--C-GCATTATAAATG-GTAAACATGAAACGAT---CTANAC-TTTGTA----CAGCATTTT---ATATA--T----TAAATGATGG-AAATGNATATCACTCAAAAT-TAATGGTTNAA---CTGT--AT-AAAA-GATATCTTTATAATT-AAGACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAATA--ACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTA-ATGTTCTA-GATTATAGACTGTACAAGACAAC--------TA-TGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAAC-GAA-TATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-TAA--TT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---ACA-GTAATGTC----C--A--T----ATTC---T-TATGATATT
Reference ( family-5951 ) : TATGTATGAC-ATA-TGGTGAA-CTTGGTAGAGT-ACCCATGTCTATCC-TACC-T-----C---TATC-AGCGTA-AG------AA-TGA--TTGG-TTTTNGGGAA--C-GCATTATAAATG-GTAAACATGAAACGAT---CTANAC-TTTGTA----CAGCATTTT---ATATA--T----TAAATGATGG-AGATGCACATCACTCAAAA--TAATGGTTNAA---CNGC--AT-AAAA-GATANC--TATAATT-AAGACT-GGTA-A-AATCCAG-ATTTGGAAC-AATCAGCATGTAGANGCNATAAACTTTTTATTTANCTAAAAAGGTTNAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAATACAACCCTNGAAAAATNAAGTAGATAATATAAACTCATCTTATATGTTCTAGGATTATAGGNTGTACAAGACAACCTTTGGTTTNATGAAAGTTGTCT-ACC-ACTAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CNATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTG-AC-GGA-TATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-TGA--TT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAAGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAGA--ATA-GTAATGCC----C--A--T----ATTC---T-TATGATATT
gi|1 : TATGTATGACAATA-TGGAGAA-CTTAATAATGTAACCCATGCCTACCG-TGAT-TATTAAG---TATC-A-TGTA-AG------AATTGA--CTGGCTTTTTGGAAA--CGGCATCATAAATG-GT--ACCTGAAAAGAT---CTAAACTTTTGTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAAATGGATATCACTCAGAATTTAATGGTTCAA---CAGCAAAT-AAAAGGATATCTTTATAATTAAAGACT-GGTA-A-AATCAAA-ATTTGGATCAAATCAACATGTAGAAACGATAAACTTTTTATTTAT-TAAAAAGGTTAAACAGCTAGGTCATTATGTGACCC-TTTGTTGATTCAATACAACCCTGG-AAAATGAAGTAGATAATATAAATTCATCTTA-ATGTTCTAGAATTATAGACTGTACAAGACAAC--------TAATGA-------CT-ACCAACAAGATTTATTGTAT-AACTAT-TGTCCCGC-TTAGATGCAGTAAGTCAT-AATTGC-----CAATTTGAAAAGTGGGGCAGATTGT-TAAGTATTGGATAGGTCTGAAC-AAA-TATGTCCGCCCTGTAA--CAAGCAAGGATTATGGT-GATGAATTTCCAATTATC-T-GTTCAAA----CTG-TACTTTAT--TTAACCATATTTAGTTTCAGAAATAGT-T--AGA-TCTTGTCTGAAATGTCTTT----AC-TGGACTT-GTTC-A-A---TA----CT-AT-------CAACTGTAGTAATTACAAATG-AATTGTTGAGGACAGAATTACTAATT-ATAAGCCTTGCCAAAATTTATCAAGATCATAGGTAATGTC----C--A--TA---ATTC---T-TGTGAT
gi|11 : tgTT-T-GTTC-AA----ATG-TAC-TTAC--TT-----TATTT-----CAGAAA-GGTGT--ATATTCTTG-CTGAAATG-CTCT----AC-TAA--TC-GCCC-A-A------------AT---------ACTATAATAA--ACTAGTG-AACTG-TGAAGACAAATTTGCT-ATG-ATAGGCCTTGTC-AAATTTACCAAG---ACA-GCAATGTC----C--A--T----ATTC---T-TATGATATT
gi|12 : TGTATGAC-ATAATGGTGAAACTTGGTAGAGT-ACC-ATATCT-----TATC-T-----C---TACCCAGCGTACAG------AA-TCAATTTGG-TTTTGGGGAAAGC-GCATTATAACTATATAAACATGAA-CGAT---ATATA----TATAACAACAGCATTTT---ATATA--TATGTTAAAT-ATGG-AGATGCACATCACTCAA-----AATGGTTTAAAAGCTGT--ATAAAAA-GATAAC--T-TAATT-AAGACTGGGTATG-GATCCAGAAATGGGAAC-AATCactttcctgttgtgttctttcataacatccaacattgtttattattgattatatactattgtactaacatgatccatgtggagccttttagtgtaatgaaaacgttcca
gi|13 : CATAAATTGCAGTGCCTGTT--GAAACA--GGCGGATTTG--AAGTACT-GATA--------------TATGTACTCTTTGTAA--CAAACAAGAATTA-GGT-GATCAATCCC--AT-ATCCT-GTTC-AA----CTG-TAC-T--------------------------AA-AATGT--AGATTCTTG-CCAAAACG-CTTA----AC-TGA-------------------------AT-------TAGCTATATTGG----TAATG-AACTG-TGACGAAAAATTTACT-ATG-ATTGGCCTTGCC-AAATGTATC-AGG--ATA-GTAATGCC----C--A--T----GGCC---T-TATGATA
gi|14 : TGAAAATTATTTTAAA-ACTAGACTTATTGTAT-AACTTT-TGT--CGTTTTAGATGCAGT-AGTCACAAACTGC-----CAATT--GAAAAT--AGCAGGTTTT-TAAGTATT-AATGGGTCTGTAC-GGA-TATGTACTCTTTTTAA--CAAACACGAATTA-GGT-AATAGATTCC--ATTTTG-T-GTTC-AATTACATG-TAT-ATATGCTT-----TATTT
gi|17 : ggattGAA-CTTGGTACAAT-ACCTATGTCTA-----ATC-------C---TATT-AGTTCA-AG------AA-TGA--TTGG-TTTTGGGGAA--G-GCATTATAAATG-GCGAACATGAAATGATCCCCTAGAC-TTTGTA----CAGCATTTT---ATACAAGT----TAAATGct
gi|18 : TGC-----CTGTT--GAATGT--GGCAGATTTT-TTAATATA-GACAGATCTG-ATAGGT-TATG-------TGT-A--CAAATGAAAAT----GTAGATGAATTTC--A-CAT-----TTA-AA----GTG--AT-TT-T--TT-----T-TTTA-T
gi|2 : tTATGTATGAC-ATA-TGGAGAA-CTTAATAATGT-ACCCATGCCTATCCGTATTAT-----TAAGTATC-AGTGTA-AG------AA-TGA--CTGG-TTTTTGGGAA--C-GCATCATAAATG-GTACACATGAAAAGAT---CTAAAC-TTTGTA----CAGCATTTT---ACATA--T----TAAGTGATGG-AAATGGATATCACTCAGAAT-TAATGGTTCAA---CAGC--AT-AAAA-GATATCTTTATAATT-AAGACT-GGTA-A-AATCCAA-ATTTGGATC-AATCAACATGTAGAAACGAT-AACTTTTTATTTAATTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGA-TCAATA----CCTGGAAAAATGAAGTAGATAATATAAATTCATC-TA-ATGTTCTA--ATTATAGACTGTACAAGACAAC--------TA--GA-------CT-ACC-ACAAGATTTATTGTATCAACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAATTGC-----CAATT--GAAAGT--GGCAGATTGT-TAAGTATT-GATAGGTCTGAAC-AAA-TATGTCCTCCCTGTAA--CAAGCAAGGATTA-GGT-GATGAATTTC--ATTATC-T-GTTC-AA----CTG-TAC-TTAT--TTACC--TATTTAGTTTCAGAAA-GGTTT--AGATTCTTG-CTGAAATG-CTTT----AC-TGA--TT-GTTC-A-A---TA----CT-AT-------CAACTGTAGTAA--ATTAATG-AATTG-TGAGGACAGATTTACT-ATT-ATAAGCCTTGCC-AAATTTATCAAGATCATA-GTAATGTC----C--A--T----ATTC---T-TGTGATATTgatgaaagaaaaatgta
gi|3 : ----TAAATGATGG-AAATGTAT-----TCAAAA--T---GGTTAAA---CTGT--AT-AAAA-TATATC--TA-AATT-GAGTCT-GGTA-ATAATC-AG-ATTTGGAAC-AATCAGCATGTAGATGCT-TA----TTTTATTTATCTAAAAAAGTTCAACAG-----TCATTATATGACCCTTTTGTTGAT--------ACC-TTGAAAAATCAAGTA-----TATAA-CTCATCT-ATATGTTCT--GATTATAGGGTGTACAAGACAACCTTTGGTTT--TGAAAGTTGTTT-A---ACTAGATAGATTTCCC-AAG-ATGTGT--CGCATCGGGTGCAGT-AGTCATAAACTGC-----CAATC--GGAAGT--GGCAGCTTTT-TAAGTATT-GATAGGTCTGTAC-GAA-TATGTCTTCTCTGTAA--CAAACAAGAATTA-GGT-GATAAATTTC--ATGATT-T-GTTC-AA----ATG-TAC-TT-----T-----T-CTTA-TTTTAGAGA-GGTGT--CGATTCTTG-CGGAAATG-TTTG----AC-TAA--TT-GCCC-A-AATATATGCTCT-AT-------TAACTACAATAA--ACTAATG-AACTG-TGAAGACAAGTTTACT-ATG-ACAGGCCTTGCC-AAATTGATCAAG---ACA-GTAATGTC----C--A--TATTAATTC---T-TATGATATT
gi|4 : ATGTATGAC-ATA-TGGTGAA-CTTGGTAGAGT-ACTCATATCTATC-------T-----C---TACC-AGCGTA-AG------AA-TGA--TTGG-TTTCTGGGAA--C-GCATTATAAATA-ATAAACATGAAACGAT---CTATAC-TATACA----CAGCATTTTATAATATG--T----TAAAT-ATGG-AGATGCACATCACTCAA-----AATGGTTAAA---CTGT--AT-AAAA-GATAAC--T-TAATT-AAGACT-GGTA-A-TATCCAG-ATTTGGAtaccttcctgttgtgttttttcattacattcagcattaaattgtttattattgattgttctaacattccccatatggggtctttt
gi|5 : atgctaagaaaaccaaagttgtcgctttttgtatgaatcgtaatgtagacaatattagatttaactgcatttgtgaacaattgcctgtacataattgattaatttcaataattaggcatttaattttctaaaaagggttggtttaaatctaataaagatagacttgtacaacaagcaaggaaagccatgttttatgcattacgtaaatctagaaaattatgtttacctatggatatatgattcaatggttgctcctatcttgatgtatggagcagatatgtggggttatgacgatactaatatcattgaaagattctatcttgaattttgtagatgcatattgaaagtcaaaaattgtacaccgacATT--GAAAGT--GGCAGA-TTT-TAAGTATT-GATAGGTCTGAAC-GAA-TATGCCCCATCTGTAA--CAAACAAGAATTA-GGT-GATGAATTCC--ATTATT-T-GTTC-AA----ATG-TAT-TTAT-----------TTTA-TTTCAGAAA-GATGT--AAATTCTTG-CCGAAATG-TATT----AC-TAA--TT-GCCCAA-A---TA----CT-AA-------TAACTATAATGA--AATAATG-GACTG-TGAAGACAAATTTACT-ATG-TTAAGCCATGTC-AAATTTATCAAG---GCC-GTAATATC----CCAA--T----TTTC---TATATAActctcgcgactagataagtatggtcttaccttttatctat
gi|6 : -ATA-TGATGAA-CCAGGCAGAGT-AC----ATTTAT----ACG-T-----G---T-TC-A---TA-AATGCTCAAA-TGA--TTGG-TTTTTGACAA--A-AGACTGTATCTG-GTAAA-ATGAActtttcgatataactttcctgttgtgtttttctccatgtttattttcattacattcaacattgtttattcttgattgatatactaatgtactaatatgctccatgtggagccctttactgtaataaaaacgtttcaaa
gi|7 : ttgatggatttcaatatcttggtatattatttttaagaaaaggtaattttcacaagaaaataaaacttgtgcagctaacacgaaaagctatgttcagtcgattgagaaaatctaggaaactgtgtctaccagttgatattttttgcaattgtttgatgccacggatgtaacagttttgctctatgcttctgaagtatggggatacgaaaataacaatgtgattgaattgttacacttggagttctgtaaatacgcaatgaaagttaatccatctacacataatggtatttaattgtTGCAGT-TGTCATGAATTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTTTGAAA-GAA-TATATCCTCTCTGTAA--TAAACAAGAATTA-AGT-GATGAATTCC--ATTATC-C-GTTC-AA----CTG-T---TTA---AC-----TGTTTA-TTT-AAAAA-AGTGT--AGATTCTTG-CCGAAATG-CTT-------------------------------------T-------TAACTGTAGTAA--AGTAAGG-AACTG-TGTAGAAAAATTAACT-ACA-ACAGGCCTTGCC-AAATTTATCAAG---ACA-ATAATGCTAATAC--ATGT----ATTA---T-TATGATAT
gi|8 : TGTCCAGTCAGTGA---GAACGA--ACTA-GGT-GATGAATTCCC-ATTATT-TTGTT--AA----ATG-TAC-TTAT--TT-----TAT----TTTCAGAAA-GGTGTTAAGATTCTTG-CCGAAGTG-TGTTGTGAGC-GAA--GT-GTCC-ACA---TA----TTCATTTACATGTAACTATAATAC--ACTGATGAAACTG-GAAGGACACATTTACT-TTGAATAGGCCTCGCC-AA----ATCAA---------TACTG-C----C--A--TC---ATTT---T-TATGATATTcaccttccagttgtgttctttaattattcaacattgtttataattgattatcctatttgtactaacatgctctgagtggagcctttttgtgtgataaaaat
gi|9 : cTAT-CGT--AATTTTAGATCTGTT-AGTCACAGACTGC-----CTGTT--GAATGT--GGAAGATTTTATAA-TATG-GACAGATCTG-AT-AGATTATGTGATCTCTCTAATGCAAATGAAAAT---GGA-GATGAATATT--ACTACA-T-TTTT-AA----TTGAGAT-TTTT--TT-----TA-TAA-TGAAAGAAA-AATG------TTTTTA-CCTGCATG--TAT----ATATAA--CTAG--A-A-A---TG----TC-AT-------TAGTTTTGCAAA--ATTGTTC-AATAG-TGATGGCGGATTTACT-CTT-ATTGTTTTGGCC-AATTTTGT--AGA--ATA-GTAATGCC----T--A--T----ATTCAAAA-AATGATATTaccttcctgttttgttttctttcttcctctctactctttattcttcaattacatggcaacattgtttattctgattaatatactaagtattgtactaacatgcctccatgtgggccttttaatgtaataaaaagtttcaaaa
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGAAAACCAAGGTTGTCTTCTTTGTAAGGATTGCAATGTAAATAATACAAGGTTTATCTTGAATTGTGAATAGTTGTCTGTTTTTGATGAATTTCAATATTTGGGCATTAAATTTTCTCCAAAGGGTTTTAAAGCTAATATAGATAGACTTGTACAACAATAAAGGAACACCATATTCTATGTATTAAGCAAATCTACAAAACCATGTTTACCTATAAACATATTACTACAATTGTTTTGTTTAGTAGTTGATCCTATCTTGATTTATTGAGCAGAGGCGTGGGACTATGAATATAATA
Unaligned ( gi|15 ): GTTGAAAAAACCAAAGTTGTCATATTTTGTAAGAATATTGGATTTAACTTGGAATAGAGGAAAATTGTCTGTAGTTGATGAATTTCAATTATTTAGGCATTCAATTTTCTATGAAAGGTTAAAGGTAGACTTGTACAACAAGCAAGGAAAGCCATATGTTCTATGTATTTTGTAAATCTA
Unaligned ( gi|16 ): TGTTTGTCCATTTAATGTCAGTGTTTACATGTGTTTTTGTTCACCTTACTTTCAATTTTGTGGTCTTTAATGACTTTATGAGATCACTGTTATTTTCATATTTTCATTATCATTTACATTTATATCACCTATATATCACGTA
Unaligned ( gi|19 ): CATTCAACATTGTTTATTATTGCTTATTATATACTTTTTTGTACAACTATGTTCAATGTGTAGCCTTTTAATGTAATAAAAAGCTTCCAAA
Unaligned ( gi|20 ): CCTTCCTGTTGTGTTCTTTCATTACATTCAGCATTGTATATTCATGCTCCATGTGGAGCCTTTTTTAAATGTAATAAAAGTTTCA
Unaligned ( gi|21 ): CAGCATTGTCTATTGTTCATTGATATACTATTGTATTAGCATGCTCCTGTGTAACCTTTCGTTGTAGTATAAATAAGTTTTAAAG
Unaligned ( gi|22 ): GCTAAGAAAACCAAAGTTGTCGCTTTTTGTGTGAATCGTAATATTAGATTTAACTGCAATTGTGAACAATTGTCTGTACATA
Unaligned ( gi|23 ): TTTTTATTATACTTTTTTGTACCACCATGCTTCATGTGGGACCTTTTAGTGTAATAAAACAGTTTCAAAG
Unaligned ( gi|24 ): CATCGCAATGTATACGTCGTTTGAAATTTTTACCTC
Unaligned ( gi|25 ): ATGTTGAGAAGACTTAAGTTGTCATTTTTGTAG
Alignments
lowQualScore : 4444444444444444444 111 1111 111 1111111 33333 111 11 2222 111 1 11 1 3333333333 11 222 888888888888888888888888888 1 11 11111 222222222222222222 333333333333333333333333333333333333333333333 1111
lowQualScore : 8 8 1 6 6 66 3 5555555555555555555 6 11 6 6 99 6 99 6 6 3 44 444 1 1 8 7777 444 6666666 6 8 1 0 00000 1 444 1 11 8 8 1 7777 8 8 000 5 8 1 0 7 44 2 6 7 4444444444 44 6 7 7 777 333333333333333333333333333 1 0 0 8 11 6 6 0 22222 0 66 66 66 4 1 55 1 0 4 4 99 88 3 3 88888 3 3 999999999999999999 2 4 66 4 55 999999999999999999999999999999999999999999999 2 66 1 4 4 2 4 44 4 777 4 777 9999 66 66 8888 777 4
lowQualScore : . . . . . .. . ................... . .. . . .. . .. . . . .. ... . . . .... ... ....... . . . . ..... . ... . .. . . . .... . . ... . . . . . .. . . . .......... .. . . . ... ........................... . . . . .. . . . ..... . .. .. .. . . .. . . . . .. .. . . ..... . . .................. . . .. . .. ............................................. . .. . . . . . .. . ... . ... .... .. .. .... ... .
lowQualScore : 0 0 4 7 7 22 7 5555555555555555555 7 77 7 7 22 7 22 7 7 2 00 000 0 0 0 0000 000 2222222 7 0 0 8 22222 0 000 4 00 0 0 4 2222 0 0 000 0 0 0 0 3 77 0 7 3 7777777777 00 7 3 3 333 333333333333333333333333333 0 0 8 0 00 0 7 1 55555 8 11 11 33 4 1 55 2 8 0 0 55 55 6 6 77777 6 6 111111111111111111 9 4 11 4 33 999999999999999999999999999999999999999999999 7 11 9 4 4 7 4 66 4 888 4 888 4444 11 11 3333 888 4
consensus : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCTATC-----TATCTC------TATC-AGCGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAATT-AATGGTTNAA---CTGTA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
Reference ( family-5951 ) : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCTATC-----TATCTC------TATC-AGCGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAATT-AATGGTTNAA---CTGTA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
gi|1 : TATGTATGACAATA-TGGAGAA-CTTAATAATGTAACCCATGCCTACCGTGATTAT-TAAG----TATC-A-TGTA-AGAATTGA--CTGGCTTTTTGGAAA--CGGCATCATAAATG-GTA--CCTGAAAAGAT---CTAAACTTTTGTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAAATGGATATCACTCAGAATTTAATGGTTCAA---CAGCAAAT-AAAAGGATATCTTTATAATTAAAGACT-GGTA-A-AATCAAA-ATTTGGATCAAATCAACATGTAGAAACGATAAACTTTTTATTTAT-TAAAAAGGTTAAACAGCTAGGTCATTATGTGACCC-TTTGTTGATTCAATACAACCCTGG-AAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAGAATTATAGACTGTACAAGACAAC-------TAATGA-------CT-ACCAACAAGATTTATTGTAT-AACTAT-TGTCCCGC-TTAGATGCAGTAAGTCAT-AATTGC-----CAATTTGAAAAGTGGGGCAGATTGT-TAAGTATTGGATAGGTCTGAACAAATATGTCCGCCCTGTAA--CAAGCAAGGATTATGGT-GATGAATTTCCAATTATC-T-GTTCAAA----CTG-TACTTTAT--TTAACCATATTTAGTTTCAGAAATAGT-T--AGA-TCTTGTCTGAAATGTCTTT----AC-TGGACTT-GTTC-A-A---TA----CT-AT-------CAACTGTAGTAATTACAAATG-AATTGTTGAGGACAGAATTACTAATT-ATAAGCCTTGCCAAAATTTATCAAG---ATCATAGGTAATG----TCC--A--TA---ATTC---T-TGTGAT
gi|11 : tgTT-T-GTTC-AA----ATG-TAC-TTAC--TT-----TATTT-----CAGAAA-GGTGT--ATATTCTTG-CTGAAATG-CTCT----AC-T--AATC-GCCC-A-A------------AT---------ACTATAATAA--ACTAGTG-AACTG-TGAAGACAAATTTGCT-ATG-ATAGGCCTTGTC-AAATTTACCAAG---A-CA---GCAATG----TCC--A--T----ATTC---T-TATGATATT
gi|12 : TGTATGACA-TAATGGTGAAACTTGGTAGAGTA-CC-ATATCT--------TATCTC------TACCCAGCGTACAGAAT-CAATTTGG-TTTTGGGGAAAGCG-CATTATAACTATATAAACATGAA-CGAT---ATATA---T-ATAACAACAGCATTTT---ATATA--TATGTTAAAT-ATGGAGA-TGCACATCACTCAA-----AATGGTTTAAAAGCTGTA--TAAAAAG-ATAACT---TAATTAA-GACTGGGTATG-GATCCAGAAATGGGAAC-AATCactttcctgttgtgttctttcataacatccaacattgtttattattgattatatactattgtactaacatgatccatgtggagccttttagtgtaatgaaaacgttcca
gi|13 : CATAAATTGCAGTGCCTGTT--GAAACA--GGCGGATTTG--AAGTACT-GATA------------TATGTACTCTTTGTAA--CAAACAAGAATTA-GGT-GATCAATCCC--AT-ATCCT-GTTC-AA----CTG-TAC-T--------------------------AA-AATGT--AGATTCTTG-CCAAAACG-CTTA----AC-T--GA-----------------------AT-------TAGCTATATTGG----TAATG-AACTG-TGACGAAAAATTTACT-ATG-ATTGGCCTTGCC-AAATGTATCAGG---A-TA---GTAATG----CCC--A--T----GGCC---T-TATGATA
gi|14 : TGAAAATTATTTTAAA-ACTAGACTTATTGTAT-AACTTT-TGT--CGTTTTAGATGCAGT-AGTCACAAACTGC-----CAATT--GAAAAT--AGCAGGTTTT-TAAGTATT-AATGGGTCTGTACGGATATGTACTCTTTTTAA--CAAACACGAATTA-GGT-AATAGATTCC--ATTTTG-T-GTTC-AATTACATG-TAT-ATATGCTT-----TATTT
gi|17 : ggattGAA-CTTGGTACAATA-CCTATGTCTA--------ATC-C------TATT-AGTTCA-AGAAT-GA--TTGG-TTTTGGGGAA--GG-CATTATAAATG-GCGAACATGAAATGATCCCCTAGACTTT-GTA----CAGCATTTT---ATACAAGT----TAAATGct
gi|18 : TGC-----CTGTT--GAATGT--GGCAGATTTT-TTAATATA-GACAGATCTGATAGGTTATG-------TGT-A--CAAATGAAAAT----GTAGATGAATTTC--A-CAT-----TTA-AA----GTG--AT-TT-T--TT-----T-TTTA-T
gi|2 : tTATGTATGACA-TA-TGGAGAA-CTTAATAATGTA-CCCATGCCTATC-----CGTATTATTAAGTATC-AGTGTA-AGAAT-GA--CTGG-TTTTTGGGAA--CG-CATCATAAATG-GTACACATGAAAAGAT---CTAAACTTT-GTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAA-TGGATATCACTCAGAATT-AATGGTTCAA---CAGCA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAA-ATTTGGATC-AATCAACATGTAGAAACGAT-AACTTTTTATTTAATTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGA-TCAAT--A--CCTGGAAAAATGAAGTAGATAATATAAATTCATC-TAATGTTCTA--ATTATAGACTGTACAAGACAAC-------T-A-GA-------CT-ACC-ACAAGATTTATTGTATCAACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAATTGC-----CAATT--GAAAGT--GGCAGATTGT-TAAGTATT-GATAGGTCTGAACAAATATGTCCTCCCTGTAA--CAAGCAAGGATTA-GGT-GATGAATTTC--ATTATC-T-GTTC-AA----CTG-TAC-TTAT--TTACC--TATTTAGTTTCAGAAA-GGTTT--AGATTCTTG-CTGAAATG-CTTT----AC-T--GATT-GTTC-A-A---TA----CT-AT-------CAACTGTAGTAA--ATTAATG-AATTG-TGAGGACAGATTTACT-ATT-ATAAGCCTTGCC-AAATTTATCAAGATCA-TA---GTAATG----TCC--A--T----ATTC---T-TGTGATATTgatgaaagaaaaatgta
gi|3 : ----TAAATGATGGAAA-TGTAT-----TCAAAAT-----GGTTAAA---CTGTA--T-AAAAT-ATATCT--A-AATTGA-GTCT-GGTA-ATAATC-AG-ATTTGGAAC-AATCAGCATGTAGATGCT-TA----TTTTATTTATCTAAAAAAGTTCAACAG-----TCATTATATGACCCTTTTGTTGAT--------ACCTTG-AAAAATCAAGTA-----TATAA-CTCATCTATATGTTCT-G-ATTATAGGGTGTACAAGACAACCTTTGGTT-TTGAAAGTTGTTT-A---ACTAGATAGATTTCCC-AAG-ATGTGT--CGCATCGGGTGCAGT-AGTCATAAACTGC-----CAATC--GGAAGT--GGCAGCTTTT-TAAGTATT-GATAGGTCTGTACGAATATGTCTTCTCTGTAA--CAAACAAGAATTA-GGT-GATAAATTTC--ATGATT-T-GTTC-AA----ATG-TAC-TT-----T-----T-CTTA-TTTTAGAGA-GGTGT--CGATTCTTG-CGGAAATG-TTTG----AC-T--AATT-GCCC-A-AATATATGCTCT-AT-------TAACTACAATAA--ACTAATG-AACTG-TGAAGACAAGTTTACT-ATG-ACAGGCCTTGCC-AAATTGATCAAG---A-CA---GTAATG----TCC--A--TATTAATTC---T-TATGATATT
gi|4 : ATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CTCAT----ATC-----TATCTC------TACC-AGCGTA-AGAAT-GA--TTGG-TTTCTGGGAA--CG-CATTATAAATA-ATAAACATGAAACGAT---CTATACTAT-ACA----CAGCATTTTATAATATG--T----TAAAT-ATGGAGA-TGCACATCACTCAA-----AATGGTTAAA---CTGTA--T-AAAAG-ATAACT---TAATTAA-GACT-GGTA-A-TATCCAG-ATTTGGAtaccttcctgttgtgttttttcattacattcagcattaaattgtttattattgattgttctaacattccccatatggggtctttt
gi|5 : atgctaagaaaaccaaagttgtcgctttttgtatgaatcgtaatgtagacaatattagatttaactgcatttgtgaacaattgcctgtacataattgattaatttcaataattaggcatttaattttctaaaaagggttggtttaaatctaataaagatagacttgtacaacaagcaaggaaagccatgttttatgcattacgtaaatctagaaaattatgtttacctatggatatatgattcaatggttgctcctatcttgatgtatggagcagatatgtggggttatgacgatactaatatcattgaaagattctatcttgaattttgtagatgcatattgaaagtcaaaaattgtacaccgacATT--GAAAGT--GGCAGATTTT--AAGTATT-GATAGGTCTGAACGAATATGCCCCATCTGTAA--CAAACAAGAATTA-GGT-GATGAATTCC--ATTATT-T-GTTC-AA----ATG-TAT-TTAT-----------TTTA-TTTCAGAAA-GATGT--AAATTCTTG-CCGAAATG-TATT----AC-T--AATT-GCCCAA-A---TA----CT-AA-------TAACTATAATGA--AATAATG-GACTG-TGAAGACAAATTTACT-ATG-TTAAGCCATGTC-AAATTTATCAAG---G-CC---GTAATA----TCCCAA--T----TTTC---TATATAActctcgcgactagataagtatggtcttaccttttatctat
gi|6 : A-TA-TGATGAA-CCAGGCAGAGTA-C----ATTTATA-----CGTGTT------CATA-AATGCT-CAAAT-GA--TTGG-TTTTTGACAA--AA-GACTGTATCTG-GTAAA-ATGAActtttcgatataactttcctgttgtgtttttctccatgtttattttcattacattcaacattgtttattcttgattgatatactaatgtactaatatgctccatgtggagccctttactgtaataaaaacgtttcaaa
gi|7 : ttgatggatttcaatatcttggtatattatttttaagaaaaggtaattttcacaagaaaataaaacttgtgcagctaacacgaaaagctatgttcagtcgattgagaaaatctaggaaactgtgtctaccagttgatattttttgcaattgtttgatgccacggatgtaacagttttgctctatgcttctgaagtatggggatacgaaaataacaatgtgattgaattgttacacttggagttctgtaaatacgcaatgaaagttaatccatctacacataatggtatttaattgtTGCAGT-TGTCATGAATTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTTTGAAAGAATATATCCTCTCTGTAA--TAAACAAGAATTA-AGT-GATGAATTCC--ATTATC-C-GTTC-AA----CTG-T---TTA---AC-----TGTTTA-TTT-AAAAA-AGTGT--AGATTCTTG-CCGAAATG-CTT-------------------------------------T-------TAACTGTAGTAA--AGTAAGG-AACTG-TGTAGAAAAATTAACT-ACA-ACAGGCCTTGCC-AAATTTATCAAG---A-CA---ATAATGCTAATAC--ATGT----ATTA---T-TATGATAT
gi|8 : TGTCCAGTCAGTGA---GAACGA--ACTA-GGT-GATGAATTCCC-ATTATT-TTGTT--AA----ATG-TAC-TTAT--TT-----TAT----TTTCAGAAA-GGTGTTAAGATTCTTG-CCGAAGTG-TGTTGTGAGC-G--AAGT-GTCC-ACA---TA----TTCATTTACATGTAACTATAATAC--ACTGATGAAACTG-GAAGGACACATTTACT-TTGAATAGGCCTCGCC-AAAT-------------CA---ATACTG-----CC--A--TC---ATTT---T-TATGATATTcaccttccagttgtgttctttaattattcaacattgtttataattgattatcctatttgtactaacatgctctgagtggagcctttttgtgtgataaaaat
gi|9 : cTAT-CGT--AATTTTAGATCTGTT-AGTCACAGACTGC-----CTGTT--GAATGT--GGAAGATTTTATAA-TATG-GACAGATCTGATAGATTATGTGATCTCTCTAATGCAAATGAAAAT---GGA-GATGAATATT--ACTACA-T-TTTT-AA----TTGAGAT-TTTT--TT-----TA-TAA-TGAAAGAAA-AATG------TTTTTA-CCTGCATG--TAT----ATAT--AACTAG--A-A-A---TG----TC-AT-------TAGTTTTGCAAA--ATTGTTC-AATAG-TGATGGCGGATTTACT-CTT-ATTGTTTTGGCC-AATTTTGT-AGA---A-TA---GTAATG----CCT--A--T----ATTCAAAA-AATGATATTaccttcctgttttgttttctttcttcctctctactctttattcttcaattacatggcaacattgtttattctgattaatatactaagtattgtactaacatgcctccatgtgggccttttaatgtaataaaaagtttcaaaa
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGAAAACCAAGGTTGTCTTCTTTGTAAGGATTGCAATGTAAATAATACAAGGTTTATCTTGAATTGTGAATAGTTGTCTGTTTTTGATGAATTTCAATATTTGGGCATTAAATTTTCTCCAAAGGGTTTTAAAGCTAATATAGATAGACTTGTACAACAATAAAGGAACACCATATTCTATGTATTAAGCAAATCTACAAAACCATGTTTACCTATAAACATATTACTACAATTGTTTTGTTTAGTAGTTGATCCTATCTTGATTTATTGAGCAGAGGCGTGGGACTATGAATATAATA
Unaligned ( gi|15 ): GTTGAAAAAACCAAAGTTGTCATATTTTGTAAGAATATTGGATTTAACTTGGAATAGAGGAAAATTGTCTGTAGTTGATGAATTTCAATTATTTAGGCATTCAATTTTCTATGAAAGGTTAAAGGTAGACTTGTACAACAAGCAAGGAAAGCCATATGTTCTATGTATTTTGTAAATCTA
Unaligned ( gi|16 ): TGTTTGTCCATTTAATGTCAGTGTTTACATGTGTTTTTGTTCACCTTACTTTCAATTTTGTGGTCTTTAATGACTTTATGAGATCACTGTTATTTTCATATTTTCATTATCATTTACATTTATATCACCTATATATCACGTA
Unaligned ( gi|19 ): CATTCAACATTGTTTATTATTGCTTATTATATACTTTTTTGTACAACTATGTTCAATGTGTAGCCTTTTAATGTAATAAAAAGCTTCCAAA
Unaligned ( gi|20 ): CCTTCCTGTTGTGTTCTTTCATTACATTCAGCATTGTATATTCATGCTCCATGTGGAGCCTTTTTTAAATGTAATAAAAGTTTCA
Unaligned ( gi|21 ): CAGCATTGTCTATTGTTCATTGATATACTATTGTATTAGCATGCTCCTGTGTAACCTTTCGTTGTAGTATAAATAAGTTTTAAAG
Unaligned ( gi|22 ): GCTAAGAAAACCAAAGTTGTCGCTTTTTGTGTGAATCGTAATATTAGATTTAACTGCAATTGTGAACAATTGTCTGTACATA
Unaligned ( gi|23 ): TTTTTATTATACTTTTTTGTACCACCATGCTTCATGTGGGACCTTTTAGTGTAATAAAACAGTTTCAAAG
Unaligned ( gi|24 ): CATCGCAATGTATACGTCGTTTGAAATTTTTACCTC
Unaligned ( gi|25 ): ATGTTGAGAAGACTTAAGTTGTCATTTTTGTAG
Alignments
lowQualScore : 4444444444444444444 111 1111 111 1111111 33333 111 11 2222 111 1 11 1 3333333333 11 222 888888888888888888888888888 1 11 11111 222222222222222222 333333333333333333333333333333333333333333333 1111
lowQualScore : 8 8 1 6 6 66 3 5555555555555555555 6 11 6 6 99 6 99 6 6 3 44 444 1 1 8 7777 444 6666666 6 8 1 0 00000 1 444 1 11 8 8 1 7777 8 8 000 5 8 1 0 7 44 2 6 7 4444444444 44 6 7 7 777 333333333333333333333333333 1 0 0 8 11 6 6 0 22222 0 66 66 66 4 1 55 1 0 4 4 99 88 3 3 88888 3 3 999999999999999999 2 4 66 4 55 999999999999999999999999999999999999999999999 2 66 1 4 4 2 4 44 4 777 4 777 9999 66 66 8888 777 4
lowQualScore : . . . . . .. . ................... . .. . . .. . .. . . . .. ... . . . .... ... ....... . . . . ..... . ... . .. . . . .... . . ... . . . . . .. . . . .......... .. . . . ... ........................... . . . . .. . . . ..... . .. .. .. . . .. . . . . .. .. . . ..... . . .................. . . .. . .. ............................................. . .. . . . . . .. . ... . ... .... .. .. .... ... .
lowQualScore : 0 0 4 7 7 22 7 5555555555555555555 7 77 7 7 22 7 22 7 7 2 00 000 0 0 0 0000 000 2222222 7 0 0 8 22222 0 000 4 00 0 0 4 2222 0 0 000 0 0 0 0 3 77 0 7 3 7777777777 00 7 3 3 333 333333333333333333333333333 0 0 8 0 00 0 7 1 55555 8 11 11 33 4 1 55 2 8 0 0 55 55 6 6 77777 6 6 111111111111111111 9 4 11 4 33 999999999999999999999999999999999999999999999 7 11 9 4 4 7 4 66 4 888 4 888 4444 11 11 3333 888 4
consensus : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCTATC-----TATCTC------TATC-AGCGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAATT-AATGGTTNAA---CTGTA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
Reference ( family-5951 ) : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCTATC-----TATCTC------TATC-AGCGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAATT-AATGGTTNAA---CTGTA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
gi|1 : TATGTATGACAATA-TGGAGAA-CTTAATAATGTAACCCATGCCTACCGTGATTAT-TAAG----TATC-A-TGTA-AGAATTGA--CTGGCTTTTTGGAAA--CGGCATCATAAATG-GTA--CCTGAAAAGAT---CTAAACTTTTGTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAAATGGATATCACTCAGAATTTAATGGTTCAA---CAGCAAAT-AAAAGGATATCTTTATAATTAAAGACT-GGTA-A-AATCAAA-ATTTGGATCAAATCAACATGTAGAAACGATAAACTTTTTATTTAT-TAAAAAGGTTAAACAGCTAGGTCATTATGTGACCC-TTTGTTGATTCAATACAACCCTGG-AAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAGAATTATAGACTGTACAAGACAAC-------TAATGA-------CT-ACCAACAAGATTTATTGTAT-AACTAT-TGTCCCGC-TTAGATGCAGTAAGTCAT-AATTGC-----CAATTTGAAAAGTGGGGCAGATTGT-TAAGTATTGGATAGGTCTGAACAAATATGTCCGCCCTGTAA--CAAGCAAGGATTATGGT-GATGAATTTCCAATTATC-T-GTTCAAA----CTG-TACTTTAT--TTAACCATATTTAGTTTCAGAAATAGT-T--AGA-TCTTGTCTGAAATGTCTTT----AC-TGGACTT-GTTC-A-A---TA----CT-AT-------CAACTGTAGTAATTACAAATG-AATTGTTGAGGACAGAATTACTAATT-ATAAGCCTTGCCAAAATTTATCAAG---ATCATAGGTAATG----TCC--A--TA---ATTC---T-TGTGAT
gi|11 : tgTT-T-GTTC-AA----ATG-TAC-TTAC--TT-----TATTT-----CAGAAA-GGTGT--ATATTCTTG-CTGAAATG-CTCT----AC-T--AATC-GCCC-A-A------------AT---------ACTATAATAA--ACTAGTG-AACTG-TGAAGACAAATTTGCT-ATG-ATAGGCCTTGTC-AAATTTACCAAG---A-CA---GCAATG----TCC--A--T----ATTC---T-TATGATATT
gi|12 : TGTATGACA-TAATGGTGAAACTTGGTAGAGTA-CC-ATATCT--------TATCTC------TACCCAGCGTACAGAAT-CAATTTGG-TTTTGGGGAAAGCG-CATTATAACTATATAAACATGAA-CGAT---ATATA---T-ATAACAACAGCATTTT---ATATA--TATGTTAAAT-ATGGAGA-TGCACATCACTCAA-----AATGGTTTAAAAGCTGTA--TAAAAAG-ATAACT---TAATTAA-GACTGGGTATG-GATCCAGAAATGGGAAC-AATCactttcctgttgtgttctttcataacatccaacattgtttattattgattatatactattgtactaacatgatccatgtggagccttttagtgtaatgaaaacgttcca
gi|13 : CATAAATTGCAGTGCCTGTT--GAAACA--GGCGGATTTG--AAGTACT-GATA------------TATGTACTCTTTGTAA--CAAACAAGAATTA-GGT-GATCAATCCC--AT-ATCCT-GTTC-AA----CTG-TAC-T--------------------------AA-AATGT--AGATTCTTG-CCAAAACG-CTTA----AC-T--GA-----------------------AT-------TAGCTATATTGG----TAATG-AACTG-TGACGAAAAATTTACT-ATG-ATTGGCCTTGCC-AAATGTATCAGG---A-TA---GTAATG----CCC--A--T----GGCC---T-TATGATA
gi|14 : TGAAAATTATTTTAAA-ACTAGACTTATTGTAT-AACTTT-TGT--CGTTTTAGATGCAGT-AGTCACAAACTGC-----CAATT--GAAAAT--AGCAGGTTTT-TAAGTATT-AATGGGTCTGTACGGATATGTACTCTTTTTAA--CAAACACGAATTA-GGT-AATAGATTCC--ATTTTG-T-GTTC-AATTACATG-TAT-ATATGCTT-----TATTT
gi|17 : ggattGAA-CTTGGTACAATA-CCTATGTCTA--------ATC-C------TATT-AGTTCA-AGAAT-GA--TTGG-TTTTGGGGAA--GG-CATTATAAATG-GCGAACATGAAATGATCCCCTAGACTTT-GTA----CAGCATTTT---ATACAAGT----TAAATGct
gi|18 : TGC-----CTGTT--GAATGT--GGCAGATTTT-TTAATATA-GACAGATCTGATAGGTTATG-------TGT-A--CAAATGAAAAT----GTAGATGAATTTC--A-CAT-----TTA-AA----GTG--AT-TT-T--TT-----T-TTTA-T
gi|2 : tTATGTATGACA-TA-TGGAGAA-CTTAATAATGTA-CCCATGCCTATC-----CGTATTATTAAGTATC-AGTGTA-AGAAT-GA--CTGG-TTTTTGGGAA--CG-CATCATAAATG-GTACACATGAAAAGAT---CTAAACTTT-GTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAA-TGGATATCACTCAGAATT-AATGGTTCAA---CAGCA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAA-ATTTGGATC-AATCAACATGTAGAAACGAT-AACTTTTTATTTAATTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGA-TCAAT--A--CCTGGAAAAATGAAGTAGATAATATAAATTCATC-TAATGTTCTA--ATTATAGACTGTACAAGACAAC-------T-A-GA-------CT-ACC-ACAAGATTTATTGTATCAACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAATTGC-----CAATT--GAAAGT--GGCAGATTGT-TAAGTATT-GATAGGTCTGAACAAATATGTCCTCCCTGTAA--CAAGCAAGGATTA-GGT-GATGAATTTC--ATTATC-T-GTTC-AA----CTG-TAC-TTAT--TTACC--TATTTAGTTTCAGAAA-GGTTT--AGATTCTTG-CTGAAATG-CTTT----AC-T--GATT-GTTC-A-A---TA----CT-AT-------CAACTGTAGTAA--ATTAATG-AATTG-TGAGGACAGATTTACT-ATT-ATAAGCCTTGCC-AAATTTATCAAGATCA-TA---GTAATG----TCC--A--T----ATTC---T-TGTGATATTgatgaaagaaaaatgta
gi|3 : ----TAAATGATGGAAA-TGTAT-----TCAAAAT-----GGTTAAA---CTGTA--T-AAAAT-ATATCT--A-AATTGA-GTCT-GGTA-ATAATC-AG-ATTTGGAAC-AATCAGCATGTAGATGCT-TA----TTTTATTTATCTAAAAAAGTTCAACAG-----TCATTATATGACCCTTTTGTTGAT--------ACCTTG-AAAAATCAAGTA-----TATAA-CTCATCTATATGTTCT-G-ATTATAGGGTGTACAAGACAACCTTTGGTT-TTGAAAGTTGTTT-A---ACTAGATAGATTTCCC-AAG-ATGTGT--CGCATCGGGTGCAGT-AGTCATAAACTGC-----CAATC--GGAAGT--GGCAGCTTTT-TAAGTATT-GATAGGTCTGTACGAATATGTCTTCTCTGTAA--CAAACAAGAATTA-GGT-GATAAATTTC--ATGATT-T-GTTC-AA----ATG-TAC-TT-----T-----T-CTTA-TTTTAGAGA-GGTGT--CGATTCTTG-CGGAAATG-TTTG----AC-T--AATT-GCCC-A-AATATATGCTCT-AT-------TAACTACAATAA--ACTAATG-AACTG-TGAAGACAAGTTTACT-ATG-ACAGGCCTTGCC-AAATTGATCAAG---A-CA---GTAATG----TCC--A--TATTAATTC---T-TATGATATT
gi|4 : ATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CTCAT----ATC-----TATCTC------TACC-AGCGTA-AGAAT-GA--TTGG-TTTCTGGGAA--CG-CATTATAAATA-ATAAACATGAAACGAT---CTATACTAT-ACA----CAGCATTTTATAATATG--T----TAAAT-ATGGAGA-TGCACATCACTCAA-----AATGGTTAAA---CTGTA--T-AAAAG-ATAACT---TAATTAA-GACT-GGTA-A-TATCCAG-ATTTGGAtaccttcctgttgtgttttttcattacattcagcattaaattgtttattattgattgttctaacattccccatatggggtctttt
gi|5 : atgctaagaaaaccaaagttgtcgctttttgtatgaatcgtaatgtagacaatattagatttaactgcatttgtgaacaattgcctgtacataattgattaatttcaataattaggcatttaattttctaaaaagggttggtttaaatctaataaagatagacttgtacaacaagcaaggaaagccatgttttatgcattacgtaaatctagaaaattatgtttacctatggatatatgattcaatggttgctcctatcttgatgtatggagcagatatgtggggttatgacgatactaatatcattgaaagattctatcttgaattttgtagatgcatattgaaagtcaaaaattgtacaccgacATT--GAAAGT--GGCAGATTTT--AAGTATT-GATAGGTCTGAACGAATATGCCCCATCTGTAA--CAAACAAGAATTA-GGT-GATGAATTCC--ATTATT-T-GTTC-AA----ATG-TAT-TTAT-----------TTTA-TTTCAGAAA-GATGT--AAATTCTTG-CCGAAATG-TATT----AC-T--AATT-GCCCAA-A---TA----CT-AA-------TAACTATAATGA--AATAATG-GACTG-TGAAGACAAATTTACT-ATG-TTAAGCCATGTC-AAATTTATCAAG---G-CC---GTAATA----TCCCAA--T----TTTC---TATATAActctcgcgactagataagtatggtcttaccttttatctat
gi|6 : A-TA-TGATGAA-CCAGGCAGAGTA-C----ATTTATA-----CGTGTT------CATA-AATGCT-CAAAT-GA--TTGG-TTTTTGACAA--AA-GACTGTATCTG-GTAAA-ATGAActtttcgatataactttcctgttgtgtttttctccatgtttattttcattacattcaacattgtttattcttgattgatatactaatgtactaatatgctccatgtggagccctttactgtaataaaaacgtttcaaa
gi|7 : ttgatggatttcaatatcttggtatattatttttaagaaaaggtaattttcacaagaaaataaaacttgtgcagctaacacgaaaagctatgttcagtcgattgagaaaatctaggaaactgtgtctaccagttgatattttttgcaattgtttgatgccacggatgtaacagttttgctctatgcttctgaagtatggggatacgaaaataacaatgtgattgaattgttacacttggagttctgtaaatacgcaatgaaagttaatccatctacacataatggtatttaattgtTGCAGT-TGTCATGAATTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTTTGAAAGAATATATCCTCTCTGTAA--TAAACAAGAATTA-AGT-GATGAATTCC--ATTATC-C-GTTC-AA----CTG-T---TTA---AC-----TGTTTA-TTT-AAAAA-AGTGT--AGATTCTTG-CCGAAATG-CTT-------------------------------------T-------TAACTGTAGTAA--AGTAAGG-AACTG-TGTAGAAAAATTAACT-ACA-ACAGGCCTTGCC-AAATTTATCAAG---A-CA---ATAATGCTAATAC--ATGT----ATTA---T-TATGATAT
gi|8 : TGTCCAGTCAGTGA---GAACGA--ACTA-GGT-GATGAATTCCC-ATTATT-TTGTT--AA----ATG-TAC-TTAT--TT-----TAT----TTTCAGAAA-GGTGTTAAGATTCTTG-CCGAAGTG-TGTTGTGAGC-G--AAGT-GTCC-ACA---TA----TTCATTTACATGTAACTATAATAC--ACTGATGAAACTG-GAAGGACACATTTACT-TTGAATAGGCCTCGCC-AAAT-------------CA---ATACTG-----CC--A--TC---ATTT---T-TATGATATTcaccttccagttgtgttctttaattattcaacattgtttataattgattatcctatttgtactaacatgctctgagtggagcctttttgtgtgataaaaat
gi|9 : cTAT-CGT--AATTTTAGATCTGTT-AGTCACAGACTGC-----CTGTT--GAATGT--GGAAGATTTTATAA-TATG-GACAGATCTGATAGATTATGTGATCTCTCTAATGCAAATGAAAAT---GGA-GATGAATATT--ACTACA-T-TTTT-AA----TTGAGAT-TTTT--TT-----TA-TAA-TGAAAGAAA-AATG------TTTTTA-CCTGCATG--TAT----ATAT--AACTAG--A-A-A---TG----TC-AT-------TAGTTTTGCAAA--ATTGTTC-AATAG-TGATGGCGGATTTACT-CTT-ATTGTTTTGGCC-AATTTTGT-AGA---A-TA---GTAATG----CCT--A--T----ATTCAAAA-AATGATATTaccttcctgttttgttttctttcttcctctctactctttattcttcaattacatggcaacattgtttattctgattaatatactaagtattgtactaacatgcctccatgtgggccttttaatgtaataaaaagtttcaaaa
blockSeqs : . A T A . CT A TCCGTATTATTAAG C GC C . AT . AG . T A AT CCC T T . ACAA ATA TATGT G . C AATT T AAG T . A . A TTAT . G TG C A A . A A T C T TCAATA GA G A T A CTTTGGTTTTGAAAGTTGTTTA T C G . T . AGTGC . . AT . C TG A . A C CC T . TTACA A . ATTTACCTATTTAG C . TA . C TGTGAGCGAAGTGTCCACATATTCATTTACATG A . C A . A . GA . ATC . . CTAA CA TG ATTA AAA A
blockSeqs : . . A . . CC G TCTATCTC . GT . . . . . . . A AA . G T . . . AGT G . G AAT C . A . . . T T . . AT C . T . . A C . T TA A . . . G TAGACTACC A . . . T . . . . T . A . A . . . T . . A . . ACTTTATTT C . . . C GACTAATTGCCCAAATATATGCTCTAT T . T . . C . G . . . . . . . C . .
blockSeqs : . . T . . TC G TACGTGTT . GT . . . . . . . C AC . A A . . . T G . T . A . T . . . T A . . A C . A . T . . . A . . . . T . C . G . . . G . . C . . AACTGTTTA T . . . C TACTAATTGCCCAAATACTAA G . C . . G . G . . . . . . . . . .
blockSeqs : . . T . . C A TATCTC . GC . . . . . . . A C . T . . . . T . . C . A . T . . . A T . . A . . . . T . . . . T . C . A . . . C . . G . . TTTTTATAA C . . . T TACTGATTGTTCAATACTAT A . A . . A . T . . . . . . . . . .
blockSeqs : . . . . ATCC . AT . . . . . . . A . . . . . T . C . A . . . T . . C . . TTTTTTTA C . . . T TATATAACTAGAAATGTCAT A . G . . A . G . . . . . . . . . .
blockSeqs : . . . T . A . A . . . T . . A . . ATTTTAT A . . . C TACTAATCGCCCAAAT G . C . . A . G . . . . . . . . . .
blockSeqs : . . . . . A . A . . . C . . A . . TTCTTA . . . . T AACTGAAT A . T . . G . A . . . . . . . . . .
blockSeqs : . . . . . . G . . . T . . C . . ATTTTA . . . . . T C . . . . T . T . . . . . . . . . .
blockSeqs : . G . . . A . . A . . .
blockSeqs : . . . T . .
blockSeqCons : TCGTNTC************ GT ***** ** T*** ** ** ** ** NTTTTA************ C* TACTAATTGCCCAAATACTAT************************ ** *** ****
originalCons : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCTATC-----TATCTC------TATC-AGCGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAATT-AATGGTTNAA---CTGTA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTAT--TT-----TATTTA-TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCC-A-A---TA----CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
finalCons : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCTATCGTNTC------------TATC-AGTGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAA-----AATGGTTNAA---CTGTA--T-AAAAG-ATATCTT---AATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-TAC-TTNTTTTA------------TTTCAGAAA-GGTGT--AGATTCTTG-CCGAAATGC-TTTACTAATTGCCCAAATACTAT------------------------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGAAAACCAAGGTTGTCTTCTTTGTAAGGATTGCAATGTAAATAATACAAGGTTTATCTTGAATTGTGAATAGTTGTCTGTTTTTGATGAATTTCAATATTTGGGCATTAAATTTTCTCCAAAGGGTTTTAAAGCTAATATAGATAGACTTGTACAACAATAAAGGAACACCATATTCTATGTATTAAGCAAATCTACAAAACCATGTTTACCTATAAACATATTACTACAATTGTTTTGTTTAGTAGTTGATCCTATCTTGATTTATTGAGCAGAGGCGTGGGACTATGAATATAATA
Unaligned ( gi|15 ): GTTGAAAAAACCAAAGTTGTCATATTTTGTAAGAATATTGGATTTAACTTGGAATAGAGGAAAATTGTCTGTAGTTGATGAATTTCAATTATTTAGGCATTCAATTTTCTATGAAAGGTTAAAGGTAGACTTGTACAACAAGCAAGGAAAGCCATATGTTCTATGTATTTTGTAAATCTA
Unaligned ( gi|16 ): TGTTTGTCCATTTAATGTCAGTGTTTACATGTGTTTTTGTTCACCTTACTTTCAATTTTGTGGTCTTTAATGACTTTATGAGATCACTGTTATTTTCATATTTTCATTATCATTTACATTTATATCACCTATATATCACGTA
Unaligned ( gi|19 ): CATTCAACATTGTTTATTATTGCTTATTATATACTTTTTTGTACAACTATGTTCAATGTGTAGCCTTTTAATGTAATAAAAAGCTTCCAAA
Unaligned ( gi|20 ): CCTTCCTGTTGTGTTCTTTCATTACATTCAGCATTGTATATTCATGCTCCATGTGGAGCCTTTTTTAAATGTAATAAAAGTTTCA
Unaligned ( gi|21 ): CAGCATTGTCTATTGTTCATTGATATACTATTGTATTAGCATGCTCCTGTGTAACCTTTCGTTGTAGTATAAATAAGTTTTAAAG
Unaligned ( gi|22 ): GCTAAGAAAACCAAAGTTGTCGCTTTTTGTGTGAATCGTAATATTAGATTTAACTGCAATTGTGAACAATTGTCTGTACATA
Unaligned ( gi|23 ): TTTTTATTATACTTTTTTGTACCACCATGCTTCATGTGGGACCTTTTAGTGTAATAAAACAGTTTCAAAG
Unaligned ( gi|24 ): CATCGCAATGTATACGTCGTTTGAAATTTTTACCTC
Unaligned ( gi|25 ): ATGTTGAGAAGACTTAAGTTGTCATTTTTGTAG
Alignments
lowQualScore : 444444444444 111111 111 1111 111 1111111 33333 111 11 222 111 1 22 1 444444444 11 1 222 888888888888888888888888888 1 11 11111 33333333333 2222222222222222222222222222222222222222222 1111
lowQualScore : 8 8 1 6 6 66 6 88 999999999999 6 999999 6 6 99 6 99 6 6 3 44 444 1 1 8 7777 444 6666666 6 8 1 0 77777 1 444 1 11 8 8 1 888 8 8 000 5 8 1 0 7 22 2 6 7 333333333 44 6 7 6 777 333333333333333333333333333 1 0 0 8 11 6 6 0 22222 0 66 66 66 4 1 55 1 0 4 4 99 88 3 3 88888 7 666 7777 666 00000000000 7777 4 66 4 55 2222222222222222222222222222222222222222222 1 2 66 1 4 4 2 4 44 4 777 4 777 9999 66 66 8888 777 4
lowQualScore : . . . . . .. . .. ............ . ...... . . .. . .. . . . .. ... . . . .... ... ....... . . . . ..... . ... . .. . . . ... . . ... . . . . . .. . . . ......... .. . . . ... ........................... . . . . .. . . . ..... . .. .. .. . . .. . . . . .. .. . . ..... . ... .... ... ........... .... . .. . .. ........................................... . . .. . . . . . .. . ... . ... .... .. .. .... ... .
lowQualScore : 0 0 4 7 7 22 7 33 222222222222 7 222222 7 7 22 7 22 7 7 2 00 000 0 0 0 0000 000 2222222 7 0 0 8 00000 0 000 4 00 0 0 4 000 0 0 000 0 0 0 0 3 77 0 7 3 777777777 00 7 3 0 333 333333333333333333333333333 0 0 8 0 00 0 7 1 55555 8 11 11 33 4 1 55 2 8 0 0 55 55 6 6 77777 3 444 6666 444 00000000000 7777 4 11 4 33 9999999999999999999999999999999999999999999 6 7 11 9 4 4 7 4 66 4 888 4 888 4444 11 11 3333 888 4
consensus : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCT-A-TC-GTGTC------TATC-AG------CGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAATT-A--GGTTNAA---CTGTA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAA-CTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGAT-CAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCT-AATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-T---ACTTNT--TT---TA-----------TTTC---AGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCCAAATA------CT-AT-------TAACTGTAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
Reference ( family-5951 ) : TATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CCCATGTCT-A-TC-GTNTC------TATC-AG------TGTA-AGAAT-GA--TTGG-TTTTTGGGAA--CG-CATTATAAATG-GTAAACATGAAACGAT---CTANACTTT-GTA----CAGCATTTT---ATATA--T----TAAATGATGGAAA-TGNATATCACTCAAAAT-----GGTTNAA---CTGTA--T-AAAAG-ATATCTT---AATTAA-GACT-GGTA-A-AATCCAG-ATTTGGANC-AATCAACATGTAGAAACGATAAACTTTTTATTTATCTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGATTCAAT--AACCCTGGAAAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAG-ATTATAGACTGTACAAGACAAC-------T-ATGAAAGTTGTCT-ACC-ACNAGATTTATTGTAT-AACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAACTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTCTGAACGAATATGTCCTCTCTGTAA--CAAACGAGAATTA-GGT-GATGAATTCC--ATTATC-T-GTTC-AA----NTG-T---ACTTNT--TT---TA-----------TTTC---AGAAA-GGTGT--AGATTCTTG-CCGAAATG-CTTT----AC-T--AATT-GCCCAAATA------CT-AT-------TAACTATAGTAA--ACTAATG-AACTG-TGAGGACAAATTTACT-ATG-ATAGGCCTTGCC-AAATTTATCAAG---A-CA---GTAATG----TCC--A--T----ATTC---T-TATGATATT
gi|1 : TATGTATGACAATA-TGGAGAA-CTTAATAATGTAACCCATGCCT-A-CC-GTGAT------TATT-AAGTATCATGTA-AGAATTGA--CTGGCTTTTTGGAAA--CGGCATCATAAATG-GTA--CCTGAAAAGAT---CTAAACTTTTGTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAAATGGATATCACTCAGAATTTAATGGTTCAA---CAGCAAAT-AAAAGGATATCTTTATAATTAAAGACT-GGTA-A-AATCAAA-ATTTGGATCAAATCAACATGTAGAAACGATAAACTTTTTATTTAT-TAAAAAGGTTAAACAGCTAGGTCATTATGTGACCC-TTTGTTGATTCAATACAACCCTGG-AAAATGAAGTAGATAATATAAATTCATCTTAATGTTCTAGAATTATAGACTGTACAAGACAAC-------TAATGA-------CT-ACCAACAAGATTTATTGTAT-AACTAT-TGTCCCGC-TTAGATGCAGTAAGTCAT-AATTGC-----CAATTTGAAAAGTGGGGCAGATTGT-TAAGTATTGGATAGGTCTGAACAAATATGTCCGCCCTGTAA--CAAGCAAGGATTATGGT-GATGAATTTCCAATTATC-T-GTTCAAA----CTG-T---ACTTTA--TT---TAACCATATTTAGTTTC---AGAAATAGT-T--AGA-TCTTGTCTGAAATGTCTTT----AC-TGGACTT-GTTC-AATA------CT-AT-------CAACTGTAGTAATTACAAATG-AATTGTTGAGGACAGAATTACTAATT-ATAAGCCTTGCCAAAATTTATCAAG---ATCATAGGTAATG----TCC--A--TA---ATTC---T-TGTGAT
gi|11 : tgTT-T-GTTC-AA----ATG-T---ACTTAC--TT---TA-----------TTTC---AGAAA-GGTGT--ATATTCTTG-CTGAAATG-CTCT----AC-T--AATC-GCCCAAATA------CT-AT--------------AATAA--ACTAGTG-AACTG-TGAAGACAAATTTGCT-ATG-ATAGGCCTTGTC-AAATTTACCAAG---A-CA---GCAATG----TCC--A--T----ATTC---T-TATGATATT
gi|12 : TGTATGACA-TAATGGTGAAACTTGGTAGAGTA-CC-ATATCTTA-TC----TC------TACCCAG------CGTACAGAAT-CAATTTGG-TTTTGGGGAAAGCG-CATTATAACTATATAAACATGAA-CGAT---ATATA---T-ATAACAACAGCATTTT---ATATA--TATGTTAAAT-ATGGAGA-TGCACATCACTCAAAAT-----GGTTTAAAAGCTGTA--TAAAAAG-ATAACTT---AATTAA-GACTGGGTATG-GATCCAGAAATGGGAAC-AATCactttcctgttgtgttctttcataacatccaacattgtttattattgattatatactattgtactaacatgatccatgtggagccttttagtgtaatgaaaacgttcca
gi|13 : CATAAATTGCAGTGCCTGTT--GAAACA--GGCGGATTTG--AAGTACT-GATA------------TATGTACTCTTTGTAA--CAAACAAGAATTA-GGT-GATCAATCCC--AT-ATCCT-GTTC-AA----CTG-T---ACT---------------------------------AA-AATGT--AGATTCTTG-CCAAAACG-CTTA----AC-T--GA---------------------AT-------TAGCTATATTGG----TAATG-AACTG-TGACGAAAAATTTACT-ATG-ATTGGCCTTGCC-AAATGTATCAGG---A-TA---GTAATG----CCC--A--T----GGCC---T-TATGATA
gi|14 : TGAAAATTATTTTAAA-ACTAGACTTATTGTAT-AACTTT-TGT--CGTTTTAGATGCAGT-AGTCACAAACTGC-----CAATT--GAAAAT--AGCAGGTTTT-TAAGTATT-AATGGGTCTGTACGGATATGTACTCTTTTTAA--CAAACACGAATTA-GGT-AATAGATTCC--ATTTTG-T-GTTC-AATTACATG-T---ATATATGCTT---TA-----------TTTC---
gi|17 : ggattGAA-CTTGGTACAATA-CCTATGTCT-AATC-----C------TATT-AG------TTCA-AGAAT-GA--TTGG-TTTTGGGGAA--GG-CATTATAAATG-GCGAACATGAAATGATCCCCTAGACTTT-GTA----CAGCATTTT---ATACAAGT----TAAATGt
gi|18 : TGC-----CTGTT--GAATGT--GGCAGATTTT-TTAATATA-GACAGATCTGATAGGTTATG-------TGT-A--CAAATGAAAAT----GTAGATGAATTTC--A-CAT-----TTA-AA----GTGAT---TTTTTT--TT---TA-----------T
gi|2 : tTATGTATGACA-TA-TGGAGAA-CTTAATAATGTA-CCCATGCCT-A-TCCGTATTATTAAGTATC-AG------TGTA-AGAAT-GA--CTGG-TTTTTGGGAA--CG-CATCATAAATG-GTACACATGAAAAGAT---CTAAACTTT-GTA----CAGCATTTT---ACATA--T----TAAGTGATGGAAA-TGGATATCACTCAGAATTAAT-GGTTCAA---CAGCA--T-AAAAG-ATATCTTTATAATTAA-GACT-GGTA-A-AATCCAA-ATTTGGATC-AATCAACATGTAGAAACGATAA-CTTTTTATTTAATTAAAAAGGTTAAACAGCTAGGTCATTATGTGACCCTTTTGTTGAT-CAAT--A--CCTGGAAAAATGAAGTAGATAATATAAATTCATCT-AATGTTCTA--ATTATAGACTGTACAAGACAAC-------T-A-GA-------CT-ACC-ACAAGATTTATTGTATCAACTAT-TGT--CGCTTTAGATGCAGT-AGTCATAAATTGC-----CAATT--GAAAGT--GGCAGATTGT-TAAGTATT-GATAGGTCTGAACAAATATGTCCTCCCTGTAA--CAAGCAAGGATTA-GGT-GATGAATTTC--ATTATC-T-GTTC-AA----CTG-T---ACTTAT--TTACCTATTTAG------TTTC---AGAAA-GGTTT--AGATTCTTG-CTGAAATG-CTTT----AC-T--GATT-GTTC-AATA------CT-AT-------CAACTGTAGTAA--ATTAATG-AATTG-TGAGGACAGATTTACT-ATT-ATAAGCCTTGCC-AAATTTATCAAGATCA-TA---GTAATG----TCC--A--T----ATTC---T-TGTGATATTgatgaaagaaaaatgta
gi|3 : ----TAAATGATGGAAA-TGTAT-----TCAAAAT-----GGTTAAA---CTGTA--T-AAAAT-ATATCTA---AATTGA-GTCT-GGTA-ATAATC-AG-ATTTGGAAC-AATCAGCATGTAGATGCT-TA----TTTTATTTATCTAAAAAAGTTCAACAG-----TCATTATATGACCCTTTTGTTGAT--------ACCTTG-AAAAATCAAGTA-----TATAA-CTCATCTATATGTTCT-G-ATTATAGGGTGTACAAGACAACCTTTGGTT-TTGAAAGTTGTTT-A---ACTAGATAGATTTCCC-AAG-ATGTGT--CGCATCGGGTGCAGT-AGTCATAAACTGC-----CAATC--GGAAGT--GGCAGCTTTT-TAAGTATT-GATAGGTCTGTACGAATATGTCTTCTCTGTAA--CAAACAAGAATTA-GGT-GATAAATTTC--ATGATT-T-GTTC-AA----ATG-T---ACTTTT--CT---TA-----------TTTT---AGAGA-GGTGT--CGATTCTTG-CGGAAATG-TTTG----AC-T--AATT-GCCCAAATATATGCTCT-AT-------TAACTACAATAA--ACTAATG-AACTG-TGAAGACAAGTTTACT-ATG-ACAGGCCTTGCC-AAATTGATCAAG---A-CA---GTAATG----TCC--A--TATTAATTC---T-TATGATATT
gi|4 : ATGTATGACA-TA-TGGTGAA-CTTGGTAGAGTA-CTCATATCT-A-TC----TC------TACC-AG------CGTA-AGAAT-GA--TTGG-TTTCTGGGAA--CG-CATTATAAATA-ATAAACATGAAACGAT---CTATACTAT-ACA----CAGCATTTTATAATATG--T----TAAAT-ATGGAGA-TGCACATCACTCAAAAT-----GGTTAAA---CTGTA--T-AAAAG-ATAACTT---AATTAA-GACT-GGTA-A-TATCCAG-ATTTGGAtaccttcctgttgtgttttttcattacattcagcattaaattgtttattattgattgttctaacattccccatatggggtctttt
gi|5 : atgctaagaaaaccaaagttgtcgctttttgtatgaatcgtaatgtagacaatattagatttaactgcatttgtgaacaattgcctgtacataattgattaatttcaataattaggcatttaattttctaaaaagggttggtttaaatctaataaagatagacttgtacaacaagcaaggaaagccatgttttatgcattacgtaaatctagaaaattatgtttacctatggatatatgattcaatggttgctcctatcttgatgtatggagcagatatgtggggttatgacgatactaatatcattgaaagattctatcttgaattttgtagatgcatattgaaagtcaaaaattgtacaccgacATT--GAAAGT--GGCAGATTTT--AAGTATT-GATAGGTCTGAACGAATATGCCCCATCTGTAA--CAAACAAGAATTA-GGT-GATGAATTCC--ATTATT-T-GTTC-AA----ATG-T---ATTTAT--TT---TA-----------TTTC---AGAAA-GATGT--AAATTCTTG-CCGAAATG-TATT----AC-T--AATT-GCCCAAATA------CT-AA-------TAACTATAATGA--AATAATG-GACTG-TGAAGACAAATTTACT-ATG-TTAAGCCATGTC-AAATTTATCAAG---G-CC---GTAATA----TCCCAA--T----TTTC---TATATAActctcgcgactagataagtatggtcttaccttttatctat
gi|6 : A-TA-TGATGAA-CCAGGCAGAGTA-C--ATTTAT-A--C-GTGTT------CATA-AA------TGCT-CAAAT-GA--TTGG-TTTTTGACAA--AA-GACTGTATCTG-GTAAA-ATGAActtttcgatataactttcctgttgtgtttttctccatgtttattttcattacattcaacattgtttattcttgattgatatactaatgtactaatatgctccatgtggagccctttactgtaataaaaacgtttcaaa
gi|7 : ttgatggatttcaatatcttggtatattatttttaagaaaaggtaattttcacaagaaaataaaacttgtgcagctaacacgaaaagctatgttcagtcgattgagaaaatctaggaaactgtgtctaccagttgatattttttgcaattgtttgatgccacggatgtaacagttttgctctatgcttctgaagtatggggatacgaaaataacaatgtgattgaattgttacacttggagttctgtaaatacgcaatgaaagttaatccatctacacataatggtatttaattgtTGCAGT-TGTCATGAATTGC-----CAATT--GAAAGT--GGCAGATTTT-TAAGTATT-GATAGGTTTGAAAGAATATATCCTCTCTGTAA--TAAACAAGAATTA-AGT-GATGAATTCC--ATTATC-C-GTTC-AA----CTG-TTTAACT--G--TT---TA-----------TTT----AAAAA-AGTGT--AGATTCTTG-CCGAAATG-CTT-----------------------------------T-------TAACTGTAGTAA--AGTAAGG-AACTG-TGTAGAAAAATTAACT-ACA-ACAGGCCTTGCC-AAATTTATCAAG---A-CA---ATAATGCTAATAC--ATGT----ATTA---T-TATGATAT
gi|8 : TGTCCAGTCAGTGA---GAACGA--ACTA-GGT-GATGAATTCCC-ATTATT-TTGTT--AA----ATG-T---ACTTAT--TT---TAT----------TTTC---AGAAA-GGTGTTAAGATTCTTG-CCGAAGTG-TGTTGTGAGC-G--AAGT-GTCCACATA------TTCATTTACATGTAACTATAATAC--ACTGATGAAACTG-GAAGGACACATTTACT-TTGAATAGGCCTCGCC-AAAT-------------CA---ATACTG-----CC--A--TC---ATTT---T-TATGATATTcaccttccagttgtgttctttaattattcaacattgtttataattgattatcctatttgtactaacatgctctgagtggagcctttttgtgtgataaaaat
gi|9 : cTAT-CGT--AATTTTAGATCTGTT-AGTCACAGACTGC-----CTGTT--GAATGT--GGAAGATTTTATAA-TATG-GACAGATCTGATAGATTATGTGATCTCTCTAATGCAAATGAAAAT---GGA-GATGAATATT--ACTACA-T-TTTT-AA----TTGAG---ATTTTT--TT---TA-----------TAATGAAAGAAA-AATG------TTTTTA-CCTGCATG--TAT----ATAT--AACTAG---AAATG------TC-AT-------TAGTTTTGCAAA--ATTGTTC-AATAG-TGATGGCGGATTTACT-CTT-ATTGTTTTGGCC-AATTTTGT-AGA---A-TA---GTAATG----CCT--A--T----ATTCAAAA-AATGATATTaccttcctgttttgttttctttcttcctctctactctttattcttcaattacatggcaacattgtttattctgattaatatactaagtattgtactaacatgcctccatgtgggccttttaatgtaataaaaagtttcaaaa
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGAAAACCAAGGTTGTCTTCTTTGTAAGGATTGCAATGTAAATAATACAAGGTTTATCTTGAATTGTGAATAGTTGTCTGTTTTTGATGAATTTCAATATTTGGGCATTAAATTTTCTCCAAAGGGTTTTAAAGCTAATATAGATAGACTTGTACAACAATAAAGGAACACCATATTCTATGTATTAAGCAAATCTACAAAACCATGTTTACCTATAAACATATTACTACAATTGTTTTGTTTAGTAGTTGATCCTATCTTGATTTATTGAGCAGAGGCGTGGGACTATGAATATAATA
Unaligned ( gi|15 ): GTTGAAAAAACCAAAGTTGTCATATTTTGTAAGAATATTGGATTTAACTTGGAATAGAGGAAAATTGTCTGTAGTTGATGAATTTCAATTATTTAGGCATTCAATTTTCTATGAAAGGTTAAAGGTAGACTTGTACAACAAGCAAGGAAAGCCATATGTTCTATGTATTTTGTAAATCTA
Unaligned ( gi|16 ): TGTTTGTCCATTTAATGTCAGTGTTTACATGTGTTTTTGTTCACCTTACTTTCAATTTTGTGGTCTTTAATGACTTTATGAGATCACTGTTATTTTCATATTTTCATTATCATTTACATTTATATCACCTATATATCACGTA
Unaligned ( gi|19 ): CATTCAACATTGTTTATTATTGCTTATTATATACTTTTTTGTACAACTATGTTCAATGTGTAGCCTTTTAATGTAATAAAAAGCTTCCAAA
Unaligned ( gi|20 ): CCTTCCTGTTGTGTTCTTTCATTACATTCAGCATTGTATATTCATGCTCCATGTGGAGCCTTTTTTAAATGTAATAAAAGTTTCA
Unaligned ( gi|21 ): CAGCATTGTCTATTGTTCATTGATATACTATTGTATTAGCATGCTCCTGTGTAACCTTTCGTTGTAGTATAAATAAGTTTTAAAG
Unaligned ( gi|22 ): GCTAAGAAAACCAAAGTTGTCGCTTTTTGTGTGAATCGTAATATTAGATTTAACTGCAATTGTGAACAATTGTCTGTACATA
Unaligned ( gi|23 ): TTTTTATTATACTTTTTTGTACCACCATGCTTCATGTGGGACCTTTTAGTGTAATAAAACAGTTTCAAAG
Unaligned ( gi|24 ): CATCGCAATGTATACGTCGTTTGAAATTTTTACCTC
Unaligned ( gi|25 ): ATGTTGAGAAGACTTAAGTTGTCATTTTTGTAG