lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 11 66666666666666 111 1 1 1 4444444444444 2222222 1 222 444444444444444444444444 1 1 44444444444444 8888888888888 11 4444444444444444444444444444444444444 333333333333 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 5555555555555555555555555555 111111 222 1111 2222222222222222222222222222222222222222222222222222222222222222222222 2222222222 11 1111111 1 2222222222222 11111111 11 1 5555555555555555 11111111 222 1 1111 111 11 222222 33333333 1 77777 11
lowQualScore : 99 3 3 5 33 55555555555555 1 1 777 5 7 6 6 0 5 7 77 5555555555555 0 99 5 5555555 4 1 1 3 1 4 66 111 4 444444444444444444444444 3 7 3 33333333333333 2 8888 4 3333333333333 3 0 22 55 4 2222222222222222222222222222222222222 444444444444 3 33 5 4 4 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 0 33 0 5555555555555555555555555555 333333 7 111 2 0000 2 1111111111111111111111111111111111111111111111111111111111111111111111 3 5555555555 44 5 3 1 2 77 2 333 2222222 0 2222222222222 7777 33333333 11 3 55 3 2 0 8 0 1111111111111111 77777777 444 1 7777 2 2 666 00 888888 0 66666666 6 2 5 77 3 2 55555 00 6
lowQualScore : .. . . . .. .............. . . ... . . . . . . . .. ............. . .. . ....... . . . . . . .. ... . ........................ . . . .............. . .... . ............. . . .. .. . ..................................... ............ . .. . . . . ................................................................................... . . .. . ............................ ...... . ... . .... . ...................................................................... . .......... .. . . . . .. . ... ....... . ............. .... ........ .. . .. . . . . . ................ ........ ... . .... . . ... .. ...... . ........ . . . .. . . ..... .. .
lowQualScore : 88 2 5 5 88 88888888888888 2 2 222 5 0 0 7 8 7 9 99 0000000000000 1 88 0 2222222 4 0 7 3 3 4 44 333 0 888888888888888888888888 3 1 3 33333333333333 3 5555 6 3333333333333 3 8 00 22 4 7777777777777777777777777777777777777 444444444444 7 88 2 4 4 9 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 8 44 4 9999999999999999999999999999 111111 7 111 9 5555 5 4444444444444444444444444444444444444444444444444444444444444444444444 3 1111111111 22 1 1 1 9 88 8 999 3333333 5 8888888888888 7777 22222222 55 6 00 6 4 9 0 9 7777777777777777 22222222 222 8 0000 8 8 555 22 888888 8 22222222 0 0 0 00 0 5 55555 00 0
consensus : ATCATATTCAAATTGAAGTAAANTTCTT--CCAAGCGTCGC-----A-TATTTTACTAAAAAT-CGTTTGTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCC--TCGCTTA------AC--TGTTACGNCAT-CA---TACNA-GTGACGTAGAGCTATTTT-TATCCGCTAGA-CTTTCAGTTGTTTATTAC-CNN-------CGGTTCA-AGCNN-TTAATGCACTCAAATCATTTGCAGTTTGG-GCTTGATGTG--------TC-G-ATATNGATATGA----TAAATTT----A-A----AAAAGTGACCCGGATCGGTACAATATCCTC-TCG-TATTT---AG-CAATACC--CA--T--AAT-----TTCGATTCAN-A---TG---TTGGGCATTTCCAC-ATT-CACTGCCAAA-------TANTATCTAAA--CGAGG-CA-AA--A-----AAT---ATACCATCCGTGT-CAAAG-C-AGGGNAA-AAAATC-TACCATCCGTGTCAAAATCTTNCA---TCTGCAA-----CTAGT-A---CCTTT-G-G-AATATGCCTTGAT-CGAAAG-AAAA---TATCGTCATT------AAAGGC---TTGAAC--CNATTCNATATGTATAC-----------C-CGATTGGNTTTCTATNTTCTA-AATN-G---C---AA--TGCGCAT-TGGGGGCGA-TTTCAAG-GTCACAATGTAA-TGATT--AANAATATTGTAATN------------CACACTA----TA--------TATAAAA-A--CAG-GAGACTTATATATTATCAAAGGAATATT----AT-CAAA-AATA---ATTTGACAAACAGATTTAC---ACATATACAGCTTGAACG-CTTGATA------ATTGTA--------GTAAATAACGNNAAAACNTNAT--GACTTTCCCCNCGATAC
Reference ( gi|1 ) : ATTATAATCAAATTAAAGTAAAATTATT--CCAACTGCCGC-----T-TATTTTACTAAAAAT-TGTTTGTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCC--TTGCTTA------AA--TGTTACGACAT-CA---AATCA-GTGACGTAGAGTTATTTT-TATCCGCTATA-TTTTCAGTTATATATTAC-CTT-------CGGTTCA-AGCTT-CTAATGCACTAAAATCATTTGCAGTTTCG-GCTTGATGTG--------GT-A-ATATAGATATGA----TGAATTTTAAAAAA----AAAAATGACCCAGATCGGTGTAATATCCTC-TCA-AAGTT---AA-CAACACC--CA--A--ACT-----TTCAATTCTT-A---TG---TTGGGCATTTCCGC-ATT-CACTGCCAAA-------TAATATTTAAA--CTAGG-AA-AA--A-----AAT---ATGCCATCCGTGT-CAAAG-CTAGGGGAA-AAAATGATACCATCCATGCCAAAATCTTTTA---CCTGCAA-----CTA---A---CCTTT-G-G-AATATACCTTGGA-CGAAAG-AAAA---CATTGTCATT------AAAGGC---GTGAAC--CCATTCTACATTTATAT-----------C-CGCTTGAGTCTCTATTTTCTA-AATT-G---C---AA--TGCGCAT-TGGGGGCGA-TTTCAAT-GTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAG-GATACTTATGTATTATCAATGGAATATT----AT-CAAA-AATA---ATTTCAAAAACTGATTTAT---ACGTATGCAGCATTAATA-CTTGATA------ATTGTA--------GCAAATGAAGATAAAATATCATTATACTTTTCCCTTGGTAC
gi|14 : ATCACATTCAAATTGAAG-AATATTTTTTACCAAGCGTCAC-----A-TATTTTACTAATTAT-CGTTTGTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAA--CCAATCGCTTA------AC--TACTACGTCAT-CA---TTGTA-ATGACATAAAGCTATTTT-TAT
gi|20 : cacagtggggtaagttatccagagtaataactattaataatTTAT--TCAAATTGAAGTAAAAGTCTT--CCAA---------------ATCTTTTCAAGAAT-T-TTTGTCAATGTATAAACAAAGACCACGCT-ACGT
gi|3 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaatatcagcATATTCAAATTAATGTAAACTTCTT--CCAACTGCTGC-----A-TATTTTACTAAAAAC-CGCTTGTCAGTGTATAAACAACCATCGTGCC-ACAT-GGG-AAATTCC--TTCC---------AACCTGTTATATCAT-CA---AACAA-GTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTATTAC-C-A-------CTGTTCA-AGTAT-TCAATGCACTCAAATAATTTGCAATTTGA-GCTTCATGTG--------AT-G-ATATAGATATAT----TAAATTGAAGAAAACAACAAAAATTACCCGGATCGGTACTATATTCTC-TCG-TATTT---AG-CGATACC--CATCA--A-------TTCAATTC---------------------TCCGC-ATT-CACTGCAAAA-------TAATATCTAAA--CGAGGCAA-AA--G-----AAT---ATACCGTCCGTGT-TAAAATCT------------T--TA--ATC--TGC---AATTATTTA---CC----A-----TTA-------------G-G-AACATGCCTTAGT-CGAATG-AAAA---TATCGTCATT------AAAGAC---TTGAAT--CAAGTCGATATGTATAC-----------A-CGATTGGCTTTCTGTATTTTA-A---------------------AT-CGGGCGCGA-TTTCAAG-GTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CAT-GAGACTTAT
gi|2 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacagcATATTCAAATCAAAGTAAATTTCTT--TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCC--ATGCTTT------CC--TATTAC-ATATTCG---TACAA-GTGAGGTAGAACTGTTTT-TATCCGCTAGA-CTTTCAGTTGT-TATTAC-CAT-------GGAT--A-AGCAA-TTATTGCATTCAAATCATTTGCAGTTTGG-GCCTAATGT----------------ATCGATATGA----TAAATTT-----------AAAAGTGATCCGGATCGGTATAATATCCCC-TC----GTTTGTAG-CCATTTC--TA--T--AAT-----TTTGATTTAT-A---TG---TTGGGCATTTTCAC-ATT-CACTGTCAAA-------TATAATCAAAA--CGAGG-CA-AA--A-----AAT---ACGTC
gi|34 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcACAAACATCGTACC-ACGT-TGG-AAAT--------CTTA------AC--AATTACGTCAT-CA---TACAA-ACGACATTGAGTT-TTCT-Tttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|8 : TTGTGCTTACGTGGGGCAGATCCC--TTGTTT-----------CGT----ATAT-CAGTCATTCAAGTGACGTAGAGCT-TGTT-T---CGCCTTA-TCACCA------CAGCAC-T----------GGTG-A-GG------AGTGCACTCAAATTATTTGCAGTT--GAGCTTGATGTT--------TC-G-ATATAGATTTGG----ACAACTTTAAAA-----------TG-----TATCG---CAATACCCCCCTCGCAATTT---AA-CAATAAA--TA--ATAATTA----TTCAATGCAA-A---TG---TTGGACTTTTCCAC-ATTATACTCCCAAA-------TATGATCTAAA--CGATG-CATAT--A-----AATCCCA-ACCATCTGTGTCCAAAG-
gi|17 : GTGGGG-AAATTCC--TCGCTTAGTCATTAA--TTTTACGgtctt
gi|18 : tcctatctatatttttacgaGGG-AAATCCC--TTGCTTA---------------C-ACAT------GACTG-GTAACATAGA--TATTTTGTATCCGCTAGA-CTTTCAGTTGTTTATAAT-CA--------CGGTACA-GGCTA-TTAATGCATTCACATCATGTGTAGTTTtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|21 : GTTACGACAT-CA---TATCA-GTGACGTAGAGTTATTTT-TATCTGCTACA-TTTTCAGTTATTTATTAC-CTT-------CGGTTCA-AGCCT-TTAATGCACTAAAATCATTTGCAGTTTGG-GCTTGATGTgtgacacaaatatcaatagcaaaatttacaaacgtaat
gi|7 : CAT-CA---TACAA-GTGACTTAGAGATATTTC-TATTCGCTAGA-CTTTCAGTT---CATTAT-CTCTATGACACAGTTAA-A-------AATGTATTCTAATTATTTACAGTTTGG-GTTTGATAT----------C-A-ATGTA------A----TAAATCT------A----TAAACTGACCGTGACCGGTACAATATTCAC-TCG-TAGTT---GA--AATTCCATCG--A--TCT-----T--GATTTCC-G---TGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAA-------TCTTACTCAAAAGC-AGA-GA-AATTA-----AATCA-GTACCTTCCCTGT-CAAA
gi|16 : catA-GTGA-GAAGAGCTGTATT-TGTCCGATAGA-CTTCCAATTGTTTAT--C-CCA-------TGG--CACAGCTGATTAATGCAATCAAATCATTTGAAGTTT-G-GCC---------------GT-G-ATATCTGTATGA----TCAATT---GAAAA----AAAAATGACTGTGATTTGTACAATATCATC-atccaacttgcaacttgctacttaggaagtatgtattaatcgaaagaaga
gi|22 : tcataaaGACGTAGAGTTATTTT-TATCCACTAGA-CTTTCAGTTATTTATTAC-AAT--------GATTGA-AGCCT-TTAATGCACTCACATCATTTGCAGTTTGG-GCTTGATGTG--------TT-G-ATATAGATATGA----TAAgtatttagcaatttacat
gi|13 : AATTATCTT-TATCTGCTAGA-CATTCAGTTATTT-TTATACTA-------CAGTTCA-GGTGA-TTAATGCACTCAAATCATTTGCAGTTTGG-ATTTATTGTG--------TC-G-ATACAGATATGA----TAAATT------GA----AATAGTTACTGGGATCGGTATAATACCCCC-TCA-TATTT---AG-CATTATC--AA--T--AATATAAGTTCAAATATCAA---TG---TTCGACA-TTCCAC-ATT-TACTGCCAAACCAAATGTAATATTT
gi|35 : TATTTT-TATCCGCTA------------A-ATATTAC-CA--------CGGTTAA-AGCCT-TTAATGCACTCAAATCATTTGCAG
gi|6 : TAATGCACTCAAATAACTTGCAGTTTGG-GTTTGATATG---------T-AGATACAGAAAAGAGACCCGGATT----GATA----CAATATT-CTC---TCGGTACAATATTCTC-TCG-TACTT---AG-CAATACC--CA--T--AAT-----TTTAATTCAA-A---TG---TTGGGC-----CAC-ATT-CACAGCCAA------------ATTT----------------------------------CATC----T-TAACG---AGGCAAACAAAAT--TACCATCCGTGTCAAAAATTTTCAAAATATGCAA-----CTAGTTA---CCTTT-A---AGTATACCCTG-------------------TTGTCATT------AAACGC---TTGAAG------TCTACATGTATAC-----------A-CGATTGGCTTTTTAATTTCTA-AAAA-G---C---AT--TGTGCAT-TGGGGACGA-TTTCAAG-GCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CAGAGAT
gi|4 : caagcaaaAATACACTTGAATATTTTGTAGTTTGG-GCTTGACATG--------TC-G-ATATTGACATGA----TAAATCTT------------AAGTGACTGGGAT--GTGTAATcca
gi|17 : ttagttgtttatcatcacagcacagataaaATGCACTCAAACAATTTATGGTTTGG-GCTTCATATGCTTCATATGTCG-ATATTGATATTG----TGAATTTT----------AAAAGTGATCCAAACAGGTACAATtctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|39 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggTCATTTGCAGTTTGG-TCTTGATGT---------TT-G-ATATCGATATG
gi|5 : AAAGTGACCCAGATCGGTGCAATATCCTC-CCA-TATTT---AG-CAATACT--CA--T--CAT-----ATCAATTCAA-A---T----TTGGGCATTGCCAC-ATT-CACGGCC------------------------------------A-----AAT---A--------GTAT-CTAAA-C-AAGGCAA-AATATCCCACCATCCGTGTCAAAATCTTC-------------------A---A---TCGT------------CCTTGGT-TGAAAG-GAAA---TATCGTCATT------ACTCAT---CTGAAC--CAAGTCCATATGTATGC-----------A-CGGTTGGCTTTCTATATTTTA-AATA-A---C---AA--TGCACAT-TGAGAGCGA-TTTCGAG-GTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAG-GAGACATATTAATTAC--ATTGTGTATTATGAAT-CGAA-AGAA---ATTTGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGACTGTA--------GTAAATAACGAGAAAACCTCAT-----TTTCCCCACGATAC
gi|15 : AATACCCTC-TTG-TATTT---AAACAATTTC--CA--T--AAT-----GCCGATTCA--A---TA---TTGG-CATTTTTAC-ATT-CACTGCC-----------AATAT--------------------------AAT---ATAC-A--------CAAGG----GGGGA------TC-TACT-TCCCTGCTAAAATCTTAAA---TTTGCA------CTAGTTA---CTTTT-AAG-AATATGCCTTGAT-CGAAAGAAAAA---TATTATCGTC------Aattgcgta
gi|11 : -----TTTAATTTCT-AATCTG---TTGGGCATTTCCCCCATT-CCCTGCCAAC-------TGTTATCTAAA--CGAGG-CA-AA--ACCCCTACC---CTACCCTCCGTAT-CAAAtcgtttcgcctgtacca
gi|10 : aaagtaatccggacctgtaaaatagtcttcttaA-AA--A-----AATC--ATACCATCCGTGT-CAAAatcctaaatcttttggaataagcctggatcgaaataaaatatcgtgattttccccccgggccaagtggataattataatataattatatgtacacgactgaatgtctttattctaaattactctaatgcatattagggacgatttcaagataacga
gi|9 : gcGGTAA-AAAATACCACCTTCCTTGTAAAAATGTTACA---TCTGCAC-----TTA---A---CCCTT-------CAT---------CGAAAG-AAAA---TATCGTTATC------AAACGC---CTGTGC--CAAGTC-------------------------GATTGGTTTTCTACGTTCT----TTAG---C---A---TGCAAAT-TGGG----A-TTTCATG-GTCACAATGTAA-T----------------AAA--------------CACA--A----TA--------TATAAAA-A--CAG-GAGA--TATATTTTATCAAAGAAA--------AC-CAAAGAATC---ATTTGACAAACAGATTTGC---AGGTATACAGCTTGAACG-CTTGATT------AGTTTA--------GTAAACGAatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaccaagtcgatatgcacattgggggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|10 : atctaaacgacctAA-AAAATCATACCATCCGTGTCAAAATCTTTCA---TCTGCAA-----CTA---ATTACCTCTCG-G-AATATGCCTTGGT-CGAAAG-AAAA---TATCGTCATT------AAAGGC---TTGAAC--CAAGTCGATATtctaaatggcattttcc
gi|11 : gcTACCCTCCGTATCAAAATC--------------------CTA---AAT-CTTTT-G-G-AATA-AGCCTGGATCGAAAT-AAAA---TATCGTGATTTTCCCCCCGGGCCAAGTGGATAATTATAATATAATTATATGTA--------CACGACTGAATGTCTTTATTCTA-AATT-A---CTCTAA--TGCATAT-TAGGGACGA-TTTCAAgcacattgggggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|12 : aaagtaatccggacctgtaaaatagtcttcttatttaatttctaatctgttgggcatttcccccattccctgccaactgttatctaaacgaggcaaaacccctacccTACCTTTCCTTTCAATATCTTAAA---TCTGCAG-----CTAGT-A---CCTTT-G-GGAATATGTCTTGAT-TGAAAC-AAAA---TATCATCAT------------C---TTTCAC--CTCTGCCAAATCGATATGTGAACACAAAC-AGCTT---TCTTTA--TTCCA-AATG-GTTTT---AATTTGCACAC-TGGGACTGA-TTTCTAG-GTCAC--TAT---------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAA-GACACTTGTTTTTTATTAgataacga
gi|25 : ccA---CCTGCAAACACATTAGTTA---CCTTA-G-G-AA-ATTCCTTAAT-CGAAAG-AAAA---TA-TGTCGTgctcacctgagccgaagg
gi|26 : CAA-----CTATTTA---CCGTTAG-G-AATATGTCTCGAT-CAGAAG-CAAA---TATCTTCAT-------------------------CTTTAGACA---ATGT-----------C-C-------TCCCTTTATTGTA-AATG-A---C---AA--TGTGCAT-TGGGAGTGA-TTTCcgatacttgtcatgtcaaaatgcattacactgctggttttctatattctaa
gi|33 : A---A---CTTTC-G-G-AATATGCCTTAGT-CGA----AAAA---TATCGTCATT------AATGG
gi|36 : taa-G-GATATGTCTTGAT-CGAAAG-AGAA---TATTGTCATT------ttccctatgtaagccaacctagtcga
gi|2 : ttcattggcagcgaatttaccacaa-AATACGTCTTGAT-TGAAAG-AAAA---TATAGTCAT------------C---TTTAAC--CTGTGCCA-AGTTG-AT-----------T-GGCTTA----------TTCTA-AATA-G---C---AA--TGATCAC-TGGGAATGA-TTTCAAG-GTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAG-GAGACTTACATGTCATTAAAG---------------AAA-ATTA---ATTT--AAAATAGAATTATTTGACACATACGGCTTGAATG-TTTGATA------ATTGTAGTATATATGTAAATAACGTTAAAATATGAT--GACTTTTCCCTCG
gi|4 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATATGCCTTGAT-TGAAAG-AAAATATCATCTTCTTT------AA---C---CTGTCT--CCTTTCAATATGTACA--------------CAC---AGC------TTTCTA-TAT----------AA--T-C-CAT-TGGGGGTGA-TTTCAAG-GTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAG-GGGACTCATATATTATCA----AATAAA----AC-TAAA-AAGAAGCATTTGACAAACTGATTTAC---ACATATACAGcgatacaatgtatag
gi|29 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcATATGTATAC-----------CACGATTGGAATTCTATTTTCTA-AATA-A---CA--AA--TGCGAATATGGGAACAATTTTCAA
gi|31 : aagtcTTTCTTTGTTCGACAATG-G---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGgggtaaaattcaat
gi|40 : ttTCTA-AATT-G---C---AA--TGCGCAT-TGGGGGCGA-ttc
gi|10 : A--TGCACAT-TGGGGGCGA-TTTCAAA-TTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAG-GAGACTTGTATATTATCAAAGAAATCTT----AA-CAAAGAATC---GTTTGACAAACAGATTTAC---ACACATGCAGCTTGGATA-CTTGATA------ATTGTA--------GTAAATAA
gi|23 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaccaagtcgatGGGGTGA-TTTCAAG-GTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAG-GAGAC--ATATATTATTAAAGAAAttgtagtaaataacg
gi|27 : CAAG-GTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAA-GAAATTTATATATTATCAA-AGAAAATT----ATACAAA-Aactgaaaaaagaatcatttg
gi|28 : AAG-GTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAA-GAAATTTATACATTATCGA-AGAAAATT----ATACAAA-Acaagatgcgt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): ATTGACCACATGCGCTATTATTAGAAACCTCCGGGACTAACTAGATCAAGGAAAAACGAAGATCATTTGACAAACAGATTCATATGCGTTGGACGCTTGATATTGTAGTTAAAACGTTGAAATATATGACGTT
Unaligned ( gi|24 ): AGAGAAAGGAGACATACCGGTATATTATCAAAGAAAACTTGACAAAAGAATCATTATGCAAACAAATTTCTGATACACAACTTGGATACTTGATAATTGTAGTAATTACGATAAT
Unaligned ( gi|30 ): GGGAAAACGAGACTATTTGACAAACAGATTTACACATACACAGAATTGCATTAAATAAATATAAAATATTATGACATTT
Unaligned ( gi|32 ): AAATAGATCCTCCCTTCCGTGTCAAAACCCTAAATCTGCAATTATTTGCCTTTATGATTATGCCTAGATCGAAAAAA
Unaligned ( gi|37 ): CTCTCCGTGTCAATATCTTAAATGTGCACCTAGTTACGCTTAGGAATATGCC
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111 11 222222 11111 11 111 3333333333333333 2222222222222222 111111 22222222 1111111 888888888888888888888888888888888888888888888 11 22222222222222 11 555555555555555555555555555555555555555555555 11 111111111 2222222222222 11111111 1111 44444444444 1111111 11111111 11111 1 11
lowQualScore : 444 1 8 11 1 1 333333 0 5 8 5 66 1 22222 2 4 4 1 1 0 3 0 3 3 88 3 22 555 77777 6666 555 1 3 3 6666666666666666 0 2222222222222222 6 3 3 77 4 000000 2 55555555 777 2 11 4 4 4 444 4 0 4444444 4 666666666666666666666666666666666666666666666 3 0 00 3333 77777777777777 2 2 11 2 2 2 5555 33 111111111111111111111111111111111111111111111 666 11 1 2 2 1 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 555 1111 8 22222222222 7 55 7 4 1 0 777 33 66 4444444 88888888 0 22 44444 8 0 8 11 1
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . . . . . . . . . . .. . .. ... ..... .... ... . . . ................ . ................ . . . .. . ...... . ........ ... . .. . . . ... . . ....... . ............................................. . . .. .... .............. . . .. . . . .... .. ............................................. ... .. . . . . . ......... .. . . . . . . ....... . ............. .... ........ . .. ... .... . ........... . .. . . . . ... .. .. ....... ........ . .. ..... . . . .. .
lowQualScore : 000 0 0 44 8 4 000000 8 0 0 7 44 1 88888 6 0 0 0 8 8 1 4 6 3 22 8 00 444 11111 1111 333 0 1 6 5555555555555555 5 1111111111111111 7 3 3 44 0 111111 1 00000000 000 3 66 0 0 0 333 6 1 0000000 4 444444444444444444444444444444444444444444444 8 4 44 9999 22222222222222 7 7 88 5 4 2 3333 77 777777777777777777777777777777777777777777777 666 33 6 2 0 0 7 111111111 99 2 9 3 7 7 9 5555555 6 4444444444444 1111 11111111 3 66 888 7777 5 99999999999 3 00 0 0 1 8 888 00 11 8888888 11111111 4 00 66666 8 0 0 00 0
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAA-CCGTTACGTCA-TCAT-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTATTAC-CNNCGGTTCAAGCGNTT---AATGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAA-ATATTATCTAAACGAGGCA-AA--A-AATAT--ACCATCCGTGT-CAAA-C-A-GG-AAAAAAT-C-T-ACCNTCCGTGTCAAAATCTTANATC-TGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TACA-CGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC---TTA----TATATTATCAAAGAAA-ATT----AN-CAAA-A--ATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------ATTGTA--------GTAAATAACGATAAAA---TATTATGAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTGAAGTAAANTTCTT-CCAAGCGTCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAA-CTGTTACGNCA-TCAT-ACNAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTATTAC-CNNCGGTTCAAGCNNTT---AATGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATNGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------NATG---TTGGGCATTTCCAC-ATT-CACTGCCAA-ATANTATCTAAACGAGGCA-AA--A-AATAT--ACCATCCGTGT-CAAAGC-AGGGNAAAAAAT-C-T-ACCATCCGTGTCAAAATCTTNCATC-TGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TACC-CGATTGGNTTTCTATNTTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATN------------CACACTA----TA--------TATAAAA-A--CAGGAGAC---TTA----TATATTATCAAAGGAATATT----AT-CAAA-A--ATAATT-TGACAAACAGATTTAC---ACATATACAGCTTGAAC-GCTTGATA------ATTGTA--------GTAAATAACGNNAAAA---CNTNATGAC-TTT--CCCCNCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAA-ATGTTACGACA-TCAA-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATATTAC-CTTCGGTTCAAGCTTCT---AATGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AGTTAA-CAACACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAA-ATAATATTTAAACTAGGAA-AA--A-AATAT--GCCATCCGTGT-CAAAGCTAGGGGAAAAAAT-GAT-ACCATCCATGCCAAAATCTTTTACC-TGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TATC-CGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC---TTA----TGTATTATCAATGGAATATT----AT-CAAA-A--ATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------ATTGTA--------GCAAATGAAGATAAAATATCATTAT-AC-TTT--TCCCTTGGTAC
gi|10 : GCAAAAAAT-CAT-ACCATCCGTGTCAAAATCTTTCATC-TGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATGCA-CA
gi|10 : CCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC---TTG----TATATTATCAAAGAAATCTT----AA-CAAAGA--ATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTA--------GTAAATAAttgggggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-ATTTA--------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAA-CTGTTATCTAAACGAGGC------A-AA-----ACC--CC-TAC-C-------------------C-T-ACCCTCCGTATCAAAATCCTAAATC-T----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGAT-AAT------TATAATATAATTATATG-TACA-CGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGAttgtagtaaataacg
gi|12 : -C-T-ACCTTTCCTTTCAATATCTTAAATC-TGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AACA-CAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC---TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTT-TTATACTACAGTTCAGGTGATT---AATGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-ATTTAG-CATTATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAA-Agctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAA-CTACTACGTCA-TCAT-TGTAATGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-ATTTAAACAATTTCCAT-AAT-----GCCGATTCA-------ATA---TTGG-CATTTTTAC-ATT-CACTGCCAATATAATA--TACACAAGG---GG--G-GATCT--ACT-TCCCTGC-T-------------AAAAT-C-T-----T--------AAAT-TTGCA-------------CTA-GTT-AC-T-TTTAA-G-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCAT-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT--C-CCATGGCACAGCTGATT---AATGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-ATTTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAG-TCATTAttacat
gi|17 : tcctatctatatttttacgaATGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CATGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTATAAT-C-ACGGTACAGGCTATT---AATGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAAGGAAAAA---------CGAA-G--ATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------ATTGTA--------GTTAA-AACGTTGAAA---TAT-ATGAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTC-CTATTACATAT-TCGT-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-ATTAC-CATGGAT--AAGCAATT---ATTGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TTGTAG-CCATTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAA-ATATAATCAAAACGAGGCA-AA--A-AATA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA---------------AGT-TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC---TTA----CATGTCATTAAAG---------------AAA-A--TTAATT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------ATTGTAGTATATATGTAAATAACGTTAAAA---TATGATGAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaatGTTACGACA-TCAT-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTATTAC-CTTCGGTTCAAGCCTTT---AATGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTATTAC--AATGATTGAAGCCTTT---AATGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC-----A----TATATTATTAAAGAAA-ACTGA--AA-AAAG-A--ATCATT-TG
gi|24 : AGGAGAC---ATACCGGTATATTATCAAAGAAAACTT----GA-CAAA-AGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------ATTGTA--------GT-AATTACGATAA
gi|25 : agagaaACC-TGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTACA-CTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----TTAGACA--------------------ATGT----CC---------TCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT---TTA----TATATTATCAAAGAAA-ATT----ATACAAA-A--
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT---TTA----TACATTATCGAAGAAA-ATT----ATACAAA-A--caagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCAA-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTATTAC-C-ACTGTTCAAGTATTC---AATGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-ATTTAG-CGATACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAA-ATAATATCTAAACGAGGCA-AA--AGAATAT--ACCGTCCGTGT-T-------------AAAAT-C-T-----TT--------AATCT--------GCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TACA-CGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC---TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacagATT-TGACAAACAGATTTAC---ACATACACAG---------------A------ATTGCA--------TTAAATAAATATAAAA---TATTATGACATTT--
gi|31 : gggaaaacgagactTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : tt-C-T-CCCTTCCGTGTCAAAACCCTAAATC-TGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAA-CAATTACGTCA-TCAT-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TATTAC-CA-CGGTTAAAGCCTTT---AATGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaTCCGTGTCAATATCTTAAATG-TGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : ctcTCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTATCAT-CA-CAGCACAGATAAA----AATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAG-CAAT
gi|4 : A-TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CACA-CA----GCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC---TCA----TATATTATCAAATAAA-ACT----AA-AAAG-A--AGCATT-TGACAAACTGATTTAC---ACATATACAGtatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|40 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-ATTTAG-CAATACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCC---------------------------A-AATA----------GTAT-CTAAAC-AAGGCAAAATAT-C-CCACCATCCGTGTCAAAATCTTCAATC---------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGCA-CGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAAT--TACATTGT-------GTATTATGAAT-CGAA-A--GAAATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGACTGTA--------GTAAATAACGAGAAAA---CCTCAT----TTT--CCCCACGATAC
gi|6 : CAAGCAAAT---AATGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATACAGA-------------------------------AAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-ACTTAG-CAATACCCAT-AAT-----TTTAATTCA------AATG---TTGGGC-----CAC-ATT-CACAGCCAA-ATTTCATCTTAACGAGGCA-AACAA-AAT-T--ACCATCCGTGT-CAAA------------AAT-T-T-----------TCAAAAT-----AT---GCAA-----CTA-G-TTAC-C-TTT-A---AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGAAG----------TCTA-------CATGTA-TACA-CGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCAT-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCA---GTTCATTAT-CTCTA--TGACACAGTTAAAAATGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AGTT-G-AAAT-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAA-ATCTTA-CTCAA--AAGCA-GA--G-AA--------------AT-TAAATC-AG-------------T-ACCTTCCCTGTCAAAATC---CAACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT----CGT-ATATCAGTCAT-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTATCAC-CA-CAGCACTGGTGAGG---AGTGCACTCAAATTATTTGCAGTT-GAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAATTTAA-CAATA--AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAA-ATATGATCTAAACGATGCATAT--A-AATCCCAACCATCTGTGTCCAAAG
gi|9 : GGTAAAAAATAC-C-ACCTTCCTTGTAAAAATGTTACATC-TGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA-----TA----TATTTTATCAAAGAAA--------AC-CAAAGA--ATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------AGTTTA--------GTAAAgtctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 111 11 222222 11111 222222 111 3333333333333333 2222222222222222 111111 222222222 111111111111111111111111111111 22222222222222 1111 444444444444444444444444444444444444444444444 111111111 2222222222222 11111111 2222222 333333333333333333333 11111111 111 11
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 1 3 555555 3 77 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 3 3 3 3 44 4 000000 2 222222222 777 2 11 4 4 33 0 4 66 4 7777 555555555555555555555555555555 4 3 3 66 88888888888888 2 2 0000 2 2 5555 33 666666666666666666666666666666666666666666666 999 3 00 2 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 1 7777 3 3 3 2222222 3 55 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 22 666 8 11 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . . . ...... . .. .. ..... .... ... . . . ................ . ................ . . . . .. . ...... . ......... ... . .. . . .. . . .. . .... .............................. . . . .. .............. . . .... . . .... .. ............................................. ... . .. . . ......... .. . . . . . . ....... . ............. .... ........ . .. . .... . . . ....... . .. . . . ... .. . .. ..................... ........ . . .. ... . .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 0 3 333333 8 33 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 3 3 3 3 99 0 111111 1 999999999 000 3 66 0 0 00 1 4 11 4 2222 888888888888888888888888888888 3 3 8 88 88888888888888 7 7 7777 4 2 3333 77 999999999999999999999999999999999999999999999 222 1 99 0 7 111111111 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 4 1111 6 6 6 6666666 6 00 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 66 000 0 00 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTATTAC-C----NACGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATATG-ATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTC-TCGTA-TTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGAGGCA-AA--A-AATAT--ACCATCCGTGTCAAA-C---AGG--AAAAT-C-TACCNTCCGTGTCAAAATCTTAAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGACTTA----TATATTATCAA-AGAAA-A-TT----A-ACAAA-A--ATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATAAAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTATTAC-C----NNCGGTTCAAGCGNTTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATATG-ATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTC-TCGTA-TTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGAGGCA-AA--A-AATAT--ACCATCCGTGTCAAA-C---AGGAAAAAAT-C-TACCNTCCGTGTCAAAATCTTANATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGACTTA----TATATTATCAA-AGAAA-A-TT----A-NCAAA-A--ATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATAAAATATTAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATATTAC-C----TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATATG-ATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTC-TCAAA-GTTAA-CAACACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTAGGAA-AA--A-AATAT--GCCATCCGTGTCAAAGCTAGGGGAAAAAATGA-TACCATCCATGCCAAAATCTTTTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATACTTA----TGTATTATCAATGGAAT-A-TT----A-TCAAA-A--ATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATAAAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : AAAAAAT-CATACCATCCGTGTCAAAATCTTTCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : gcCCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGACTTG----TATATTATCAA-AGAAATC-TT----A-ACAAAGA--ATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTC-T--TA-TTTA--------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAACTGTTATCTAAACGAGGCA-AA--A-CCCCT--ACC----------------------------C-TACCCTCCGTATCAAAATCCTAAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : -C-TACCTTTCCTTTCAATATCTTAAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACACTTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTT-TTATAC----TACAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATATG-ATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCC-TCATA-TTTAG-CATTATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTC-TTGTA-TTTAAACAATTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCAA----TAT-------------------AATAT--AC------------A-C---AAGGGGGGAT-C-TAC-TTCCCTGCTAAAATCTTAAATTTGCA------CTA-G-TTAC-T-TTT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT--C-C----CATGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTATG-ATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--A-TCGTA-TTTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATATT-GTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTATAAT-C-----ACGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAGC-A-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A---------ACGAA-G--ATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTGAAATA-TAT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-ATTAC-C----ATGGAT--AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATATG-ATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCC-TCGTT-TGTAG-CCATTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAAATATAATCAAAACGAGGCA-AA--A-AATA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGACTTA----CATGTCATTAA-AGAAA-A-TT----A-------------ATT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTAAAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTATTAC-C----TTCGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTATTAC------AATGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATATG-ATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--A----TATATTATTAA-AGAAA-A-CTGA--A-AAAAG-A--ATCATT-TG
gi|24 : AGGAGACATACCGGTATATTATCAA-AGAAA-ACTT----G-ACAAA-AGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATAA
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----TTAGACAATG-----TC----------------------------CTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAATTTA----TATATTATCAA-AGAAA-A-TT----ATACAAA-A--
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAATTTA----TACATTATCGA-AGAAA-A-TT----ATACAAA-A--caagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTATTAC-C-----ACTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATATA-TTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTC-TCGTA-TTTAG-CGATACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAAATAATATCTAAACGAGGCA-AA--AGAATAT--ACCGTCCGTGTT-------------AAAAT-C-T------------------TTA-ATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGACTTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacagATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATAAAATATTAT--GACATTT--
gi|31 : gggaaaacgagactTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : tt-C-TCCCTTCCGTGTCAAAACCCTAAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TATTAC-C----A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaCTCTCCGTGTCAATATCTTAAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATATG-
gi|4 : TTAGTTGTTTATCAT-C----A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACATG-ATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TC-TCGTA-TTGAG-CAAT
gi|4 : A-TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGACTCA----TATATTATCAA-ATAAA-A-CT----A-AAAAG-A--AGCATT-TGACAAACTGATTTAC---ACATATACAGtatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|40 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTC-CCATA-TTTAG-CAATACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCAAATAGTATCTAAACAAGGCA-AA--A---TAT--CCCA-------------------------------CCATCCGTGTCAAAATCTTCAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATA----TTAATTA-CAT-TGTGT-A-TTATGAA-TCGAA-A--GAAATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGAAAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTC-TCGTA-CTTAG-CAATACCCAT-AAT-----TTTAATTCA------AATG---TTGGGC-----CAC-ATT-CACAGCCAAATTTCATCTTAACGAGGCA-AACAA-AAT-T--ACCATCCGTGTCAAA------------AAT-T-T----------TCAAAAT-----AT--GCAA-----CTA-G-TTAC-C-TTT-A---AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGAAG----------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTC-TATGACACAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGTA-ATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCAC-TCGTA-GTT-G-AAAT-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAATCTTA-CTCAA--AAGCA-GA--G-AA--------------ATTAAATC---AG-----------TACCTTCCCTGTCAAAATCC--AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTATCAC-C----A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAGTT-GAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATA-CCCCCCTCGCAATTTAA-CAATAA--AT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAAATATGATCTAAACGATGCATAT--A-AATCCCAACCATCTGTGTCCAA-----AGG
gi|9 : AAAAAATAC-CACCTTCCTTGTAAAAATGTTACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--TA----TATTTTATCAA-AGAAA-A-CC----A---AAG-A--ATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATtctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 111 11 222222 11111 22222 111 3333333333333333 2222222222222222 111111 222222222 55555555555555555555555555555555555555 3333333333333333333333333 555555555555555555555555555555555555555555555 111111111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 1 3 77777 88 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 3 3 3 3 44 4 000000 2 222222222 777 2 11 4 4 33 0 4 66 0 33333333333333333333333333333333333333 2 1 2 3333333333333333333333333 2 2 5555 33 777777777777777777777777777777777777777777777 77 3 2 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 3 44 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . . . ..... .. .. ..... .... ... . . . ................ . ................ . . . . .. . ...... . ......... ... . .. . . .. . . .. . ...................................... . . . ......................... . . .... .. ............................................. .. . . . ......... .. . . . . . . ....... . ............. .... ........ . .. ............ .... . . . .... . . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 0 3 66666 11 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 3 3 3 3 99 0 111111 1 999999999 000 3 66 0 0 00 1 4 11 8 44444444444444444444444444444444444444 2 8 5 1111111111111111111111111 2 2 3333 77 777777777777777777777777777777777777777777777 66 1 0 7 111111111 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 3 66 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTATTAC-C-----ACGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATATG-ATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTC-TCGTA-TTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGAGGCA-AA--AAATAT--ACCATC-GTGTCAAA---AGG------AAT-C-TACCNTCCGTGTCAAAATCTTAAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAAG-A--ATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTATTAC-C----NACGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATATG-ATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTC-TCGTA-TTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGAGGCA-AA--AAATAT--ACCATCCGTGTCAAA--CAGG----AAAAT-C-TACCNTCCGTGTCAAAATCTTAAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAAA-A--ATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATATTAC-C----TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATATG-ATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTC-TCAAA-GTTAA-CAACACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTAGGAA-AA--AAATAT--GCCATCCGTGTCAAAGCTAGGGGAAAAAATGA-TACCATCCATGCCAAAATCTTTTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAAA-A--ATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : ----AAAAT-CATACCATCCGTGTCAAAATCTTTCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : gcaaCCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAAGA--ATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTC-T--TA-TTTA--------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAACTGTTATCTAAACGAGGCA-AA--ACCCCT--ACC----------------------------C-TACCCTCCGTATCAAAATCCTAAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : -C-TACCTTTCCTTTCAATATCTTAAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTT-TTATAC----TACAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATATG-ATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCC-TCATA-TTTAG-CATTATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTC-TTGTA-TTTAAACAATTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCAA----TAT------------------AATAT--AC-A-------CAAG----GG----GGGAT-C-TAC-TTCCCTGCTAAAATCTTAAATTTGCA------CTA-G-TTAC-T-TTT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT--C-C----CATGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTATG-ATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--A-TCGTA-TTTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATATT-GTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTATAAT-C-----ACGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAGC-A-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGAA-G--ATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-ATTAC-C-----ATGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATATG-ATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCC-TCGTT-TGTAG-CCATTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAAATATAATCAAAACGAGGCA-AA--AAATA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A------------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTATTAC-C----TTCGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTATTAC------AATGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATATG-ATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAAG-A--ATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAA-AGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----T--------------------------------TAG-ACAATGTCCTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAAA-A--
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAAA-A--caagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTATTAC-C-----ACTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATATA-TTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTC-TCGTA-TTTAG-CGATACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAAATAATATCTAAACGAGGCA-AA--AGA-AT--A--------------------------------TACCGTCCGTGTTAAAATCTTTAATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGAG-A--CT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : tt-C-TCCCTTCCGTGTCAAAACCCTAAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TATTAC-C-----ACGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaCTCTCCGTGTCAATATCTTAAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATATG-
gi|4 : TTAGTTGTTTATCAT-C-----ACAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACATG-ATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TC-TCGTA-TTGAG-CAAT
gi|4 : TTAAATCTGTAA-----TCA---------------------TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAAG-A--AGCATT-TGACAAACTGATTTAC---ACATATACAGtatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|40 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTC-CCATA-TTTAG-CAATACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCAAATAGTATCTAAACAAGGCA-AA--A--TAT--CCCA-------------------------------CCATCCGTGTCAAAATCTTCAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AAG-A--A--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTC-TCGTA-CTTAG-CAATACCCAT-AAT-----TTTAATTCA------AATG---TTGGGC-----CAC-ATT-CACAGCCAAATTTCATCTTAACGAGGCA-AACAAAAT-T--ACCATCCGTGTCAAA------------AAT-T-T----------TCAAAAT-----AT--GCAA-----CTA-G-TTAC-C-TTT-A---AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGAAG----------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTC-TATGACACAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGTA-ATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCAC-TCGTA-GTT-G-AAAT-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAATCTTA-CTCAA--AAGCA-GA--GAA--------------ATTAAAT-CAG-------------TACCTTCCCTGTCAAAATCC--AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTATCAC-C-----ACAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAGTT-GAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATA-CCCCCCTCGCAATTTAA-CAATAA--AT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAAATATGATCTAAACGATGCATAT--AAATCCCAACCATCTGTGTCCAA---AGG----
gi|9 : ----AAAATAC-CACCTTCCTTGTAAAAATGTTACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--AG-A--ATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CCtctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 111 11 222222 11111 111 3333333333333333 2222222222222222 111111 222222222 77777777777777777777777777777777777777777 3333333333333333333333333 444444444444444444444444444444444444444444444444444 111111111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 3 3 88 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 6 3 3 3 66 0 3 000000 3 111111111 666 2 11 3 3 1 666 7 99999999999999999999999999999999999999999 1 3 444 4444444444444444444444444 2 2 5555 33 666666666666666666666666666666666666666666666666666 999 3 2 2 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . . .. .. ..... .... ... . . . ................ . ................ . . . . .. . . ...... . ......... ... . .. . . . ... . ......................................... . . ... ......................... . . .... .. ................................................... ... . . . . ......... .. . . . . . . ....... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 222 66 3 3 11 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 7 3 3 3 55 5 6 555555 3 111111111 444 2 66 6 6 1 444 3 44444444444444444444444444444444444444444 0 1 999 7777777777777777777777777 2 2 3333 77 999999999999999999999999999999999999999999999999999 222 1 8 0 7 111111111 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAA-TACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCA-AAAAATAT---CC---------C-AA---AGG------AATC--TACCNTCCGTGTCAAAA-TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNA------T------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAA-TACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCA-AAAAATAT--ACCATC-GTG-TCAAA---AGG------AATC--TACCNTCCGTGTCAAAA-TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNA------T------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATAT---TAC--C-TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AGTTAA-CAA-CACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTA---GGAA-AAAAATAT--GCCATCCGTG-TCAAAGCTAGGGGAAAAAATGA-TACCATCCATGCCAAAA-TCTT--TTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCA------T------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : CAAA---A--------AATCA-TACCATCCGTGTCAAAA-TCTT--TCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAA------G------TCGA-------TATG-----C-AC-ATTGG
gi|10 : gCCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-ATTTA---------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAACTGTTATCTAAACGA---GGCA-AAACCCCT--ACC----------------------------C--TACCCTCCGTATCAAAA-TCCT--AAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAA------T------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : C--TACCTTTCCTTTCAATA-TCTT--AAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTC------TGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTTTTA--TAC--T-A-CAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-ATTTAG-CAT-TATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-ATTTAAACAA-TTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCAA-TATAATATACACAA---GG--------------------------------GGG------GATC--TAC-TTCCCTGCTAAAA-TCTT--AAATTTGCA------CTA-G-TTAC-T-TTT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT---C-C--C-A-TGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-ATTTAG-CAA-Tcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTAT---AAT--C-A-CGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-AT---TAC--C-A-TGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TTGTAG-CCA-TTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAAATATAATCAAAACGA---GGCA-AAAAATA-----CGTC-TTGATTGAA---AGA------AA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTG------T------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTAT---TAC--CTT-CGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTAT---TAC--A-A-TGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCA------TG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----TTAGACAA------TG-----TC----------------------------CTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-A-CTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-ATTTAG-CGA-TACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAAATAATATCTAAACGA---GGCA-AAA----------------------------G------AATA--TACCGTCCGTGTTAAAA-TCTT--TAATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAA------G------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : ttC--TCCCTTCCGTGTCAAAA-CCCT--AAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaCTCTCCGTGTCAATA-TCTT--AAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTAT---CAT--C-A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAG-CAATTATCAAC-A--------TCTNNNNN------NNNN---NNNNNNNNNNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNN---NNNN-NNNNNNNN--NNNNNN-NNN-NNNNN---NNN------NNNN--NNNNNNNNNNNNNNNNN-NNTT--AAATCTGTAA-----TC--------------------A-TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTT------TCAA-------TATGTA-CAC-AC----AGCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAG
gi|40 : TCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-ATTTAG-CAA-TACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCAAATAGTATCTAAACAA---GGCA-AAA--TAT--CCCA--------------------------------CCATCCGTGTCAAAA-TCTT--CAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAA------G------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-ACTTAG-CAA-TACCCAT-AAT-----TTTAATTCA------AATG---TTGGGC-----CAC-ATT-CACAGCCAAATTTCATCTTAACGA---GGCA-AA--------------------CAAA---A-----------T--TACCATCCGTGTCAAAAATTTTCAAAATATGCAA-----CTA-G-TTAC-C-TTT-A---AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGAAG----------------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTCTATGAC-A-CAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AGTT-G-AAA-T-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAATCTTA-CTCAA--A---AGCAGAGAAAT-T--A---------------------------AATCAGTACCTTCCCTGTCAAAA-TCC----AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAG-TTGAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAATTTAA-CAA-TA--AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAAATATGATCTAAACGA---TGCATATAAATCCCAACCATCTGTG-TCCAA---AGG------
gi|9 : ATCTAAACGACCTGGTA-AAAAATA----------------------------------C--CACCTTCCTTGTAAAAA-TGTT--ACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CCtctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 111 11 222222 11111 111 3333333333333333 2222222222222222 111111111 222222222 3333333333333333333333333333333333333333 3333333333333333333333333 555555555555555555555555555555555555555555555555555 111111111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 6 88 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 6 3 3 777777777 3 999999 2 111111111 666 22 0 3 3 1 666 0000000000000000000000000000000000000000 1 2 33 444 7777777777777777777777777 2 2 5555 33 777777777777777777777777777777777777777777777777777 77 3 2 2 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . .. .. ..... .... ... . . . ................ . ................ . . . ......... . ...... . ......... ... .. . . . . ... ........................................ . . .. ... ......................... . . .... .. ................................................... .. . . . . ......... .. . . . . . . ....... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 222 66 7 11 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 7 3 3 333333333 6 333333 0 111111111 444 33 7 6 6 1 444 5555555555555555555555555555555555555555 0 9 99 666 0000000000000000000000000 2 2 3333 77 777777777777777777777777777777777777777777777777777 66 1 1 0 7 111111111 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-ACGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAAT-------ACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCAAAAAATAT-CC--------CA--------------AAT-C--TACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNA------T------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-ACGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAAT-------ACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCAAAAAATAT-CC--------CAAAG----------GAAT-C--TACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNA------T------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATAT---TAC--CTTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AGTTAA-CAAC-------ACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTA---GGAAAAAAATATGCCATCCGTGTCAAAGCTAGGGGAAAAAATGA--TACCATCCATGCC-AAAA--TCTT--TTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCA------T------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : AAA----------AAAT-CA-TACCATCCGTGTC-AAAA--TCTT--TCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAA------G------TCGA-------TATG-----C-AC-ATTGG
gi|10 : gcCCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-ATTTA---------------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAACTGTTATCTAAACGA---GGCAAAA----C-CC--------C--------------TACC-C--TACCCTCCGTATC-AAAA--TCCT--AAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAA------T------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : -C--TACCTTTCCTTTC-AATA--TCTT--AAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTC------TGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTTTTA--TAC--T-ACAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-ATTTAG-CATT-------ATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-ATTTAAACAAT-------TTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCAA-TATAATATACACAA---GG------------------------GG----------GGAT-C--TAC-TTCCCTGCT-AAAA--TCTT--AAATTTGCA------CTA-G-TTAC-T-TTT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT---C-C--C-ATGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-ATTTAG-CAAT-------cgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTAT---AAT--C-ACGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-AT---TAC--C-ATGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TTGTAG-CCAT-------TTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAAATATAATCAAAACGA---GGCAAAAAATA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTG------T------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTAT---TAC--CTTCGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTAT---TAC--A-ATGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCA------TG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----T--------------------------------------TAG-ACAATGTCCTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-ACTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-ATTTAG-CGAT-------ACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAAATAATATCTAAACGA---GGCAAAA-------------------------------GAAT-A--TACCGTCCGTGTT-AAAA--TCTT--TAATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAA------G------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : tt-C--TCCCTTCCGTGTC-AAAA--CCCT--AAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-ACGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaCTCTCCGTGTC-AATA--TCTT--AAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTAT---CAT--C-ACAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAG-CAATTATCAACATCTNN-NNN-----NNNNNNNNN------NNNN---NNNNNNNNNNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN-NN--------NNNNN----------NNNN-N--NNNNNNNNNNNNN-NNNN--NNTT--AAATCTGTAA-----TC--------------------A-TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTT------TCAA-------TATGTA-CAC-AC----AGCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAG
gi|40 : TCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-ATTTAG-CAAT-------ACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCAAATAGTATCTAAACAA---GGCAAAA--TAT-CC--------CA-----------------------CCATCCGTGTC-AAAA--TCTT--CAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAA------G------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-ACTTAG-CAAT-------ACCCAT-AAT-----TTTAATTCA------AATG---TTGGG-----CCAC-ATT-CACAGCCAAATTTCATCTTAACGA---GGCAAA-----------------CAA-------------AAT----TACCATCCGTGTCAAAAA--TTTTCAAAATATGCAA-----CTA-GTT-AC-C-TTT---A-AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGA----A------G------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTCTATGAC-ACAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AGTT-G-AAAT--------TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAATCTTA-CTCAA--A---AGCAGAGAA-AT-T------------------------AAAT-CAGTACCTTCCCTGTC-AAAA--TCC----AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-ACAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAG-TTGAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAATTTAA-CAAT-------A--AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAAATATGATCTAAACGA---TGCATATAA-AT-CC--------CA----------------------ACCATCTGTGTC-CAAAGGTCTT--
gi|9 : ATCTAAACGACCTGGTAAAAAATAC-C---------------------------------ACCTTCCTTGTA-AAAA--TGTT--ACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111 11 222222 11111 111 2222222222222222 2222222222222222 1111111 1111111 222222222 99999999999999999999999999999999999999999 33333333333333333333333333 555555555555555555555555555555555555555555555 111111111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 3 3 88 33 77777 6666 555 5 3 3 6666666666666666 2 2222222222222222 6 3 0000000 33 0000000 3 999999 2 111111111 666 22 0 3 3 1 666 22222222222222222222222222222222222222222 1 2 33 444 55555555555555555555555555 2 2 5555 33 777777777777777777777777777777777777777777777 77 3 2 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . . .. .. ..... .... ... . . . ................ . ................ . . ....... .. ....... . ...... . ......... ... .. . . . . ... ......................................... . . .. ... .......................... . . .... .. ............................................. .. . . . ......... .. . . . . . . ....... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 222 66 3 3 11 99 11111 1111 333 9 1 6 8888888888888888 4 1111111111111111 7 3 8888888 66 2222222 6 333333 0 111111111 444 33 7 6 6 1 444 66666666666666666666666666666666666666666 0 9 99 666 66666666666666666666666666 2 2 3333 77 777777777777777777777777777777777777777777777 66 1 0 7 111111111 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-AT-------TTAG-CAATACC----CAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCAAAAAATAT-----CC----CAAA-C--TA---------------CCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-T-TT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-AT-------TTAG-CAATACC----CAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCAAAAAATAT-----CC----CAAATC--TA---------------CCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-T-TT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATAT---TAC--C-TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AG-------TTAA-CAACACC----CAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTA---GGAAAAAAATATGCCATCCGTGTCAAAGC--TAGGGGAAAAAATGATACCATCCATGCC-AAAA--TCTT--TTACCTGCAA-----CTA-----AC-C-T-TT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : GCAAAAAAT-------------CA------TA---------------CCATCCGTGTC-AAAA--TCTT--TCATCTGCAA-----CTA-ATT-AC-C-TCTC-G-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : CCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-AT-------TTA------------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAACTGTTATCTAAACGA---GGCAAAA----C-----CC----CTACCC--TA---------------CCCTCCGTATC-AAAA--TCCT--AAATCT----------------------T-TT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : C--TA---------------CCTTTCCTTTC-AATA--TCTT--AAATCTGCAG-----CTA-G-T-AC-C-T-TT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTTTTA--TAC--T-A-CAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-AT-------TTAG-CATTATC----AAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-AT-------TTAAACAATTTC----CAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCAA-TATAATATACACAA---GGGGGGA--------------------TC--TA---------------C-TTCCCTGCT-AAAA--TCTT--AAATTTGCA------CTA-G-TTAC-T-T-TT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT---C-C--C-A-TGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-AT-------TTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTAT---AAT--C-A-CGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-AT---TAC--C-A-TGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TT-------GTAG-CCATTTC----TAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAAATATAATCAAAACGA---GGCAAAAAATA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTAT---TAC--CTT-CGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTAT---TAC--A-A-TGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-T-TA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-G-TTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----T--------------------------------TAG-ACAATGTCCTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-A-CTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-AT-------TTAG-CGATACC----CAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAAATAATATCTAAACGA---GGCAAAA-----------------GAATA--TA---------------CCGTCCGTGTT-AAAA--TCTT--TAATCTGCAA-----TTATT-T-AC-CAT-TA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : ttC--TC---------------CCTTCCGTGTC-AAAA--CCCT--AAATCTGCAA-----TTATT-T-GC-C-T-TT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-T-TC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaa---------------CTCTCCGTGTC-AATA--TCTT--AAATGTGCAC-----CTA-GTT-ACGC-T-TA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTAT---CAT--C-A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT-----AA-------------GTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAGCAATTAT-CAACATCTNNNNNN-NNN-----NNNNNNNNN------NNNN---NNNNNNNNNNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN-----NN----NNNNNN--NN---------------NNNNNNNNNNN-NNNN--NNTT--AAATCTGTAA-----TCA----------------------TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAG
gi|40 : TCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-AT-------TTAG-CAATACT----CAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCAAATAGTATCTAAACAA---GGCAAAA--TAT-----CC----CA-----------------------CCATCCGTGTC-AAAA--TCTT--CAATC--------------G-T----------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-AC-------TTAG-CAATACC----CAT-AAT-----TTTAATTCA------AATG---TTGGG-----CCAC-ATT-CACAGCCAAATTTCATCTTAACGA---GGCAAA-----------------CAAAAT--TA---------------CCATCCGTGTCAAAAA--TTTTCAAAATATGCAA-----CTA-GTT-AC-C-T-TT---A-AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGA----AG------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTCTATGAC-A-CAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AG-------TT-G-AAAT-TC----CATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAATCTTA-CTCAA--A---AGCAGAGAA-AT-----------TAAATCAGTA---------------CCTTCCCTGTC-AAAA--TCC----AACTTGCAA-----CTT-GCT-A--C-T-TA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAG-TTGAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAAT-------TTAA-CAATA------AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAAATATGATCTAAACGA---TGCATATAA-AT-----CC----CA-------A---------------CCATCTGTGTC-CAAAGGTCTT--
gi|9 : ATCTAAACGACCTGGTAAAAAATAC-----C--------------A---------------CCTTCCTTGTA-AAAA--TGTT--ACATCTGCA-----------------C-T-T------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111 11 222222 11111 111 3333333333333333 2222222222222222 111111 222222222 9999999999999999999999999999999999999999999 3333333333333333333333333 444444444444444444444444444444444444444444444 111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 3 3 88 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 6 3 3 77 4 000000 2 222222222 777 2 0 4 4 1 777 3 7777777777777777777777777777777777777777777 1 3 44 444 5555555555555555555555555 2 2 5555 33 666666666666666666666666666666666666666666666 999 3 00 2 2 22 222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . . .. .. ..... .... ... . . . ................ . ................ . . . .. . ...... . ......... ... . . . . . ... . ........................................... . . .. ... ......................... . . .... .. ............................................. ... . .. . . .. ... .. . . . . . . ....... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 222 66 3 3 11 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 7 3 3 44 0 111111 1 999999999 000 3 7 0 0 1 000 6 9999999999999999999999999999999999999999999 0 1 22 666 4444444444444444444444444 2 2 3333 77 999999999999999999999999999999999999999999999 222 1 99 0 7 77 999 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCA-AAA-AAT---ATCCC----------A--CTA---------------CCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNGC---AAT--GCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCAAATATTATCTAAACGA---GGCA-AAA-AAT---ATCCC----------AAACTA---------------CCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNGC---AAT--GCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATAT---TAC--C-TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AGTTAA-CAACACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTA---GGAA-AAA-AAT---ATGCCATCCGTGTCAAAGCTAGGGGAAAAAATGATACCATCCATGCC-AAAA--TCTT--TTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTGC---AAT--GCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : GCA-AAA-AAT-------C----------A---TA---------------CCATCCGTGTC-AAAA--TCTT--TCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : CCA-AGTCGA---TAT--GCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-ATTTA--------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCAACTGTTATCTAAACGA---GGCA-AAA--------CCCCT---------ACCCTA---------------CCCTCCGTATC-AAAA--TCCT--AAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTACTCTAAT--GCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : CTA---------------CCTTTCCTTTC-AATA--TCTT--AAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTTAATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTTTTA--TAC--T-A-CAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-ATTTAG-CATTATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCAAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-ATTTAAACAATTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCAA-TATAATATACACAA---GG---GGG-GAT---------------------CTA---------------C-TTCCCTGCT-AAAA--TCTT--AAATTTGCA------CTA-G-TTAC-T-TTT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT---C-C--C-A-TGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-ATTTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTAT---AAT--C-A-CGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-AT---TAC--C-A-TGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TTGTAG-CCATTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCAAATATAATCAAAACGA---GGCA-AAA-AAT---A
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAGC---AAT--GATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTAT---TAC--CTT-CGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTAT---TAC--A-A-TGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----TTAGACAATG-----TC----------------------------CTCCCTTTATTGTA-AATGAC---AAT--GTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAACA--AAT--GCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-A-CTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-ATTTAG-CGATACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAAAATAATATCTAAACGA---GGCA-AAAGAAT---A------------------TA---------------CCGTCCGTGTT-AAAA--TCTT--TAATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGGC---AAT--GAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : ttCTC---------------CCTTCCGTGTC-AAAA--CCCT--AAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaa---------------CTCTCCGTGTC-AATA--TCTT--AAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTAT---CAT--C-A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAG-CAAT
gi|4 : TT--AAATCTGTAA-----TCA---------------------TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC-------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAGtatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|40 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCTA-AATTGC---AAT--GCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-ATTTAG-CAATACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCAAATAGTATCTAAACAA---GGCA-AAA---T---ATCCC----------A--------------------CCATCCGTGTC-AAAA--TCTT--CAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAAC---AAT--GCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-ACTTAG-CAATACCCAT-AAT-----TTTAATTCA------AATG---TTGGG-----CCAC-ATT-CACAGCCAAATTTCATCTTAACGA---GGCA-AA-----------CA----------AAATTA---------------CCATCCGTGTCAAAAA--TTTTCAAAATATGCAA-----CTA-GTT-AC-C-TTT---A-AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGA----AG------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAGC---ATT--GTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTCTATGAC-A-CAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AGTT-G-AAAT-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTAAATCTTA-CTCAA--A---AGCAGAGA-AATTAAATC--------------AGTA---------------CCTTCCCTGTC-AAAA--TCC----AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAG-TTGAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAATTTAA-CAATA--AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCAAATATGATCTAAACGA---TGCA-TAT-AA----ATCCC----------A----A---------------CCATCTGTGTC-CAAAGGTCTT--
gi|9 : ATCTAAACGACCTGGTA-AAA-AAT---ACC-----------------A---------------CCTTCCTTGTA-AAAA--TGTT--ACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAGC---A-T--GCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111 11 222222 11111 111 3333333333333333 2222222222222222 111111 222222222 33333333333333333333333 111111111 55555555 3333333333333333333333333 444444444444444444444444444444444444444444444 111111111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 3 3 88 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 6 3 3 77 4 000000 2 222222222 777 2 0 4 4 77777777777777777777777 777777777 4 777 0 5555 55555555 1 3 44 444 2222222222222222222222222 2 2 5555 33 666666666666666666666666666666666666666666666 999 3 00 2 2 222222222 33 2 2 0 2 2 2 6666666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . . .. .. ..... .... ... . . . ................ . ................ . . . .. . ...... . ......... ... . . . . ....................... ......... . ... . .... ........ . . .. ... ......................... . . .... .. ............................................. ... . .. . . ......... .. . . . . . . ....... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 222 66 3 3 11 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 7 3 3 44 0 111111 1 999999999 000 3 7 0 0 00000000000000000000000 222222222 0 000 5 5555 55555555 0 1 22 666 5555555555555555555555555 2 2 3333 77 999999999999999999999999999999999999999999999 222 1 99 0 7 111111111 99 2 9 3 7 7 9 5555555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCC-----------------------AAATAT--------TATCTAAACG-A---GGCAAA--A-AATAT--CACTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCC-----------------------AAATAT--------TATCTAAACG-A---GGCAAA--A-AATATCCCACTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATAT---TAC--C-TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AGTTAA-CAACACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTAGGAAAAAAATATGCCATCCGTGTCAAAGCT-A---GGGGAA--A-AA-AT---GATACCATCCATGCC-AAAA--TCTT--TTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : GCAAA--A-AAT----CA-TACCATCCGTGTC-AAAA--TCTT--TCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : CCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-ATTTA--------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCC-----------------------AACTGT--------TATCTAAACG-A---GGCAAA--A-CCCCTACC-CTACCCTCCGTATC-AAAA--TCCT--AAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : CTACCTTTCCTTTC-AATA--TCTT--AAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTTTTA--TAC--T-A-CAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-ATTTAG-CATTATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCC-----------------------AAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-ATTTAAACAATTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCC------------------------AATAT--------AATATACACA-A---GG--GG--G-GAT------CTA-CTTCCCTGCT-AAAA--TCTT--AAATTTGC-A-----CTA-GTT-AC-T-TTTAA-G-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT---C-C--C-A-TGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-ATTTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTAT---AAT--C-A-CGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-AT---TAC--C-A-TGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TTGTAG-CCATTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTC-----------------------AAATAT--------AATCAAAACG-A---GGCAAA--A-AATA
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTAT---TAC--CTT-CGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTAT---TAC--A-A-TGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----TTAGACAATG-----TC----------------------------CTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-A-CTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-ATTTAG-CGATACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCA-----------------------AAATAA--------TATCTAAACG-A---GGCAAA--AGAATA------TACCGTCCGTGTT-AAAA--TCTT--TAATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : ttCTCCCTTCCGTGTC-AAAA--CCCT--AAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : aaatagatc-AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaCTCTCCGTGTC-AATA--TCTT--AAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTAT---CAT--C-A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAG-CAAT
gi|4 : TT--AAATCTGTAA-----TCA---------------------TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAGtatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|40 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-ATTTAG-CAATACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCC-----------------------AAATAG--------TATCTAAACA-A---GGCAAA--A---TATCCCAC---CATCCGTGTC-AAAA--TCTT--CAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-ACTTAG-CAATACCCAT-AAT-----TTTAATTCA------AATG---TTGGG-----CCAC-ATT-CACAGCC-----------------------AAATTT--------CATCTTAACG-A---GGCAAA--C-AAAAT-----TACCATCCGTGTCAAAAA--TTTTCAAAATATGCAA-----CTA-GTT-AC-C-TTT---A-AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGA----AG------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTCTATGAC-A-CAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AGTT-G-AAAT-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCT-----------------------AAATCT--------TACTCAAAAGCA---GAGAAATTA-AAT----CAGTACCTTCCCTGTC-AAAA--TCC----AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAG-TTGAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAATTTAA-CAATA--AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCC-----------------------AAATAT--------GATCTAAACG-A---TGCATA--T-AA-ATCCCA--ACCATCTGTGTC-CAAAGGTCTT--
gi|9 : ATCTAAACG-ACCTGGTAAA--A-AATACC-----ACCTTCCTTGTA-AAAA--TGTT--ACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111 11 222222 11111 111 3333333333333333 2222222222222222 111111 222222222 33333333333333333333333 111111111 3333333333333 3333333333333333333333333 444444444444444444444444444444444444444444444 111111111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 3 3 88 33 77777 6666 555 5 3 3 3333333333333333 0 2222222222222222 6 3 3 77 4 000000 2 222222222 777 2 0 4 4 77777777777777777777777 777777777 777 3 3 7777777777777 1 3 44 444 5555555555555555555555555 2 2 5555 33 666666666666666666666666666666666666666666666 999 3 00 2 2 222222222 33 2 2 0 2 2 2 44 666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . . .. .. ..... .... ... . . . ................ . ................ . . . .. . ...... . ......... ... . . . . ....................... ......... ... . . ............. . . .. ... ......................... . . .... .. ............................................. ... . .. . . ......... .. . . . . . . .. ... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 6 6 222 66 3 3 11 99 11111 1111 333 9 1 6 5555555555555555 5 1111111111111111 7 3 3 44 0 111111 1 999999999 000 3 7 0 0 00000000000000000000000 222222222 000 6 3 1111111111111 0 1 22 666 4444444444444444444444444 2 2 3333 77 999999999999999999999999999999999999999999999 222 1 99 0 7 111111111 99 2 9 3 7 7 9 22 555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCA-----------------------AATAT--------TATCTAAACGA---GGCA-AAA-AA--T---A--TC-CTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCA-----------------------AATAT--------TATCTAAACGA---GGCA-AAA-AA--T---A--TCACTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATAT-TTTCAGTTATATAT---TAC--C-TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATAT-GATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTCTCAA-AGTTAA-CAACACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTAGGAAAAAAATATGCCATCCGTGTCAAAGCTA---GGGG-AAA-AA------A--TGA-TACCATCCATGCC-AAAA--TCTT--TTACCTGCAA-----CTA-----AC-C-TTT-G-G-AA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : GCA-AAA-AA--T-------CA-TACCATCCGTGTC-AAAA--TCTT--TCATCTGCAA-----CTA-A-TTAC-C-TCTCG-G-AA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : CCA-AGTCG---A---TA--TGCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTCT--T-ATTTA--------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCCA-----------------------ACTGT--------TATCTAAACGA---GGCA-AAA-CCCCT---A--CC-CTACCCTCCGTATC-AAAA--TCCT--AAATCT----------------------TTT-G-G-AA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTA---CTCTAA--TGCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : CTACCTTTCCTTTC-AATA--TCTT--AAATCTGCAG-----CTA-G-T-AC-C-TTT-G-GGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTT---AATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : cTATCTT-TATCTGCTAGAC-ATTCAGTTATTTTTA--TAC--T-A-CAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATAT-GATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCCTCAT-ATTTAG-CATTATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCCA-----------------------AAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTCTTGT-ATTTAAACAATTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCCA-----------------------A-TAT--------AATATACACAA---GG---GGG-GA--T---------CTAC-TTCCCTGCT-AAAA--TCTT--AAATTTGCA------CTA-G-TTAC-T-TTT-AAG-AA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGAC-TTCCAATTGTTTAT---C-C--C-A-TGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTAT-GATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--ATCGT-ATTTAG-CAATcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATAT-TGTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGAC-TTTCAGTTGTTTAT---AAT--C-A-CGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAG-CA-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGAC-TTTCAGTTGTT-AT---TAC--C-A-TGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATAT-GATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCCTCGT-TTGTAG-CCATTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTCA-----------------------AATAT--------AATCAAAACGA---GGCA-AAA-AA--T---A--
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacag-AA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAG---C---AA--TGATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACAT-TTTCAGTTATTTAT---TAC--CTT-CGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGAC-TTTCAGTTATTTAT---TAC--A-A-TGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATAT-GATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTA-G-TTAC-C-TTA-G-G-AA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTA-T-TTAC-C-GTTAG-G-AA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----TTAGACAATG-----TC----------------------------CTCCCTTTATTGTA-AATGA---C---AA--TGTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAA---CA--AA--TGCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-A-CTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATAT-ATTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTCTCGT-ATTTAG-CGATACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCAA-----------------------AATAA--------TATCTAAACGA---GGCA-AAAGAA--T---A------TACCGTCCGTGTT-AAAA--TCTT--TAATCTGCAA-----TTATT-T-AC-CATTA-G-G-AA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC---------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGG---C---AA--TGAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : ttA-AA--T---AGATC-CTCCCTTCCGTGTC-AAAA--CCCT--AAATCTGCAA-----TTATT-T-GC-C-TTT-ATG-AT-TATGCCTAGATCGAAAAAAtc
gi|33 : -AC-T-TTC-G-G-AA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : -G-GA-TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatttaccacaaCTCTCCGTGTC-AATA--TCTT--AAATGTGCAC-----CTA-GTT-ACGC-TTA-G-G-AA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATAT-G
gi|4 : TTAGTTGTTTAT---CAT--C-A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACAT-GATAAATCTT------------------AAGTGACTGGGAT------------------GTGTAAT-----TCTCGT-ATTGAG-CAAT
gi|4 : TT--AAATCTGTAA-----TCA---------------------TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC----------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAGtatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaatctgtaatcatatgccttgattgaaagaaaatatcatcttctttaacctgtctcctttcaatatgtacacacagctttctatataatccattgggggtgatttcaaggtcacaatgtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatactatatataaaaacaggggactcatatattatcaaataaaactaaaaagaagcatttgacaaactgatttacacatatacag
gi|40 : ttagttgtttatcatcacagcacagataaaaatacacttgaatattttgtagtttgggcttgacatgtcgatattgacatgataaatcttaagtgactgggatgtgtaattctcgtattgagcaattatcaacatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCTA-AATTG---C---AA--TGCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTCCCAT-ATTTAG-CAATACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCCA-----------------------AATAG--------TATCTAAACAA---GGCA-AAA-----T---A--TC-CCACCATCCGTGTC-AAAA--TCTT--CAATC--------------G-T---------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAA---C---AA--TGCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTCTCGT-ACTTAG-CAATACCCAT-AAT-----TTTAATTCA------AATG---TTGGG-----CCAC-ATT-CACAGCCA-----------------------AATTT--------CATCTTAACGA---GGCA-AAC-AA--A---A--T---TACCATCCGTGTCAAAAA--TTTTCAAAATATGCAA-----CTA-GTT-AC-C-TTT---A-AG-TATACCCTG--------------------TTGTCATT------AAACGCT----TGA----AG------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAG---C---AT--TGTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGAC-TTTCAGTTCATTATCTCTATGAC-A-CAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGT-AATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCACTCGT-AGTT-G-AAAT-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCTA-----------------------AATCT--------TA-CTCAA--A---AGCAGAGA-AA--TTAAA--TCAGTACCTTCCCTGTC-AAAA--TCC----AACTTGCAA-----CTT-GCT-A--C-TTA-G-G-AAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAG-TTGAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATACCCCCCTCGCAATTTAA-CAATA--AAT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCCA-----------------------AATAT--------GATCTAAACGA---TGCA-TAT-AA------A--TCCCAACCATCTGTGTC-CAAAGGTCTT--
gi|9 : ATCTAAACGACCTGGTA-AAA-AA--T---A--CCAC---CTTCCTTGTA-AAAA--TGTT--ACATCTGCA-----------------C-TT------AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAG---C---A---TGCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CC
blockSeqs : GCT T A GC T A CATGTA G T T GC C AACCT G TT C G T A CTC GA T . GA AA TCATA CTTC GTC A G C AAGAAAACAAC TGATACAATATTCTCT G A A AT C AATTAT T AAATATCAA GTC G C A . T CCT G G TTAAATCAG A A GG CAA AACACATTAGTTACCTTAG G G ATAT TG TTTCCCCCCGGGCCAAGTGGATAATTATAATATAATT ATT C T C TACTCT TT A A T C T TC GAA NNNNNNNNNNNNA CATG AAAAAAAC T TT ATATTAATTACA CCGG . T C GAA C AA TC A C TTG CT G CA AATTGTAGTAAATAA GTATATAT T G GACA TC G
blockSeqs : . T . GC T A . T . . G C AACT . TG C . . G A . . . GA . . . GTC C . . AAAA . C . . TT . T A ATA . A . . . A . . . CCTACCC C . . T ACTAATTACCTCTCG . . . . TCTTTAACCTGTCTCCTTTCAAT GT . T . GGTTTT . A . . . . . GAT G . . . . . . . . . AT C A TC . C . CT G T AGAATCGA . . T GAC . A
blockSeqs : . A . CT C G . G . . G T AGTC . T C . . G . . . . TA . . . GTT T . . GA . . . . TT . A G AAA . G . . . A . . . TAGATCC T . . A ACTATTTACCGTTAG . . . . TAAAGGCTTGAACCAAGTCGAT GA . A . AACA . A . . . . . TAA T . . . . . . . . . AT A . TC . C . CT A C AA . . C GAC .
blockSeqs : . C . . . . . . . . G T TCCT . T T . . G . . . . AA . . . GAT C . . AC . . . . AC . G G AAA . G . . . T . . . TACCAC T . . A ATTATTTACCATTAG . . . . CTTTCACCTCTGCCAAATCGAT AT . T . CGA . T . . . . . TAA G . . . . . . . . . A C . TC . C . AA G T AA . . C . .
blockSeqs : . T C AACA . T T . . A . . . . CT . . . GTC C . . AA . . . . AC . T A CCG . G . . . T . . . TATCC G . . A ATTATTTGCCTTTAT . . . . TAAAGACTTGAATCAAGTCGAT AT . A . AGC . G . . . . . AAA T . . . . . . . . . A C . GC . C . CT A T AA . . . . .
blockSeqs : . A T A . A T . . A . . . . CT . . . GTA A . . AG . . . . AC . T A AAA . A . . . C . . . ATCCC T . . T CCTAGTTACGCTTAG . . . . TACTCATCTGAACCAAGTCCAT AC . G . GAC . G . . . . . NNN T . . . . . . . . . G C . TC . A . T A C TA . .
blockSeqs : . . C . T T . . G . . . . AT . . . TTC A . . AA . . . . T . A A AA . A . . . T . . . TCA C . . A CTAGTTACTTTTAA . . . . TAAACGCTTGAAGTCTAC AT . T . GGC . A . . . . . GAA G . . . . . . . . . A C . T . C . . . . A .
blockSeqs : . T A . . G . . . . CT . . . TT C . . T . . . . A . T G . . . . . . G . . . AAT A . . A GCTAGTACCTTTG . . . . TACTTGTCATGTCAAA AT . A . TGC . G . . . . . TAA C . . . . . . . . . A A . . . . .
blockSeqs : . T C . . C . . . . GA . . . A T . . A . . . . . . C A . . . . . . . . . TC A . . A ACTAGTTACCTTT . . . . CAAACGCCTGTGCCAA . . A . AAC . A . . . . . T T . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . AA . . . . C . . . . . . . . . TA T . . C ACTTGCTACTTAG . . . . CTTTAACCTGTGCCA . . A . AGC . G . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . GA . . . . A . . . . . . A . . A TTTG . . . . CTTTAGACAATGTC . . A . AGC . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . T . . . ATCA . . . . . . . . C . . . . . . . .
blockSeqs : . . . CTT . . . . . C . . . . . .
blockSeqs : GT . . . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : AA************** *********************** N******** TATCC******** ACTAGTTACCTTTAG********** GAC***
originalCons : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCA-----------------------AATAT--------TATCTAAACGA---GGCA-AAA-AA--T---A--TC-CTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTA-G-T-AC-C-TTT-G-G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
finalCons : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGAC-TTTCAGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATAT-GATAAAT-TTAA--------------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTCTCGT-ATTTAG-CAATACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCCA-----------------------AATATN--------ATCTAAACGA---GGCA-AAA-AATATCC--------TACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAACTAGTTACCTTTAG----------G-AA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNG---C---AA--TGCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCATGAC---TTT--CCCCGCGATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC
Alignments
lowQualScore : 111 11 222222 11111 111 2222222222222222 2222222222222222 222222222 33333333333333333333333 111111 2222222222222 111111 555555555555555555555555555555555555555555555 111 2222222222222 11111111 111111111111 333333333333333333333 11111111 222222
lowQualScore : 444 1 8 00 1 1 333333 0 5 8 5 66 1 33333 4 444 1 0 3 0 3 1 999 44 3 3 88 33 77777 6666 555 5 3 3 6666666666666666 2 2222222222222222 3 3 3 3 3 44 0 3 99999 2 111111111 666 22 0 3 3 33333333333333333333333 666 000000 666 6 3 3333333333333 1 2 33 555 000000 3 1 33 3 2 5555 33 777777777777777777777777777777777777777777777 77 3 2 2 22 222 33 2 2 0 2 2 2 44 666 0 0000000000000 7777 22222222 3 44 777777777777 7777 3 3 3 6666 6 77 33 4 1 0 777 33 1 66 333333333333333333333 88888888 0 0 5 5 444444 99 3
lowQualScore : ... . . .. . . ...... . . . . .. . ..... . ... . . . . . . ... .. . . .. .. ..... .... ... . . . ................ . ................ . . . . . .. . . ..... . ......... ... .. . . . ....................... ... ...... ... . . ............. . . .. ... ...... . . .. . . .... .. ............................................. .. . . . .. ... .. . . . . . . .. ... . ............. .... ........ . .. ............ .... . . . .... . .. .. . . . ... .. . .. ..................... ........ . . . . ...... .. .
lowQualScore : 000 0 0 22 4 4 000000 8 0 0 7 44 1 44444 0 222 8 8 1 4 3 6 222 66 3 3 11 99 11111 1111 333 9 1 6 8888888888888888 4 1111111111111111 3 3 3 3 3 22 5 6 11111 0 111111111 444 33 7 6 6 66666666666666666666666 000 555555 444 7 1 8888888888888 0 9 99 444 777777 5 6 44 3 2 3333 77 777777777777777777777777777777777777777777777 66 1 0 7 77 999 99 2 9 3 7 7 9 22 555 6 2222222222222 1111 11111111 3 66 111111111111 1111 6 6 6 8888 7 99 22 0 1 8 888 00 1 11 222222222222222222222 11111111 4 1 7 2 000000 22 7
consensus : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGACTTTC-AGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATATG-ATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTC-TCGTA-TTTAG-CAA-TACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCC-----------------------AAATATN--ATCT------AAACGA---GGCA-AAA-AA--T---A--TC-CTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTAGTTA--CCTTTAGGAA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNGC---AAT--GCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
Reference ( family-583 ) : ATCA---TATTCAAATTAAAGTAAANTTCTT-CCAANCGCCGCATA------TTTTACTAAAAATCGTTT-GTCAATGTATAAACAAACATCGTGCC-ACGTGGGG-AAATCCCTCGCTTAACC-GTTACGTCA-TCA-T-ACAAGTGACGTAGAGCTATTTT-TATCCGCTAGACTTTC-AGTTGTTTAT---TAC--C-A-CGGTTCAAGCGATTAA--TGCACTCAAATCATTTGCAGTTTGGGCT-----TG----ATGTGTCGATATCGATATG-ATAAAT-TT-----AA---------AAAAGTGACCCGGAT----------------CGGTACAATA-TCCTC-TCGTA-TTTAG-CAA-TACCCAT-AAT-----TTCGATTCA------AATG---TTGGGCATTTCCAC-ATT-CACTGCC-----------------------AAATATN--ATCT------AAACGA---GGCA-AAA-AA--T---A--TC-CTACCNTCCGTGTC-AAAA--TCTT--AAATCTGCAA-----CTAGTTA--CCTTTAGGAA-TATGCCTTGATCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCNAT------TCNA-------TATGTA-TAC-ACGATTGGCTTTCTATATTCTA-AATNGC---AAT--GCGCAT-TGGGGGCGA-TTTCAA-GGTCACAATGTAA-TGATT--AANAATATTGTAATT------------CACACTA----TA--------TATAAAA-A--CAGGAGAC------------TTA----TATATTATCAA-AGAAA-A-TT--A-ACAA--GAATCATT-TGACAAACAGATTTAC---ACATATACAGCTTGGAC-GCTTGATA------A-------------TTGTA--------GTAAATAACGATA-AAATATCAT--GAC-TTT--CCCCGCGATAC
gi|1 : ATTA---TAATCAAATTAAAGTAAAATTATT-CCAACTGCCGCTTA------TTTTACTAAAAATTGTTT-GTCAATTTATTAACAGACATCGTGCC-ACGTGGGG-AAATTCCTTGCTTAAAT-GTTACGACA-TCA-A-ATCAGTGACGTAGAGTTATTTT-TATCCGCTATATTTTC-AGTTATATAT---TAC--C-TTCGGTTCAAGCTTCTAA--TGCACTAAAATCATTTGCAGTTTCGGCT-----TG----ATGTGGTAATATAGATATG-ATGAAT-TTTAAAAAA---------AAAAATGACCCAGAT----------------CGGTGTAATA-TCCTC-TCAAA-GTTAA-CAA-CACCCAA-ACT-----TTCAATTCT------TATG---TTGGGCATTTCCGC-ATT-CACTGCCAAATAATATTTAAACTAGGAAAAAAATATGCCATCCGTGTCAAAGCTA---GGGG-AAA-AA------A--TG-ATACCATCCATGCC-AAAA--TCTT--TTACCTGCAA-----CTA---A--CCTTT-GGAA-TATACCTTGGACGAAAGAAAA----CA--TTGTCATT------AAAGGCG----TGAACCCAT------TCTA-------CATTTA-TAT-CCGCTTGAGTCTCTATTTTCTA-AATTGC---AAT--GCGCAT-TGGGGGCGA-TTTCAA-TGTCACAGTGTAA-TGATT--AAGAATATTGAAATT------------CACACTA----TA--------TATAGGA-A--CAGGATAC------------TTA----TGTATTATCAATGGAAT-A-TT--A-TCAA--AAATAATT-TCAAAAACTGATTTAT---ACGTATGCAGCATTAAT-ACTTGATA------A-------------TTGTA--------GCAAATGAAGATA-AAATATCATTATAC-TTT--TCCCTTGGTAC
gi|10 : GCA-AAA-AA--T-------C-ATACCATCCGTGTC-AAAA--TCTT--TCATCTGCAA-----CTAATTA--CCTCTCGGAA-TATGCCTTGGTCGAAAGAAAA----TA--TCGTCATT------AAAGGCT----TGAACCAAG------TCGA-------TATG-----C-AC-ATTGG
gi|10 : CCA-AGTCGA---TAT--GCACAT-TGGGGGCGA-TTTCAA-ATTCACAGTGTAA-TGAT------------------------------CACACTA----TA--------TATTGAA-A--CAGGAGAC------------TTG----TATATTATCAA-AGAAATC-TT--A-ACAAA-GAATCGTT-TGACAAACAGATTTAC---ACACATGCAGCTTGGAT-ACTTGATA------ATTGTAGTAAATAATTGTA--------GTAAATAACGgggcgatttcaaattcacagtgtaatgatcacactatatattgaaacaggagacttgtatattatcaaagaaatcttaacaaagaatcgtttgacaaacagatttacacacatgcagcttggatacttgataattgtagtaaataattgtagtaaataacg
gi|11 : gcaaaaaatcataccatccgtgtcaaaatctttcatctgcaactaattacctctcggaatatgccttggtcgaaagaaaatatcgtcattaaaggcttgaaAAAGTAATCCGGAC----------------CTGTAAAATAGTCTTC-T--TA-TTTA---------------AT-----TTCTAATC---------TG---TTGGGCATTTCCCCCATT-CCCTGCC-----------------------AACTGTT--ATCT------AAACGA---GGCA-AAA-CCCCT---A--CC-CTACCCTCCGTATC-AAAA--TCCT--AAATCT--------------------TTT-GGAA-TAAGCCTGGATCGAAATAAAA----TA--TCGTGATTTTCCCCCCGGGCCAAG-TGGA-TAAT------TATAATATAATTATATG-TAC-ACGACTGAATGTCTTTATTCTA-AATTACTCTAAT--GCATAT-TAGGGACGA-TTTCAA-GATAACGA
gi|12 : C-CTACCTTTCCTTTC-AATA--TCTT--AAATCTGCAG-----CTAGT-A--CCTTTGGGAA-TATGTCTTGATTGAAACAAAA----TA--TCATCAT------------CT----TTCACCTCTGCCAAATCGA-------TATGTG-AAC-ACAAACAGCTTTCTTTATTCCA-AATGGTTTTAATTTGCACAC-TGGGACTGA-TTTCTA-GGTCACTAT-----------------TATTGTAATG------------CAAACTA----T---------TATAAAATC--CAAGACAC------------TTG----TTTTTTATTA
gi|13 : TATCTT-TATCTGCTAGACATTC-AGTTATTTTTA--TAC--T-A-CAGTTCAGGTGATTAA--TGCACTCAAATCATTTGCAGTTTGGATT-----TA----TTGTGTCGATACAGATATG-ATAAA--TT-----GA---------AATAGTTACTGGGAT----------------CGGTATAATA-CCCCC-TCATA-TTTAG-CAT-TATCAAT-AAT-----ATAAGTTCAAATATCAATG---TTCGACA-TTCCAC-ATT-TACTGCC-----------------------AAAgctcacctgagccgaagg
gi|14 : aatATCA---CATTCAAATTGAAGAATATTTTTTACCAAGCGTCACATA------TTTTACTAATTATCGTTT-GTCAATGCATAAACAAACGTCGTACC-ACGTTGGG-AAACCAATCGCTTAACT-ACTACGTCA-TCATT-GTAA-TGACATAAAGCTATTTT-TATccaaatgtaatattt
gi|15 : cacagtggggtaagttatccagagtaataactattaataatAATA-CCCTC-TTGTA-TTTAAACAA-TTTCCAT-AAT-----GCCGATTCA------A-TA---TTGG-CATTTTTAC-ATT-CACTGCC-----------------------AA-TATA--ATAT------ACACAA---GG---GGG-GA--T---------CTAC-TTCCCTGCT-AAAA--TCTT--AAATTTGCA------CTAGTTA--CTTTTAAGAA-TATGCCTTGATCGAAAGAAAAATATTA--TCGTCAT
gi|16 : -TCA-T-AAAAGTGA-GAAGAGCTGTATT-TGTCCGATAGACTTCC-AATTGTTTAT---C-C--C-A-TGGCACAGCTGATTAA--TGCAATCAAATCATTTGAAGTTTGGCC--------------GT---GATATCTGTATG-ATCAAT-TGAA---AA---------AAAAATGACTGTGAT----------------TTGTACAATA-TC--A-TCGTA-TTTAG-CAA-Tcgtttcgcctgtacca
gi|17 : GTGGGG-AAATTCCTCGCTTAGTC-ATTAttacat
gi|17 : tcctatctatatttttacgaA--TGCACTCAAACAATTTATGGTTTGGGCTTCATATGCTTCATATGTCGATATTGATATT-GTGAAT-TT------T---------AAAAGTGATCCAAAC----------------AGGTACAATattttacgtacgaatgaaggatgcactcaaacaatttatggtttgggcttcatatgcttcatatgtcgatattgatattgtgaattttaaaagtgatccaaacaggtacaat
gi|18 : tcctatctatatttttacgagtggggaaattcctcgcttagtcattaattttacgtacgaatgaaggGGG-AAATCCCTTGCTTA-----------CA--CA-TGACTGGTAACATAGA--TATTTTGTATCCGCTAGACTTTC-AGTTGTTTAT---AAT--C-A-CGGTACAGGCTATTAA--TGCATTCACATCATGTGTAGTTTG---------TG----ACACA--AATATCAATAGC-A-AAAT-TT-----AC---------AAACGTAA
gi|19 : ATCAA-GGAAA-A-------ACGA--AGATCATT-TGACAAACAGATT-------CATATGCG--TTGGAC-GCTTGAT-------A-------------TTGTA--------GTTAA-AACGTTG-AAATAT-AT--GAC-GTT--t
gi|2 : attgaccacatgcgctattattagaaacctccgggactaactagCA---TATTCAAATCAAAGTAAATTTCTT-TCAAGCGTCACATACATGTATTTTACAAAAAATCTTTTTGTCAATATATAAACAAACATCATACC-ACGTGGGT-AAATCCCATGCTTTCCT-ATTACATAT-TCG-T-ACAAGTGAGGTAGAACTGTTTT-TATCCGCTAGACTTTC-AGTTGTT-AT---TAC--C-A-TGGAT-AAGCAATTAT--TGCATTCAAATCATTTGCAGTTTGGGCC-----TA----ATGT------ATCGATATG-ATAAAT-TT-----AA---------AA--GTGATCCGGAT----------------CGGTATAATA-TCCCC-TCGTT-TGTAG-CCA-TTTCTAT-AAT-----TTTGATTTA------TATG---TTGGGCATTTTCAC-ATT-CACTGTC-----------------------AAATATA--ATCA------AAACGA---GGCA-AAA-AA--T---A--
gi|2 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagAA-TACGTCTTGATTGAAAGAAAA----TA--TAGTCAT------------CT----TTAACCTGT------GCCA--------A-GT-------TGATTGGCTT-----ATTCTA-AATAGC---AAT--GATCAC-TGGGAATGA-TTTCAA-GGTCACAGTGTAG-TGATT--AAGAATATGGTAATT------------CAAACTACATGTA--------TATATAA-ATTCAGGAGAC------------TTA----CATGTCATTAA-AGAAA-A-TT--A-A-----------TT-TAA--AATAGAATTATTTGACACATACGGCTTGAAT-GTTTGATA------A-------------TTGTAGTATATATGTAAATAACGTTA-AAATATGAT--GAC-TTTTCCCTCGCGATACcgtcttgattgaaagaaaatatagtcatctttaacctgtgccaagttgattggcttattctaaatagcaatgatcactgggaatgatttcaaggtcacagtgtagtgattaagaatatggtaattcaaactacatgtatatataaattcaggagacttacatgtcattaaagaaaattaatttaaaatagaattatttgacacatacggcttgaatgtttgataattgtagtatatatgtaaataacgttaaaatatgatgacttttccctcgcgatacaatgtatag
gi|20 : tcacagtggtgatataaaggtgtaatgagtgaaattagaaataattacagcatattcaaatcaaagtaaatttctttcaagcgtcacatacatgtattttacaaaaaatctttttgtcaatatataaacaaacatcataccacgtgggtaaatcccatgctttcctattacatattcgtacaagtgaggtagaactgtttttatccgctagactttcagttgttattaccatggataagcaattattgcattcaaatcatttgcagtttgggcctaatgtatcgatatgataaatttaaaagtgatccggatcggtataatatcccctcgtttgtagccatttctataattttgatttatatgttgggcattttcacattcactgtcaaatataatcaaaacgaggcaaaaATCAGCTTATTCAAATTGAAGTAAAAGTCTT-CCAA-------ATC------TTTT--CAAGAATT-TTT-GTCAATGTATAAACAAAGACCACGCT-ACGTaatgtatag
gi|21 : acagtggggtgaagaaaatgttccaagtgaaattaaccagtaat-GTTACGACA-TCA-T-ATCAGTGACGTAGAGTTATTTT-TATCTGCTACATTTTC-AGTTATTTAT---TAC--CTT-CGGTTCAAGCCTTTAA--TGCACTAAAATCATTTGCAGTTTGGGCT-----TG----ATGT
gi|22 : GACGTAGAGTTATTTT-TATCCACTAGACTTTC-AGTTATTTAT---TAC--A-A-TGATTGAAGCCTTTAA--TGCACTCACATCATTTGCAGTTTGGGCT-----TG----ATGTGTTGATATAGATATG-ATAA
gi|23 : GGGGTGA-TTTCAA-GGTCACAATGTAA---ATTTCAAGATTATTGTAATG------------CGCAATA----CAAAAAAAACCAAAAAA-A--CAGGAGAC--------------A----TATATTATTAA-AGAAA-A-CTGAA-AAAA--GAATCATT-TG
gi|24 : AGGAGAC------------ATACCGGTATATTATCAA-AGAAA-ACTT--G-ACAAAAGAATCATTATG-CAAACAAATTT-C---TGATACACAACTTGGAT-ACTTGATA------A-------------TTGTA--------GT-AATTACGATA-A
gi|25 : agagaaACCTGCAAACACATTAGTTA--CCTT-AGGAA--ATTCCTTAATCGAAAGAAAA----TATGTCGTCGAT------A----CT----TG---TCATG-----TCAA-------AATGCATTAC-ACTGCTGGTTTTCTATATTCTA-At
gi|26 : CAA-----CTATTTA--CCGTTAGGAA-TATGTCTCGATCAGAAGCAAA----TA--TCTTCAT------------CT----T--------------------------------TAG-ACAATGTCCTCCCTTTATTGTA-AATGAC---AAT--GTGCAT-TGGGAGTGA-TTTC
gi|27 : CAA-GGTCACAATGTAA-TGATT--AATAATATTGTAATT------------CACACTA----TA--------TATATAA-A--CAAGAAAT------------TTA----TATATTATCAA-AGAAA-A-TT--ATACAA--AA
gi|28 : AA-GGTCACAATGTAA-TGATT--AATAATATTGCAATT------------CACACTA----TA--------TATAAAA-A--CAAGAAAT------------TTA----TACATTATCGA-AGAAA-A-TT--ATACAA--AAcaagatgcgt
gi|29 : A-------TATGTA-TACCACGATTGGAATTCTATTTTCTA-AATAACA--AAT--GCGAATATGGGAACAATTTTCAA-GGGTAAAATTCAA-Tcaagatgcg
gi|3 : aagtcCA---TATTCAAATTAATGTAAACTTCTT-CCAACTGCTGCATA------TTTTACTAAAAACCGCTT-GTCAGTGTATAAACAACCATCGTGCC-ACATGGGA-AATTCCTTC---CAACCTGTTATATCA-TCA-A-ACAAGTGACGTAGAGTTATTTT-T-TGCGATAAACTTTTTAGTTGTTTAT---TAC--C-A-CTGTTCAAGTATTCAA--TGCACTCAAATAATTTGCAATTTGAGCT-----TC----ATGTGATGATATAGATATA-TTAAAT-TG-----AAGAAAACAACAAAAATTACCCGGAT----------------CGGTACTATA-TTCTC-TCGTA-TTTAG-CGA-TACCCAT-CAA-----TTCAATTC-----------------------TCCGC-ATT-CACTGCA-----------------------AAATAAT--ATCT------AAACGA---GGCA-AAAGAA--T---A--T----ACCGTCCGTGTT-AAAA--TCTT--TAATCTGCAA-----TTATTTA--CCATTAGGAA-CATGCCTTAGTCGAATGAAAA----TA--TCGTCATT------AAAGACT----TGAATCAAG------TCGA-------TATGTA-TAC-ACGATTGGCTTTCTGTATTTTA-AATC------------------GGGCGCGA-TTTCAA-GGTCACAGTGTGA-TAATT--AAAAATATTGAAATG------------AGCGCTA----TA--------TTTAGAA-A--CATGAGAC------------TTA----T
gi|30 : acagtggggttaaggtgtccgagtgaaaacagcaagtattaacag--A-ACGA--GACT-ATT-TGACAAACAGATTTAC---ACATACACAG---------------A------A-------------TTGCA--------TTAAATAAATATA-AAATATTAT--GACATTT--
gi|31 : gggaaTTTCTTTGTTCGACAATGGC---AAT--GAACAT-TGGGGGCAA-TTTCAACGGTCACAATGTAATTTATT--AAT--TATTGT
gi|32 : ttA-AA--T---AGATC-CTCCCTTCCGTGTC-AAAA--CCCT--AAATCTGCAA-----TTATTTG--CCTTTATGAT-TATGCCTAGATCGAAAAAAtc
gi|33 : CTTTCGGAA-TATGCCTTAGTCGA---AAAA----TA--TCGTCATT------AATGGTT----
gi|34 : taaaaACAAACATCGTACC-ACGTTGG--AAATC------TTAACA-ATTACGTCA-TCA-T-ACAAACGACATTGAGTT-TTCT-Tccctatgtaagccaacctagtcga
gi|35 : TATTTT-TATCCGCTAAA-------------TAT---TAC--C-A-CGGTTAAAGCCTTTAA--TGCACTCAAATCATTTGCAG
gi|36 : TTA--CCACAAGGA--TATGTCTTGATCGAAAGAGAA----TA--TTGTCATT------
gi|37 : ttcattggcagcgaatCTCTCCGTGTC-AATA--TCTT--AAATGTGCAC-----CTAGTTA--CGCTTAGGAA-TATGCC
gi|39 : TCATTTGCAGTTTGGTCT-----TG----ATGT-TTGATATCGATATG-
gi|4 : TT-AGTTGTTTAT---CAT--C-A-CAGCACA---GATAAAAATACACTTGAATATTTTGTAGTTTGGGCT-----TG----ACATGTCGATATTGACATG-ATAAATCTT-----AA-------------GTGACTGGGAT------------------GTGTAAT-----TC-TCGTA-TTGAG-CAATTATCAAC-ATC-----TNNNNNNNN------NNNN---NNNNNNNNNNNNNN-NNN-NNNNNNN-----------------------NNNNNNN--NNNN------NNNNNN---NNNN-NNN-NN--N---N--NN-NNNNNNNNNNNNNN-NNNN--NNNN--NNNNNNNNNN-----NNNNTTAAATCTGTAATCA-TATGCCTTGATTGAAAGAAAA----TA--TCATC-TT-----------CT----TTAACCTGTCTCCTTTCAA-------TATGTA-CAC-ACA----GCTTTCTATAT-----AATC-------------CAT-TGGGGGTGA-TTTCAA-GGTCACAATGTAA-NNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNACATACTA----TA--------TATAAAA-A--CAGGGGAC------------TCA----TATATTATCAA-ATAAA-A-CT--A-AAAA--GAAGCATT-TGACAAACTGATTTAC---ACATATACAG
gi|40 : TCTA-AATTGC---AAT--GCGCAT-TGGGGGCGA-
gi|5 : AAAGTGACCCAGAT----------------CGGTGCAATA-TCCTC-CCATA-TTTAG-CAA-TACTCAT-CAT-----ATCAATTCA------AAT----TTGGGCATTGCCAC-ATT-CACGGCC-----------------------AAATAGT--ATCT------AAACAA---GGCA-AAA-----T---A--TC-CCACCATCCGTGTC-AAAA--TCTT--CAATC-------------GT-------------------CCTTGGTTGAAAGGAAA----TA--TCGTCATT------A----CTCATCTGAACCAAG------TCCA-------TATGTA-TGC-ACGGTTGGCTTTCTATATTTTA-AATAAC---AAT--GCACAT-TGAGAGCGA-TTTCGA-GGTCACAATGTAA-TGATT--AGGAATATTGTAATC------------TACACTA----TG--------TATAACC-A--CAGGAGACATATTAATTACATTG----TGTATTAT-------GA-A-TC--G-A-AA--GAA--ATT-TGGAAAACAGATTTAC---ACATACACAGAATGAACAGGTTAATAGAATCGA-------------CTGTA--------GTAAATAACGAGA-AAACCTCAT------TTT--CCCCACGATAC
gi|6 : CAAGCAAATAA--TGCACTCAAATAACTTGCAGTTTGGGTT-----TG----ATATGTAGATAC----------------------AG---------AAAAGAGACCCGGATTGATACAATATTCTCTCGGTACAATA-TTCTC-TCGTA-CTTAG-CAA-TACCCAT-AAT-----TTTAATTCA------AATG---TTGGG-----CCAC-ATT-CACAGCC-----------------------AAATTTC--ATCT------TAACGA---GGCA-AAC-AA--A---A--T---TACCATCCGTGTCAAAAA--TTTTCAAAATATGCAA-----CTAGTTA--CCTTTAAG---TATACCCTG--------------------TTGTCATT------AAACGCT----TGA----AG------TCTA-------CATGTA-TAC-ACGATTGGCTTTTTAATTTCTA-AAAAGC---ATT--GTGCAT-TGGGGACGA-TTTCAA-GGCCACAATGTAA-TGATT--AATAATATTGTAATT------------TACACTA----TC--------T-TAAAA-A--CA-GAGAattgcgta
gi|7 : CATCA-TCA-T-ACAAGTGACTTAGAGATATTTC-TATTCGCTAGACTTTC-AGTTCATTATCTCTATGAC-A-CAGTTAAA------AA--TGTATTCTAATTATTTACAGTTTGGGTT-----T------------GATATCAATGTA-ATAAAT-CT------A---------TAAACTGACCGTGAC----------------CGGTACAATA-TTCAC-TCGTA-GTT-G-AAA-T-TCCATCGAT-----CTTGATTTC------CGTGGTCTCAGAGATTGCCAC-ATT-AACTGCT-----------------------AAATCTT--A-CT------CAA--A---AGCAGAGA-AA--TTAAA--TCAGTACCTTCCCTGTC-AAAA--TCC----AACTTGCAA-----CTTGCTA--C--TTAGGAAGTATGTATTAATCGAAAGAAGA----tcca
gi|8 : TTGTGCTTACGTGGGGCAGATCCCTTGTTT---C-GT-ATATCAGTCA-T-TCAAGTGACGTAGAGCT-TGTT-T---CGCC---------------TTAT---CAC--C-A-CAGCACTGGTGAGGAG--TGCACTCAAATTATTTGCAGTT-GAGCT-----TG----ATGTTTCGATATAGATTTGGACAACT-TT-----AA---------AA--------TGTAT----------------CG---CAATA-CCCCCCTCGCAATTTAA-CAA-TAA--AT-AATAATTATTCAATGCA------AATG---TTGGACTTTTCCAC-ATTATACTCCC-----------------------AAATATG--ATCT------AAACGA---TGCATATA-AA--T------CC-CAACCATCTGTGTC-CAAAGGTCTT--
gi|9 : --ATCT------AAACGACCTGGTA-AAA-AA--T---A--CC---ACCTTCCTTGTA-AAAA--TGTT--ACATCTGCA----------------CTT----AA-C---CCTTCATCGAAAGAAAA----TA--TCGTTATC------AAACGCC----TGTGCCAA---------------------GT-------CGATTGGTTTTCTACGTTCTT---TAGC---A-T--GCAAAT-TGGG----A-TTTCAT-GGTCACAATGTAA-TAA--------------------------------ACACAA----TA--------TATAAAA-A--CAGGAGA--------------TA----TATTTTATCAA-AGAAA-A-CC--A-A--A--GAATCATT-TGACAAACAGATTTGC---AGGTATACAGCTTGAAC-GCTTGATT------A-------------GTTTA--------GTA---AACGATCTAAATGGCAT------TTT--CC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): CCAGGAACGCTTGTTTTTAGCTCACCTGAGCCGAAGGC