lowQualScore                  :                                                                  111                  11                                                                                                                                            
lowQualScore                  :                             6     8    8        3  9     7       000      44  3 55    00    3   3  3        6666    3 3    2   5  2   2  333  77777  2   2  2         7777        3  55             5       888  77    6    6       
lowQualScore                  :                             .     .    .        .  .     .       ...      ..  . ..    ..    .   .  .        ....    . .    .   .  .   .  ...  .....  .   .  .         ....        .  ..             .       ...  ..    .    .       
lowQualScore                  :                             0     2    0        6  9     3       000      22  6 00    88    2   1  1        5555    1 1    9   7  9   9  444  11111  9   9  9         1111        3  00             7       000  99    7    7       
consensus                     :                     ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-NAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
Reference ( gi|1 )            :                     ACGTTTCAAATAAATAACT-GTAATTTG-AATTTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|6                          :                     ACGTTTCAGATAAACAACT-GTAATAGC-AATTT-GT-GTATTCA---CCTGAA--AT-G--GATGAAAAAAATTC-AG-AAAGCGCT----TGTGAA-AATG-AAT-AT-ATT-TT-G-AA-----ACTTGCAAA-ATTTACCTG----CTTTTTAT-AT--ATT
gi|8                          :                           CAGATACAGAACT-GTA--TTG-AAATTTGT-GTATTGAGAGCCTGAA-GATTG--GGTG-AAGAA--TC-AGCAAGGCG-T----TGTG-A-AATG-AATGAT-ATT-TT-G--A-----AC-TGC-AAGATTTACTTG----CTTTTTAT-
gi|5                          :                          aaataTAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-G-----------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-
gi|4                          : taatagaaagcatctcatatcaattatgtcgAAACAACTTGTAATT-G-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATGAAATAAT-ATT-TT-GAAA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTA-TTTGACTG-TGTGAGAATTCT--ACTT-ATTC-TTTTGGAtatatatatatatatat
gi|13                         :                                    agaT-GTAATTTG-AAATTTGTTGTATTCA---CCTGAG-------------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-t
gi|3                          :                                           AATTTG-AAATTTGT-GTATTCA---C--GAA-GAT-G--GATG-AAAAA-TCCGAG-AAAGCTCT----TGTG-A-A-TG-AAT-AT-ATT-T----AA-----AC-TGC-AA--TTTACCTA----GCTTTTAT-CT--ATTATTTTGACTGCTGTGAGA---CA--ACTTAATTC-TTTTGGA
gi|7                          :                                       attgAATTTGGAAATTTGTAGTAATCAA--CCTGAAAGAG-G--AATG-TAAAAATCC-AG-AAAGCGGC----TGTA-A-AATG-AAT-ATCATT-TT-G-AAACTGGAC-TGC-AA-ATTTACCTA----CTTTTTAT-CT--ATtataaatatataaattatat
gi|2                          :                                      aacacgtaTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTCTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTCTTTTTGGA
gi|11                         :                                            aaTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATT-AAT-AT-ATT-TT-T-AA-----AC-TGC-AA-ATGTACCTG----CTTTTTAT-CT--ttatatacttaaagattata
gi|12                         :                                              TTA-AATTT----GTATTCA---CATGAG-AAT-G--GATG-TTAAAATCC-AG-AAATCGCT----AGTG-A-TTTG--AT-AT-TCT-TG-G-AA-----AC-TGC-AT-ATTT-CC------CTTTTTA
gi|15                         :                                               ta-AATTTTGT---ATTCA---TTTGAG-GAT-ATAGATG-TCAAAATCC-AG-AAAGCACT----Tatt
gi|9                          :                                                                                       ttaaAAATCC--G-AAAGCGCTAGGTTATG-GCAATG-AAT-A--ATCGTT-A-CA-----AC-TAC-AT-ATTTTTTTA-----TTTTTAT-TTTTATTATTTCGACTG-TGTGATA--CAA--ACGC-TTTC-TTTT
gi|16                         :                                                                                              TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT---------------------A-ATTTACCTA----ATTTATAT-AT--AT
gi|10                         :                                                                                                                   TG-A-AATG-AAT-AT-ATT-TTTG-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TT
gi|14                         :                                                                                                                         ATG-AAT-AT-ATT-TC-A-AA-----AC-TGC-AA-AATTACCTGGGGTTTTTTTGTGTT--ATTATTTTGAC---TGCGATA--TCA--ggattatatatatataatatata
gi|17                         :                                                                                                                                                                                TAT-CT--ATTATTTTGACTG-TGTGAGA--TCAAGACTT-TTTG-CTTTGGA





Alignments
lowQualScore                  :                                                                                                  11                                                                                                                                            
lowQualScore                  :                                          0        6        3        6       999      3   3 44    33        2  2        6666    2 2    2   5  2   2  2 2  66666  2   2  2         6666        3  44             5       66   66    5    5       
lowQualScore                  :                                          .        .        .        .       ...      .   . ..    ..        .  .        ....    . .    .   .  .   .  . .  .....  .   .  .         ....        .  ..             .       ..   ..    .    .       
lowQualScore                  :                                          8        7        3        7       222      3   3 66    22        9  9        1111    9 9    7   3  7   7  7 7  77777  7   7  7         5555        1  66             0       99   99    7    7       
consensus                     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
Reference ( family-5785 )     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-NAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|1                          :                                ACGTTTCAAATAAATAACT-GTAATTTG-AATTTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|10                         :                                                                                                                              TG-A-AATG-AAT-AT-ATT-TTTG-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TT
gi|11                         :                                                         TTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATT-AAT-AT-ATT-TT-T-AA-----AC-TGC-AA-ATGTACCTG----CTTTTTAT-CT--ggattatatatatataatatata
gi|12                         :                                                            -AAATTTGT---ATTCA---CATGAG-AAT-G--GATG-TTAAAATCC-AG-AAATCGCT----AGTG-A-TTTG--AT-AT-TCT-TG-G-AA-----AC-TGC-AT-ATTT-CC------CTTTTTA
gi|13                         :                                              tattT-GTAATTTG-AAATTTGTTGTATTCA---CCTGAG-------------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-att
gi|14                         :                                                                                                                                    ATG-AAT-AT-ATT-TC-A-AA-----AC-TGC-AA-AATTACCTGGGGTTTTTTTGTGTT--ATTATTTTGAC---TGCGATA--TCA--
gi|15                         :                                                         TTA-AAATTT-T-GTATTCA---TTTGAG-GAT-ATAGATG-TCAAAATCC-AG-AAAGCACT----T
gi|16                         :                                                                                                         TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT---------------------A-ATTTACCTA----ATTTATAT-AT--AT
gi|17                         :                                                                                                                                                                                           TAT-CT--ATTATTTTGACTG-TGTGAGA--TCAAGACTT-TTTG-CTTTGGA
gi|2                          :                                                         TTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTCTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTCTTTTTGGA
gi|3                          :                                                    aaAATTTG-AAATTTGT-GTATTCA---C--GAA-GAT-G--GATG--AAAAATCCGAG-AAAGCTCT----TGTG-A-A-TG-AAT-AT-ATT-T----AA-----AC-TGC-AA--TTTACCTA----GCTTTTAT-CT--ATTATTTTGACTGCTGTGAGA---CA--ACTTAATTC-TTTTGGAttatatacttaaagattata
gi|4                          :                                   attgAGA-AAACAACTTGTAATT-G-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATGAAATAAT-ATT-TT-GAAA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTA-TTTGACTG-TGTGAGAATTCT--ACTT-ATTC-TTTTGGAtataaatatataaattatat
gi|5                          :                                          TAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-G-----------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-t
gi|6                          : taatagaaagcatctcatatcaattatgtcgACGTTTCAGATAAACAACT-GTAATA-G-CAATTTGT-GTATTCA---CCTGAA--AT-G--GATGAAAAAAATTC-AG-AAAGCGCT----TGTGAA-AATG-AAT-AT-ATT-TT-G-AA-----ACTTGCAAA-ATTTACCTG----CTTTTTAT-AT--ATTtatatatatatatatat
gi|7                          :                                                      AATTTGGAAATTTGTAGTAATCAA--CCTGAAAGAG-G--AATG-TAAAAATCC-AG-AAAGCGGC----TGTA-A-AATG-AAT-ATCATT-TT-G-AAACTGGAC-TGC-AA-ATTTACCTA----CTTTTTAT-CT--AT
gi|8                          :                              aacacgtaCAGATACAGAACT-GTA--TTG-AAATTTGT-GTATTGAGAGCCTGAA-GATTG--GGTG--AAGAATC--AGCAAGGCG-T----TGTG-A-AATG-AATGAT-ATT-TT-G--A-----AC-TGC-AAGATTTACTTG----CTTTTTAT-
gi|9                          :                                                                                                 aaataAAATCC--G-AAAGCGCTAGGTTATG-GCAATG-AAT-A--ATCGTT-A-CA-----AC-TAC-AT-ATTTTTTTA-----TTTTTAT-TTTTATTATTTCGACTG-TGTGATA--CAA--ACGC-TTTC-TTTT





Alignments
lowQualScore                  :                                                                                                  11                                                                                                                                            
lowQualScore                  :                                          0        6        3        6       999      3   3 44    33        2  2        6666    2 2    2   5  2   2  2 2  66666  2   2  2         6666        3  44             5       66   66    5    5       
lowQualScore                  :                                          .        .        .        .       ...      .   . ..    ..        .  .        ....    . .    .   .  .   .  . .  .....  .   .  .         ....        .  ..             .       ..   ..    .    .       
lowQualScore                  :                                          8        7        3        7       222      3   3 66    00        9  9        1111    9 9    7   3  7   7  7 7  77777  7   7  7         5555        1  66             0       99   99    7    7       
consensus                     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
Reference ( family-5785 )     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|1                          :                                ACGTTTCAAATAAATAACT-GTAATTTG-AATTTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|10                         :                                                                                                                              TG-A-AATG-AAT-AT-ATT-TTTG-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TT
gi|11                         :                                                         TTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATT-AAT-AT-ATT-TT-T-AA-----AC-TGC-AA-ATGTACCTG----CTTTTTAT-CT--ggattatatatatataatatata
gi|12                         :                                                            -AAATTTGT---ATTCA---CATGAG-AAT-G--GATG-TTAAAATCC-AG-AAATCGCT----AGTG-A-TTTG--AT-AT-TCT-TG-G-AA-----AC-TGC-AT-ATTT-CC------CTTTTTA
gi|13                         :                                              tattT-GTAATTTG-AAATTTGTTGTATTCA---CCTGAG-------------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-att
gi|14                         :                                                                                                                                    ATG-AAT-AT-ATT-TC-A-AA-----AC-TGC-AA-AATTACCTGGGGTTTTTTTGTGTT--ATTATTTTGAC---TGCGATA--TCA--
gi|15                         :                                                         TTA-AAATTT-T-GTATTCA---TTTGAG-GAT-ATAGATG-TCAAAATCC-AG-AAAGCACT----T
gi|16                         :                                                                                                         TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT---------------------A-ATTTACCTA----ATTTATAT-AT--AT
gi|17                         :                                                                                                                                                                                           TAT-CT--ATTATTTTGACTG-TGTGAGA--TCAAGACTT-TTTG-CTTTGGA
gi|2                          :                                                         TTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTCTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTCTTTTTGGA
gi|3                          :                                                    aaAATTTG-AAATTTGT-GTATTCA---C--GAA-GAT-G--GATG--AAAAATCCGAG-AAAGCTCT----TGTG-A-A-TG-AAT-AT-ATT-T----AA-----AC-TGC-AA--TTTACCTA----GCTTTTAT-CT--ATTATTTTGACTGCTGTGAGA---CA--ACTTAATTC-TTTTGGAttatatacttaaagattata
gi|4                          :                                   attgAGA-AAACAACTTGTAATT-G-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATGAAATAAT-ATT-TT-GAAA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTA-TTTGACTG-TGTGAGAATTCT--ACTT-ATTC-TTTTGGAtataaatatataaattatat
gi|5                          :                                          TAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-G-----------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-t
gi|6                          : taatagaaagcatctcatatcaattatgtcgACGTTTCAGATAAACAACT-GTAATA-G-CAATTTGT-GTATTCA---CCTGAA--AT-G--GATGAAAAAAATTC-AG-AAAGCGCT----TGTGAA-AATG-AAT-AT-ATT-TT-G-AA-----ACTTGCAAA-ATTTACCTG----CTTTTTAT-AT--ATTtatatatatatatatat
gi|7                          :                                                      AATTTGGAAATTTGTAGTAATCAA--CCTGAAAGAG-G--AATG-TAAAAATCC-AG-AAAGCGGC----TGTA-A-AATG-AAT-ATCATT-TT-G-AAACTGGAC-TGC-AA-ATTTACCTA----CTTTTTAT-CT--AT
gi|8                          :                              aacacgtaCAGATACAGAACT-GTA--TTG-AAATTTGT-GTATTGAGAGCCTGAA-GATTG--GGTG--AAGAATC--AGCAAGGCG-T----TGTG-A-AATG-AATGAT-ATT-TT-G--A-----AC-TGC-AAGATTTACTTG----CTTTTTAT-
gi|9                          :                                                                                                 aaataAAATCC--G-AAAGCGCTAGGTTATG-GCAATG-AAT-A--ATCGTT-A-CA-----AC-TAC-AT-ATTTTTTTA-----TTTTTAT-TTTTATTATTTCGACTG-TGTGATA--CAA--ACGC-TTTC-TTTT


blockSeqs                     :                                                   T        G        T       GAG      A   T TA    AA        G  C        AGGT    A C    A   A  C   G  T A  ACTGG  T   A  G         GGGT        G  TT             C       AT   AG    A    T
blockSeqs                     :                                                   .        .        A       A        .   . .     T         .  .        .       . .    .   G  .   .  . .  .      .   .  .         .           .  .              .       .    .     .    .
blockSeqs                     :                                                   .        .        .       .        .   . .     T         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .              .       .    .     .    .
blockSeqs                     :                                                   .        .        .       .        .   . .     T         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .              .       .    .     .    .
blockSeqs                     :                                                   .        .        .       .        .   . .     T         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .              .       .    .     .    .
blockSeqs                     :                                                            .        .       .        .   . .     A         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .              .       .    .     .    .
blockSeqs                     :                                                            .        .       .        .   . .     T         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .              .       .    .           
blockSeqs                     :                                                            .        .       .        .   . .     .         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .                                       
blockSeqs                     :                                                            .        .       .        .   . .     .         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .                                       
blockSeqs                     :                                                            .        .       .        .   . .     .         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .                                       
blockSeqs                     :                                                            .        .       .        .   . .     .         .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .  .                                       
blockSeqs                     :                                                                                                            .  .        .       . .    .   .  .   .  . .  .      .   .  .         .           .                                          
blockSeqs                     :                                                                                                            .  .        .       . .    .   .  .   .  . .  .      .   .  .                                                                
blockSeqs                     :                                                                                                                                       .   .  .   .  . .  .      .   .  .                                                                


blockSeqCons                  :                                
originalCons                  :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
finalCons                     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA





Alignments
lowQualScore                  :                                                                                                  11                                                                                                                                            
lowQualScore                  :                                          0        6        3        6       999      3   3 44    33        2  2        6666    2 2    2   5  2   2  2 2  66666  2   2  2         6666        3  44             5       66   66    5    5       
lowQualScore                  :                                          .        .        .        .       ...      .   . ..    ..        .  .        ....    . .    .   .  .   .  . .  .....  .   .  .         ....        .  ..             .       ..   ..    .    .       
lowQualScore                  :                                          8        7        3        7       222      3   3 66    00        9  9        1111    9 9    7   3  7   7  7 7  77777  7   7  7         5555        1  66             0       99   99    7    7       
consensus                     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
Reference ( family-5785 )     :                                ACGTTTCAGATAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|1                          :                                ACGTTTCAAATAAATAACT-GTAATTTG-AATTTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TTTTGGA
gi|10                         :                                                                                                                              TG-A-AATG-AAT-AT-ATT-TTTG-AA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTC-TT
gi|11                         :                                                         TTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATT-AAT-AT-ATT-TT-T-AA-----AC-TGC-AA-ATGTACCTG----CTTTTTAT-CT--ggattatatatatataatatata
gi|12                         :                                                            -AAATTTGT---ATTCA---CATGAG-AAT-G--GATG-TTAAAATCC-AG-AAATCGCT----AGTG-A-TTTG--AT-AT-TCT-TG-G-AA-----AC-TGC-AT-ATTT-CC------CTTTTTA
gi|13                         :                                              tattT-GTAATTTG-AAATTTGTTGTATTCA---CCTGAG-------------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-att
gi|14                         :                                                                                                                                    ATG-AAT-AT-ATT-TC-A-AA-----AC-TGC-AA-AATTACCTGGGGTTTTTTTGTGTT--ATTATTTTGAC---TGCGATA--TCA--
gi|15                         :                                                         TTA-AAATTT-T-GTATTCA---TTTGAG-GAT-ATAGATG-TCAAAATCC-AG-AAAGCACT----T
gi|16                         :                                                                                                         TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT---------------------A-ATTTACCTA----ATTTATAT-AT--AT
gi|17                         :                                                                                                                                                                                           TAT-CT--ATTATTTTGACTG-TGTGAGA--TCAAGACTT-TTTG-CTTTGGA
gi|2                          :                                                         TTG-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-TAAAAATCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-ATTTACCTG----CTTTCTAT-CT--ATTATTTTGACTG-TGTGAGA--TCA--ACTT-ATTCTTTTTGGA
gi|3                          :                                                    aaAATTTG-AAATTTGT-GTATTCA---C--GAA-GAT-G--GATG--AAAAATCCGAG-AAAGCTCT----TGTG-A-A-TG-AAT-AT-ATT-T----AA-----AC-TGC-AA--TTTACCTA----GCTTTTAT-CT--ATTATTTTGACTGCTGTGAGA---CA--ACTTAATTC-TTTTGGAttatatacttaaagattata
gi|4                          :                                   attgAGA-AAACAACTTGTAATT-G-AAATTTGT-GTATTCA---CCTGAA-GAT-G--GATG-AAAAAATCC-AG-AAAGCGCT----TGTG-A-AATGAAATAAT-ATT-TT-GAAA-----AC-TGC-AA-ATTTACCTG----CTTTTTAT-CT--ATTA-TTTGACTG-TGTGAGAATTCT--ACTT-ATTC-TTTTGGAtataaatatataaattatat
gi|5                          :                                          TAAACAACT-GTAATTTG-AAATTTGT-GTATTCA---CCTGAA-G-----------------TCC-AG-AAAGCGCT----TGTG-A-AATG-AAT-AT-ATT-TT-G-AA-----AC-TGC-AA-t
gi|6                          : taatagaaagcatctcatatcaattatgtcgACGTTTCAGATAAACAACT-GTAATA-G-CAATTTGT-GTATTCA---CCTGAA--AT-G--GATGAAAAAAATTC-AG-AAAGCGCT----TGTGAA-AATG-AAT-AT-ATT-TT-G-AA-----ACTTGCAAA-ATTTACCTG----CTTTTTAT-AT--ATTtatatatatatatatat
gi|7                          :                                                      AATTTGGAAATTTGTAGTAATCAA--CCTGAAAGAG-G--AATG-TAAAAATCC-AG-AAAGCGGC----TGTA-A-AATG-AAT-ATCATT-TT-G-AAACTGGAC-TGC-AA-ATTTACCTA----CTTTTTAT-CT--AT
gi|8                          :                              aacacgtaCAGATACAGAACT-GTA--TTG-AAATTTGT-GTATTGAGAGCCTGAA-GATTG--GGTG--AAGAATC--AGCAAGGCG-T----TGTG-A-AATG-AATGAT-ATT-TT-G--A-----AC-TGC-AAGATTTACTTG----CTTTTTAT-
gi|9                          :                                                                                                 aaataAAATCC--G-AAAGCGCTAGGTTATG-GCAATG-AAT-A--ATCGTT-A-CA-----AC-TAC-AT-ATTTTTTTA-----TTTTTAT-TTTTATTATTTCGACTG-TGTGATA--CAA--ACGC-TTTC-TTTT