lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 1111 11111 11111 11 11 222 000000000000000000000000000000000000000000 111 333333333333 666666666666666666666666 1111 2222222222 33333 111 1 22222 1 11 11111 11 33333 111 1111 1 111111 3333333333333333 11 22222222222 11
lowQualScore : 6 5 3 99 3 2 3 7 7777 22222 22222 88 8 11 555 3 888888888888888888888888888888888888888888 8888 888 2 88 5 333333333333 5 5 888888888888888888888888 7777 2 3 0 4 4 2222222222 4 66666 555 0 2 55 66666 55 6 3 4 11 3 3 22222 55 99 5 4 2 5 55 1 11111 111 4444 2 6 1 3 666666 6 6 5 5555555555555555 0 3 11 6 33333333333 3 55 4 0 0 4 99 00 66
lowQualScore : . . . .. . . . . .... ..... ..... .. . .. ... . .......................................... .... ... . .. . ............ . . ........................ .... . . . . . .......... . ..... ... . . .. ..... .. . . . .. . . ..... .. .. . . . . .. . ..... ... .... . . . . ...... . . . ................ . . .. . ........... . .. . . . . .. .. ..
lowQualScore : 0 0 3 33 3 5 2 0 0000 00000 22222 22 0 00 777 7 222222222222222222222222222222222222222222 1111 999 1 77 7 000000000000 0 0 555555555555555555555555 8888 4 7 8 4 4 7777777777 4 88888 777 4 5 55 11111 00 7 3 4 22 3 3 22222 55 22 7 3 7 7 33 7 22222 777 2222 5 7 8 2 444444 0 4 0 9999999999999999 2 4 00 0 55555555555 6 55 9 1 7 8 11 66 11
consensus : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATC--CG-CCCGCA-AA-CGTCAA--AAGCAGACGACCGGT-----AATT------TTAGA-----NA---------AAAAATGA-G-ANTGGN-CG-CGGCC--CGG-GTGCCAGA-ACG-AAACACGCA--TAAAT--TT---ATTT--C-TTTTGAAGACCATCTATCTCT-AG-TTT--A--NTGC-T-TTTTGTGGTC-NTTGCA--TGCGGCCA--CATCG--AATTTTCTC--CTGAA-AGGT-GGAAAAGGTGGA-GAAAAT-TGC--T--CGTTTT--CCGGATTCCGGA-TAGGTTCGAANAGTACGCA-CCA-TTACA-G---AGACCTAGA---TCCGC----CGATATG-CNTGCATATATG------GATACTTGGGATCATCA-ACTT----TG---TG--TATATCCACGATTTGTATG-GATGATC-ATTNTTN-ATTTTTTAA--GTATTTTACAGGGCCTANTTATGATAAC--AA--ACGTACCTAG
Reference ( gi|2 ) : TTATCTCATTCCGAAC-CAGC-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATC--CG-CC-ACA-AA-TGTCAA--TAGCAGACGAC---------AATT------TTAAA-----AA---------AAAAATGA-G-AATGGC-CA-CGGCC--CGG-GTGCCAGA-ACG-AAACATGCA--TAGAT--C----ATTT--C-TTTTGAAAACCATCTATCTCT-AG-TTT--A--TTGC-T-TTTTGTGGTCTTTTGCG--TGTGCCCA--CATTT--AATTTTCTC--CTGAA-AGGT-GAAAAAAGTTGA-GAAAAT-TGC--C--CGTTTT--CCGGATTCTGGA-TAGGTTCGAAGAGTACGCA-CCT-TTACATA---AGACCTAGA---TCCGC----CGATATG-CTTGCATATATG------GATACTCGAGATCATCA-ACTT----TA---TG--AAAATCCATGATTTGTATT-GATAATT-ATTCTTT-ATTTTTTAA--GTATTTTACAGGGCCCATTTATTATAAC--AA--ACGTACCTAG
gi|8 : TTATCTCATTCTGCACACAGT-ACG-TCTCTCTGTCATC-CGGT----GCCATCGT--G--ATC--CG-CCCACA-AA-CGTCAA--AAACAGATG-------------TT------TTAAT-----AA---------A----TGACG-AATGGG-CAACGGCC---GG-GTGCCAGA-ACG-AAACATG----------------------C-TTTTGAAAACCA-CCATCTCTAAA-TTT--A--ATGA-T-TTTTGTGGTCTTTTGCT--TGTGGCCA--CATTG--AATTTTCTC--CTGAA-AGAT-GGGAAAAAGTGA-GAAAAT-T
gi|1 : TATCTCATTCTGCAC-CAGTTGCGGTCTCTCT-TCA-CTCAGC----GCTGTCGC--G--ATC--CG-CC-TAA-AA-TGTTCATTTAGCAGACGACCGAT-----ATTT------TT--------TA---------AAAAGTGA-GTAATGGG-CA-CG--C--CGGTGTGCCAGA-ACGTAAACATGCACTCAGAT--CCCCTGTTT--CTTTTTGAAACCCATC-ATCTTT-AG-TGT--ACTTTGCTT-TTTTGTGTTC-TTTGCGGTTGTGCCCACCCATTTTAAATTTTCTC--CTGA----GT-G-GAACAGTTGATGAAAA--TGT--CTGCGTTTTTCCTGGATTCCGGATTAGGTTCGAAGAGTACGCATTCTATTA-ATACACGGACCTAGATACTCCTCTTCGCGATATGCCTTGCATATATACTTCTTGGCATTTCA-ATCTTCACACTT----TACCTCGCTCAAATCCATGATTTGTA-T-GATTATT-ATTC-TT-ATTTTTTAA--GTA-TTTACA-GGCCCATTTA-TAGAAC--AA--ACGTACCTAGtctaatt
gi|9 : CTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCCCGGT----GCCATCGT--G--ATC--CGCCC-ACA-AA-CGTCAA--AAACAGATG-------------TT------TT--------TA---------ATAAATGA-G-AATGGG-CA-CGG-C--CGG-GTGCCAGA-ACG-AAACATG----------------------C-TTTTGAAAACCACCAATCTCT-AA-TTT--A--ATGA-T-TTTTGTGGTC-TTTGCT--TGTGGCCA--CATTG--AATTTTCTC--CTGAA-AGATGGGAAAAAGTGGA-GAAAAT-Tc
gi|3 : GTCATATCGTCATTTGTCATCGC--GCGATCTTC--CC-GCAGAA-CATCAA--AAGCAGACGACTGGT-----CATT------TTAGA-----TTTTTTTTTTTAAAATTGA----ATTGC-CG-CAGCCATCGG-AC-CCAGATACG-AAACATGCA--TAAAT--TT---AATT--C-TTTTGAAGATTATCTATCTCT-AG-TTTTGA--TACC-TATTTTGTCGA----TGCAC-TGCGGCCA--CATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAA-GAAAAT-TGCTTC--C-TTTT--CCGGATTACGGA-TAGGTTCGAATAGTA-ACA-CCA-TTATA-G---AGACCTAGA---TCCGC----CGATATG-CATGCATATATG------GATACTTGCGATCATCA-ACTT----TG---TA--TATATTCAC-ATTTGTATG-GAT-ATC-ATGTTTA-ATTTTTTAA--GTAATTTACAGGGCCTAAATATT-CAACA-AA--ACGTACCtc
gi|6 : c----GTCATCGCATG--ACC--TG-CCCGCA-AAACATCAA--AAGCAGACGACTGGTGATTAGATT------TTTAA-----AA---------AA---TGA-A-ATTGGC-CG-CAGACATCGA----CCAGA-ACG-AAACATGTT--TTAAT--TT---ATTTATT-TTTTGAAGAT-ATCTATCTCT-AA-TTT--G--ATAC-T-TTTT-TGGTCGAT-GCA--TGCGACCA--CATCA--AATTATCTC--CTAAC-AAGT-GTCAAAAAT----GAAAAT-TGC--T--CGTTTC--CCGGATTTCGGA-TAGGTTCTAATAGTACACA-CCA-TTACc
gi|11 : CAA---AGCAGA--AC---------AACTGGTGAATTAGATATTTAA---------AAAAATGAAG-ATTAGCGCG-CAGCA--AAA-GAGCCAGA-ACG-AAG-ACGCA---AAATTGT----ATTT--G-TTTTGAAGA----------TT-AG-TTT----------T-TTTTTTGATC-GATGCA--TTTGACCA--CA-----AGCATTTTC--CCGAA-AGGC-G------GTTAG-GAAAATGTGC--T--CGTTTT--ta
gi|4 : aag-----AA---------AACAATGA-A-ATTGGT-CA-CG----------TGCCAGA-AAG-AAACAAGCA--TAAAT--TT---ATTT--C-TTTTGAAGAT-ACCTATCTCT-AGATTG--A--TGGC-T-TTTTGTGGT-----GCA--TG----CA--TA-----AATTGCATC--CTGAA-AGGT-GGAAAAGGGGGA-GAAAAT-TGC--T--CGTTTG--TCGGATTCCGGA-TAGGCTCTAACAGTATTCA-CAT-TGCCA-G---AGGTTTAGA---TTCGT----CGATATG-TGTGCA----------------CTTGGGATCATCA-ACTT----TG---TG--TATATCCACGATTTGTATG-CACAACC-ATTGTTG-AATATTTAA--GTATTTTACAGAGCCTAGTTGTGATAAC--AA--ACGTAC
gi|12 : ttct-ACG-AAACACCCA--TA-AT--TGT--ATTT--A-TTTTGAAGAT-ATCTATCCCT-GG-TTT--G--GTGC-T-TTTTGTGGT-TCATACA--TGTGGTAA--CATTA--AACTTTCTC--CTGAA-ATGT-GGAAAAGGCGAA-GACAAC-TGC--T--CGTATT--CCAGATTC
gi|5 : TT--T-TTTTAAA---CATCTATA-CT-AG-TTT--G--ATGT-T-TTTTGTGGTCCAT-GCA--TGTGGCCA--CATCG--AATTTTCTATACTAAA-AGGT-GGAAAAAGTGAA-GAAAAT-TAC--T--CATTTT--CCGGATTTCGGC-TAGGTTCGAAGAGTACATA-CCA-TTACAAG---AGACCTAGA---TCTGC----C---ATA-C------------------ATACTTGGGATCAT-----------------------ATCCATGATTTATGTG-GATAATC-ATCGTTA-AATTCTTAA--Gatg
gi|7 : ttcttttttaaaacactgtagccgcttttaaatcagctactaagttatacccaaaatttataGCA--TGCGGCCA--CATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAA-GAAAAT-TGC--T--CGTTTT--CCGGATTACGGA-TAGGTTCGAATAGTACACA-CCA-TTATGAG---AGACCTAGA---TCCGC----CGATATG-CATGCATATATG------GATACTTGCGATCATCA-ACTT----TG---TA--TATATTCACAATTTGTATTGGATGATCAATTGTTTAATTTTTTAA--GTAATTTACAGGGCCTAAATATT-CAACAAAA--ACGTACCgta
gi|17 : C--CTGAA-ATGT-GGAAAAGGCGAA-GAAAAC-TGC--T--CGTATT--CCGGATTCctaa
gi|10 : TGAA-AGAT-GGAAAAAGTGGA-GAAAAT-TGC--C--CATTTT--CCGGAT--------GGGTTCGAAGATTACGCA-CCA-TTACATG---ATACCTAGA---TCCTC----ATATATG-CTTGCATATATG------GATACTTGGGATCATCA-ACTT----CA---TG--AAAATCCATGATTTGTATT-GATGAAT-ATTCTTT-ATTTTTTAA--GTATTTTACAGCGCCCATTTATGATAAC--AA--ACGTACCT
gi|14 : G------GATACTTGGTGTCATCA-ACGT----TG---TG--TATACACATTATTTGTATG-GATAA----------------TCAA--GTATTTAACAGAGTATAGTTATGAGAAC--AA--ACGTA
gi|13 : ATACTTGGGGTCATGA-ACTTCGTGTA---TA--CATACACACAATTTGTATG-GATGA----------------TCAA--GTAGTTTACAAAGTGTATTTTTAATAAC--TA--ACGT
gi|15 : TTCTTC-ATTTTTGAA--GTATTTTAAATGGCCTTGTTATGATAAC--AAGCGCGTACCTAG
gi|16 : TTTCT-AATTTTTAAAAGTATTTTACAGGGCCCATTTATGATAA---AA--ACGTACct
Alignments
lowQualScore : 1 1 1 1111 7777777777777777777777777777777 111 222222 111111111111 11 111 1111 2222222 111 1111 111111 11111
lowQualScore : 0 0 0 0 3 4444 99 99 11 6 6 77 5 0000000000000000000000000000000 555 1 66 5 000000 66 4 4 2 1 666666666666 4 55 4 1 33 1 2 4 999 55 4 4 222 3 88 0 55 6666 44 6 6 2 3 3 3 55 0 5 1 1 66 0000000 000 2222 0 666 1 222222 4 11111 1 88888 1 4 5 777777 7 0 3 1 888 4 55
lowQualScore : . . . . . .... .. .. .. . . .. . ............................... ... . .. . ...... .. . . . . ............ . .. . . .. . . . ... .. . . ... . .. . .. .... .. . . . . . . .. . . . . .. ....... ... .... . ... . ...... . ..... . ..... . . . ...... . . . . ... . ..
lowQualScore : 0 0 0 8 8 2222 22 22 77 7 7 99 7 1111111111111111111111111111111 222 0 00 0 666666 44 4 4 1 6 999999999999 0 55 0 4 00 3 4 0 888 55 0 0 888 6 66 2 00 3333 66 2 2 5 1 3 3 55 7 0 0 1 99 2222222 000 1111 7 777 4 888888 4 11111 1 66666 9 4 4 888888 1 1 6 0 777 0 55
consensus : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT-AATTTTAGAT----A---------AAAAATGA-G-ANTGGC-CG-CGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGTTT-GAT--G-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
Reference ( family-5704 ) : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCGCA-AA-CGTCAAA--AGCAGA-CGACCGGT-AATTTTAGAN----A---------AAAAATGA-G-ANTGGN-CG-CGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGTTT-ANT--G-CTTTTT-GTGGTC-NTT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGGAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-NTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
gi|1 : TATCTCATTCTGCAC-CAGTTGCGGTCTCTCT-TCA-CTCAGC----GCTGTCGC--G--ATCCGCCTA-A-AA-TGTTCATTTAGCAGA-CGACCGAT-ATTTTT---T----A---------AAAAGTGA-GTAATGGG-CA-CG--C--CGGTGTGCCAGA-ACGTAAACATGCACTCAGATCCCCTGT-TT--CTTTTTGAAACCCATC-ATCTTT-AGTGT-ACTTTG-CTTTTTTGTGTTC-TTT-GCGGTTGTGCCCACCCATTTTAAATTTTCTC--CTGA----GT-GGAACAGTTGATGAAAAT-GTC-TGCGTTTTTCCTGGATTCCGGATTAGGTTCGAAGAGTACGCATTCTATTAATAC-A-CGGACCTAGATACTCCTCTTCGCGATATGCCTTGCATATATACTT-CTTGGCATTTCAATCTTCACACTTTACCTCGCTCAAAT---C-CATGATTTGTA-TG-ATTATT-ATT-CTT-ATTTTTTAA-GTATTT-ACAGG-CCCATTTAT---AGAAC-AA--ACGTACCTAG
gi|10 : TGAA-AGAT-GGAAAAAGTGGAGAAAAT-TGC-C-CATTTTCC--GGAT--------GGGTTCGAAGATTACGCA--CCATTA---C-ATGATACCTAGAT---CCTC----ATATATGCTT-GCATATATGGATACTTGG------GATCATCA-ACTTC-----ATGAAAAT---C-CATGATTTGTA-TTGATGAAT-ATT-CTTTATTTTTTAA-GTATTTTACAGCGCCCATTTAT--GATAAC-AA--ACGTACCTc
gi|11 : AA--AGCAGAACAACTGGTGAATT--AGAT----ATTTAA----AAAAATGAAG-ATTAGCGCG-CAGCA--AAA-GAGCCAGA-ACG-AAG-ACGCA---AAATTG--TAT-TT--GTTTT-GAAGA----------TT-AGTTT---------TTTTT-TTGATC-GAT-GCA--TTTGACCAC--A-A--GCATTT--TC--CCGAA-AGGC-------GGTTAGGAAAATGTGC-T-CGTTTT
gi|12 : aagc-ACG-AAACACCCAT--AATTG---TAT-TT--ATTTT-GAAGAT-ATCTATCCCT-GGTTT-GGT--G-CTTTTT-GTGGTT-CAT-ACA--TGTGGTAAC--ATT--AAACTTTCTC--CTGAA-ATGT-GGAAAAGGCGAAGACAAC-TGC-T-CGTATTCC--AGATTC
gi|13 : ATACTTGG------GGTCATGA-ACTTC-----GTGTATACATACACACAATTTGTA-TGGATGATC----------------AA-GTAGTTTACAAAGTGTATTTTT--AATAAC-TA--ACGTatg
gi|14 : GGATACTTGG------TGTCATCA-ACGTT-----GTGTATAC---A-CATTATTTGTA-TGGATAATC----------------AA-GTATTTAACAGAGTATAGTTAT--GAGAAC-AA--ACGTA
gi|15 : TT-CTTCATTTTTGAA-GTATTTTAAATGGCCTTGTTAT--GATAAC-AAGCGCGTACCTAG
gi|16 : TT-TCTAATTTTTAAAAGTATTTTACAGGGCCCATTTAT--GATAA--AA--ACGTACct
gi|17 : C--CTGAA-ATGT-GGAAAAGGCGAAGAAAAC-TGC-T-CGTATTCC--GGATTCta
gi|2 : TTATCTCATTCCGAAC-CAGC-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCC-ACA-AA-TGTCAAT--AGCAGA-CGAC-----AATTTTAAAA----A---------AAAAATGA-G-AATGGC-CA-CGGCC--CGG-GTGCCAGA-ACG-AAACATGCAT--AGATC----AT-TT--CTTTT-GAAAACCATCTATCTCT-AGTTT-ATT--G-CTTTTT-GTGGTC-TTTTGCG--TGTGCCCAC--ATT--TAATTTTCTC--CTGAA-AGGT-GAAAAAAGTTGAGAAAAT-TGC-C-CGTTTTCC--GGATTCTGGAT-AGGTTCGAAGAGTACGCA--CCTTTA---C-ATAAGACCTAGAT---CCGC----CGATATGCTT-GCATATATGGATACTCGA------GATCATCA-ACTTT-----ATGAAAAT---C-CATGATTTGTA-TTGATAATT-ATT-CTTTATTTTTTAA-GTATTTTACAGGGCCCATTTAT--TATAAC-AA--ACGTACCTAG
gi|3 : GTCATATCGTCATTTGTCATCGC--GCGATCTTCCCGCAGAA-CATCAAA--AGCAGA-CGACTGGT-CATTTTAGAT----TTTTTTTTTTAAAATTGA---ATTG-C-CG-CAGCCATCGG-AC-CCAGATACG-AAACATGCAT--AAATT---TAA-TT--CTTTT-GAAGATTATCTATCTCT-AGTTTTGAT--A-CCTATT-TTG-TC-GAT-GCAC-TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGCTT-CCTTTTCC--GGATTACGGAT-AGGTTCGAATAGTA-ACA--CCATTA---T-A-GAGACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CAC-ATTTGTA-TGGAT-ATC-ATG-TTTAATTTTTTAA-GTAATTTACAGGGCCTAAATAT--T-CAACAAA--ACGTACC
gi|4 : c----A---------AACAATGA-A-ATTGGT-CA-CG----------TGCCAGA-AAG-AAACAAGCAT--AAATT---TAT-TT--CTTTT-GAAGAT-ACCTATCTCT-AGATT-GAT--GGCTTTTT-GTGGT------GCA--TGC--------AT---AAATTGCATC--CTGAA-AGGT-GGAAAAGGGGGAGAAAAT-TGC-T-CGTTTGTC--GGATTCCGGAT-AGGCTCTAACAGTATTCA--C-ATTG---CCA-GAGGTTTAGAT---TCGT----CGATATGTGT-GCA----------CTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGCACAACC-ATT-GTTGAATATTTAA-GTATTTTACAGAGCCTAGTTGT--GATAAC-AA--ACGTACc
gi|5 : ttctaATACCCA---AAATT---TATATT--TTTTT-AAA---CATCTATA-CT-AGTTT-GAT--G-TTTTTT-GTGGTC-CAT-GCA--TGTGGCCAC--ATC--GAATTTTCTATACTAAA-AGGT-GGAAAAAGTGAAGAAAAT-TAC-T-CATTTTCC--GGATTTCGGCT-AGGTTCGAAGAGTACATA--CCATTA---CAA-GAGACCTAGAT---CTGC----C---ATAC-------------ATACTTGG------GATC-------------------ATAT---C-CATGATTTATG-TGGATAATC-ATC-GTTAAATTCTTAA-G
gi|6 : ttcttttttaaaacactgtagccgcttttaaatcagctactaagtt----GTCATCGCATG--ACCTGCCCGCA-AAACATCAAA--AGCAGA-CGACTGGT-GATT--AGATTTTTA---------AAAAATGA-A-ATTGGC-CG-CAGACATCGA----CCAGA-ACG-AAACATGTTT--TAATT---TAT-TTATTTTTT-GAAGAT-ATCTATCTCT-AATTT-GAT--A-CTTTTT--TGGTC-GAT-GCA--TGCGACCAC--ATC--AAATTATCTC--CTAAC-AAGT-GTCAAAAATG---AAAAT-TGC-T-CGTTTCCC--GGATTTCGGAT-AGGTTCTAATAGTACACA--CCATTA---C-gta
gi|7 : -GCA--TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGC-T-CGTTTTCC--GGATTACGGAT-AGGTTCGAATAGTACACA--CCATTA---TGA-GAGACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CACAATTTGTATTGGATGATCAATTGTTTAATTTTTTAA-GTAATTTACAGGGCCTAAATATTCAACAA--AA--ACGTACCta
gi|8 : TTATCTCATTCTGCACACAGT-ACG-TCTCTCTGTCATC-CGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG---------TTTTA-----------------ATAAATGACG-AATGGG-CAACGGCC---GG-GTGCCAGA-ACG-AAACATG---------------------CTTTT-GAAAACCA-CCATCTCTAAATTT-AAT--G-ATTTTT-GTGGTCTTTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGT-GAGAAAAT-TTC-T-ctaa
gi|9 : CTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCCCGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG---------TTTT---T----A---------ATAAATGA-G-AATGGG-CA-CGG-C--CGG-GTGCCAGA-ACG-AAACATG---------------------CTTTT-GAAAACCACCAATCTCT-AATTT-AAT--G-ATTTTT-GTGGTC-TTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTGGAGAAAAT-Taatt
Alignments
lowQualScore : 1 1 1 1111 5555555555555555555555555555555 111 22222 111111111111 11 1111 2222222 111 1111 111111 11111
lowQualScore : 0 0 0 0 3 4444 99 99 1 6 6 77 5 6666666666666666666666666666666 5 555 1 5 5 44444 66 4 4 2 1 666666666666 4 55 4 1 22 1 2 4 8888 88 4 4 888 3 88 0 55 6666 44 6 6 3 3 3 55 0 5 1 1 66 0000000 000 2222 0 666 1 222222 4 11111 1 88888 1 4 5 777777 7 0 3 1 888 4 55
lowQualScore : . . . . . .... .. .. . . . .. . ............................... . ... . . . ..... .. . . . . ............ . .. . . .. . . . .... .. . . ... . .. . .. .... .. . . . . . .. . . . . .. ....... ... .... . ... . ...... . ..... . ..... . . . ...... . . . . ... . ..
lowQualScore : 0 0 0 8 8 2222 22 22 0 7 7 99 7 9999999999999999999999999999999 0 222 0 0 0 44444 44 4 4 1 6 999999999999 0 55 0 4 11 3 4 0 5555 88 0 0 888 6 66 2 00 3333 66 2 2 1 3 3 55 7 0 0 1 99 2222222 000 1111 7 777 4 888888 4 11111 1 66666 9 4 4 777777 1 1 6 0 777 0 55
consensus : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT-AATTTTAGAT----A---------AAA-AATGA-G-ANT-GGC-CGCGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
Reference ( family-5704 ) : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT-AATTTTAGAT----A---------AAA-AATGA-G-ANT-GGC-CGCGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
gi|1 : TATCTCATTCTGCAC-CAGTTGCGGTCTCTCT-TCA-CTCAGC----GCTGTCGC--G--ATCCGCCTA-A-AA-TGTTCATTTAGCAGA-CGACCGAT-ATTTTT---T----A---------AAA-AGTGA-GTAAT-GGG-CACG--C--CGGTGTGCCAGA-ACGTAAACATGCACTCAGATCCCCTGT-TT--CTTTTTGAAACCCATC-ATCTTT-AGTGTACTT---TG-CTTTTTTGTGTTC-TTT-GCGGTTGTGCCCACCCATTTTAAATTTTCTC--CTGA----GT-GGAACAGTTGATGAAAAT-GTC-TGCGTTTTTCCTGGATTCCGGATTAGGTTCGAAGAGTACGCATTCTATTAATAC-A-CGGACCTAGATACTCCTCTTCGCGATATGCCTTGCATATATACTT-CTTGGCATTTCAATCTTCACACTTTACCTCGCTCAAAT---C-CATGATTTGTA-TG-ATTATT-ATT-CTT-ATTTTTTAA-GTATTT-ACAGG-CCCATTTAT---AGAAC-AA--ACGTACCTAG
gi|10 : TGAA-AGAT-GGAAAAAGTGGAGAAAAT-TGC-C-CATTTTCC--GGAT--------GGGTTCGAAGATTACGCA--CCATTA---C-ATGATACCTAGAT---CCTC----ATATATGCTT-GCATATATGGATACTTGG------GATCATCA-ACTTC-----ATGAAAAT---C-CATGATTTGTA-TTGATGAAT-ATT-CTTTATTTTTTAA-GTATTTTACAGCGCCCATTTAT--GATAAC-AA--ACGTACCTc
gi|11 : AA--AGCAGAACAACTGGTGAATT--AGAT----ATTTAA----AAA-AATGAAG-ATT-AGCGCGCAGCA--AAA-GAGCCAGA-ACG-AAG-ACGCA---AAATTG--TAT-TT--GTTTT-GAAGAT----------T-AGT----TT-------TTTTT-TTGATC-GAT-GCA--TTTGACCAC--A-A--GCATTTTCCC----GAA-AGGC-GG------TTAGGAAAATGTGC-T-CGTTTT
gi|12 : aagc-ACG-AAACACCCAT--AATTG---TAT-TT--ATTTT-GAAGAT-ATCTATCCCT-GGT----TT-GGTG-CTTTTT-GTGGTT-CAT-ACA--TGTGGTAAC--ATT--AAACTTTCTC--CTGAA-ATGT-GGAAAAGGCGAAGACAAC-TGC-T-CGTATTCC--AGATTC
gi|13 : ATACTTGG------GGTCATGA-ACTTC-----GTGTATACATACACACAATTTGTA-TGGATGATC----------------AA-GTAGTTTACAAAGTGTATTTTT--AATAAC-TA--ACGTatg
gi|14 : GGATACTTGG------TGTCATCA-ACGTT-----GTGTATAC---A-CATTATTTGTA-TGGATAATC----------------AA-GTATTTAACAGAGTATAGTTAT--GAGAAC-AA--ACGTA
gi|15 : TT-CTTCATTTTTGAA-GTATTTTAAATGGCCTTGTTAT--GATAAC-AAGCGCGTACCTAG
gi|16 : TT-TCTAATTTTTAAAAGTATTTTACAGGGCCCATTTAT--GATAA--AA--ACGTACct
gi|17 : C--CTGAA-ATGT-GGAAAAGGCGAAGAAAAC-TGC-T-CGTATTCC--GGATTCta
gi|2 : TTATCTCATTCCGAAC-CAGC-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCC-ACA-AA-TGTCAAT--AGCAGA-CGAC-----AATTTTAAAA----A---------AAA-AATGA-G-AAT-GGC-CACGGCC--CGG-GTGCCAGA-ACG-AAACATGCAT--AGATC----AT-TT--CTTTT-GAAAACCATCTATCTCT-AGT----TT-ATTG-CTTTTT-GTGGTC-TTTTGCG--TGTGCCCAC--ATT--TAATTTTCTC--CTGAA-AGGT-GAAAAAAGTTGAGAAAAT-TGC-C-CGTTTTCC--GGATTCTGGAT-AGGTTCGAAGAGTACGCA--CCTTTA---C-ATAAGACCTAGAT---CCGC----CGATATGCTT-GCATATATGGATACTCGA------GATCATCA-ACTTT-----ATGAAAAT---C-CATGATTTGTA-TTGATAATT-ATT-CTTTATTTTTTAA-GTATTTTACAGGGCCCATTTAT--TATAAC-AA--ACGTACCTAG
gi|3 : GTCATATCGTCATTTGTCATCGC--GCGATCTTCCCGCAGAA-CATCAAA--AGCAGA-CGACTGGT-CATTTTAGAT----TTTTTTTTTTAAA-ATTGA---ATT-G-C-CGCAGCCATCGG-AC-CCAGATACG-AAACATGCAT--AAATT---TAA-TT--CTTTT-GAAGATTATCTATCTCT-AGT----TTTGATA-CCTATT-TTG-TC-GAT-GCAC-TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGCTT-CCTTTTCC--GGATTACGGAT-AGGTTCGAATAGTA-ACA--CCATTA---T-A-GAGACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CAC-ATTTGTA-TGGAT-ATC-ATG-TTTAATTTTTTAA-GTAATTTACAGGGCCTAAATAT--T-CAACAAA--ACGTACC
gi|4 : cT----A---------AAACAATGA-A-ATT-GGT-CACG----------TGCCAGA-AAG-AAACAAGCAT--AAATT---TAT-TT--CTTTT-GAAGAT-ACCTATCTCT-AGA----TT-GATGGCTTTTT-GTGGT------GCA--TGC--------AT---AAATTGCATC--CTGAA-AGGT-GGAAAAGGGGGAGAAAAT-TGC-T-CGTTTGTC--GGATTCCGGAT-AGGCTCTAACAGTATTCA--C-ATTG---CCA-GAGGTTTAGAT---TCGT----CGATATGTGT-GCA----------CTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGCACAACC-ATT-GTTGAATATTTAA-GTATTTTACAGAGCCTAGTTGT--GATAAC-AA--ACGTACc
gi|5 : ttcATACCCA---AAATT---TATATT--TTTTT-AAA---CATCTATA-CT-AGT----TT-GATG-TTTTTT-GTGGTC-CAT-GCA--TGTGGCCAC--ATC--GAATTTTCTATACTAAA-AGGT-GGAAAAAGTGAAGAAAAT-TAC-T-CATTTTCC--GGATTTCGGCT-AGGTTCGAAGAGTACATA--CCATTA---CAA-GAGACCTAGAT---CTGC----C---ATAC-------------ATACTTGG------GATC-------------------ATAT---C-CATGATTTATG-TGGATAATC-ATC-GTTAAATTCTTAA-G
gi|6 : ttcttttttaaaacactgtagccgcttttaaatcagctactaagtt----GTCATCGCATG--ACCTGCCCGCA-AAACATCAAA--AGCAGA-CGACTGGT-GATT--AGATTTTTA---------AAA-AATGA-A-ATT-GGC-CGCAGACATCGA----CCAGA-ACG-AAACATGTTT--TAATT---TAT-TTATTTTTT-GAAGAT-ATCTATCTCT-AAT----TT-GATA-CTTTTT--TGGTC-GAT-GCA--TGCGACCAC--ATC--AAATTATCTC--CTAAC-AAGT-GTCAAAAATGAA---AAT-TGC-T-CGTTTCCC--GGATTTCGGAT-AGGTTCTAATAGTACACA--CCATTA---C-gta
gi|7 : -GCA--TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGC-T-CGTTTTCC--GGATTACGGAT-AGGTTCGAATAGTACACA--CCATTA---TGA-GAGACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CACAATTTGTATTGGATGATCAATTGTTTAATTTTTTAA-GTAATTTACAGGGCCTAAATATTCAACAA--AA--ACGTACCta
gi|8 : TTATCTCATTCTGCACACAGT-ACG-TCTCTCTGTCATC-CGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG---------TTTTA-AT----------------A-AATGACG-AATGGGC-AACGG-C--CGG-GTGCCAGA-ACG-AAACATG---------------------CTTTT-GAAAACCA-CCATCTCTAAAT----TT-AATG-ATTTTT-GTGGTCTTTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTG-AGAAAAT-TTC-T-ctaa
gi|9 : CTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCCCGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG---------TTTT---T----A---------ATA-AATGA-G-AAT-GGG-CACGG-C--CGG-GTGCCAGA-ACG-AAACATG---------------------CTTTT-GAAAACCACCAATCTCT-AAT----TT-AATG-ATTTTT-GTGGTC-TTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTGGAGAAAAT-Taatt
Alignments
lowQualScore : 1 1 1 1111 5555555555555555555555555555555 111 22222 111111111111 11 1111 2222222 111 1111 111111 11111
lowQualScore : 0 0 0 0 3 4444 99 99 1 6 6 77 5 6666666666666666666666666666666 5 555 1 5 5 44444 66 4 4 2 1 666666666666 4 55 4 1 22 1 2 4 8888 88 4 4 888 3 88 0 55 6666 44 6 6 3 3 3 55 0 5 1 1 66 0000000 000 2222 0 666 1 222222 4 11111 1 88888 1 4 5 777777 7 0 3 1 888 4 55
lowQualScore : . . . . . .... .. .. . . . .. . ............................... . ... . . . ..... .. . . . . ............ . .. . . .. . . . .... .. . . ... . .. . .. .... .. . . . . . .. . . . . .. ....... ... .... . ... . ...... . ..... . ..... . . . ...... . . . . ... . ..
lowQualScore : 0 0 0 8 8 2222 22 22 0 7 7 99 7 9999999999999999999999999999999 0 222 0 0 0 44444 44 4 4 1 6 999999999999 0 55 0 4 11 3 4 0 5555 88 0 0 888 6 66 2 00 3333 66 2 2 1 3 3 55 7 0 0 1 99 2222222 000 1111 7 777 4 888888 4 11111 1 66666 9 4 4 777777 1 1 6 0 777 0 55
consensus : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT-AATTTTAGAT----A---------AAA-AATGA-G-ANT-GGC-CGCGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
Reference ( family-5704 ) : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT-AATTTTAGAT----A---------AAA-AATGA-G-ANT-GGC-CGCGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
gi|1 : TATCTCATTCTGCAC-CAGTTGCGGTCTCTCT-TCA-CTCAGC----GCTGTCGC--G--ATCCGCCTA-A-AA-TGTTCATTTAGCAGA-CGACCGAT-ATTTTT---T----A---------AAA-AGTGA-GTAAT-GGG-CACG--C--CGGTGTGCCAGA-ACGTAAACATGCACTCAGATCCCCTGT-TT--CTTTTTGAAACCCATC-ATCTTT-AGTGTACTT---TG-CTTTTTTGTGTTC-TTT-GCGGTTGTGCCCACCCATTTTAAATTTTCTC--CTGA----GT-GGAACAGTTGATGAAAAT-GTC-TGCGTTTTTCCTGGATTCCGGATTAGGTTCGAAGAGTACGCATTCTATTAATAC-A-CGGACCTAGATACTCCTCTTCGCGATATGCCTTGCATATATACTT-CTTGGCATTTCAATCTTCACACTTTACCTCGCTCAAAT---C-CATGATTTGTA-TG-ATTATT-ATT-CTT-ATTTTTTAA-GTATTT-ACAGG-CCCATTTAT---AGAAC-AA--ACGTACCTAG
gi|10 : TGAA-AGAT-GGAAAAAGTGGAGAAAAT-TGC-C-CATTTTCC--GGAT--------GGGTTCGAAGATTACGCA--CCATTA---C-ATGATACCTAGAT---CCTC----ATATATGCTT-GCATATATGGATACTTGG------GATCATCA-ACTTC-----ATGAAAAT---C-CATGATTTGTA-TTGATGAAT-ATT-CTTTATTTTTTAA-GTATTTTACAGCGCCCATTTAT--GATAAC-AA--ACGTACCTc
gi|11 : AA--AGCAGAACAACTGGTGAATT--AGAT----ATTTAA----AAA-AATGAAG-ATT-AGCGCGCAGCA--AAA-GAGCCAGA-ACG-AAG-ACGCA---AAATTG--TAT-TT--GTTTT-GAAGAT----------T-AGT----TT-------TTTTT-TTGATC-GAT-GCA--TTTGACCAC--A-A--GCATTTTCCC----GAA-AGGC-GG------TTAGGAAAATGTGC-T-CGTTTT
gi|12 : aagc-ACG-AAACACCCAT--AATTG---TAT-TT--ATTTT-GAAGAT-ATCTATCCCT-GGT----TT-GGTG-CTTTTT-GTGGTT-CAT-ACA--TGTGGTAAC--ATT--AAACTTTCTC--CTGAA-ATGT-GGAAAAGGCGAAGACAAC-TGC-T-CGTATTCC--AGATTC
gi|13 : ATACTTGG------GGTCATGA-ACTTC-----GTGTATACATACACACAATTTGTA-TGGATGATC----------------AA-GTAGTTTACAAAGTGTATTTTT--AATAAC-TA--ACGTatg
gi|14 : GGATACTTGG------TGTCATCA-ACGTT-----GTGTATAC---A-CATTATTTGTA-TGGATAATC----------------AA-GTATTTAACAGAGTATAGTTAT--GAGAAC-AA--ACGTA
gi|15 : TT-CTTCATTTTTGAA-GTATTTTAAATGGCCTTGTTAT--GATAAC-AAGCGCGTACCTAG
gi|16 : TT-TCTAATTTTTAAAAGTATTTTACAGGGCCCATTTAT--GATAA--AA--ACGTACct
gi|17 : C--CTGAA-ATGT-GGAAAAGGCGAAGAAAAC-TGC-T-CGTATTCC--GGATTCta
gi|2 : TTATCTCATTCCGAAC-CAGC-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCC-ACA-AA-TGTCAAT--AGCAGA-CGAC-----AATTTTAAAA----A---------AAA-AATGA-G-AAT-GGC-CACGGCC--CGG-GTGCCAGA-ACG-AAACATGCAT--AGATC----AT-TT--CTTTT-GAAAACCATCTATCTCT-AGT----TT-ATTG-CTTTTT-GTGGTC-TTTTGCG--TGTGCCCAC--ATT--TAATTTTCTC--CTGAA-AGGT-GAAAAAAGTTGAGAAAAT-TGC-C-CGTTTTCC--GGATTCTGGAT-AGGTTCGAAGAGTACGCA--CCTTTA---C-ATAAGACCTAGAT---CCGC----CGATATGCTT-GCATATATGGATACTCGA------GATCATCA-ACTTT-----ATGAAAAT---C-CATGATTTGTA-TTGATAATT-ATT-CTTTATTTTTTAA-GTATTTTACAGGGCCCATTTAT--TATAAC-AA--ACGTACCTAG
gi|3 : GTCATATCGTCATTTGTCATCGC--GCGATCTTCCCGCAGAA-CATCAAA--AGCAGA-CGACTGGT-CATTTTAGAT----TTTTTTTTTTAAA-ATTGA---ATT-G-C-CGCAGCCATCGG-AC-CCAGATACG-AAACATGCAT--AAATT---TAA-TT--CTTTT-GAAGATTATCTATCTCT-AGT----TTTGATA-CCTATT-TTG-TC-GAT-GCAC-TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGCTT-CCTTTTCC--GGATTACGGAT-AGGTTCGAATAGTA-ACA--CCATTA---T-A-GAGACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CAC-ATTTGTA-TGGAT-ATC-ATG-TTTAATTTTTTAA-GTAATTTACAGGGCCTAAATAT--T-CAACAAA--ACGTACC
gi|4 : cT----A---------AAACAATGA-A-ATT-GGT-CACG----------TGCCAGA-AAG-AAACAAGCAT--AAATT---TAT-TT--CTTTT-GAAGAT-ACCTATCTCT-AGA----TT-GATGGCTTTTT-GTGGT------GCA--TGC--------AT---AAATTGCATC--CTGAA-AGGT-GGAAAAGGGGGAGAAAAT-TGC-T-CGTTTGTC--GGATTCCGGAT-AGGCTCTAACAGTATTCA--C-ATTG---CCA-GAGGTTTAGAT---TCGT----CGATATGTGT-GCA----------CTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGCACAACC-ATT-GTTGAATATTTAA-GTATTTTACAGAGCCTAGTTGT--GATAAC-AA--ACGTACc
gi|5 : ttcATACCCA---AAATT---TATATT--TTTTT-AAA---CATCTATA-CT-AGT----TT-GATG-TTTTTT-GTGGTC-CAT-GCA--TGTGGCCAC--ATC--GAATTTTCTATACTAAA-AGGT-GGAAAAAGTGAAGAAAAT-TAC-T-CATTTTCC--GGATTTCGGCT-AGGTTCGAAGAGTACATA--CCATTA---CAA-GAGACCTAGAT---CTGC----C---ATAC-------------ATACTTGG------GATC-------------------ATAT---C-CATGATTTATG-TGGATAATC-ATC-GTTAAATTCTTAA-G
gi|6 : ttcttttttaaaacactgtagccgcttttaaatcagctactaagtt----GTCATCGCATG--ACCTGCCCGCA-AAACATCAAA--AGCAGA-CGACTGGT-GATT--AGATTTTTA---------AAA-AATGA-A-ATT-GGC-CGCAGACATCGA----CCAGA-ACG-AAACATGTTT--TAATT---TAT-TTATTTTTT-GAAGAT-ATCTATCTCT-AAT----TT-GATA-CTTTTT--TGGTC-GAT-GCA--TGCGACCAC--ATC--AAATTATCTC--CTAAC-AAGT-GTCAAAAATGAA---AAT-TGC-T-CGTTTCCC--GGATTTCGGAT-AGGTTCTAATAGTACACA--CCATTA---C-gta
gi|7 : -GCA--TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGC-T-CGTTTTCC--GGATTACGGAT-AGGTTCGAATAGTACACA--CCATTA---TGA-GAGACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CACAATTTGTATTGGATGATCAATTGTTTAATTTTTTAA-GTAATTTACAGGGCCTAAATATTCAACAA--AA--ACGTACCta
gi|8 : TTATCTCATTCTGCACACAGT-ACG-TCTCTCTGTCATC-CGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG---------TTTTA-AT----------------A-AATGACG-AATGGGC-AACGG-C--CGG-GTGCCAGA-ACG-AAACATG---------------------CTTTT-GAAAACCA-CCATCTCTAAAT----TT-AATG-ATTTTT-GTGGTCTTTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTG-AGAAAAT-TTC-T-ctaa
gi|9 : CTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCCCGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG---------TTTT---T----A---------ATA-AATGA-G-AAT-GGG-CACGG-C--CGG-GTGCCAGA-ACG-AAACATG---------------------CTTTT-GAAAACCACCAATCTCT-AAT----TT-AATG-ATTTTT-GTGGTC-TTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTGGAGAAAAT-Taatt
blockSeqs : A . . T ATTT AT CG C G A . A ACTGGTCATTTTAGATTTTTTTTTTT C AG T G G GCCAT G T . C C AAATTGT A AT . G CC T T A . TG G . TTT T C . AG TA T G G T . . . G G . CAT . . TT T . . . A ATACA G T G AATTGT T A T TCA A GC
blockSeqs : . . . T . . . C . . . . ACTGGTGAATTAGATATTTAA . CG A . . GACAT G . . C C TAATTGT . . . G TT T T . . G . . GA . . . TA . T G . . . . . G G . CAT . . TT T . . . T C A . G ATTC C . T G . .
blockSeqs : . . . C . . . C . . . . ACTGGTGATTAGATTTTTA . G T . . GCA A . . T C TAAATTT . . . A CC T T . . A . . CA . . . TT . . . . . . . . T A . CCA . . AT T . . . T A T . A ATTC A . G A . .
blockSeqs : . . . . C . . . . ACAATTTTAAAAA . A T . . GCC G . . T C TAAATTT . . . G CC C T . . G . . TT . . . CG . . . . . . . . C T . CAA . . GT T . . . A C G . A ATGT T . G G . .
blockSeqs : . . . . . . . . TTTTAAT . A T . . GC G . . A C TTAATTT . . . G T T T . . G . . GA . . . CA . . . . . . . . G A . TGA . . AT . . . . T T G . A ATTG A . T G . .
blockSeqs : . . TTTTTA . G A . . GC . . . C C TAGATC . . . G T T T . . G . . CA . . . TG . . . . . . . . T A . TA . . . . . . . T C G . A ATCG G . T G . .
blockSeqs : . . A . . . . . . T T AAATTT . . . A T C C . . A . . GA . . . TG . . . . . . . . T A . . . . T C A . G . A . A T . .
blockSeqs : . . T . . . . . A C . A . . A . . TT . . . C . . . . . . . . . . . T . . . . A . G T . .
blockSeqs : T . . . . . . T . . . . . . . . . . . A . . . . . . . . . A G . .
blockSeqs : . . . C . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : ** ACTGGTATTAGATTTTTAA************ G** GC*** G* TAAATTT***** T* **** G* ** ** CG** ** ** CGA**** *** **** NT* ****** ***** G**
originalCons : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT-AATTTTAGAT----A---------AAA-AATGA-G-ANT-GGC-CGCGGCC--CGG-GTGCCAGA-ACG-AAACACGCAT--AAATT---TAT-TT--CTTTT-GAAGACCATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTA---C-A-GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
finalCons : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGTATTAGATTTTTAA------------AAA-AATGAG--ANT-GGC-CGCGGC---CGGG-TGCCAGA-ACG-AAACACGCATAAATTT-----AT-TT--CTTTT-GAAGAT-ATCTATCTCT-AGT----TTG-ATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATCG--AATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGC-T-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTACGA----GAGACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTATG--ATAAC-AA--ACGTACCTAG
Alignments
lowQualScore : 1 1 1 1111 444444444444444444444444444 111 11111111 111111111111 1111 1111 1 111 1111 111111 11111
lowQualScore : 0 0 0 0 3 4444 99 99 1 6 6 77 5 444444444444444444444444444 0 5 000 1 5 5 2 55555555 0 4 4 2 1 666666666666 55 1 6666 2 4 8888 88 4 4 888 3 88 0 55 6666 44 6 6 1 3 6 55 0 5 1 1 66 1 77 000 2222 0 666 1 222222 4 11111 1 88888 1 4 5 777777 7 0 3 1 888 4 55
lowQualScore : . . . . . .... .. .. . . . .. . ........................... . . ... . . . . ........ . . . . . ............ .. . .... . . .... .. . . ... . .. . .. .... .. . . . . . .. . . . . .. . .. ... .... . ... . ...... . ..... . ..... . . . ...... . . . . ... . ..
lowQualScore : 0 0 0 8 8 2222 22 22 0 7 7 99 7 888888888888888888888888888 4 0 222 0 0 0 5 55555555 5 4 4 1 6 999999999999 55 4 0000 4 0 5555 88 0 0 888 6 66 2 00 3333 66 2 2 2 1 7 55 7 0 0 1 99 1 99 000 1111 7 777 4 888888 4 11111 1 66666 9 4 4 777777 1 1 6 0 777 0 55
consensus : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT--ATT--AGATTTTTAA----AAAAATG-A-G-ANT-GGC-CGCGGC-C-G--G-GTGCCAGA-ACG-AAACACGCAT--AAATT---TATT--TCTTTTGAAGA-C--ATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGCT-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTACGAGA--GACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
Reference ( family-5704 ) : TTATCTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCCCACA-AA-CGTCAAA--AGCAGA-CGACTGGT--ATT--AGATTTTTAA----AAAAATG-A-G-ANT-GGC-CGCGGC-C-G--G-GTGCCAGA-ACG-AAACACGCAT--AAATT---TATT--TCTTTTGAAGA-T--ATCTATCTCT-AGT----TT-GATG-CTTTTT-GTGGTC-NNT-GCA--TGCGGCCAC--ATC--GAATTTTCTC--CTGAA-AGGT-GGAAAAGGTGAAGAAAAT-TGCT-CGTTTTCC--GGATTCCGGAT-AGGTTCGAANAGTACGCA--CCATTACGAGA--GACCTAGAT---CCGC----CGATATGCNT-GCATATATGGATACTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGGATGATC-ATT-CTTNATTTTTTAA-GTATTTTACAGGGCCTANTTAT--GATAAC-AA--ACGTACCTAG
gi|1 : TATCTCATTCTGCAC-CAGTTGCGGTCTCTCT-TCA-CTCAGC----GCTGTCGC--G--ATCCGCCTA-A-AA-TGTTCATTTAGCAGA-CGACCGAT--ATT------TTTTAA----AAAG-TG-A-GTAAT-GGG-CACG-C-C-G--GTGTGCCAGA-ACGTAAACATGCACTCAGATCCCCTGTT--TCTTTTTGAAA-CCCATC-ATCTTT-AGTGTACTT---TG-CTTTTTTGTGTTC-TTT-GCGGTTGTGCCCACCCATTTTAAATTTTCTC--CTGA----GT-GGAACAGTTGATGAAAAT-GTCTGCGTTTTTCCTGGATTCCGGATTAGGTTCGAAGAGTACGCATTCTATTAATACACGGACCTAGATACTCCTCTTCGCGATATGCCTTGCATATATACTT-CTTGGCATTTCAATCTTCACACTTTACCTCGCTCAAAT---C-CATGATTTGTA-TG-ATTATT-ATT-CTT-ATTTTTTAA-GTATTT-ACAGG-CCCATTTAT---AGAAC-AA--ACGTACCTAG
gi|10 : TGAA-AGAT-GGAAAAAGTGGAGAAAAT-TGCC-CATTTTCC--GGAT--------GGGTTCGAAGATTACGCA--CCATTACATGA--TACCTAGAT---CCTC----ATATATGCTT-GCATATATGGATACTTGG------GATCATCA-ACTTC-----ATGAAAAT---C-CATGATTTGTA-TTGATGAAT-ATT-CTTTATTTTTTAA-GTATTTTACAGCGCCCATTTAT--GATAAC-AA--ACGTACCTc
gi|11 : AA--AGCAGAACAACTGGTGAATT--AGATATTTAA----AAAAATGAA-G-ATT-AGCGCGCAGCAA-A--A-GAGCCAGA-ACG-AAG-ACGCA---AAATTG--TATT--TGTTTTGAAGA-T-----------T-AGT----TT-------TTTTT-TTGATC-GAT-GCA--TTTGACCAC--A-A--GCATTT--TC--CCGAA-AGGC-------GGTTAGGAAAATGTGCT-CGTTTT
gi|12 : aagc-ACG-AAACACCCAT--AATTG---TATT--TATTTTGAAGA-T--ATCTATCCCT-GGT----TT-GGTG-CTTTTT-GTGGTT-CAT-ACA--TGTGGTAAC--ATT--AAACTTTCTC--CTGAA-ATGT-GGAAAAGGCGAAGACAAC-TGCT-CGTATTCC--AGATTC
gi|13 : ATACTTGG------GGTCATGA-ACTTC-----GTGTATACATACACACAATTTGTA-TGGATGATC----------------AA-GTAGTTTACAAAGTGTATTTTT--AATAAC-TA--ACGTatg
gi|14 : GGATACTTGG------TGTCATCA-ACGTT-----GTGTATAC---A-CATTATTTGTA-TGGATAATC----------------AA-GTATTTAACAGAGTATAGTTAT--GAGAAC-AA--ACGTA
gi|15 : TT-CTTCATTTTTGAA-GTATTTTAAATGGCCTTGTTAT--GATAAC-AAGCGCGTACCTAG
gi|16 : TT-TCTAATTTTTAAAAGTATTTTACAGGGCCCATTTAT--GATAA--AA--ACGTACct
gi|17 : C--CTGAA-ATGT-GGAAAAGGCGAAGAAAAC-TGCT-CGTATTCC--GGATTCta
gi|2 : TTATCTCATTCCGAAC-CAGC-ACG-TCTCTCTGTCATCTCGGC----GCCATCGC--G--ATCCGCC-ACA-AA-TGTCAAT--AGCAGA-CGAC-AAT--TTT--AAA-----AA----AAAAATG-A-G-AAT-GGC-CACGGC-CCG--G-GTGCCAGA-ACG-AAACATGCAT--AGATC----ATT--TCTTTTGAAAA-CC-ATCTATCTCT-AGT----TT-ATTG-CTTTTT-GTGGTC-TTTTGCG--TGTGCCCAC--ATT--TAATTTTCTC--CTGAA-AGGT-GAAAAAAGTTGAGAAAAT-TGCC-CGTTTTCC--GGATTCTGGAT-AGGTTCGAAGAGTACGCA--CCTTTACATAA--GACCTAGAT---CCGC----CGATATGCTT-GCATATATGGATACTCGA------GATCATCA-ACTTT-----ATGAAAAT---C-CATGATTTGTA-TTGATAATT-ATT-CTTTATTTTTTAA-GTATTTTACAGGGCCCATTTAT--TATAAC-AA--ACGTACCTAG
gi|3 : GTCATATCGTCATTTGTCATCGC--GCGATCTTCCCGCAGAA-CATCAAA--AGCAGA-CGACTGGTC-ATTTTAGATTTTTTTTTTTAAAATTG-A---ATT-G-C-CGCAGC-C-ATCG-GACCCAGATACG-AAACATGCAT--AAATT---TAAT--TCTTTTGAAGA-TT-ATCTATCTCT-AGT----TTTGATA-CCTATT-TTG-TC-GAT-GCAC-TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGCTTCCTTTTCC--GGATTACGGAT-AGGTTCGAATAGTA-ACA--CCATTAT-AGA--GACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CAC-ATTTGTA-TGGAT-ATC-ATG-TTTAATTTTTTAA-GTAATTTACAGGGCCTAAATAT--T-CAACAAA--ACGTACC
gi|4 : cTTCTAA----AACAATG-A-A-ATT-GGT-CACG-----------TGCCAGA-AAG-AAACAAGCAT--AAATT---TATT--TCTTTTGAAGA-T--ACCTATCTCT-AGA----TT-GATGGCTTTTT-GTGGT------GCA--TGC--------AT---AAATTGCATC--CTGAA-AGGT-GGAAAAGGGGGAGAAAAT-TGCT-CGTTTGTC--GGATTCCGGAT-AGGCTCTAACAGTATTCA--C-ATTGCCAGA--GGTTTAGAT---TCGT----CGATATGTGT-GCA----------CTTGG------GATCATCA-ACTTT-----GTGTATAT---C-CACGATTTGTA-TGCACAACC-ATT-GTTGAATATTTAA-GTATTTTACAGAGCCTAGTTGT--GATAAC-AA--ACGTACc
gi|5 : ATACCCA---AAATT---TATA--TTTTTTTAA-A-C--ATCTATA-CT-AGT----TT-GATG-TTTTTT-GTGGTC-CAT-GCA--TGTGGCCAC--ATC--GAATTTTCTATACTAAA-AGGT-GGAAAAAGTGAAGAAAAT-TACT-CATTTTCC--GGATTTCGGCT-AGGTTCGAAGAGTACATA--CCATTACAAGA--GACCTAGAT---CTGC----C---ATAC-------------ATACTTGG------GATC-------------------ATAT---C-CATGATTTATG-TGGATAATC-ATC-GTTAAATTCTTAA-G
gi|6 : ttcttttttaaaacactgtagccgcttttaaatcagctactaagtt----GTCATCGCATG--ACCTGCCCGCA-AAACATCAAA--AGCAGA-CGACTGGTG-ATT--AGATTTTT-A----AAAAATG-A-A-ATT-GGC-CGCAGA-C-A--T-CGACCAGA-ACG-AAACATGTTT--TAATT---TATTTATTTTTTGAAGA-T--ATCTATCTCT-AAT----TT-GATA-CTTTTT--TGGTC-GAT-GCA--TGCGACCAC--ATC--AAATTATCTC--CTAAC-AAGT-GTCAAAAAT---GAAAAT-TGCT-CGTTTCCC--GGATTTCGGAT-AGGTTCTAATAGTACACA--CCATTACgta
gi|7 : -GCA--TGCGGCCAC--ATC---AATTTTTTT--ACAAATAGGT-GTAAAAGATGAAGAAAAT-TGCT-CGTTTTCC--GGATTACGGAT-AGGTTCGAATAGTACACA--CCATTATGAGA--GACCTAGAT---CCGC----CGATATGCAT-GCATATATGGATACTTGC------GATCATCA-ACTTT-----GTATATAT---T-CACAATTTGTATTGGATGATCAATTGTTTAATTTTTTAA-GTAATTTACAGGGCCTAAATATTCAACAA--AA--ACGTACCta
gi|8 : TTATCTCATTCTGCACACAGT-ACG-TCTCTCTGTCATC-CGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG----------------TTTT--A----ATAAATG-ACG-AATGGGC-AACGGC-C-G--G-GTGCCAGA-ACG-AAACATG--------------------CTTTTGAAAA-C--CACCATCTCTAAAT----TT-AATG-ATTTTT-GTGGTCTTTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTG-AGAAAAT-TTCT-ctaa
gi|9 : CTCATTCTGCAC-CAGT-ACG-TCTCTCTGTCATCCCGGT----GCCATCGT--G--ATCCGCCCACA-AA-CGTCAAA--AACAGA-TG----------------TTTTT-A----ATAAATG-A-G-AAT-GGG-CACGGC-C-G--G-GTGCCAGA-ACG-AAACATG--------------------CTTTTGAAAACC--ACCAATCTCT-AAT----TT-AATG-ATTTTT-GTGGTC-TTT-GCT--TGTGGCCAC--ATT--GAATTTTCTC--CTGAA-AGATGGGAAAAAGTGGAGAAAAT-Taatt