lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111 44444444444444444444444444
lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 33 1 3333333333 2 1 1 1 111111 11 1 22222 1 1 444444444444444444444444444444444444444444444444444444444444444444444444444 555555 4 55555 22 1 1 333333 2222 44444444 777777777777777 11 111111111111111 22 1 11 1 5555 1 222 1 33 1 2222 1 6666666666 11 2 1 2 11111111111111111111111111 333 33 1 1 6666666666 111 222 222222 11111111 222222222222 222 1 11 11111 1
lowQualScore : 3 3 4 2 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 6 22 4 5 88 3 2 6 5 0000000000 0 0 0 0 2 2 0 0 0 2 2 99 999999 8 00 6 5 3 4 00000 7 2 9 999999999999999999999999999999999999999999999999999999999999999999999999999 333333 4 0 6 6 00000 77 5 5 4 4 666666 2222 2 99999999 4 4 444444444444444 22 4 2 222222222222222 2 44 3 88 3 1111 3 777 7 7 00 3 0 8888 3 6666666666 11 0 3 3 6 55555555555555555555555555 4 555 2 00 7 5 1111111111 5 000 555 222222 5 0 5 6 44444444 44 66 888888888888 111 5 7 1 33 5 00000 7 3
lowQualScore : . . . . ..................................................................................... .. . .. . . .. . . . . .......... . . . . . . . . . . . .. ...... . .. . . . . ..... . . . ........................................................................... ...... . . . . ..... .. . . . . ...... .... . ........ . . ............... .. . . ............... . .. . .. . .... . ... . . .. . . .... . .......... .. . . . . .......................... . ... . .. . . .......... . ... ... ...... . . . . ........ .. .. ............ ... . . . .. . ..... . .
lowQualScore : 0 0 0 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333 00 7 88 2 5 55 2 0 0 0 8888888888 8 2 0 2 5 2 0 0 5 5 2 22 222222 0 22 7 3 2 6 00000 3 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000 000000 0 0 0 0 00000 55 5 0 0 0 555555 0000 5 55555555 0 0 555555555555555 00 0 5 000000000000000 5 00 3 33 3 7777 3 777 3 0 77 3 7 3333 3 7777777777 77 7 3 3 7 00000000000000000000000000 0 000 5 00 0 0 5555555555 7 000 111 666666 7 1 7 6 33333333 77 44 777777777777 444 7 1 4 66 7 99999 1 2
consensus : TTTTGGGAAAGGTTATTTGGTCNGGGNTATTCCATTTGANTTCCCCNACAGGGGAGGGGGGGGGCGCCGAT---TGATTTTTTT---T-TTTC---GGTT-GGAGG-AAT--T-CGGTGTAA-TA-TAC--TG-GTGGGGGGTGTTACCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTGAATTATAAAATTTGTAAAACCTGT------GT-NCTCGCTCATTTTTCGCCGTGTAAAGTGCC-ACTCCACTTTT-TTTTTTACTCNAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTT--TGGTATTTGCAAT------TACCGTTAATTTGCCGATTATAATACG-CAC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTAC-----ATATTATATACCACNACAGGTTCTGACCAC---CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCGGAGGCTCT---TTTTACGTTTTTCACCTNTCGTGAATAANAGTGAAAAATCTATCTCAAGAAACGAAAAGTTGTCTGCGAGGATAAATGTGATACTTACANTATGTAANTAGATNAAATTATTTATGAAAANANCCAATTCTTTCTTNAATNTGGATATGCTCANCACTATCACGGCATCACCACGCANGCTGCATNTTTAAAAGGCATAGGNACNCTANAAAAG-CCTTTTCA--CGTG-CTAAA-CA-ACAA-AGCTATGGGTTAGAAAATAA--TTTGCCGCTAGAAAGTTAGTT-TATT----GTAA-GG-TT--G----AGAATATNNTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TGATNCAACTTTTCTTCTTGNGCAGCCGGTGACCAGCACGTTTTTGTTTGTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTTGCCATGAANCTGAATTTGTC-CT---GGATTTGTTAAATA---CCCCCCAG-----NG-TAAA-TACTT--TTTAATATACATG-TA----TATGTAT-TGAGAG--GAAA-ATAA-CCATG--C-AGAATG-TC-CGAGACCT-CATGTACATACGGTG
Reference ( gi|1 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG---GAGGTGGCGC-GAT---TGATTTTTTTAAAT-TTTT---GGTT-GGAG--AATATTGTGGTGTAAGTAATACA-TGCGTGAGGGGTGTTACCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTAT------AT-CCTCGCACATTTTTCGCCGTGTAAAGTGTC-ACTCCACTTTT-TTTTCTACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTT--TGGTATTTGCAAT------TACCATTAATTTGCCGATTATAATACA-CAC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTAC-----ATATCATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCTAAATCTTACTTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAA-AAACTTATT-AT-AAAACAG-CAAT--TTTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAG-CCTTTTCA--CGTG-CTAAA----ACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GG-TTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNTGATACAACTT---TTCTTGGGCAGCCGGTGAAAAGCACGTTTATGTTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCTGACC-----CTTGAATTTGTC-CT---GGATTTGTTAAATAG--CCCCTCAG-----TG-TAAA-TACTT--TTTAATATACATG-TA----CATGTATTTGAGA---GAAA-ATAA-CCATG--C-AGAATG-TT-TGAGACCT-CATGTACATACGGTG
gi|5 : TTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGGGGCGCCGAT----GATTTTTTT---TCTTTT---GGTTTGGAGGGAATAGTTCGGTGTA--TA-TAC--TG-GT-AGGGGT-TTACCAGATATTTT-----------------TGGAAT-AAATTATAAAGTTTGTAAAACCTAT------ATTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTT--TGGTATTTGCAAA------TACCATTAATTTACCGATTATAATACA-CAC-TTTT-TTTTCAAGAGTTGTTTGGTATAAGAAGGAAGTAC-----
gi|2 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaGTCAGGGCTATTCCATTTAAATTTCCCAAC--------------GC-C-GATAACT-ATTTTTCTA----TCTA---GGGT-GG------------GGGGAAAATA-TAC--TG-GTGGGAGGTGTTACCAGATATTTTT-TCCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGT------GT-ACGTGCTCATTTTTTGCCGTGTAAAGTGCC-ACTCCACTTTT-TTTTTTACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTT--TGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATAT-ATATACCTCCACAGGTTCTGACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTTTTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGA-TAAATTATT-AT-AAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAG-AATTTTCA--CGTG-CTAAA----ACAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA------AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------TGATTCAACTT---TTTTTGTGCAGCCGGTGACCAGCACGTTTTTGTTTGTAAACGAATCC
gi|8 : tcgtctttaaaact---TGATTTTTTT---T-TTTCTAGGGTG-GGAGG-AATCTTGTGGTGTAA--AATATACTG-GTG-GGGGTGTTACCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTAT-CCCCAC-CAATTTTCGCCATGTAAAGTGCC-ACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTT--TGGTATTTGCAAT------TACCATTAATTTGCCGATTATAATACA-CAC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTAC-----ATattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|6 : gaACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTT------GT-ACTCTCTAATTTTTGGC-ATGTAAAGTGCC-ACCCCACTTTT-TTTTTTACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTT--TAGTATTTGCAAT------TACTGTTAATTTGCCGATTAAAATACG-CAC----------------TTGTTTGGTATGAGAAGGGGGTAC-----GTATTACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCGGAGGCTCT---T---------TTCACCTG-----AATAAAAGTGAAAAATCTATCTCA
gi|5 : tagggtggggggaaacttgtggattaaaaCGGTAAATTAATGGTATTTGCAAA------TACCA--AACTTGCCG
gi|17 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagattttgggaaaggttatttggttcgggatattccatttgatttcccccacaggggagggggggggcgccgatgattttttttcttttggtttggagggaatagttcggtgtatatactggtaggggtttaccagatatttttggaataaattataaagtttgtaaaacctatattcctcgcgcatttttcgccgtgtaaagtgtccactccactttttttttctactccaatggcactaacttccgatgtggaggttcaatatgaaacaagaAGTT--CAGTATTTTCAAT------TAGCGTTAATTTGCCGATTGTAATACG-CACTTTTT-TTTTAAAGattataatacacacttttttttcaagagttgtttggtataagaaggaagtac
gi|16 : C-TCTT-GTTCAA-GAATTTTTTGGCATAAGAAAGGGATGC-----ACATTATATATCACGATATGTTATGAC
gi|3 : AAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAA--TATTTATGAAAAGAC-CA----TTTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCT-TAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTATG--TTAGAAAATAA--TTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GG-T---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC
gi|10 : AAAAG-CCATCTCAATCGTGACTAAATCA-ACAATAGCGCTAGGT-AGAAAATAA--TTTACCACTAGGAAAGTAGTTGTATT----GTAAAGG-TTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTCtgaaacaacttctttcttggctcggtttttgttttacgaattccatgcattgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgttgtgttacgctgcgcttgccatgaacttgaatttgtcttggatttgttaaacacctctcaagagaatatttttatttttattatatgtgagaggaaaataattcatgtatagattgtcaagagacctc
gi|4 : tgccatttaagcatggtcacctaGATACAACTTTTCTTCTTGGGCAGCCAGtaaatacaacaatctttggctggcgtgatggcccaaggtttttttttacgaatcccattagagagacgag
gi|3 : taaagttaatgtcaaactcgGCGCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CCTCTCAA------G-AGAA-TATTT--TT--ATTTTTAT--TA----TATG----TGAGAG--GAAA-ATAATTCATGTAT-AGATTG-TCAAGAGACCT-Cgtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|12 : aaaagttgtctgcgaggataaatgtgtattacaatatgtaattaaataaatatttatgaaaagaccatttcttaaatttgaatatgaatactatcacggcatcaccacacatactgcatttttaaaaggcatagatacccttagaaggcctcttcatgtgctaaagtaaacaaagctatgttagaaaataatttgccgctagaaagttagcctattattagtgaggtaagaatatactttaaggaaaataattgttaaaactctgaaacaacttctttcttggctcggtttttgttttacgaattccatgcattgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgttgtgttacgctGCGCTTGTC-----ACTGAATTTGTCGCTCCAGGATTTGTTAAATA---CTCCCAAG-----GG-T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTGTGAAAGT---GAAA-A-AA-TAGTG--C-AAAATG-CG-CGAGACCT-
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CCCCTCAG-----TG-TAAA-TACTT--TTTAATATACATG-TA----CATGTATTTGAGA---GAAA-ATAA-CCATG--C-AGAATG-TT-TGAGACCT-CATGTACATACGacaag
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCCCCTCAG-----TG-TAAAATACTT--T--AATATACATG-TA----CATGTATTTGAGAG--GGAA-ATAA-CCATG--CAAGAATG-TT-TGAGACATCCATGT--ATACGGTG
gi|4 : TTTGTC-CT---GGATTTGTTAAATAC--CCACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGTA----AAG---GTGA-ACAT-CCATGC-C-AGAATGCCT-CCAGACCA-CATGCAcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
gi|15 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTC-CT---GGATTTGTTAAATA---CCCCCAAG-----GG-TA------TT--GCTAA-ATACATT-TATTATTATGTG--TGAAAGGTGAAA-A-AA-TCATG--C-AGAATG-TC-CGAGACCTACATgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|2 : C-TT---GAATTTGTCAAATAG--CCCTTCAG-----GG-TAAA-TACTT--TTTATTAT--ATG---------------TGAGA---GGAACATAATCCAAG--C-AGAATG-TC-CGAGACCTACATGTACATGCGGTG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): AAATACCACCTCAGGGTATTTCATTATATGTGAGGAGGGAAAACCACGCAAAATGTCCGAGATTTGCATGCGGTGCCTTGACTTCCACGAAGCGACTGACGCAAGTTATATCCGGGGTTATACCCATCTTCTTGCAACAAAAATTTCAGAGGATGGTTGCAT
Unaligned ( gi|14 ): TCGTATTTAAAAACTGTCAGGGCTATTCCATAAGCATTAAACGTCAAGGATTTTTTTTTCTCTTGGGTGGGGGGGGGGCTTAATATGTGGTGTAAAATATACTGGTGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 1 3333333333333 11 5555555555555555555555 1 1 333333333333 1111 11 222222 1 111111 111 1 3333 222 33333333333 44444 5555555555 22 1 2 2 33333333 777777777777777 8888888888888888888888 11 1 4444 1 11 22 1 2222 1 4444444444 1 8888888888888888888888888888 333 33333333333333333 11 2222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555 222 111111 1111111111111111 1111 3333 111 11 1
lowQualScore : 11 1 1 1 4444444444444 6 5 8888888888888 33 8888888888888888888888 0 0 8 888888888888 7777 11 1 3 0 1 333333 1 8 0 8 0 8 1 999999 6 77 5 6 444 0 1 0 3333 333 55555555555 11111 1 7 0 2222222222 7 6 1 1 0 11 5 3 3 1 00000000 0 1 1 555555555555555 11 1 0000000000000000000000 33 0 8888 0 99 3 77 2 0 1111 0 8888888888 22 5 8 0 0 6666666666666666666666666666 1 0 888 8 6 77777777777777777 11 2222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 000000 5 888 111 4 4 0 4 1 222222 1 4 5 6666666666666666 3333 8888 4 111 9 8 00 4 8 3 1
lowQualScore : .. . . . ............. . . ............. .. ...................... . . . ............ .... .. . . . . ...... . . . . . . . ...... . .. . . ... . . . .... ... ........... ..... . . . .......... . . . . . .. . . . . ........ . . . ............... .. . ...................... .. . .... . .. . .. . . .... . .......... .. . . . . ............................ . . ... . . ................. .. .... ..................................................................................................... ...... . ... ... . . . . . ...... . . . ................ .... .... . ... . . .. . . . .
lowQualScore : 77 0 0 0 7777777777777 7 5 2222222222222 00 8888888888888888888888 0 0 0 000000000000 0000 66 4 2 8 4 000000 0 0 8 0 8 0 0 222222 7 44 7 7 000 0 0 2 7777 333 77777777777 77777 0 3 7 0000000000 3 7 0 0 7 33 3 7 3 0 00000000 7 0 0 333333333333333 77 0 2222222222222222222222 88 0 0000 0 88 2 55 0 0 2222 0 8888888888 00 0 0 6 8 8888888888888888888888888888 0 8 888 8 0 66666666666666666 00 6666 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 0 888 111 4 4 7 4 0 888888 9 4 7 8888888888888888 9999 3333 4 777 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG---GGGG-GGCGCCGATTGATTTTTTT---T-TT-TCTAGGGTN-GGAGGA-A----TT-C---GGTGTAAG-TA-TAC-TG-GTGGGGGG-------TG--TTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTTTTCACCTT---TGAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGG--AAATGTGATACTTACAATATGTAAATAAATAAA-TTA-TTAT-AAAACAGCCAAT--TTTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTATGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GG-TT-A----AAGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T-TTCTTGGGCAGCC-GGTGA----CCAGCANGTTTTTG--TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTTACGCNGCGCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTC-AGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--TGAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTCNGGGNTATTCCATTTGANTTCCCCNACAGGGGAGGGGGGGGGCGCCGATTGATTTTTTT---T-TT-TC---GGTT-GGAGGA-A----TT-C---GGTGTAA--TA-TAC-TG-GTGGGGGG-------TG--TTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTGAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCTCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCNAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACA---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TTTTACGTTTTTCACCTNTCGTGAATAANAGTGAAAAATCTATCTCAAGAAACGAAAAGTTGTCTGCGAGGATAAATGTGATACTTACANTATGTAANTAGATNAAATTATTTATGAAAANANCCAATTCTTTCTTNAATNTGGATATGCTCANCACTATCACGGCATCACCACGCANGCTGCATNTTTAAAAGGCATAGGNACNCTANAAAAGCCTTTTCA--CGTG-CTAAA--CAACAA-AGCTATGGGTTAGAAA--ATAATTTGCCGCTAGAAAGTTAGTT-TATT----GTAA-GG-TT------GAGAATATNNTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------T-GATNCAACTTTTCTTCTTGNGCAGCC-GGTGA----CCAGCACGTTTTTG--TTTGTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTTGCCATGAANCTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CCC-AGNG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA-TTGAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG---GAGGTGGCGC-GATTGATTTTTTTAAAT-TT-TT---GGTT-GGAGAATA----TTGT---GGTGTAAG-TAATACATGCGTGAGGGG-------TG--TTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTACTTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGG--AAATGTGATACTTACAATATGTAAATAAA-AAACTTA-TTAT-AAAACAG-CAAT--TTTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CTAA----AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GG-TTAA----GAGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAACTT---TTCTTGGGCAGCC-GGTGA----AAAGCACGTTTATG--TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTC-AGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTTGAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTA-AAAAGCCATCTCAATCGTGACTAAAT-CAACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGG-TTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAAC----AATCTTTGGCTGGC--GTGATGGCCCA--AGGTTTTTT--TTT----ACGAATCC
gi|11 : tgccaAAATA---CCAC-CTC-AGGG------TA----------TTT------CAT--TA----TATGT----GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGcattagagagacgag
gi|12 : GCGCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCA-AGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--TGAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTC-AGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTTGAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|15 : TC-CT---GGATTTGTTAAATA---CC-C-CCA-AGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--TGAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC----------------GCCGAT-AACTATTTT---T-CTATCTAGGGTG-GGGGGA-A----------------AA--TA-TAC-TG-GTGGGAGG-------TG--TTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTTTTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGG--AAATGTGATACTTACATTATATAAATAGAT-AAATTA-TTAT-AAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAA----AACAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTT------AAGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT---TTTTTGTGCAGCC-GGTGA----CCAGCACGTTTTTG--TTTGTAAACGAATCCttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTC-AGGG------TAAA-TACTT--TTT-AT--------TA----TATG----TGAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAA--TATTTATGAAAAGA-CCA----TTTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTAT--GTTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GG--T------AAGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT-TTCTTG-GC--TC-G---------------GTTTTTG--TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTTACGCTGCGCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGAG--------AA-TATTT--TT--ATTTTTAT--TA----TATG----TGAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTTTTCTTCTTGGGCAGCCAGGTCG----TTACAAAGTTTTTGATTTTATA
gi|4 : tTTTGTC-CT---GGATTTGTTAAATA---CC-CACCC-AGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-----AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGGGGCGCCGAT-GATTTTTTT---TCTT-TT---GGTTTGGAGGG-AATAGTT-C---GGTGTA---TA-TAC-TG-GTAGGGG--------T---TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaG-GTGGGGGGAAACTTGTGGATTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TTTTCACC-----TGAATAAAAGTGAAAAATCTATCTCA
gi|7 : tagATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTC-AGTG------TAAAATACTT--T--AATATACATG-TA----CATGTATTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---T-TT-TCTAGGGTG-GGAGGA-A----TC-TTGTGGTGTAAAATA-TAC-TG-GTGGGGG--------TG--TTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): TCGTATTTAAAAACTGTCAGGGCTATTCCATAAGCATTAAACGTCAAGGATTTTTTTTTCTCTTGGGTGGGGGGGGGGCTTAATATGTGGTGTAAAATATACTGGTGG
Alignments
lowQualScore : 44444444444444 1 111 11 777777777777777777777 11111 333333333333 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 333 1 33 1 2222 1 333333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 1111 2222222 11 1
lowQualScore : 11111111111111 6 5 444 8 11 1 999999999999999999999 77777 8 8 6 888888888888 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 6 7 88 333 3333333 333333333333333 8 9 7 33 0 3 111 3 0 999 3 55 0 1111 0 666666666 11 5 8 0 0 6666666666666666666666666666 222222 0 3 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 22222222 1 0 333333 4 777 999 111111 777 4 888888 44 0 6 4 3333 7777777 4 55 66 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . .. . ..................... ..... . . . ............ .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . .. ... ....... ............... . . . .. . . ... . . ... . .. . .... . ......... .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . . ...... . ... ... ...... ... . ...... .. . . . .... ....... . .. .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 66 0 000000000000000000000 22222 0 0 7 000000000000 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 2 222 2 0 888 2 55 0 2222 0 555555555 88 0 0 6 8 8888888888888888888888888888 222222 0 8 222 2 88888 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 00000000 0 0 555555 4 888 666 555555 000 1 333333 11 1 7 4 9999 1111111 4 66 11 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------A----TT-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGG-------TG--TTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C-AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTT-----NA-AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGT-NAC----GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CCCCTCAGGG------TAAA-TACTT--TTTAATATACATGT-AT----ATGTA--T--GAG-AG-G--AAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTNGGAGGA---------A----TT-C---GGTGT-AAG-TA-TAC-TG-GTGGGGGG-------TG--TTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACAGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTATGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTT-----AA-AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCAGC-C-GGTGACCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGT-TAC----GCNGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATAG--CCCCTCAGGG------TAAA-TACTT--TTTAATATACATGT-AT----ATGTA--T--GAG-AG-G--AAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------A----TTGT---GGTGT-AAG-TAATACATGCGTGAGGGG-------TG--TTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CT-AA---AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTT-----AAGAGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN----NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CCCCTCAGTG------TAAA-TACTT--TTTAATATACATGT-AC----ATGTATTT--GAG-A--G--AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC-AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGA-AGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATAC--CACCTCAGGG------TA----------TTT------CAT-T-AT----ATGT------GAGGAG-G--GAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CTCCCAAGGG------TAA--TA-TT--ACTAA-ATACTTGTTATT---ATGTG--T--GAA-AGTG--AAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CCCCTCAGTG------TAAA-TACTT--TTTAATATACATGT-AC----ATGTATTT--GAG-A--G--AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATA----TG-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CCCCCAAGGG------TA------TT--GCTAA-ATACATTT-ATTATTATGTG--T--GAA-AG-GTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A------------------AA-TA-TAC-TG-GTGGGAGG-------TG--TTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA---A-CAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCT-----TA-AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CCCTTCAGGG------TAAA-TACTT--TTT-AT-------T-AT----ATG----T--GAG-AG-G--AACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT-------A-AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGT-TAC----GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CCTCTCAAGA-------GAA-TATTT--TT--ATTTTTAT-T-AT----ATG----T--GAG-AG-G--AAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA--------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATAC--CCACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---GT-AT----GTGT-------AA-AG-G--TGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTT-GGTTTGGAGGG---------AATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG--------T---TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaG-GTGGGGGGAAACTTGTGGATTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : tagATTT-TC-CC---GGATTTGGTAAATAAGCCCCCTCAGTG------TAAAATACTT--T--AATATACATGT-AC----ATGTA--TTTGAG-AG-G--GAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------A----TC-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG--------TG--TTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 4444 1 22 33 1 2222 1 33333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 2222 0 33 3 55 0 1111 0 77 55555 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . .... . .. . .. . .... . .. ..... .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 0 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 0000 0 22 2 55 0 2222 0 88 00000 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTATGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA--CAACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTNA-----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CTAA----AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAAT-CAACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA----ACAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTAT--GTTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT--A-----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 333 1 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 3 111 3 0 999 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . . ... . . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 2 222 2 0 888 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C-AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTATGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CT-AA---AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC-AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA---A-CAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 44444 1 111 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 22222 0 333 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . ..... . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 00000 0 222 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA----AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C--AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CTAA-----AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC--AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA-----ACAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAA-GTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 333 1 111 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 3 111 3 0 333 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . . ... . . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 2 222 2 0 222 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C-AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CT-AA---AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC-AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA---A-CAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 44444 1 111 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 22222 0 333 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . ..... . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 00000 0 222 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA----AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C--AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CTAA-----AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC--AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA-----ACAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAA-GTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 333 1 111 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 3 111 3 0 333 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . . ... . . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 2 222 2 0 222 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C-AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CT-AA---AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC-AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA---A-CAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 777777777777777777777777777777 111 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 44444 1 111 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11 1111 2222222 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 888888888888888888888888888888 6 6 6 3 555 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 22222 0 333 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 888888 44 0 11 3333 7777777 4 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . .............................. . . . . ... .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . ..... . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . ...... .. . .. .... ....... . .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777 7 7 7 2 888 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 00000 0 222 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 333333 11 1 11 9999 1111111 4 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA----AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C--AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGAAT--------AT---TGT---GGTGT-AAG-TAATACATGCGTGAGGGGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CTAA-----AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAG-A---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC--AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGT------GAGGAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAA-AGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAG-AG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTAATAT---G-T---GGTGTAAAA-TA-TAC-TG-GTGG
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAA-AGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGGA---------A-----------------AA-TA-TAC-TG-GTGGGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA-----ACAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTT-AT--------TA----TATG----T--GAG-AG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAA-GTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--TA----TATG----T--GAG-AG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AA-AG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGGA---------ATAGTT-C---GGTGT-A---TA-TAC-TG-GTAGGGG-T-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGGA---------A------------------------AC-TT-GTGGA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAG-AG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGGA---------AT---C-TTGTGGTGT-AAAATA-TAC-TG-GTGGGGG-TGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
blockSeqs : AGGGGAGGGGGGG C T . A T GGGCTTAATATGTGGTGTAAAA . . . A GTG AAAA TT A G G AGTGTA A C T T C ATGTAC C TT A . AAT A G C NNN TTTTTACG . TTTCGT A CTGCG TA A C C A CT CTC TATCACG TTAAAAGGCATAGAT G A A AT A AGTA T TAG T AT G ATTA A TTAGCTGA TG G T A TA TTTTC C G GT A ACCAG A A GTAA C G NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN AGACAACT T TGAACT G CCA AGC A A TATTGC A C ACTTT TA GT TTAT TATTT G GT T T TA A A A G
blockSeqs : . C . . . A ATCTTGTGGTGTAAAA . . . G TG . TT A G A . T . G . . . . T . . . . C . . . . T A . . . . C . . . . TTAAGCATGGTC C A G . . ATC . TG T . . . . TTA CT G . A T TTCT C A CA G GTTAC C . T C . TAC . C . . G . . . . C ACTA TT G T TATTT . T T T C . T A A
blockSeqs : . . . G ATAGTTCGGTGTA . . . G T . T G A T . A . T . . . . T . . . . T GA . T . . . A . G . . . . . A AC G . A T AAT . A C G GCC A . T . . T . . G . . . . T TTTA TA T . TGT . . T . . . . C A
blockSeqs : . . A AAA . . . . . . . . . G . C . . . . . . T . . . . . . G TTT . . C . . . . . . . . . . . C GCTA TA G . TGT . . C . . . . . A
blockSeqs : A A . . . . . A . . . . . . . . . A TCTA TA G . T . . T . . . . . .
blockSeqs : . . . . . . . . . C TTT A . . T . . . . . . . .
blockSeqs : . . . . . . . . TTT A . . T . . . . . . . .
blockSeqs : . . . . . . . . TT T . . T . . . . . . . .
blockSeqs : . . . . . . TA .
blockSeqCons : *** ATCGGTGTAA******************** T** T*************************** TTT*** C** *** TGT****
originalCons : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGA---------AT---T-T---GGTGT-AAA-TA-TAC-TG-GTGGGGGGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA----AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTA--T--GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
finalCons : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGGAATCGGTGTAA--------------------TA-TAC-TG-GTGGGGGT--TTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA----AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTCT---------------------------GATACAACTTT---TTCTTGGGCGGCC--GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTGT----GAG-AG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 44444444444444 1 111 888888888888888888888888888888888 2 1111 11 222222 111111 111 1 3333 222 44444444444 1 333333 33333 11 11 222 4444444 666666666666666 11 1 333 1 111 33 1 2222 1 33333333 1 8888888888888888888888888888 111111 1 11111 2222 111 7777777777777777777777777777777777777777777777777777777777777777777777777 33333333 1 444444 111 111111 11111111 111111 11 11 1
lowQualScore : 11111111111111 6 5 444 8 1 666666666666666666666666666666666 6 6 6 6 8 4 7777 11 1 3 0 1 333333 1 8 8 8 0 8 999999 6 77 5 6 444 0 1 0 3333 333 22222222222 3 777777 7 33333 88 7 6 0 6 7 88 333 3333333 333333333333333 8 9 7 33 0 3 111 3 0 333 3 55 0 1111 0 11111111 11 5 8 0 0 6666666666666666666666666666 222222 0 9 999 3 88888 3 8 0000 666 2 3333333333333333333333333333333333333333333333333333333333333333333333333 00000000 0 333333 4 777 999 4 4 111111 0 4 4 55 0 444 2 77777777 555555 00 9 8 00 4 8 3 1
lowQualScore : .............. . . ... . . ................................. . . . . . . .... .. . . . . ...... . . . . . . ...... . .. . . ... . . . .... ... ........... . ...... . ..... .. . . . . . .. ... ....... ............... . . . .. . . ... . . ... . .. . .... . ........ .. . . . . ............................ ...... . . ... . ..... . . .... ... . ......................................................................... ........ . ...... . ... ... . . ...... . . . .. . ... . ........ ...... .. . . .. . . . .
lowQualScore : 00000000000000 7 5 000 0 8 777777777777777777777777777777777 7 7 7 7 0 0 0000 66 4 2 8 4 000000 0 0 8 0 8 0 222222 7 44 7 7 000 0 0 2 7777 333 00000000000 3 000000 3 33333 33 3 7 7 7 3 33 333 3333333 555555555555555 8 8 0 88 0 2 222 2 0 222 2 55 0 2222 0 55555555 88 0 0 6 8 8888888888888888888888888888 222222 0 6 222 2 44444 8 0 6666 222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 77777777 0 555555 4 888 000 0 0 555555 8 0 1 55 4 888 9 77777777 888888 66 0 9 66 4 9 3 7
consensus : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGG-------A-AT----C----G--GTGT--AA--TA-TAC-TG-GTG-GG-GGTGTTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA-C-AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTG--T--GAGAG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
Reference ( family-5672 ) : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GGGG-GGCGCCGATTGATTTTTTT---TTT-TCTAGGGTGGGGGG-------A-AT----C----G--GTGT--AA--TA-TAC-TG-GTG-GG-GGT-TTA----CCAGATATTTTTTTCCGTTGGTAGGGGGTGGAATTAAATTATAAAATTTGTAAAACCTGTG------TNC-TCGCNCATTTTTCGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CGTTAATTTGCCGATTATAATACGC-AC-TTTT-TTTC-AAGAATTGTTTGGTATGAGAAGGGGGTACG---TAT-TATATACCACNACAGGTTCTGACCA---CCTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTCT---TCTTAC-TTT-TTCACCTTT---GAATAAAAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAATAAATTATTATAAAACGGCCAATT--TTTTTAAATATGGATATG---AATAC-------GCATCACCACGCAAACTGCATGTTTAA---GCATGGGTACGCTAAAAAAGCCTTTTCA--CGTG-CTAAA---AACAA-AGCTACGGGTTAGAAA-TATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTTAG----AGAATATNTTTTAAGGAAAAGTTAA-TGTCAAAACTC--------------------------T-GATACAACTT-T--TTCTTGGGCGGC-C-GGTGGCCAGCANGTTTTTG-TTT-TAAACGAATCC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTN----AC-GCAGC-GCTTGCCAT----CTGAATTTGTC-CT---GGATTTGTTAAATA---CC-C-CTCAGGG------TAAA-TACTT--TTTAATATACATG-TA----TATGTG--T--GAGAG--GAAAATAA-CCATG--C-AGAATGTC-CGAGACCT-CATGTACATACGGTG
gi|1 : TTTTGGGAAAGGTTATTTGGTTAGGGATATTCCATTTGATTTCCCCCACAGGGG----GAGGTGGCGC-GATTGATTTTTTTAAATTT-TT---GGTTGGAGA-------ATAT----T----GTGGTGT--AAG-TAATACATGCGTGAGG-GGTGTTA----CCAGATATTTTCATCCGTTGTTAGGGGATGGAATTAAATTATAAAGTTTGTGAAACCTATA------TCC-TCGCACATTTTTCGCCGTGTAAAGTG-TCACTCCACTTTTTTTTC-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-TTTT-TTTCAAAGAGTTGTTTGGTATAAGAAGGGAGTACA---TAT-CATATACCACAACAGGTTTTGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GAGGCTCTAAATCTTAC-TTTGTTCACCTT-----AATAAAAGTG-AAAGTCTATCTCAAGAAACGAAGAATTGT-----AGGA--AATGTGATACTTACAATATGTAAATAAAAAACTTATTATAAAACAG-CAATT--TTTTTAAATATGGATATG---AATAC-------GCATCATTACGCAAACTGCATGT-------------GTACGTT-TAAAAGCCTTTTCA--CGTG-CT-AA---AACAA-AGCTACGGGTTAGAAATTAAAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGTTAAG----AGAATATATTTTAAGGAAAATTTAA-TGTC-AAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNT-GATACAAC-T-T--TTCTTGGGCAGC-C-GGTGAAAAGCACGTTTATG-TTTCTAAACGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NN-NNAGC-GCTGACCCT-----TGAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTATTT--GAGA---GAAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGGTG
gi|10 : TTTAA---GCATGGTCAC-CTAAAAA-GCCATCTCAATCGTGACTAAATC-AACAATAGCGCTAGGT-AGAAA--ATAATTTACCACTAGGAAAGTAGTTGTATT----GTAAAGGTTTAGCTGAAGAATATTGTTTAAGAAAAAGTTAA-TGTCAAAACTC--------------------------TAAATACAACAA-T--CT-TTGGCTGGCGT-GATGGCC--CAAGGTTTTT-TTT-T--ACGAATCC--CAT
gi|11 : tgccaAAATA---CCAC-CTCAGGG------TA----------TTT------CAT--TA----TATGTG--A--G-GAG--GGAAA--A-CCACG--C-AAAATGTC-CGAG------ATTTGCATGCGGTGtagagagacgag
gi|12 : GC-GCTTGTCA-----CTGAATTTGTCGCTCCAGGATTTGTTAAATA---CT-C-CCAAGGG------T-AA-TA-TT--ACTAA-ATACTTGTTAT---TATGTG--T--GAAAGT-GAAAA-AA-TAGTG--C-AAAATGCG-CGAGACCT-ccttgacttccacgaagcgactgacgcaagttatatccggggttatacccatcttcttgcaacaaaaatttcagaggatggttgcat
gi|13 : GAATTTGTC-CT---GGATTTGTTAAATAG--CC-C-CTCAGTG------TAAA-TACTT--TTTAATATACATG-TA----CATGTA--TTTGAGAG---AAAATAA-CCATG--C-AGAATGTT-TGAGACCT-CATGTACATACGacaag
gi|14 : GATTTTTTT---TTC-TCTTGGGTGGGGGGGGGGCTTA-ATATG-T----G--GTGTAAAA--TA-TAC-TG-GTG-G
gi|15 : tcgtatttaaaaactgtcagggctattccataagcattaaacgtcaagTC-CT---GGATTTGTTAAATA---CC-C-CCAAGGG------TA------TT--GCTAA-ATACATT-TATTATTATGTG--T--GAAAGGTGAAAA-AA-TCATG--C-AGAATGTC-CGAGACCTACAT
gi|16 : C-TCTT-GTTC-AAGAATTTTTTGGCATAAGAAAGGGATGCA---CAT-TATATATCACGATATGTTATGAC
gi|17 : AGTTCAGTATTTTCAATTAG------CGTTAATTTGCCGATTGTAATACGC-AC-TTTT-TTT
gi|2 : GTCAGGGCTATTCCATTTAAATTTCCCAAC-----------------GCCGAT-AACTATTTT---TCTATCTAGGGTGGGGGG-------A-A-------------------AA--TA-TAC-TG-GTG-GGAGGTGTTA----CCAGATATTTTTT-CCATTGGTAGGGGGTGGAATTGGATTATAAAATTTATAAAACCTGTG------TAC-GTGCTCATTTTTTGCCGTGTAAAGTG-CCACTCCACTTTTTTTTT-TACTCAAATGGCGCTACTTTCCGATGTGGAAGTTCAATATGAAATAAGGCGGCGAGTTTGGTATTTGCAATTACATGTACCGTTAATTTGCCGATTATGATATGCCAC-TTTTATTTC-AAGAATTGTTTAATATGAGAAGGGGGTACGAATTATATATATACCTCCACAGGTTCTGACCA---CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCTCT---TTTTACGTTT-TTCACCTTTCGTGAATAATAGTGAAAAATCTATCTCAAGAAACGAAAAATTGT-----AGGA--AATGTGATACTTACATTATATAAATAGATAAATTATTATAAAACAGCCAATTCTTTTTTTAATATGGATATACTCATCAC-------GCATCACCACGCAAGCTGCATGT-------------GAACGTTAAAAAAGAATTTTCA--CGTG-CTAAA---A-CAA-AGCTA--GGTTAGAAAATATAATTTGCCACTAGAAAGTTAGTT-TACT----GTAA-GGCTTA-----AGAATATCTTTGAAGAAAAAGTTAA-TGTC-AAACTC--------------------------T-GATTCAACTT-T--TT-TTGTGCAGC-C-GGTGACCAGCACGTTTTTG-TTTGTAAACGAATC-------CATTGAttaaag
gi|2 : tcgtctttaaaactC-TT---GAATTTGTCAAATAG--CC-C-TTCAGGG------TAAA-TACTT--TTTATTATA---------------TG--T--GAGAG--GAACATAATCCAAG--C-AGAATGTC-CGAGACCTACATGTACATGCGGTGgagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcacttgaatttgtcaaatagcccttcagggtaaatactttttattatatgtgagaggaacataatccaagcagaatgtccgagacctacatgtacatgcggtg
gi|3 : tcgtctttaaaactgtcagggctattccatttaaatttcccaacgccgataactatttttctatctagggtggggggaaaatatactggtgggaggtgttaccagatattttttccattggtagggggtggaattggattataaaatttataaaacctgtgtacgtgctcattttttgccgtgtaaagtgccactccacttttttttttactcaaatggcgctactttccgatgtggaagttcaatatgaaataaggcggcgagtttggtatttgcaattacatgtaccgttaatttgccgattatgatatgccacttttatttcaagaattgtttaatatgagaagggggtacgaattatatatatacctccacaggttctgaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggctctttttacgtttttcacctttcgtgaataatagtgaaaaatctatctcaagaaacgaaaaattgtaggaaatgtgatacttacattatataaatagataaattattataaaacagccaattctttttttaatatggatatactcatcacgcatcaccacgcaagctgcatgtgaacgttaaaaaagaattttcacgtgctaaaacaaagctaggttagaaaatataatttgccactagaaagttagtttactgtaaggcttaagaatatctttgaagaaaaagttaatgtcaaactctgattcaactttttttgtgcagccggtgaccagcacgtttttgtttgtaaacgaatccattgagagagagaaagacgagccagacgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacttcgcttatcaAAAAGTTGTCTGCGAGGATAAATGTG-TA-TTACAATATGTAATTAAATAAATATTTATGAAAAGACCA--T--TTCTTAAATTTGAATATG---AATACTATCACGGCATCACCACACATACTGCATTTTTAAAAGGCATAGATACCCTTAGAAGGCCTCTTCA--TGTG-CTAAAGTAAACAA-AGCTATG--TTAGAAA--ATAATTTGCCGCTAGAAAGTTAGCC-TATTATTAGTGA-GGT---A----AGAATATACTTTAAGGAAAA--TAATTGTTAAAACTC--------------------------T-GAAACAACTTCT--TTCTT-GGC--T-C-G-----------GTTTTTG-TTT-T--ACGAATTC--CATGCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTGTT----AC-GCTGC-GCTTGCCATGAACTTGAATTTGTC-TT---GGATTTGTTAAACA---CC-T-CTCAAGA-------GAA-TATTT--TT--ATTTTTAT--------TATATG--T--GAGAG--GAAAATAATTCATGTAT-AGATTGTCAAGAGACCT-C
gi|4 : AAAGTTAA-TGTCAAA-CTC--------------------------G-GATACAACTT-TTCTTCTTGGGCAGC-CAGGTCGTTACAAAGTTTTTGATTT-TA
gi|4 : tGTTGTGTAGACAACTGCAGCTGCTTGTCAT------GAATT-GTC-CT---GGAAT--TTAAA----------CTAAAAC------AAAG-TTCTT--TCTAATACAtatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacatttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|4 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaagTTTGTC-CT---GGATTTGTTAAATA---CC-CACCCAGGGTATTGCTAAA-TAATTACTTT--TATA---G-TA----TGTGT-------AAAG--GTGAACAT-CCATGC-C-AGAATGCCTCCAGACCA-CATGCAtttttgtcctggatttgttaaatacccacccagggtattgctaaataattacttttatagtatgtgtaaaggtgaacatccatgccagaatgcctccagaccacatgcagtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|5 : taaagttaatgtcaaactcggatacaacttttcttcttgggcagccaggtcgttacaaagtttttgattttatatccatttgagagaaagaagagagagggagaggagagagagagacagagagaaaaggttgtgtagacaactgcagctgcttgtcatgaattgtcctggaatttaaactaaaacaaagttctttctaatacattTTTTGGGAAAGGTTATTTGGTTCGGGATATTCCATTTGATTTCCCCCACAGGGGAGGGGGGG-GGCGCCGAT-GATTTTTTT---TCT-TTTGGTTTGGAGGG-------A-ATAGTTC----G--GTGT--A---TA-TAC-TG-GTA-GG-GGT-TTA----CCAGATATTTTT-----------------GGAAT-AAATTATAAAGTTTGTAAAACCTATA------TTCCTCGCGCATTTTTCGCCGTGTAAAGTGTCCACTCCACTTTTTTTTTCTACTCCAATGGCACTAACTTCCGATGTGGAGGTTCAATATGAAACAAGACGGCAAGTTTGGTATTTGCAAATAC------CATTAATTTACCGATTATAATACAC-ACTTTTT-TTTC-AAGAGTTGTTTGGTATAAGAAGGAAGTACgtgccttgatttccagtctttcgcagaagctgacttgcatatagatgtctgcccatctcatgcacaatttttaaacttttagaggaatggtgcatgaagtgtttcatttcaacatatgtttttaca
gi|6 : tgacagacgaaataaaaatttcttattgaaaaatatcacaaatctataattcacttgcgattttttagaTAGGGTGGGGGG-------A-A---------------------------AC-TT-GTG-GA-----TTAAAAACCAGATATTTTTTTCCATTGGTAGGGAGTGGAATTGAATTATAAAATTTGTAAAACTTTTG------TAC-TCTCTAATTTTTGGC-ATGTAAAGTG-CCACCCCACTTTTTTTTT-TACTCAAATAGCGCTACTTTCCGATGTGGAAATTCAATATGAAGCAAGGCGAAAAGTTTAGTATTTGCAATTAC------TGTTAATTTGCCGATTAAAATACGC-AC----------------TTGTTTGGTATGAGAAGGGGGTACG---TAT-TACATACCACTACAGGTTCTGACCA----CTTTTTGCCAGTGAAAATCGGCGATTAAATAATGTTTCGGAGAATTATCG---GAGGCTC------------TT-TTCACC--T---GAATAAAAGTGAAAAATCTATCTCA
gi|7 : ATTT-TC-CC---GGATTTGGTAAATAAGCCC-C-CTCAGTG------TAAAATACTT--T--AATATACATG-TA----CATGTA--TTTGAGAG--GGAAATAA-CCATG--CAAGAATGTT-TGAGACATCCATGT--ATACGGTG
gi|8 : TGATTTTTTT---TTT-TCTAGGGTGGGAGG-------A-AT----CTTGTG--GTGT--AAAATA-TAC-TG-GTG-GG-GGTGTTA----CCAGATATTTTCTTCCGTTGATAGGGGGTGGAATTAAATCATAAAATTTGTAAAACCTGTGAGTGTATCC-CCAC-CAATTTTCGCCATGTAAAGTG-CCACTCCACTTTT-TTTT-TACTCCAATGGCGCTACTTTCCGATGTGGAGGTTCAATATAAAACAAGGCGGCAAGTTTGGTATTTGCAATTAC------CATTAATTTGCCGATTATAATACAC-AC-ATCT-TTTC-AAGAATTGTTTGGTATGAGAAGGGAGTACA---Tcctctttctcagcaatgctattatatattttaccaatctcgtgcaaaaaaatttcacggaggagggtatggatttttcatttcaaaagcaaatgtttttacagaagagagagctctctagatttttgaaaagtaacgatgccgtttatatcgccaacattcttcagttcaacgaatggcaatatcaaatctgctaaaaacttttcattgcagccaaaatctctgtctgcttgaaattaacattactaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAGTAACGATGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN