lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 111111 333 111 11 22 4444444 1 22 2222222 2222222 111 11 7777777777777777777777777777777 11 33 11 222222 1 2222 11 444444444 9999999999999999999999999999999999999999999999999999999 11 11 111 11 1 2 1 33333 55 11 1 11 3 1 1 1 1 000000000000000000000000000000000000000000000000000 22 2222 11 3333333 444 111 3 4 22 3 222 3 11 5555 1 333 1 1 44 4 1 444444444 11
lowQualScore : 3 2 2 33 33 2 99 2 33 3 555 222222 77 8 4 000 666 99 44 11 8 55 11 7777777 6 77 0 7777777 8 6666666 444 11 1111111111111111111111111111111 3 33 00 33 777777 0 1111 33 000000000 5 0000000000000000000000000000000000000000000000000000000 5 33 99 555 88 3 0 0 3 66666 55 33 0 33 8 1 0 2 0 0 0 0 7 777777777777777777777777777777777777777777777777777 3 4 99 99 7777 22 1 5555555 66 77 0 111 0 2 1 888 3 6 0 55 6 3 666 8 0 0 0 555 3 11 8 1 4444 0 8 999 3 3 0 66 0 7 999999999 1 55 3 2 11 33 33 2 2 3
lowQualScore : . . . .. .. . .. . .. . ... ...... .. . . ... ... .. .. .. . .. .. ....... . .. . ....... . ....... ... .. ............................... . .. .. .. ...... . .... .. ......... . ....................................................... . .. .. ... .. . . . . ..... .. .. . .. . . . . . . . . . ................................................... . . .. .. .... .. . ....... .. .. . ... . . . ... . . . .. . . ... . . . . ... . .. . . .... . . ... . . . .. . . ......... . .. . . .. .. .. . . .
lowQualScore : 3 9 4 22 77 7 00 7 99 1 444 111111 22 0 4 888 888 22 22 88 0 88 55 0000000 0 00 6 8888888 0 0000000 000 00 7777777777777777777777777777777 2 88 00 88 000000 0 2222 88 000000000 7 0000000000000000000000000000000000000000000000000000000 7 66 33 777 33 3 0 0 5 22222 55 88 0 88 0 5 0 5 2 0 0 0 0 444444444444444444444444444444444444444444444444444 8 2 22 55 8888 33 7 3333333 44 99 1 777 7 5 0 333 3 0 0 88 0 2 222 0 2 8 8 000 2 00 0 4 0000 0 8 222 2 3 7 00 0 0 333333333 1 66 3 7 77 77 22 4 9 3
consensus : CTGGTATT-AAGCCGAT-GCC-CGT--AA--CT-G--CAGTTA-CG--G-G---T--A---GCCCAAT-A-T-GGCAGAACGAAAGTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TACGA---TA--AATAACTAAAA-CTGTTAAATTTAATT-CCAA-------TACGGACAAACTTTGATTCAT--AGAGATT-C--AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCCG-NT---TTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCCG--ATA-----------T-T--G--CG-----AATGAGCGT---TAA--CT-GGCAA-T--ACGGATA-ACC---GTAACTTGCAAAC--ACGCTGGTTG-TTTACA-ANAGG----TGTAGTT--TCA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTAATTTTCA--AGG---ACAAACGTC--AATGTTATA------AGT---------AC-A-TTACTTCAACAGCTAGGATGGAAGAGGATAGCG-GG-TATCATTTTCTCAGTTACGG-TCATCCGCATTTCAGANAGTT-CATTAG--TTA---CGGGCATCAATAGCGG--CAGTTACACGCATCATCACTGGTGTCA-TTTTGGCGATGTTTGGAGTTTTTTATGACGATACTTT-GCG-TTCCAAATCATTCCNAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGCTAT-TTCAAT-AAATAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGCCC-ATA-TTGGGCT-A-CCCG-TAACTG--CAG--TT--ACG-GGC-ATCGGCTT-AATACCA
Reference ( gi|1 ) : CTGGTATT-AAGCCGAT-GCC-CGT--AA--CT-G--CAGTTA-CG--G-G---T--A---GCCCAAT-A-T-GGCAGAAAGAAAGTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCAATACGA---TAC-AATAACT-AA--CTGTTAAATTTAATT-CCAA-------TACGGACAAACGTTGATTCAT--AGAGAT--C--AG--TTATTTGGGCTC---ATTCA-TATGTATTA--CGTGTCCTGGTTT--ATCCG-GT---TTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGC----ATA-----------T-T--G--CG-----AATGAGTGT---TAA--C--GGCAA-T--ACGGAT--ACC---GTAACTTGCAAAC--ACGCTGGTTG-TT-ACA-ATAGC----TGTAGTTAATCA--GTATC-AT--GGGACTTTT-GCAGCAT-TTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTAATTTTCA--AAG---A----------AAT-TCATA------AGT---------A--A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC--GG-CATCATTTTCTCAGTTACGG-GCATCCACATTTC-GAAAGTT-CATTAG--TTAT-GCGGGCATCAATAGCGA--CAGTTACACGCAT-ATCACTAATGTCATTTTTGGCGATGTTTGGAGTTTTTTATGACGATATTTT-GTGTTTCCAAATCATTCCCAATTTTACTAAAAATAC--ACACTA-GACTATGAAGC-ATATTCAAT-AACTAAAC-ACAAAAGAAAAAAAAC-AGAGATAAATGACCTAACCCAGAATCTGTGGCCGCCCAATC-TTGGGCT-A-CCCG-TAACTG--CAG--TT--ACG-GGC-ATCGGCTT-AATACCA
gi|3 : CTGGTATT-AAGCCGAT-GCC-CGT--AA--CT-G--CAGCTA-
gi|2 : ttcaCTGATATT-AAGCCGAG-GCC-CGTTAAA--CA-G--CA-TTAGCA--G-G---T--A---GCATAA--G-T-GGCAGAC-GAAAGTAC-AAGCTTG--AATATAGTTTT--GC-TTTTT-ATCA-TACGA---TTA-AATAAAT-AAA-CCGTTAA--TTA----CCAA-------TACGGACAAACTTTGATTCAT--ACAGATT-C--AG--TTAT------------------ATGTATTA--CGTGTC-TGGTTT--ATCTG-TT---TTAA-CGTATG----AAAAA--AAAGAAGAGAGAAATGATGCGTTGTAAC-GC----ATA-----------T-T--GG-CG-----A-TGAGTGT----AA--CTGGGCAA-TC-ACGGAT--ACCCGTGTAATTTGCAAAC--ACGCTGGTTGTTT-ACA-ATAGG----TGTAGTT--TCA--GTATCTGT--GGGACTTTT-GCA-CATCTTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTA--TTCCA--AAGAACA----------AACGTCATA------AATTTATAGTACA--G-TTACTTCAACAGCTAGGATGGCAGAGGACAGCGGGG-TGTCATT---CCAGTTACGGTTTATCCA----TC-A--------ATTAG--TTA---CGGGCAGCAATAGCGG--CAG-TACACGCATCATCACTGGTGTCA--TTTGGCGATGTTTGGAGTTTTATGCGA--ATCTTTTGGTG-TTCCAAA-CATTCGAAATTCTA-TGAAAATGCAAACACTATGACTAAGAAGCTAT-TTCAATAAACTAAAT-----AACAAAGAAAAC-AGAGAT-AATG-TCTAACCC-GATTCTGTGGCCAC---------G--------CCG-TATCTG--CAG--TT--ACG-GGCAATCGGCTT-AAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|6 : CTGGTATT-AAGCCGAT-GCC-CGT--AA--CT-G--CAGATA-CG--G-G---T--G---GCCaa
gi|7 : gaggacagcgggtgtcattctcagttacggttatccacatcattagttacgggcatcaatagcggcagttacacgcatcatcactggtgtcattttggcgatgtttggagttttatgacgatactttgtgttccaaatcattcgaattctatgaaaatgcacactagactaagaagctatttcaataaataaataacaaaagaaaaaacagagataaatgtctaacccgattctgtCTGGTATTTAAGCCGAT-GCC-CGT--AA--AT-GT-CAGTTA-CG--G-G---TC-A---GTCCAAT-A-T-GGCAG-ACGAAAGTAC-G-GCTCG----TATA--TTTTTGCATTTT--ATC-ATACGA---T---AATAACTAAA--CTGTGAAA-TTAATTGCCAT-------TAAGGACAAA-ACTGATTCAT--AGAGAT--TCAAG--TTA-TTGGTCCCTCAATACATTATG-ATCA--CGTGT-CTGGTTTACATCCG-TG---TTAA-CGTATG----AAGAA--t
gi|10 : ataccaCTGGTATT-AAGCGCAT-TCC-CGT--AA--CT-G--CA--TA-CG--G-G---T------GCCCAATGA-TAGGCAG-ACGAAAGTAC-GCGC-CGGCAATAT-TTGTTTTCT-TTTT--ATCAGTaaaac
gi|14 : caCTGATATT-AAGCCGAG-GCC-CTT--AA--CA-G--CAGTTA-CG--G-G---T--A---GCCCAAT-A-T-GGCgagcgaaaatagat
gi|13 : tcaCTGGTATG-AAGGCGAT-G---CGT--AA--CTGG--CAGTTA-CGGTG-G---T--G---AGCTAAT-AGT-GGCAGA
gi|18 : caCTGGTATT-AAGCCGAT-GCC-CGT--A
gi|17 : tcaCTGGTATT-AAGCCGAT-GCC-CGT--A
gi|7 : tcaTATT-GGACTGA---CC-CGT--AA--CT-GA-CATTTA-CG--G-G---C--A---
gi|14 : ataccactggtatttaagccgaTATT-GGGC---T-ACC-CGT--AA--CT-G--CTGTTA-AG--G-GCCTC--G---GCTTAAT-A-T-tggcagacgaaagtacggctcgtatatttttgcattttatcatacgataataactaaactgtgaaattaattgccattaaggacaaaactgattcatagagattcaagttattggtccctcaatacattatgatcacgtgtctggtttacatccgtgttaacgtatgaagaaaaaac
gi|2 : tcactgTT-AAGCCGATTGCC-CGT--AA--CT-G--CAGATA-CG--GCG---T--G---GCCtggc
gi|12 : ctgatattaagccgaggcccgttaaacagcattagcaggtagcataagtggcagacgaaagtacaagcttgaatatagttttgctttttatcatacgattaaataaataaaccgttaattaccaatacggacaaactttgattcatacagattcagttatatgtattacgtgtctggtttatctgttttaacgtatgaaaaaaaagaagagagaaatgatgcgttgtaacgcatattggcgatgagtgtaactgggcaatcacggatacccgtgtaatttgcaaacacgctggttgtttacaataggtgtagtttcagtatctgtgggacttttgcacatcttatctagtgtatatcgatcagtaacttttatgttttattccaaagaacaaacgtcataaatttatagtacagttacttcaacagctaggatggcagaggacagcggggtgtcattccagttacggtttatccatcaattagttacgggcagcaatagcggcagtacacgcatcatcactggtgtcatttggcgatgtttggagttttatgcgaatcttttggtgttccaaacattcgaaattctatgaaaatgcaaacactatgactaagaagctatttcaataaactaaataacaaagaaaacagagataatgtctaacccgattctgtT-ACC-CGT--AA--CT-G--CAGTTA-CG--aa
gi|12 : agccg-GCCGCGT--AA--CT-G--CAGTTA-CG--G-G---T--A---GCCC----A-T-GGCAG-ACGAAAGTAC-G-CCTTG--AATATATgcccatggcagacgaaagtacgccttgaatatat
gi|6 : aCC-CGT--AT--CT-G--CAGTTA-CG--G-G---C--ATCGGCTTAAT-A-
gi|9 : gaggacagcgggtgtcattctcagttacggttatccacatcattagttacgggcatcaatagcggcagttacacgcatcatcactggtgtcattttggcgatgtttggagttttatgacgatactttgtgttccaaatcattcgaattctatgaaaatgcacactagactaagaagctatttcaataaataaataacaaaagaaaaaacagagataaatgtctaacccgattctgtggccaCT-CGT--AATACT-G--CAGTTA-CG--G-G---T--A---GTCCAA--A-T-GGCAGACGAAAAGTAC-T-GCTTG--AA-ATATATGTTTGC-TTTT--ATC-ATACGAAGGTACTAATAACTAAA--CTGTGAAGTT--ATT-CCAA-------TACGGACAAACCTTGATTCATGCAGAAAT--C--AGTATTATTccagt
gi|4 : actgggtaatctaatgcgcgattgt-CGT--AA--CT-GAGCAGTTA-CG--G-G---TTCA----CCCAAT-ACT-GGCAGGACGAAAG-ACTG-GCTCG--AATATATTTTGTAGC-TTTTCTATCATAACGAC--TA--AATCACT-AAAGCTGTTA--TTTA-TT-CCAAGGAGGCATACGGACAA-CTTTGATTCAT--AGAGACTCC--AG--GTATT-GGTCTTG--ATTC----TGTCTTATACGTGTC-TGGTTT--ATCCT-GTGTTCTAAGCGTATG----AAAAAAACAG---------A-TGATGTGT-GTAACTGC----ATA-----------T-TCCG--CG-----A-TGAGTGT---AAAACT--GGCAAAT--ACGGAT--GCC---CTAACTTGCAAACGGACGTTGGTTG-TTTACGGAGAGGAGGGTGTAGTTT-TCAAGGTATC-ATTGGGGATTTTT-GCAATAT-TTATCTAGT--------ATCAGTTAACATTTTAATGTTTTAATTTTCA--AGA---ACAAACGTCT-AAT-TTATA------AGT---------AGCA-TTACTTCAACAGCTAGG-TGGAAGAGGA-AGC--GG-
gi|3 : atgTTT--GTCA-TACGA---TA--AATAACT-AAA-CTGTTAAATT--ATT-CCAA-------TACGGACGAACTTTGATT--------------------TGATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCCGTGT---TTAT-CGTATGGGAAAAAAA--CAG---------AATGATGCGT-GTAACTGC----ATAGTTGTCTATAAT-C--G--CG-----A-TCAGTGT----AA--CT-GGCAA-T--ACGGAT--ACCC--GTAACTTGCAAAC--ACGCTGGTTG-TTTACA-ATAGG----TGTAGTT--TCA--GTATT-AT--GGGACTTTTTGCA-CAT-TTATCTAGTGTATATCAATCAG-TAAT-TTTT-ATGTTTTAGTTTTCAAGAAC---A----------AACGTCATAATTTATAGT---------AC-A-TTACTTCAACAGCTAGGATGGAAGAAGATAGCG-GG-TATCA-ATTCTCAGTTACGG-TTATCCACATTTCAGAAAGTT-CATTAG--TTA---CGGGCATATATAGCGG--CAGTTACACGCATCATCACTGATGTCA-TTCTGGCGACGTTTGGAG--TTTTATGATGATACTTT-GCG-TTCCAAATCATT-CCAATTTTA-TAAAAATAC--ACACTA-GATTATGAAGCTAT-TTCAAT-AAATATATAACAAAAGA
gi|15 : ttcactggtattaagccgatgcccgtaactgcagctagaaAG---------AATGATGCGT---AACTGC----ATA-----------G-TA-G--C------AATGAGTG----TAA--CT-GGCAA-T--ACGGAT--ACC---
gi|3 : ATGATGCGT-GTAACTGCCGCTATA-----------TAT--GCCCGTAACTAATGAACTT---T----C--TGAAA-T--GTGGATA-ACC---GTAACT
gi|2 : ttcactggtattaagccgatgcccgtaactgcagctagaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcATGATGCGT-GT-ACTGCCG--CTA-----------T-T--G--C--------TGCCCG----TAA--C----TAA-TTGATGGATAAACC---GTAACTcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|6 : ctgatattaagccgaggcccgttaaacagcattagcaggtagcataagtggcagacgaaagtacaagcttgaatatagttttgctttttatcatacgattaaataaataaaccgttaattaccaatacggacaaactttgattcatacagattcagttatatgtattacgtgtctggtttatctgttttaacgtatgaaaaaaaagaagagagaaatgatgcgttgtaacgcatattggcgatgagtgtaactgggcaatcacggatacccgtgtaatttgcaaacacgctggttgtttacaataggtgtagtttcagtatctgtgggacttttgcacatcttatctagtgtatatcgatcagtaacttttatgttttattccaaagaacaaacgtcataaatttatagtacagttacttcaacagctaggatggcagaggacagcggggtgtcattccATGATGCGT-GTAACTGCCG--CTA-----------T-T--G----------ATGCCCGTAACTAA--T--G---A-T--GTGGATA-ACC---GTAACTcactggtgtcatttggcgatgtttggagttttatgcgaatcttttggtgttccaaacattcgaaattctatgaaaatgcaaacactatgactaagaagctatttcaataaactaaataacaaagaaaacagagataatgtctaacccgattctgtggccacgccgtatctgcagttacgggcaatcggcttaaaa
gi|16 : gaggacagcgggtgtcattctcT-ACA-AAAGG----TGTAGTT--TCA--GTATC-AT--GGGACTTTT-cactggtgtcattttggcgatgtttggagttttatgacgatactttgtgttccaaatcattcgaattctatgaaaatgcacactagactaagaagctatttcaataaataaataacaaaagaaaaaacagagataaatgtctaacccgattctgtggccacccgtatctgcagttacgggcatcggcttaataccagt
gi|8 : TTT-GCA-CAT-TTATCTAGTGTATATCGATCAA-TAAC-TTTT-ATGTTTTAATTTTCA--AGG---ACAAACGTCAAAAT-TTATA-------GT---------A--AATTACTTCAACAGCTAGGATGGAGGAGGATAGCG-GG-TATCA-TTTCTCAGTTACGG-ACATCCACATTTCAGAAAATT-CATTAG--TTA---CGGGCATt
gi|5 : ----------AAT-TTATA-------GT---------AC-A-TTACTTCAACAGCTAGGGTGGAAGACGATAGCG-GG-CATCA-TTTCTCAGTTCCGG-TCATCCACATTTCAGAGAGTT-CATTAG--TTA---CGGGCATCAATAGCGG--TAGTTACACGCATCATCACTGATGTCA-TTTTGGCGATGTTTGGAG--TTTTATGACGA----TT-GTG-TTCCAAATCATT-CCAATTTTA-TAAAAATAC--ACGCTA-AACTATGAAGCTAT-TTCAAA-AAATGAATAACAAAAGAAAAAAAACAAGGGATNAATacacgcagtacataca
gi|6 : atttctggcctcagtaagttataagaacaaacgtcatGAGGACAGC--GGGTGTCATT--CTCAGTTACGG-TTATCCACAT------------CATTAG--TTA---CGGGCATCAATAGCGG--CAGTTACACGCATCATCACTGGTGTCA-TTTTGGCGATGTTTGGAG--TTTTATGACGATACTTT-GTG-TTCCAAATCATT-CGAATTCTA-TGAAAATGC--ACACTA-GACTAAGAAGCTAT-TTCAAT-AAATAAATAACAAAAG--AAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCC-----------------A-CCCG-TATCTG--CAG--TT--ACG-GGC-ATCGGCTT-AATACCA
gi|3 : AGTTACGG-GTATCCGTATT---GCCAGTTACACTGA--T--C-GCGATTATAGACAACTATGCAGTTACACGCAT-gt
gi|4 : ttcactggtattaagccgatgcccgtaactgcagctagaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgAGTTA-GG-GCATCCGTATTT--GCCAGTT---TTACACTCATCGCGG-----AATA-TG---CAGTTACACACATCATCtgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|11 : atgcgtaactgagcagttacgggttcacccaatactggcaggacgaaagactggctcgaatatattttgtagcttttctatcataacgactaaatcactaaagctgttatttattccaaggaggcatacggacaactttgattcatagagactccaggtattggtcttgattctgtcttatacgtgtctggtttatcctgtgttctaagcgtatgaaaaaaacaATGTTTGGAGTTTT--ATGACAATACTTT-GCGTT-CCAAATCATTCC-ATTTTTTTTAAAAATAC--ACACTA-GACTATGAAGC--TATTtgcaaacggacgttggttgtttacggagaggagggtgtagttttcaaggtatcattggggatttttgcaatatttatctagtatcagttaacattttaatgttttaattttcaagaacaaacgtctaatttataagtagcattacttcaacagctaggtggaagaggaagcgg
gi|7 : CTGCC--ATA-TTGGACTGA-CCCG-TAACTGA-CAT--TT--ACG-GGC-ATCGGCTTAAATACCA
gi|4 : ataccacCCAGTA-TTGGGTG-AACCCG-TAACTGCTCAG--TT--ACG-acgaaagtacggctcgtatatttttgcattttatcatacgataataactaaactgtgaaattaattgccattaaggacaaaactgattcatagagattcaagttattggtccctcaatacattatgatcacgtgtctggtttacatccgtgttaacgtatgaagaaaaaac
gi|10 : atgCCTATCATTGGGC--A-CCCG-TA--TG--CAG--TT--ACG-GGA-ATGCGCTT-AATACCAcaggacgaaagactggctcgaatatattttgtagcttttctatcataacgactaaatcactaaagctgttatttattccaaggaggcatacggacaactttgattcatagagactccaggtattggtcttgattctgtcttatacgtgtctggtttatcctgtgttctaagcgtatgaaaaaaacagatgatgtgtgtaactgcatattccgcgatgagtgtaaaactggcaaatacggatgccctaacttgcaaacggacgttggttgtttacggagaggagggtgtagttttcaaggtatcattggggatttttgcaatatttatctagtatcagttaacattttaatgttttaattttcaagaacaaacgtctaatttataagtagcattacttcaacagctaggtggaagaggaagcgg
gi|14 : cacATA-TTGGGCT-A-CCCG-TAACTG--CTG--TT--AAG-GGC-CTCGGCTT-AATATCAcagacgaaagtacgcgccggcaatatttgttttctttttatcagtgagcgaaaatagat
gi|2 : tcacC-TTATGCT-A-CCTGCTAA-TG--CTG--TTTAACG-GGC-CTCGGCTT-AATATCAggc
gi|9 : c-TTGGACT-A-CCCG-TAACTG--CAGTATT--ACG-AGtggcagacgaaagtacaagcttgaatatagttttgctttttatcatacgattaaataaataaaccgttaattaccaatacggacaaactttgattcatacagattcagttatatgtattacgtgtctggtttatctgttttaacgtatgaaaaaaaagaagagagaaatgatgcgttgtaacgcatattggcgatgagtgtaactgggcaatcacggatacccgtgtaatttgcaaacacgctggttgtttacaataggtgtagtttcagtatctgtgggacttttgcacatcttatctagtgtatatcgatcagtaacttttatgttttattccaaagaacaaacgtcataaatttatagtacagttacttcaacagctaggatggcagaggacagcggggtgtcattccagttacggtttatccatcaattagttacgggcagcaatagcggcagtacacgcatcatcactggtgtcatttggcgatgtttggagttttatgcgaatcttttggtgttccaaacattcgaaattctatgaaaatgcaaacactatgactaagaagctatttcaataaactaaataacaaagaaaacagagataatgtctaacccgattctgtggccacgccgtatctgcagttacgggcaatcggcttaaaa
gi|12 : actgggtaatctaatgcgcgattgtTGGGCT-A-CCCG-TAACTG--CAG--TT--ACGCGGC-atggcagacgaaaagtactgcttgaaatatatgtttgcttttatcatacgaaggtactaataactaaactgtgaagttattccaatacggacaaaccttgattcatgcagaaatcagtattatt
gi|6 : aT-G-CCCG-TAACTG--CAG--AT--ACG-GGtggcagacgaaagtacgccttgaatatat
gi|7 : gaggacagcgggtgtcattctcagttacggttatccacatcattagttacgggcatcaatagcggcagttacacgcatcatcactggtgtcattttggcgatgtttggagttttatgacgatactttgtgttccaaatcattcgaattctatgaaaatgcacactagactaagaagctatttcaataaataaataacaaaagaaaaaacagagataaatgtctaacccgattctgtggccaT-G-CCCG-TAAATGT-CAG--TT--ACG-GG---TCAGTCC-AATAtcggcttaataccagt
gi|14 : ataccactggtatttaagccga-CCCT-TAACAG--CAG--TT--ACG-GGT-A---GCCC-AATAtggcagacgaaagtacggctcgtatatttttgcattttatcatacgataataactaaactgtgaaattaattgccattaaggacaaaactgattcatagagattcaagttattggtccctcaatacattatgatcacgtgtctggtttacatccgtgttaacgtatgaagaaaaaac
gi|13 : tcactgatattaagccgaggCCG-TAACTGC-CAG--TT--AC---GC-ATCGCCTT-CATACCAtggc
gi|12 : cacCG-TAACTG--CAG--TT--ACG-GGT-Atggtgagctaatagtggcaga
gi|3 : agccg-TAGCTG--CAG--TT--ACG-GGC-ATCGGCTT-AATACCAgcccatggcagacgaaagtacgccttgaatatat
gi|18 : ttcacT--ACG-GGC-ATCGGCTT-AATACCAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|17 : tcacT--ACG-GGC-ATCGGCTT-AATACCA
Alignments
lowQualScore : 111111111111111
lowQualScore : 11 1111 11 111 11 33333333 1 111 2222222 1111 2222222222 11 11 111 1111 11 333333333 7777777777 11 2 2 11 11 11 1111 11 11 11 1 555555555 11 1111 1111 33 1 1 1 1 222222222222222 1
lowQualScore : 4 3 44 55 4 99 4 66 00 0000 4 66 5 333 77 1 6 33 5 6 11111111 7 8 88 333 6 1111111 6 5 99 6666 99 5 0 3333333333 0 11 8 11 444 99 8 7777 11 222222222 0 8 0 4444444444 8 99 8 0 6 5 8 0 8 8 8 22 2 33 33 3 8 1 7777 11 8 11 8 11 6 6 8 8 8 8 1 6 888888888 44 99 6 1 2 6 5555 6 6 3 0000 1 99 0 88 00 3 99 0 6 4 6 99 6 6 8 0 0 0 0 5 3 3 222222222222222 8 3
lowQualScore : . . .. .. . .. . .. .. .... . .. . ... .. . . .. . . ........ . . .. ... . ....... . . .. .... .. . . .......... . .. . .. ... .. . .... .. ......... . . . .......... . .. . . . . . . . . . .. . .. .. . . . .... .. . .. . .. . . . . . . . . ......... .. .. . . . . .... . . . .... . .. . .. .. . .. . . . . .. . . . . . . . . . . ............... . .
lowQualScore : 4 3 66 55 0 55 0 11 66 6666 4 22 7 000 99 4 7 66 7 7 00000000 3 0 88 777 7 7777777 7 7 22 3333 22 6 6 8888888888 8 00 0 00 000 00 0 0000 00 000000000 8 0 8 0000000000 0 00 0 4 0 6 0 8 0 0 0 88 5 88 88 2 0 0 0000 00 0 00 0 00 7 0 0 0 0 0 7 7 888888888 77 22 7 7 3 7 7777 7 0 2 3333 0 22 8 88 77 5 22 7 7 0 7 22 7 7 0 8 8 8 0 8 3 3 000000000000000 3 3
consensus : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATC-ATA-CGA---T-A--AATAACTAAAACTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGT-CTGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGC----------ATA-TT--G-CGAATGAGTGT-AA-CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTCAAGGA-CAAACGTC--A---AT-TTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGCGGG-TATCATTTTCTCAGTTACGGTC-ATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCA-TTTTGGCGATGTTTGGAG--TTTTATGACGATACTTT--GCG-TTCCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGCTAT-TTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC--------G----ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
Reference ( family-5663 ) : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATC-ATA-CGA---T-A--AATAACTAAAACTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGT-CTGGTTT--ATCC---GN-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGC--------CGATA-TT--G-CGAATGAGCGTTAA-CTGG-CAA-T-ACGGATAACCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ANAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTCAAGGA-CAAACGTC--A---ATGTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGCGGG-TATCATTTTCTCAGTTACGGTC-ATCCGCATTTCAGANAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGGTGTCA-TTTTGGCGATGTTTGGAGTTTTTTATGACGATACTTT--GCG-TTCCAAATCATTCCNAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGCTAT-TTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGCCC-ATATTGGGCTACCCGTAACTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|1 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAAAGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCAATA-CGA---T-AC-AATAACT--AACTGTTAAATTTAATT-CCAA-------TACGGAC-AAACGTTGATTCAT--AGAGA-TC-AG--TTATTTGGGCTC---ATTCA-TATGTATTA--CGTGTCCTGGTTT--ATCC---GG-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGC----------ATA-TT--G-CGAATGAGTGTTAA-C-GG-CAA-T-ACGGAT-ACCGT--AACTTGCAAAC--ACGCTGGTTG-TTACA-ATAGC----TGTAGTTAAT-CA--GTATC-AT--GGGACTTTT-GCAGCAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTCAAAGA-----------A---AT-TCATAAGTA--A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GG-CATCATTTTCTCAGTTACGGGC-ATCCACATTTC-GAAAGTTCATTAGTTATGCGGGCATCAATAGCGACAGTTACACGCAT-ATCACTAATGTCATTTTTGGCGATGTTTGGAGTTTTTTATGACGATATTTT--GTGTTTCCAAATCATTCCCAATTTTACTAAAAATAC--ACACTA-GACTATGAAGC-ATATTCAATAAC-TAAAC-ACAAAAGAAAAAAAAC-AGAGATAAATGACCTAACCCAGAATCTGTGGCCGCCCAATCTTGGGCTACCCGTAACTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|10 : CTGGTATT-AAGCGCATTCC-CGT--AA--CT-G--CA--TA-CG--GGT---GCCCAATGA-TAGGCAG-ACGAAA-GTAC-GCGC-CGGCAATAT-TTGTTTTCT-TTTT--ATC-A
gi|11 : caATGTTTGGAGTTTT--ATGACAATACTTT--GCG-TTCCAAATCATTCCATTTTTTT-TAAAAATAC--ACACTA-GACTATGAAGCTAT-Tgtgagcgaaaatagat
gi|12 : GCCGCGT--AA--CT-G--CAGTTA-CG--GGT--AGCCC----A-T-GGCAG-ACGAAA-GTAC-G-CCTTG--AATATAT
gi|13 : aCTGGTATG-AAGGCGATG---CGT--AA--CTGG--CAGTTA-CGGTGGT--GAGCTAAT-AGT-GGCAGA
gi|14 : caCTGATATT-AAGCCGAGGCC-CTT--AA--CA-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGC
gi|15 : tcaAG---------AATGATGCGT---AACTGC----------ATA-GTA-G-C-AATGAGTGT-AA-CTGG-CAA-T-ACGGATA
gi|16 : TACA-AAAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-cc
gi|17 : CTGGTATT-AAGCCGATGCC-CGT--At
gi|18 : tcaCTGGTATT-AAGCCGATGCC-CGT--A
gi|2 : tcaCTGATATT-AAGCCGAGGCC-CGTTAAA--CA-G--CA-TTAGCA--GGT--AGCATAA--G-T-GGCAGA-CGAAA-GTAC-AAGCTTG--AATATAGTTTT--GC-TTTTT-ATC-ATA-CGA---TTA--AATAAATAAA-CCGTTAA--TTA----CCAA-------TACGGAC-AAACTTTGATTCAT--ACAGATTC-AG--TTAT------------------ATGTATTA--CGTGT-CTGGTTT--ATCT---GT-TTTAA-CGTATG----AAAAA--AAAGAAGAGAGAAATGATGCGTTGTAAC-GC----------ATA-TT--GGCGA-TGAGTGT-AA-CTGGGCAA-TCACGGATACCCGTGTAATTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATCTGT--GGGACTTTT-GCA-CATCTTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTA--TTCCAAAGAACAAACGTC--ATAAAT-TTATA-GTA-CAGTTACTTCAACAGCTAGGATGGCAGAGGACAGCGGGGTGTCATTC---CAGTTACGGTTTATCCA----TCA--------ATTAGTTA--CGGGCAGCAATAGCGGCAGT-ACACGCATCATCACTGGTGTCA--TTTGGCGATGTTTGGAG--TTTTATG-CGAATCTTTTGGTG-TTCCAAA-CATTCGAAATTCTA-TGAAAATGCAAACACTATGACTAAGAAGCTAT-TTCAATAAACTAAATAAC-----AAAGAAAAC-AGAGAT-AATG-TCTAACCC-GATTCTGTGGCCAC--------G------CCGTATCTGCAGTTACGGGCAATCGGCTTAA
gi|3 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGCTA-aa
gi|3 : ttcaTTT--GTC-ATA-CGA---T-A--AATAACTAAA-CTGTTAAATT--ATT-CCAA-------TACGGAC-GAACTTTGATT------------------TGATTTGGTCTC---ATTCA-TATGTATTA--CGTGT-CTGGTTT--ATCC---GTGTTTAT-CGTATGGGAAAAAAA--CAG---------AATGATGCGT-GTAACTGCATAGTTGTCTATAATC--G-CGA-TCAGTGT-AA-CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATT-AT--GGGACTTTTTGCA-CAT-TTATCTAGTGTATATCAATCAGT-AAT-TTTTA-TGTTTTAGTTTTCAAGAA-CAAACGTCATA---AT-TTAT-AGTA-CA-TTACTTCAACAGCTAGGATGGAAGAAGATAGCGGG-TATCA-ATTCTCAGTTACGGTT-ATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATATATAGCGGCAGTTACACGCATCATCACTGATGTCA-TTCTGGCGACGTTTGGAG--TTTTATGATGATACTTT--GCG-TTCCAAATCATTCC-AATTTTA-TAAAAATAC--ACACTA-GATTATGAAGCTAT-TTCAATAAA-TATATAACAAAAGAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|4 : ttcactggtattaagccgatgcccgtaactgcagctagaa-CGT--AA--CT-GAGCAGTTA-CG--GGTTCA-CCCAAT-ACT-GGCAGGACGAAA-G-ACTG-GCTCG--AATATATTTTGTAGC-TTTTCTATC-ATAACGAC--T-A--AATCACTAAAGCTGTTA--TTTA-TT-CCAAGGAGGCATACGGAC-AA-CTTTGATTCAT--AGAGACTCCAG--GTATT-GGTCTTG--ATTC----TGTCTTATACGTGT-CTGGTTT--ATCCTGTGT-TCTAAGCGTATG----AAAAAAACAG---------A-TGATGTGT-GTAACTGC----------ATA-TTCCG-CGA-TGAGTGTAAAACTGG-CAAAT-ACGGATGCCC-T--AACTTGCAAACGGACGTTGGTTGTTTACGGAGAGGAGGGTGTAGTT--TTCAAGGTATC-ATTGGGGATTTTT-GCAATAT-TTATCTAGT--------ATCAGTTAACATTTTAATGTTTTAATTTTCAAGAA-CAAACGTCT-A---AT-TTATAAGTAGCA-TTACTTCAACAGCTAGG-TGGAAGAGGA-AGCGG
gi|5 : atgTAAGTTATAAGAA-CAAACGTC--ATA-AT-TTATA-GTA-CA-TTACTTCAACAGCTAGGGTGGAAGACGATAGCGGG-CATCATTT-CTCAGTTCCGGTC-ATCCACATTTCAGAGAGTTCATTAGTTA--CGGGCATCAATAGCGGTAGTTACACGCATCATCACTGATGTCA-TTTTGGCGATGTTTGGAG--TTTTATGACGA----TT--GTG-TTCCAAATCATTCC-AATTTTA-TAAAAATAC--ACGCTA-AACTATGAAGCTAT-TTCAAAAAA-TGAATAACAAAAGAAAAAAAACAAGGGATNAAT
gi|6 : atttctggcctcagGAGGACAGCGGG-TGTCATT--CTCAGTTACGGTT-ATCCACAT-----------CATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGGTGTCA-TTTTGGCGATGTTTGGAG--TTTTATGACGATACTTT--GTG-TTCCAAATCATT-CGAATTCTA-TGAAAATGC--ACACTA-GACTAAGAAGCTAT-TTCAATAAA-TAAATAACAAAAG--AAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCC---------------ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|7 : CTGGTATTTAAGCCGATGCC-CGT--AA--AT-GT-CAGTTA-CG--GGTC-AGTCCAAT-A-T-GGCAG-ACGAAA-GTAC-G-GCTCG----TATA--TTTTTGCATTTT--ATC-ATA-CGA---T----AATAACT-AAACTGTGAAA-TTAATTGCCAT-------TAAGGACAAAAC--TGATTCAT--AGAGATTCAAG--TTA-TTGGTCCCTCAATACATTATG-ATCA--CGTGT-CTGGTTTACATCC---GT-GTTAA-CGTATG----AAGAA--gt
gi|8 : ataccaTTT-GCA-CAT-TTATCTAGTGTATATCGATCAAT-AAC-TTTTA-TGTTTTAATTTTCAAGGA-CAAACGTCAAA---AT-TTAT-AGTA-AA-TTACTTCAACAGCTAGGATGGAGGAGGATAGCGGG-TATCA-TTTCTCAGTTACGGAC-ATCCACATTTCAGAAAATTCATTAGTTA--CGGGCATaaaac
gi|9 : CT-CGT--AATACT-G--CAGTTA-CG--GGT--AGTCCAA--A-T-GGCAGA-CGAAAAGTAC-T-GCTTG--AA-ATATATGTTTGC-TTTT--ATC-ATA-CGAAGGT-ACTAATAACTAAA-CTGTGAAGTT--ATT-CCAA-------TACGGAC-AAACCTTGATTCATGCAGAAA-TC-AGTATTATTacacgcagtacataca
Alignments
lowQualScore : 11 1111 11 111 33333333 2 11 2222222 11111 2222222222 11 11 111 2222 3333333333 444444444444444 11 11 11 11 1111 11 11 11 333333 11 22 1 1 1 1 9999999999999999 1
lowQualScore : 4 3 44 55 4 99 4 66 00 0000 4 66 5 333 77 1 6 77 5 5 6 11111111 2 44 44 6 1111111 88 5 99 66666 99 7 0 3333333333 0 11 8 11 444 8 8 8888 2222222222 8 0 666666666666666 8 11 99 0 8 8 8 55 33 33 0 8 1 7777 8 11 11 8 11 6 8 8 8 8 8 8 1 6 0 666666 44 99 6 1 2 5 3 22 6 3 6666 1 99 0 0 8 99 3 99 0 6 6 6 99 6 6 0 8 0 0 0 0 5 3 3 2222222222222222 3
lowQualScore : . . .. .. . .. . .. .. .... . .. . ... .. . . .. . . . ........ . .. .. . ....... .. . .. ..... .. . . .......... . .. . .. ... . . .... .......... . . ............... . .. .. . . . . .. .. .. . . . .... . .. .. . .. . . . . . . . . . . ...... .. .. . . . . . .. . . .... . .. . . . .. . .. . . . . .. . . . . . . . . . . . ................ .
lowQualScore : 4 3 66 55 0 55 0 11 66 6666 4 22 7 000 99 4 7 99 7 7 7 00000000 0 88 55 7 7777777 33 7 22 33333 22 3 6 8888888888 8 00 0 00 000 0 0 0000 8888888888 0 8 888888888888888 0 44 00 8 0 0 0 00 88 88 8 0 0 0000 0 00 00 0 00 7 0 0 0 0 0 0 7 7 7 888888 77 22 7 7 3 7 5 77 7 2 2222 0 22 8 8 0 22 5 22 7 7 2 7 22 7 7 8 0 8 8 8 0 8 3 3 7777777777777777 3
consensus : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTT--T-ATCA-T-ACGA---T-A--AATAACTAAA-CTGTTAAATTTAATT-CCA-------ATACGGAC-AAACTTTGATTCAT--AGAGA-TTC-AG--TTATTTGGTCTC---ATTCA-TATGTAT--TACGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAACAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT--AACTGG-C-AAT-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTAC-AATA----GGTGTAG-TT--TCA--GTATC-AT--GGGACTTTT-GC-A-CAT-TTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTAATTTTC-AAGAACAAACGTC---A--ATTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
Reference ( family-5663 ) : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTT--T-ATCA-T-ACGA---T-A--AATAACTAAAACTGTTAAATTTAATT-CCA-------ATACGGAC-AAACTTTGATTCAT--AGAGA-TTC-AG--TTATTTGGTCTC---ATTCA-TATGTAT--TACGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAACAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT--AACTGG-C-AAT-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTAC-AATA----GGTGTAG-TT--TCA--GTATC-AT--GGGACTTTT-GC-A-CAT-TTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTAATTTTC-AAGGACAAACGTC---A--ATTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTTTCTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|1 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAAAGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTT--T-ATCAAT-ACGA---T-AC-AATAACTAA--CTGTTAAATTTAATT-CCA-------ATACGGAC-AAACGTTGATTCAT--AGAGA-T-C-AG--TTATTTGGGCTC---ATTCA-TATGTAT--TACGTGTCCTGGTTT--ATCC---GG-TTTAA-CGTATG----AAAAACAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGTT-AAC-GG-C-AAT-ACGGATACC-GT--AACTTGCAAAC--ACGCTGGTTGTT-AC-AATA----GCTGTAG-TTAATCA--GTATC-AT--GGGACTTTT-GC-AGCAT-TTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTAATTTTC-AAAGA-----------A--ATTCATAAGTA--A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GG-CATCATTTTCTCAGTTACGG-GCATCCACATTTC-GAAAGTTCATTAGTTATGCGGGCATCAATAGCGACAGTTACACGCAT-ATCACTAATGTCATTTTTGGCGATGTTTGGAGTTTTTTATGACGATATTTT--GTGTTTCCAAATCATTCCCAATTTTACTAAAAATAC--ACACTA-GACTATGAAGCATATT-CAATAAC-TAAACA-CAAAAGAAAAAAAAC-AGAGATAAATGACCTAACCCAGAATCTGTGGCCGCCCAATCTTGGGCTACCCGTAACTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|10 : CTGGTATT-AAGCGCATTCC-CGT--AA--CT-G--CA--TA-CG--GGT---GCCCAATGA-TAGGCAG-ACGAAA-GTAC-GCGC-CGGCAATAT-TTGTTTTCT-TTT--T-ATCA-
gi|11 : caATGTTTGGAGTTTT--ATGACAATACTTT--GCGTT-CCAAATCATTCCATTTTTTT-TAAAAATAC--ACACTA-GACTATGAAGC-TATTgtgagcgaaaatagat
gi|12 : GCCGCGT--AA--CT-G--CAGTTA-CG--GGT--AGCCC----A-T-GGCAG-ACGAAA-GTAC-G-CCTTG--AATATAT
gi|13 : aCTGGTATG-AAGGCGATG---CGT--AA--CTGG--CAGTTA-CGGTGGT--GAGCTAAT-AGT-GGCAGA
gi|14 : caCTGATATT-AAGCCGAGGCC-CTT--AA--CA-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGC
gi|15 : tcaAG---------AATGATGCGT---AACTGCATA-----------GTA-G-C-AATGAGTGT--AACTGG-C-AAT-ACGGATACC
gi|16 : TAC-AAAA----GGTGTAG-TT--TCA--GTATC-AT--GGGACTTTT-
gi|17 : CTGGTATT-AAGCCGATGCC-CGT--At
gi|18 : tcaCTGGTATT-AAGCCGATGCC-CGT--A
gi|2 : tcaCTGATATT-AAGCCGAGGCC-CGTTAAA--CA-G--CA-TTAGCA--GGT--AGCATAA--G-T-GGCAGA-CGAAA-GTAC-AAGCTTG--AATATAGTTTT--GC-TTT--TTATCA-T-ACGA---TTA--AATAAATAAA-CCGTTAA--TTA----CCA-------ATACGGAC-AAACTTTGATTCAT--ACAGA-TTC-AG--TTAT------------------ATGTAT--TACGTGTC-TGGTTT--ATCT---GT-TTTAA-CGTATG----AAAAAAAAGAAGAGAGAAATGATGCGTTGTAAC-GCATA-----------TT--GGCGA-TGAGTGT--AACTGGGC-AATCACGGATACCCGTGTAATTTGCAAAC--ACGCTGGTTGTTTAC-AATA----GGTGTAG-TT--TCA--GTATCTGT--GGGACTTTT-GC-A-CATCTTATCTAGTGTATATCGATCAG-TAAC-TTTT-ATGTTTTA--TTCCAAAGAACAAACGTCATAA--ATTTAT-AGTA-CAGTTACTTCAACAGCTAGGATGGCAGAGGACAGCGGGGTGTCATT---CCAGTTACGGTTTATCCA----TCA--------ATTAGTTA--CGGGCAGCAATAGCGGCAG-TACACGCATCATCACTGGTGTCA-TTT-GGCGATGTTTGGAGTTTT--ATG-CGAATCTTTTGGTGTT-CCAAA-CATTCGAAATTCTA-TGAAAATGCAAACACTATGACTAAGAAGC-TATTTCAATAAACTAAATAAC-----AAAGAAAAC-AGAGAT-AATG-TCTAACCC-GATTCTGTGGCCAC----------G----CCGTATCTGCAGTTACGGGCAATCGGCTTAA
gi|3 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGCTA-aa
gi|3 : ttcaTT--T-GTCA-T-ACGA---T-A--AATAACTAAA-CTGTTAAATT--ATT-CCA-------ATACGGAC-GAACTTTGATT-------------------TGATTTGGTCTC---ATTCA-TATGTAT--TACGTGTC-TGGTTT--ATCC---GTGTTTAT-CGTATGGGAAAAAAACAG---------AATGATGCGT-GTAACTGCATAGTTGTCTATAATC--G-CGA-TCAGTGT--AACTGG-C-AAT-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTAC-AATA----GGTGTAG-TT--TCA--GTATT-AT--GGGACTTTTTGC-A-CAT-TTATCTAGTGTATATCAATCAG-TAAT-TTTT-ATGTTTTAGTTTTC-AAGAACAAACGTC---ATAATTTATA-GTA-CA-TTACTTCAACAGCTAGGATGGAAGAAGATAGC-GGGTATCAATT-CTCAGTTACGG-TTATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATATATAGCGGCAGTTACACGCATCATCACTGATGTCATTCT-GGCGACGTTTGGAGTTTT--ATGATGATACTTT--GCGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACACTA-GATTATGAAGC-TATTTCAATAAA-TATATAACAAAAGAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|4 : ttcactggtattaagccgatgcccgtaactgcagctagaa-CGT--AA--CT-GAGCAGTTA-CG--GGTTCA-CCCAAT-ACT-GGCAGGACGAAA-G-ACTG-GCTCG--AATATATTTTGTAGC-TTTTCT-ATCA-TAACGAC--T-A--AATCACTAAAGCTGTT--ATTT-ATT-CCAAGGAGGCATACGGAC--AACTTTGATTCAT--AGAGACTCC-AG--GTA-TTGGTCTTG--ATTC----TGTCTTATACGTGTC-TGGTTT--ATCCTGTGT-TCTAAGCGTATGAA--AAAAACAG----------ATGATGTGT-GTAACTGCATA-----------TTCCG-CG-ATGAGTGTAAAACTGG-CAAAT-ACGGATGCCC-T--AACTTGCAAACGGACGTTGGTTGTTTACGGAGAGGAGGGTGTAGTTT--TCAAGGTATC-ATTGGGGATTTTT-GCAA-TAT-TTATCTAGT--------ATCAGTTAACATTTTAATGTTTTAATTTTC-AAGAACAAACGTCT--A--ATTTATAAGTAGCA-TTACTTCAACAGCTAGG-TGGAAGAGGA-AGC-GG
gi|5 : atgTAAGTTAT-AAGAACAAACGTC---ATAATTTATA-GTA-CA-TTACTTCAACAGCTAGGGTGGAAGACGATAGC-GGGCATCATTT-CTCAGTTCCGG-TCATCCACATTTCAGAGAGTTCATTAGTTA--CGGGCATCAATAGCGGTAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGA----TT--GTGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACGCTA-AACTATGAAGC-TATTTCAAAAAA-TGAATAACAAAAGAAAAAAAACAAGGGATNAAT
gi|6 : atttctggcctcagGAGGACAGC-GGGTGTCATT--CTCAGTTACGG-TTATCCACAT-----------CATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGGTGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GTGTT-CCAAATCATT-CGAATTCTA-TGAAAATGC--ACACTA-GACTAAGAAGC-TATTTCAATAAA-TAAATAACAAAAG--AAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCC---------------ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|7 : CTGGTATTTAAGCCGATGCC-CGT--AA--AT-GT-CAGTTA-CG--GGTC-AGTCCAAT-A-T-GGCAG-ACGAAA-GTAC-G-GCTCG----TATA--TTTTTGCATTT--T-ATCA-T-ACGA---T----AATAACT-AAACTGTGAAA-TTAATTGCCA-------TTAAGGACAAAAC--TGATTCAT--AGAGA-TTCAAG--TTA-TTGGTCCCTCAATACATTATG-AT--CACGTGTC-TGGTTTACATCC---GT-GTTAA-CGTATG----AAGAAgt
gi|8 : ataccaTTT-GC-A-CAT-TTATCTAGTGTATATCGATCAA-TAAC-TTTT-ATGTTTTAATTTTC-AAGGACAAACGTCAA-A--ATTTAT-AGTA-AA-TTACTTCAACAGCTAGGATGGAGGAGGATAGC-GGGTATCA-TTTCTCAGTTACGG-ACATCCACATTTCAGAAAATTCATTAGTTA--CGGGCATaaaac
gi|9 : CT-CGT--AATACT-G--CAGTTA-CG--GGT--AGTCCAA--A-T-GGCAGA-CGAAAAGTAC-T-GCTTG--AA-ATATATGTTTGC-TTT--T-ATCA-T-ACGAAGGT-ACTAATAACTAAA-CTGTGAAGTT--ATT-CCA-------ATACGGAC-AAACCTTGATTCATGCAGAAA--TC-AGTATTATTacacgcagtacataca
Alignments
lowQualScore : 11 1111 11 111 11 33333333 111 2222222 1111 2222222222 11 11 111 1111 11 333333333 444444444444444 2 11 11 11 1111 11 11 11 1 222222222 1 11 1 1 1 1 9999999999999999 1
lowQualScore : 4 3 44 55 4 99 4 66 00 0000 4 66 5 333 77 1 6 33 5 6 11111111 6 88 333 6 1111111 6 5 99 6666 99 5 0 3333333333 0 11 8 11 444 8 8 7777 11 222222222 0 8 0 666666666666666 8 0 8 11 0 8 8 8 55 33 33 0 8 1 7777 11 8 11 8 11 6 6 8 8 8 8 1 6 777777777 5 99 6 1 2 5 44 6 3 6666 1 99 0 0 8 99 3 99 0 6 6 6 99 6 6 0 8 0 0 0 0 5 3 3 2222222222222222 3
lowQualScore : . . .. .. . .. . .. .. .... . .. . ... .. . . .. . . ........ . .. ... . ....... . . .. .... .. . . .......... . .. . .. ... . . .... .. ......... . . . ............... . . . .. . . . . .. .. .. . . . .... .. . .. . .. . . . . . . . . ......... . .. . . . . .. . . .... . .. . . . .. . .. . . . . .. . . . . . . . . . . . ................ .
lowQualScore : 4 3 66 55 0 55 0 11 66 6666 4 22 7 000 99 4 7 66 7 7 00000000 7 88 777 7 7777777 7 7 22 3333 22 6 6 8888888888 8 00 0 00 000 0 0 0000 00 000000000 8 0 8 888888888888888 0 4 0 00 8 0 0 0 00 88 88 8 0 0 0000 00 0 00 0 00 7 0 0 0 0 0 7 7 888888888 5 22 7 7 3 7 00 7 2 2222 0 22 8 8 0 22 5 22 7 7 2 7 22 7 7 8 0 8 8 8 0 8 3 3 7777777777777777 3
consensus : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTC---A--A--TTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
Reference ( family-5663 ) : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTC---A--A--TTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|1 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAAAGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCAATA-CGA---T-AC-AATAACTAA--CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACGTTGATTCAT--AGAGAT-C-AG--TTATTTGGGCTC---ATTCA-TATGTATTA--CGTGTCCTGGTTT--ATCC---GG-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGTTAA--C-GG-CAA-T-ACGGATACC-GT--AACTTGCAAAC--ACGCTGGTTGTT-ACA-ATAGC----TGTAGTTAAT-CA--GTATC-AT--GGGACTTTT-GCAGCAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAAGA-----------A--A--TTCATAAGTA--A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GG-CATCATTTTCTCAGTTACGG-GCATCCACATTTC-GAAAGTTCATTAGTTATGCGGGCATCAATAGCGACAGTTACACGCAT-ATCACTAATGTCATTTTTGGCGATGTTTGGAGTTTTTTATGACGATATTTT--GTGTTTCCAAATCATTCCCAATTTTACTAAAAATAC--ACACTA-GACTATGAAGCATATT-CAATAAC-TAAACA-CAAAAGAAAAAAAAC-AGAGATAAATGACCTAACCCAGAATCTGTGGCCGCCCAATCTTGGGCTACCCGTAACTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|10 : CTGGTATT-AAGCGCATTCC-CGT--AA--CT-G--CA--TA-CG--GGT---GCCCAATGA-TAGGCAG-ACGAAA-GTAC-GCGC-CGGCAATAT-TTGTTTTCT-TTTT--ATCA-
gi|11 : caATGTTTGGAGTTTT--ATGACAATACTTT--GCGTT-CCAAATCATTCCATTTTTTT-TAAAAATAC--ACACTA-GACTATGAAGC-TATTgtgagcgaaaatagat
gi|12 : GCCGCGT--AA--CT-G--CAGTTA-CG--GGT--AGCCC----A-T-GGCAG-ACGAAA-GTAC-G-CCTTG--AATATAT
gi|13 : aCTGGTATG-AAGGCGATG---CGT--AA--CTGG--CAGTTA-CGGTGGT--GAGCTAAT-AGT-GGCAGA
gi|14 : caCTGATATT-AAGCCGAGGCC-CTT--AA--CA-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGC
gi|15 : tcaAG---------AATGATGCGT---AACTGCATA-----------GTA-G-C-AATGAGTGT-AA--CTGG-CAA-T-ACGGATACC
gi|16 : TACA-AAAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-
gi|17 : CTGGTATT-AAGCCGATGCC-CGT--At
gi|18 : tcaCTGGTATT-AAGCCGATGCC-CGT--A
gi|2 : tcaCTGATATT-AAGCCGAGGCC-CGTTAAA--CA-G--CA-TTAGCA--GGT--AGCATAA--G-T-GGCAGA-CGAAA-GTAC-AAGCTTG--AATATAGTTTT--GC-TTTTT-ATCA-TA-CGA---TTA--AATAAATAAA-CCGTTAA--TTA----CCAA-------TACGGAC-AAACTTTGATTCAT--ACAGATTC-AG--TTAT------------------ATGTATTA--CGTGTC-TGGTTT--ATCT---GT-TTTAA-CGTATG----AAAAA--AAAGAAGAGAGAAATGATGCGTTGTAAC-GCATA-----------TT--GGCGA-TGAGTGT-AA--CTGGGCAA-TCACGGATACCCGTGTAATTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATCTGT--GGGACTTTT-GCA-CATCTTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTA--TTCCAAAGAACAAACGTCATAA--A--TTTAT-AGTA-CAGTTACTTCAACAGCTAGGATGGCAGAGGACAGCGGGGTGTCATT---CCAGTTACGGTTTATCCA----TCA--------ATTAGTTA--CGGGCAGCAATAGCGGCAG-TACACGCATCATCACTGGTGTCA-TTT-GGCGATGTTTGGAGTTTT--ATG-CGAATCTTTTGGTGTT-CCAAA-CATTCGAAATTCTA-TGAAAATGCAAACACTATGACTAAGAAGC-TATTTCAATAAACTAAATAAC-----AAAGAAAAC-AGAGAT-AATG-TCTAACCC-GATTCTGTGGCCAC----------G----CCGTATCTGCAGTTACGGGCAATCGGCTTAA
gi|3 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGCTA-aa
gi|3 : ttcaTTT--GTCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATT--ATT-CCAA-------TACGGAC-GAACTTTGATT------------------TGATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GTGTTTAT-CGTATGGGAAAAAAA--CAG---------AATGATGCGT-GTAACTGCATAGTTGTCTATAATC--G-CGA-TCAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATT-AT--GGGACTTTTTGCA-CAT-TTATCTAGTGTATATCAATCAGT-AAT-TTTTA-TGTTTTAGTTTTC-AAGAACAAACGTC---ATAA--TTTATA-GTA-CA-TTACTTCAACAGCTAGGATGGAAGAAGATAGC-GGGTATCAATT-CTCAGTTACGG-TTATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATATATAGCGGCAGTTACACGCATCATCACTGATGTCATTCT-GGCGACGTTTGGAGTTTT--ATGATGATACTTT--GCGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACACTA-GATTATGAAGC-TATTTCAATAAA-TATATAACAAAAGAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|4 : ttcactggtattaagccgatgcccgtaactgcagctagaa-CGT--AA--CT-GAGCAGTTA-CG--GGTTCA-CCCAAT-ACT-GGCAGGACGAAA-G-ACTG-GCTCG--AATATATTTTGTAGC-TTTTCTATCA-TAACGAC--T-A--AATCACTAAAGCTGTTA--TTTA-TT-CCAAGGAGGCATACGGAC-AA-CTTTGATTCAT--AGAGACTCCAG--GTATT-GGTCTTG--ATTC----TGTCTTATACGTGTC-TGGTTT--ATCCTGTGT-TCTAAGCGTATG----AAAAAAACAG---------A-TGATGTGT-GTAACTGCATA-----------TTCCG-CGA-TGAGTGT-AAAACTGG-CAAAT-ACGGATGCCC-T--AACTTGCAAACGGACGTTGGTTGTTTACGGAGAGGAGGGTGTAGTT--TTCAAGGTATC-ATTGGGGATTTTT-GCAATAT-TTATCTAGT--------ATCAGTTAACATTTTAATGTTTTAATTTTC-AAGAACAAACGTCT--A--A--TTTATAAGTAGCA-TTACTTCAACAGCTAGG-TGGAAGAGGA-AGC-GG
gi|5 : atgTAAGTTAT-AAGAACAAACGTC---ATAA--TTTATA-GTA-CA-TTACTTCAACAGCTAGGGTGGAAGACGATAGC-GGGCATCATTT-CTCAGTTCCGG-TCATCCACATTTCAGAGAGTTCATTAGTTA--CGGGCATCAATAGCGGTAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGA----TT--GTGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACGCTA-AACTATGAAGC-TATTTCAAAAAA-TGAATAACAAAAGAAAAAAAACAAGGGATNAAT
gi|6 : atttctggcctcagGAGGACAGC-GGGTGTCATT--CTCAGTTACGG-TTATCCACAT-----------CATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGGTGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GTGTT-CCAAATCATT-CGAATTCTA-TGAAAATGC--ACACTA-GACTAAGAAGC-TATTTCAATAAA-TAAATAACAAAAG--AAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCC---------------ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|7 : CTGGTATTTAAGCCGATGCC-CGT--AA--AT-GT-CAGTTA-CG--GGTC-AGTCCAAT-A-T-GGCAG-ACGAAA-GTAC-G-GCTCG----TATA--TTTTTGCATTTT--ATCA-TA-CGA---T----AATAACTAAA-CTGTGAAA-TTAATTGCCAT-------TAAGGACAAAAC--TGATTCAT--AGAGATTCAAG--TTA-TTGGTCCCTCAATACATTATG-ATCA--CGTGTC-TGGTTTACATCC---GT-GTTAA-CGTATG----AAGAA--gt
gi|8 : ataccaTTT-GCA-CAT-TTATCTAGTGTATATCGATCAAT-AAC-TTTTA-TGTTTTAATTTTC-AAGGACAAACGTC---A--AAATTTATA-GTA-AA-TTACTTCAACAGCTAGGATGGAGGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-ACATCCACATTTCAGAAAATTCATTAGTTA--CGGGCATaaaac
gi|9 : CT-CGT--AATACT-G--CAGTTA-CG--GGT--AGTCCAA--A-T-GGCAGA-CGAAAAGTAC-T-GCTTG--AA-ATATATGTTTGC-TTTT--ATCA-TA-CGAAGGT-ACTAATAACTAAA-CTGTGAAGTT--ATT-CCAA-------TACGGAC-AAACCTTGATTCATGCAGAAA-TC-AGTATTATTacacgcagtacataca
Alignments
lowQualScore : 11 1111 11 111 11 33333333 111 2222222 1111 2222222222 11 11 111 1111 11 333333333 444444444444444 2 11 11 11 1111 11 11 11 1 222222222 1 11 1 1 1 1 9999999999999999 1
lowQualScore : 4 3 44 55 4 99 4 66 00 0000 4 66 5 333 77 1 6 33 5 6 11111111 6 88 333 6 1111111 6 5 99 6666 99 5 0 3333333333 0 11 8 11 444 8 8 7777 11 222222222 0 8 0 666666666666666 8 0 8 11 0 8 8 8 55 33 33 0 8 1 7777 11 8 11 8 11 6 6 8 8 8 8 1 6 777777777 5 99 6 1 2 5 44 6 3 6666 1 99 0 0 8 99 3 99 0 6 6 6 99 6 6 0 8 0 0 0 0 5 3 3 2222222222222222 3
lowQualScore : . . .. .. . .. . .. .. .... . .. . ... .. . . .. . . ........ . .. ... . ....... . . .. .... .. . . .......... . .. . .. ... . . .... .. ......... . . . ............... . . . .. . . . . .. .. .. . . . .... .. . .. . .. . . . . . . . . ......... . .. . . . . .. . . .... . .. . . . .. . .. . . . . .. . . . . . . . . . . . ................ .
lowQualScore : 4 3 66 55 0 55 0 11 66 6666 4 22 7 000 99 4 7 66 7 7 00000000 7 88 777 7 7777777 7 7 22 3333 22 6 6 8888888888 8 00 0 00 000 0 0 0000 00 000000000 8 0 8 888888888888888 0 4 0 00 8 0 0 0 00 88 88 8 0 0 0000 00 0 00 0 00 7 0 0 0 0 0 7 7 888888888 5 22 7 7 3 7 00 7 2 2222 0 22 8 8 0 22 5 22 7 7 2 7 22 7 7 8 0 8 8 8 0 8 3 3 7777777777777777 3
consensus : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTC---A--A--TTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
Reference ( family-5663 ) : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTC---A--A--TTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|1 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAAAGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCAATA-CGA---T-AC-AATAACTAA--CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACGTTGATTCAT--AGAGAT-C-AG--TTATTTGGGCTC---ATTCA-TATGTATTA--CGTGTCCTGGTTT--ATCC---GG-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGTTAA--C-GG-CAA-T-ACGGATACC-GT--AACTTGCAAAC--ACGCTGGTTGTT-ACA-ATAGC----TGTAGTTAAT-CA--GTATC-AT--GGGACTTTT-GCAGCAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAAGA-----------A--A--TTCATAAGTA--A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GG-CATCATTTTCTCAGTTACGG-GCATCCACATTTC-GAAAGTTCATTAGTTATGCGGGCATCAATAGCGACAGTTACACGCAT-ATCACTAATGTCATTTTTGGCGATGTTTGGAGTTTTTTATGACGATATTTT--GTGTTTCCAAATCATTCCCAATTTTACTAAAAATAC--ACACTA-GACTATGAAGCATATT-CAATAAC-TAAACA-CAAAAGAAAAAAAAC-AGAGATAAATGACCTAACCCAGAATCTGTGGCCGCCCAATCTTGGGCTACCCGTAACTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|10 : CTGGTATT-AAGCGCATTCC-CGT--AA--CT-G--CA--TA-CG--GGT---GCCCAATGA-TAGGCAG-ACGAAA-GTAC-GCGC-CGGCAATAT-TTGTTTTCT-TTTT--ATCA-
gi|11 : caATGTTTGGAGTTTT--ATGACAATACTTT--GCGTT-CCAAATCATTCCATTTTTTT-TAAAAATAC--ACACTA-GACTATGAAGC-TATTgtgagcgaaaatagat
gi|12 : GCCGCGT--AA--CT-G--CAGTTA-CG--GGT--AGCCC----A-T-GGCAG-ACGAAA-GTAC-G-CCTTG--AATATAT
gi|13 : aCTGGTATG-AAGGCGATG---CGT--AA--CTGG--CAGTTA-CGGTGGT--GAGCTAAT-AGT-GGCAGA
gi|14 : caCTGATATT-AAGCCGAGGCC-CTT--AA--CA-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGC
gi|15 : tcaAG---------AATGATGCGT---AACTGCATA-----------GTA-G-C-AATGAGTGT-AA--CTGG-CAA-T-ACGGATACC
gi|16 : TACA-AAAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-
gi|17 : CTGGTATT-AAGCCGATGCC-CGT--At
gi|18 : tcaCTGGTATT-AAGCCGATGCC-CGT--A
gi|2 : tcaCTGATATT-AAGCCGAGGCC-CGTTAAA--CA-G--CA-TTAGCA--GGT--AGCATAA--G-T-GGCAGA-CGAAA-GTAC-AAGCTTG--AATATAGTTTT--GC-TTTTT-ATCA-TA-CGA---TTA--AATAAATAAA-CCGTTAA--TTA----CCAA-------TACGGAC-AAACTTTGATTCAT--ACAGATTC-AG--TTAT------------------ATGTATTA--CGTGTC-TGGTTT--ATCT---GT-TTTAA-CGTATG----AAAAA--AAAGAAGAGAGAAATGATGCGTTGTAAC-GCATA-----------TT--GGCGA-TGAGTGT-AA--CTGGGCAA-TCACGGATACCCGTGTAATTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATCTGT--GGGACTTTT-GCA-CATCTTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTA--TTCCAAAGAACAAACGTCATAA--A--TTTAT-AGTA-CAGTTACTTCAACAGCTAGGATGGCAGAGGACAGCGGGGTGTCATT---CCAGTTACGGTTTATCCA----TCA--------ATTAGTTA--CGGGCAGCAATAGCGGCAG-TACACGCATCATCACTGGTGTCA-TTT-GGCGATGTTTGGAGTTTT--ATG-CGAATCTTTTGGTGTT-CCAAA-CATTCGAAATTCTA-TGAAAATGCAAACACTATGACTAAGAAGC-TATTTCAATAAACTAAATAAC-----AAAGAAAAC-AGAGAT-AATG-TCTAACCC-GATTCTGTGGCCAC----------G----CCGTATCTGCAGTTACGGGCAATCGGCTTAA
gi|3 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGCTA-aa
gi|3 : ttcaTTT--GTCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATT--ATT-CCAA-------TACGGAC-GAACTTTGATT------------------TGATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GTGTTTAT-CGTATGGGAAAAAAA--CAG---------AATGATGCGT-GTAACTGCATAGTTGTCTATAATC--G-CGA-TCAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATT-AT--GGGACTTTTTGCA-CAT-TTATCTAGTGTATATCAATCAGT-AAT-TTTTA-TGTTTTAGTTTTC-AAGAACAAACGTC---ATAA--TTTATA-GTA-CA-TTACTTCAACAGCTAGGATGGAAGAAGATAGC-GGGTATCAATT-CTCAGTTACGG-TTATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATATATAGCGGCAGTTACACGCATCATCACTGATGTCATTCT-GGCGACGTTTGGAGTTTT--ATGATGATACTTT--GCGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACACTA-GATTATGAAGC-TATTTCAATAAA-TATATAACAAAAGAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|4 : ttcactggtattaagccgatgcccgtaactgcagctagaa-CGT--AA--CT-GAGCAGTTA-CG--GGTTCA-CCCAAT-ACT-GGCAGGACGAAA-G-ACTG-GCTCG--AATATATTTTGTAGC-TTTTCTATCA-TAACGAC--T-A--AATCACTAAAGCTGTTA--TTTA-TT-CCAAGGAGGCATACGGAC-AA-CTTTGATTCAT--AGAGACTCCAG--GTATT-GGTCTTG--ATTC----TGTCTTATACGTGTC-TGGTTT--ATCCTGTGT-TCTAAGCGTATG----AAAAAAACAG---------A-TGATGTGT-GTAACTGCATA-----------TTCCG-CGA-TGAGTGT-AAAACTGG-CAAAT-ACGGATGCCC-T--AACTTGCAAACGGACGTTGGTTGTTTACGGAGAGGAGGGTGTAGTT--TTCAAGGTATC-ATTGGGGATTTTT-GCAATAT-TTATCTAGT--------ATCAGTTAACATTTTAATGTTTTAATTTTC-AAGAACAAACGTCT--A--A--TTTATAAGTAGCA-TTACTTCAACAGCTAGG-TGGAAGAGGA-AGC-GG
gi|5 : atgTAAGTTAT-AAGAACAAACGTC---ATAA--TTTATA-GTA-CA-TTACTTCAACAGCTAGGGTGGAAGACGATAGC-GGGCATCATTT-CTCAGTTCCGG-TCATCCACATTTCAGAGAGTTCATTAGTTA--CGGGCATCAATAGCGGTAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGA----TT--GTGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACGCTA-AACTATGAAGC-TATTTCAAAAAA-TGAATAACAAAAGAAAAAAAACAAGGGATNAAT
gi|6 : atttctggcctcagGAGGACAGC-GGGTGTCATT--CTCAGTTACGG-TTATCCACAT-----------CATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGGTGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GTGTT-CCAAATCATT-CGAATTCTA-TGAAAATGC--ACACTA-GACTAAGAAGC-TATTTCAATAAA-TAAATAACAAAAG--AAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCC---------------ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|7 : CTGGTATTTAAGCCGATGCC-CGT--AA--AT-GT-CAGTTA-CG--GGTC-AGTCCAAT-A-T-GGCAG-ACGAAA-GTAC-G-GCTCG----TATA--TTTTTGCATTTT--ATCA-TA-CGA---T----AATAACTAAA-CTGTGAAA-TTAATTGCCAT-------TAAGGACAAAAC--TGATTCAT--AGAGATTCAAG--TTA-TTGGTCCCTCAATACATTATG-ATCA--CGTGTC-TGGTTTACATCC---GT-GTTAA-CGTATG----AAGAA--gt
gi|8 : ataccaTTT-GCA-CAT-TTATCTAGTGTATATCGATCAAT-AAC-TTTTA-TGTTTTAATTTTC-AAGGACAAACGTC---A--AAATTTATA-GTA-AA-TTACTTCAACAGCTAGGATGGAGGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-ACATCCACATTTCAGAAAATTCATTAGTTA--CGGGCATaaaac
gi|9 : CT-CGT--AATACT-G--CAGTTA-CG--GGT--AGTCCAA--A-T-GGCAGA-CGAAAAGTAC-T-GCTTG--AA-ATATATGTTTGC-TTTT--ATCA-TA-CGAAGGT-ACTAATAACTAAA-CTGTGAAGTT--ATT-CCAA-------TACGGAC-AAACCTTGATTCATGCAGAAA-TC-AGTATTATTacacgcagtacataca
blockSeqs : T G TA TA G AG G GT TC TGA A GA A GC GC T A CT . A AGGTACT G AT TAA G GGAGGCA A T GC CTCC TA T TCAATACATT TA . AC TGT G G GGAA AA GAAGAGAGA T GTTGTCTATAATC G A . AA G A C CG GT GG G A AGGG . T AG T TG T A C T A A G A ATAAA A GC G A C G T T T AGAA G . . . T TG . A . AA T . C A N . . ACG A
blockSeqs : . . . . . T . . C TAG . A . AA . T . T . . TTA . GT TA . . . T . TTCA . T ATTCAT . . . . . . . . . . TTCC . . . . . . . CG . . . T . . . . . . . . . . . . A . ATAA A C . A T . T . T AGAG G . . . A . . A . . . . . . A . . A .
blockSeqs : . . . . . . . . . TAC . A . TG . G . . . . CTA . T TA . . . T . TTC . . GATTC . . . . . . . . . . GTA . . . . . . . C . . . T . . . . . . . . . . . . A . ATAA . C . G T . T . T AGAA A . . . T . . G . . . . . . .
blockSeqs : . . . . . . . . . TA . A . G . T . . . . TA . A A . . . C . TC . . . . . . . . . . . . . TT . . . . . . . . G . . . . . . . . . . . . A . AAAA . C . A C . . . . A . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . TA . A . G . T . . . . T . . A . . . . . . . . . . TAA . A . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . A . T . . . . . .
blockSeqs : . . . . . . . . . G .
blockSeqs : . . . . . . . . . A .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : TA** A* G** GT TA* TTC* ATC******* TT************* ** ATAA***** C* T* AGAA ** **
originalCons : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAGAACGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTC---ATTCA-TATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTC---A--A--TTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
finalCons : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAATA--T-GGCAGA-CGAAA-GTACG--GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAGTTTA-TT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCTCATC-------ATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATATT-------------G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTCATAA-----TTTATAAGTAC-A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
Alignments
lowQualScore : 11 1111 111 11 33333333 1 1 2222222 1111 555555555555555 11 11 111 1111 11 333333333 444444444444444 2 11 11 11 1111 11 11 11 1 1 11 1 1 1 1 9999999999999999 1
lowQualScore : 4 3 44 55 4 99 4 66 00 3333 4 5 5 5 333 77 1 6 33 5 6 11111111 6 0 1 7777 1111111 6 5 99 6666 99 5 0 999999999999999 0 11 8 11 444 8 8 7777 11 222222222 0 8 0 666666666666666 8 0 8 11 0 8 8 8 55 33 33 0 8 1 7777 11 8 11 8 11 6 6 8 8 8 8 1 6 999 5 99 6 1 2 5 44 6 3 6666 1 99 0 0 8 99 3 99 0 6 6 6 99 6 6 0 8 0 0 0 0 5 3 3 2222222222222222 3
lowQualScore : . . .. .. . .. . .. .. .... . . . . ... .. . . .. . . ........ . . . .... ....... . . .. .... .. . . ............... . .. . .. ... . . .... .. ......... . . . ............... . . . .. . . . . .. .. .. . . . .... .. . .. . .. . . . . . . . . ... . .. . . . . .. . . .... . .. . . . .. . .. . . . . .. . . . . . . . . . . . ................ .
lowQualScore : 4 3 66 55 0 55 0 11 66 2222 4 0 7 7 000 99 4 7 66 7 7 00000000 7 5 7 5555 7777777 7 7 22 3333 22 6 6 666666666666666 8 00 0 00 000 0 0 0000 00 000000000 8 0 8 888888888888888 0 4 0 00 8 0 0 0 00 88 88 8 0 0 0000 00 0 00 0 00 7 0 0 0 0 0 7 7 222 5 22 7 7 3 7 00 7 2 2222 0 22 8 8 0 22 5 22 7 7 2 7 22 7 7 8 0 8 8 8 0 8 3 3 7777777777777777 3
consensus : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAG-AC-GAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATTTA-TT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCT-------C-ATTCATATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTCAT-AATTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
Reference ( family-5663 ) : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAG-AC-GAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAGTTTA-TT-CCAA-------TACGGAC-AAACTTTGATTCAT--AGAGATTC-AG--TTATTTGGTCT-------C-ATC---ATGTATTA--CGTGTC-TGGTTT--ATCC---GT-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-GCA-CAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAGAACAAACGTCAT-AATTTATAAGTA-CA-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-TCATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GCGTT-CCAAATCATTCCGAATTTTA-TAAAAATAC--ACACTA-GACTATGAAGC-TATTTCAATAAA-TAAATAACAAAAGAAAAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCCGC----------G--ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|1 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGCAG-AAAGAAA-GTAC-G-GCTCG--AATATATTTTTTTGC-TTTT--ATCAATA-CGA---T-AC-AATAACTAA--CTGTTAAATTTAATT-CCAA-------TACGGAC-AAACGTTGATTCAT--AGAGAT-C-AG--TTATTTGGGCT-------C-ATTCATATGTATTA--CGTGTCCTGGTTT--ATCC---GG-TTTAA-CGTATG----AAAAA--CAG---------AATGATGCGT-GTAACTGCATA-----------TT--G-CGAATGAGTGTTAA--C-GG-CAA-T-ACGGATACC-GT--AACTTGCAAAC--ACGCTGGTTGTT-ACA-ATAGC----TGTAGTTAAT-CA--GTATC-AT--GGGACTTTT-GCAGCAT-TTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTAATTTTC-AAAGA-----------AATTCATAAGTA--A-TTACTTCAACAGCTAGGATGGAAGAGGATAGC-GG-CATCATTTTCTCAGTTACGG-GCATCCACATTTC-GAAAGTTCATTAGTTATGCGGGCATCAATAGCGACAGTTACACGCAT-ATCACTAATGTCATTTTTGGCGATGTTTGGAGTTTTTTATGACGATATTTT--GTGTTTCCAAATCATTCCCAATTTTACTAAAAATAC--ACACTA-GACTATGAAGCATATT-CAATAAC-TAAACA-CAAAAGAAAAAAAAC-AGAGATAAATGACCTAACCCAGAATCTGTGGCCGCCCAATCTTGGGCTACCCGTAACTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|10 : CTGGTATT-AAGCGCATTCC-CGT--AA--CT-G--CA--TA-CG--GGT---GCCCAATGA-TAGGCAG-AC-GAAA-GTAC-GCGC-CGGCAATAT-TTGTTTTCT-TTTT--ATCA-
gi|11 : caATGTTTGGAGTTTT--ATGACAATACTTT--GCGTT-CCAAATCATTCCATTTTTTT-TAAAAATAC--ACACTA-GACTATGAAGC-TATTgtgagcgaaaatagat
gi|12 : GCCGCGT--AA--CT-G--CAGTTA-CG--GGT--AGCCCA-----T-GGCAG-AC-GAAA-GTAC-G-CCTTG--AATATAT
gi|13 : aCTGGTATG-AAGGCGATG---CGT--AA--CTGG--CAGTTA-CGGTGGT--GAGCTAAT-AGT-GGCAG-A
gi|14 : caCTGATATT-AAGCCGAGGCC-CTT--AA--CA-G--CAGTTA-CG--GGT--AGCCCAAT-A-T-GGC
gi|15 : tcaAG---------AATGATGCGT---AACTGCATA-----------GTA-G-C-AATGAGTGT-AA--CTGG-CAA-T-ACGGATACC
gi|16 : TACA-AAAGG----TGTAGTT--T-CA--GTATC-AT--GGGACTTTT-
gi|17 : CTGGTATT-AAGCCGATGCC-CGT--At
gi|18 : tcaCTGGTATT-AAGCCGATGCC-CGT--A
gi|2 : tcaCTGATATT-AAGCCGAGGCC-CGTTAAA--CA-G--CA-TTAGCA--GGT--AGCATAA--G-T-GGCAG-AC-GAAA-GTAC-AAGCTTG--AATATAGTTTT--GC-TTTTT-ATCA-TA-CGA---TTA--AATAAATAAA-CCGTTAA--TTA----CCAA-------TACGGAC-AAACTTTGATTCAT--ACAGATTC-AG--TTAT----------------------ATGTATTA--CGTGTC-TGGTTT--ATCT---GT-TTTAA-CGTATG----AAAAA--AAAGAAGAGAGAAATGATGCGTTGTAAC-GCATA-----------TT--GGCGA-TGAGTGT-AA--CTGGGCAA-TCACGGATACCCGTGTAATTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATCTGT--GGGACTTTT-GCA-CATCTTATCTAGTGTATATCGATCAGT-AAC-TTTTA-TGTTTTA--TTCCAAAGAACAAACGTCATAAATTTAT-AGTA-CAGTTACTTCAACAGCTAGGATGGCAGAGGACAGCGGGGTGTCATT---CCAGTTACGGTTTATCCA----TCA--------ATTAGTTA--CGGGCAGCAATAGCGGCAG-TACACGCATCATCACTGGTGTCA-TTT-GGCGATGTTTGGAGTTTT--ATG-CGAATCTTTTGGTGTT-CCAAA-CATTCGAAATTCTA-TGAAAATGCAAACACTATGACTAAGAAGC-TATTTCAATAAACTAAATAAC-----AAAGAAAAC-AGAGAT-AATG-TCTAACCC-GATTCTGTGGCCAC----------G----CCGTATCTGCAGTTACGGGCAATCGGCTTAA
gi|3 : CTGGTATT-AAGCCGATGCC-CGT--AA--CT-G--CAGCTA-aa
gi|3 : ttcaTTT--GTCA-TA-CGA---T-A--AATAACTAAA-CTGTTAAATT-A-TT-CCAA-------TACGGAC-GAACTTTGATT------------------TGATTTGGTCT-------C-ATTCATATGTATTA--CGTGTC-TGGTTT--ATCC---GTGTTTAT-CGTATGGGAAAAAAA--CAG---------AATGATGCGT-GTAACTGCATAGTTGTCTATAATC--G-CGA-TCAGTGT-AA--CTGG-CAA-T-ACGGATACCCGT--AACTTGCAAAC--ACGCTGGTTGTTTACA-ATAGG----TGTAGTT--T-CA--GTATT-AT--GGGACTTTTTGCA-CAT-TTATCTAGTGTATATCAATCAGT-AAT-TTTTA-TGTTTTAGTTTTC-AAGAACAAACGTCAT-AATTTATA-GTA-CA-TTACTTCAACAGCTAGGATGGAAGAAGATAGC-GGGTATCAATT-CTCAGTTACGG-TTATCCACATTTCAGAAAGTTCATTAGTTA--CGGGCATATATAGCGGCAGTTACACGCATCATCACTGATGTCATTCT-GGCGACGTTTGGAGTTTT--ATGATGATACTTT--GCGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACACTA-GATTATGAAGC-TATTTCAATAAA-TATATAACAAAAGAgaatttgtcatacgataaataactaaactgttaaattattccaatacggacgaactttgatttgatttggtctcattcatatgtattacgtgtctggtttatccgtgtttatcgtatgggaaaaaaacagaatgatgcgtgtaactgcatagttgtctataatcgcgatcagtgtaactggcaatacggatacccgtaacttgcaaacacgctggttgtttacaataggtgtagtttcagtattatgggactttttgcacatttatctagtgtatatcaatcagtaatttttatgttttagttttcaagaacaaacgtcataatttatagtacattacttcaacagctaggatggaagaagatagcgggtatcaattctcagttacggttatccacatttcagaaagttcattagttacgggcatatatagcggcagttacacgcatcatcactgatgtcattctggcgacgtttggagttttatgatgatactttgcgttccaaatcattccaattttataaaaatacacactagattatgaagctatttcaataaatatataacaaaaga
gi|4 : ttcactggtattaagccgatgcccgtaactgcagctagaa-CGT--AA--CT-GAGCAGTTA-CG--GGTTCA-CCCAAT-ACT-GGCAGGAC-GAAA-G-ACTG-GCTCG--AATATATTTTGTAGC-TTTTCTATCA-TAACGAC--T-A--AATCACTAAAGCTGTTA--TTTA-TT-CCAAGGAGGCATACGGAC-AA-CTTTGATTCAT--AGAGACTCCAG--GTATT-GGTCT-------TGATT---CTGTCTTATACGTGTC-TGGTTT--ATCCTGTGT-TCTAAGCGTATG----AAAAAAACAG---------A-TGATGTGT-GTAACTGCATA-----------TTCCG-CGA-TGAGTGT-AAAACTGG-CAAAT-ACGGATGCCC-T--AACTTGCAAACGGACGTTGGTTGTTTACGGAGAGGAGGGTGTAGTT--TTCAAGGTATC-ATTGGGGATTTTT-GCAATAT-TTATCTAGT--------ATCAGTTAACATTTTAATGTTTTAATTTTC-AAGAACAAACGTC-T-AATTTATAAGTAGCA-TTACTTCAACAGCTAGG-TGGAAGAGGA-AGC-GG
gi|5 : atgTAAGTTAT-AAGAACAAACGTCAT-AATTTATA-GTA-CA-TTACTTCAACAGCTAGGGTGGAAGACGATAGC-GGGCATCATTT-CTCAGTTCCGG-TCATCCACATTTCAGAGAGTTCATTAGTTA--CGGGCATCAATAGCGGTAGTTACACGCATCATCACTGATGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGA----TT--GTGTT-CCAAATCATTCC-AATTTTA-TAAAAATAC--ACGCTA-AACTATGAAGC-TATTTCAAAAAA-TGAATAACAAAAGAAAAAAAACAAGGGATNAAT
gi|6 : atttctggcctcagGAGGACAGC-GGGTGTCATT--CTCAGTTACGG-TTATCCACAT-----------CATTAGTTA--CGGGCATCAATAGCGGCAGTTACACGCATCATCACTGGTGTCATTTT-GGCGATGTTTGGAGTTTT--ATGACGATACTTT--GTGTT-CCAAATCATT-CGAATTCTA-TGAAAATGC--ACACTA-GACTAAGAAGC-TATTTCAATAAA-TAAATAACAAAAG--AAAAAAC-AGAGATAAATG-TCTAACCC-GATTCTGTGGCC---------------ACCCGTATCTGCAGTTACGGGC-ATCGGCTTAATACCA
gi|7 : CTGGTATTTAAGCCGATGCC-CGT--AA--AT-GT-CAGTTA-CG--GGTC-AGTCCAAT-A-T-GGCAG-AC-GAAA-GTAC-G-GCTCG----TATA--TTTTTGCATTTT--ATCA-TA-CGA---T----AATAACTAAA-CTGTGAAATTAA-TTGCCAT-------TAAGGACAAAAC--TGATTCAT--AGAGATTCAAG--TTA-TTGGTCCCTCAATAC-ATT---ATG-ATCA--CGTGTC-TGGTTTACATCC---GT-GTTAA-CGTATG----AAGAA--gt
gi|8 : ataccaTTT-GCA-CAT-TTATCTAGTGTATATCGATCAAT-AAC-TTTTA-TGTTTTAATTTTC-AAGGACAAACGTCAA-AATTTATA-GTA-AA-TTACTTCAACAGCTAGGATGGAGGAGGATAGC-GGGTATCATTT-CTCAGTTACGG-ACATCCACATTTCAGAAAATTCATTAGTTA--CGGGCATaaaac
gi|9 : CT-CGT--AATACT-G--CAGTTA-CG--GGT--AGTCCAA--A-T-GGCAG-AC-GAAAAGTAC-T-GCTTG--AA-ATATATGTTTGC-TTTT--ATCA-TA-CGAAGGT-ACTAATAACTAAA-CTGTGAAGTT-A-TT-CCAA-------TACGGAC-AAACCTTGATTCATGCAGAAA-TC-AGTATTATTacacgcagtacataca