lowQualScore : 111 1 11 11 11111 11 333333 222 33333333333333333 111 22222222 111 111 2 22222222222222222 1111111 11 333 11 11 222222 111111111 111 4444444444444 33333 3333333333 33333333333
lowQualScore : 6 6 8 3 8 999 777 0 11 6 8 8 44 1 66666 00 4 4 444444 4 2 4 4 4 222 4 4 3 6 4 3 11111111111111111 3 3 3 4 4 44 4 555 66 4 99999999 5 5 0 8888 5 333 000 777 4 4 5 3 66 44 3 3 0 3 3 77 3 7777 77 3 3 4 55555555555555555 3 999999 0000000 44 22 555 3 555 555 44 0 3 3 3 555 3 3 666666 7777 00 3 6 00 3 77777 4 111111 44 3 55 2 33 111111111 2 2 33 5 444 66 777 6666 222 2 33 5 333 33 2222222222222 33 555 888888 2 2 3 3 33 2 66 2 2 2 555 2 5 5 2 2 22222 5555 6666 2 33 2 77777 33 2 5555555555 2 33 2 99999999999 88 2 33 33 2 66 2
lowQualScore : . . . . . ... ... . .. . . . .. . ..... .. . . ...... . . . . . ... . . . . . . ................. . . . . . .. . ... .. . ........ . . . .... . ... ... ... . . . . .. .. . . . . . .. . .... .. . . . ................. . ...... ....... .. .. ... . ... ... .. . . . . ... . . ...... .... .. . . .. . ..... . ...... .. . .. . .. ......... . . .. . ... .. ... .... ... . .. . ... .. ............. .. ... ...... . . . . .. . .. . . . ... . . . . . ..... .... .... . .. . ..... .. . .......... . .. . ........... .. . .. .. . .. .
lowQualScore : 7 7 0 8 0 222 000 0 00 0 0 0 00 7 11111 66 4 4 888888 4 2 0 0 0 777 0 0 6 7 3 6 66666666666666666 6 6 6 0 0 88 4 111 11 4 77777777 0 0 1 9999 0 222 222 666 0 0 5 3 55 66 3 3 9 3 3 99 3 1111 99 3 1 7 88888888888888888 3 666666 8888888 00 55 000 3 888 000 66 8 1 1 1 888 3 3 777777 1111 00 3 2 44 1 77777 4 444444 22 1 55 9 99 444444444 7 7 77 3 777 33 444 1111 222 9 99 7 222 99 5555555555555 99 000 222222 9 9 1 1 99 9 88 9 9 9 000 9 7 7 9 9 66666 1111 1111 9 99 9 11111 44 5 0000000000 7 77 9 22222222222 99 9 99 99 9 88 9
consensus : TATTGAA-TTGCATCATCGGCGTT-CAGCACTGA-CTGATTC-A-G-TTTTA--AAA-GGTGTAAGAC--GATTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGG---N-TGAC-CAGTTTT-G-AAC-TCGGAGG-CT-AA-TATCTGTT-AAAAATGTANCAGA-TCT-C---C-T---------AG-AC-G-GACGATC-AA-C-AG-TCATT-C-AG--ATA-TTG-TGAGT--TT-GGCC-ACAAGAAG--T-TAT-ATTTTGAA--TGGCAA--CTCT-A-AGAT-GGACT-AACACGGGTGA-CGGATG-CG--TAAAA-TT-CAACG-T-A--A-TGA----AGGA--AA-ATT-GCCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A---CCT--AA--TTTTCGGAA-G-T-T---G-G-A---C--TT----AANTTTT-C-AAAGAT-CCTG-----TGAAGTAAGGT--A-AATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG--AGAAA-ACT--TTTTA-TGCATT-A-T--CAC------------AAAA--GA---T------A-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AAT-TT-A-----ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-------T-ATA-C--TAT-ATACAC-T---TAGT--TC-G-C--TCAG--A-T--TGTGTCAA-AACCCTG
Reference ( gi|5 ) : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGA-CTGATTC-A-G-TTTTA--AAA-GGTGTAAGAC--GACTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGG---AATGAC-CAGTTTT-G-AAC-TCGGATT-CT-AA-TATCTGTT-AAAAATGTAGCAGA-TCT-C---T-T---------AG-AC-G-GACGATC-AA-C-AG-TCATT-T-AG--ATA-TTGCTGAG---TT-GGCC-ACAAGAAG--T-TAT-ATTTTGAA--CGGCAA--CTCT-A-AGAT-GGACT-AA-ACGGGTGA-CGGATG-TG--TAAAA-TT-CAATG-T-A--A-TGA----AGGA--AA-ATT-GCCTGGGTGTT------------GGGGGTG-TA------GGGTT-------A-GCG--ACG--GCG-A---CC---AA--TTTTCGGAA-G-T-T---G-G-A---C--TT----AATTTTT-C-AAACAT-CCTG-----TGAAATAAGGT--A-A-TGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCA--A----CTG--GGAAA-ACT--TTTTA-TGCATT-A-T--CA-------------AAAA--GA---T------A-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AAT-TT-AT----ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA--------T-ATA-C--TAT-ATACAC-T---TAG---TC-G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|4 : TATTAAA-TTGCATCATTGGCGTT-CAGCACTGA-CTGACTC-A-A-GTTTA--AAA-GGTATAAGGC--GATTGGACAATAT-TATTTGTA-TAATTAC-ATTTTGCAGCGGAACT---A-GATTA--TTAAAC-A-TG
gi|2 : cacagagtttttacacaatctgagctaactgatgtatatagtataataggagtaaagggacctaacaatccgccattaaaatctcggtttctcgcttcaaactttcaaaactttgttatcttttgtgatgatgcataaaaagttttctcagtcgaaagtcagaatgttgttctttattgacatacataaatcatttaccttgcttcataggaatttgaaaatttaagtccaacttccgaaaattagatcgccgtcgttaaccctacaccacaatattcaggcaattttccttcattacgttgaattttacgcatccgtcaccttgtcagtccatcttaaagttgcaattcaaaatatgacttcttgtggccaaactaaaattgtatgaatgactgttgatcgtccgtctaaggagatctggtacaattttaccagatattagcctctgagttcaaaactggtcaaccaTATTGAA-TTGCATCAGCATCGTTTCAGCACTGA-CTGATTC-A-GGTTTTA--AAAAGGTGTAAGAC--GATTGGACAATAT-TATTTTTATTAATTAC-TTTTTGC-GCGGAATA---A-AATTT--TTAAAT-A-TGG---TA-GAC-CAGTTTT-GAAAG-TCGGATTGCT-AATTATCTGTT-AAAAATGTAGCAGA-TCTCC---T-T---------AG-AC-G-GACAATC-AA-C-AG-TCATT-TCAG--ATA-TTG-TGAGT--TT-GGCC-ACA-----------------TGAA--TGGCAAACTTCT-A-AGATGGGACT-AACACGGGTGATTGGATG-CG--TAAAA-TT-CAA-G-T-A--ATTGA----AGGAACAA-ATT-GCAGATATGTG------------AGGAGTGATAGAAGAGGAGTT-------A-GCGGAACAGTGCG-ATTTCC---AATTTTTTCGCAA-G-TCT---GTG-A---CCATTTTAAAATTTCT-CAAAACAT-CCCAAACGTTGAAGAAAAGTAAA-A-TGATTCTT-ACACAGTGTCATATAAA--GTGATCAGGAAACA---A-TTCT--GCA---CGTCTTCG--ACAACCTT--AGAAA-CCT--GTATACTGCATT-ACT--CA-------------CACA---A---TCGCCTCA-ACAGAAG-TTCT-GAAAAAGTTT-GCAGAG-CGAAGC-AATCTCCT-ATGTAATCTT-A-----ATGGCGTCCTATCGCTACTTAGGAT--C-CC-----TTTAC--C-C
gi|3 : gcagagagtttttcccacatttatattcgcatcaaaactgatcaaccaATTGAACTTGCATCATCAGCGTT-CAGCACTGACCTGA-TC-ATG-TTTTATTAAA-GGTGTAAGACGAGATTGAACAATTA-TATATTTA-TAATTAC--TTTTGCTGCGGAACT---ATGATTT--TTAAAT-A-TGG---ATTGACACAGTTTT-G-AACATCGGATCGCT-AA-TAGCCTTTAAAAAATG-AGCAGATTCTCC---T-T---------AGAAC-G-GACGATC-AAGC-AGTTCATT-T-AG--ATA-TTG-TGAGGGTTT-GGCCAACAAGAAG--T-TAT-ATTTT-AA--TGCAAA--CACT-ATAGAT-GGACT-AACAC-GGTGA-CGAAT--CG--TAAAATTT-CAATG-TAA--A-TGAACGGAAGA--AA-ATTGGCCTGGATGTT-------------GGGGTG-TA------GGGTT-------ACGCGGAACG--TCGCA---CCCA-AA--TTCT--GAA-GTT-T---G-G-A---C--TT----AAAATTT-CTAAACAT-CCTG-----TGAAATA-------------------ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--GAA---C--TTTCA--A----CTG--AGAAA-ACG--TTTTAGTGCATT-A-TCACA-------------AAAA--GA---T------A-ACA-AA--TTTT-G--AAAGTTT-GA-AAG-CG-AGA-AA---CCG-A-G-AA--TT-AA----ATGGCG---GATTG----TTAGG-T--CGCC-----TTTAC--T-CCTAATATTCACT-GTA-C--TAT-ATTCAT-A---TAGT--TC-G-CATTCAG--A-T--TGTGTCAA-AACCCTGt
gi|1 : tcgATTGAA-TTACATCATCAGCGTT-CAGCACTGA-CTGATTC-A-G-TTTT---AAA-GCTGTAAGGC--GATTGGACAATATATATTTTTA-TAATTACGTTTTTGCTGACGAACT---A-GATTT--TTAATTAA-TGG----ATGAC-CAGATTT-G-AAC-TCGGATG-CTAAA-TATCTGTT-AAAAATG-GGCAG--TTT-C---A-T---------AG-ACGG-GACGATC-AA-C-CG-TCATT-C-AGGTATA-TTG-TGAA---TT-TGAC-CCAAGAAG--TCTATAATTTTGAA--t
gi|6 : acagggttttgacacaatctgagcgaactatatagtgtatatagtatataggagtaaagggacctaacaatccgccattaaattctcggttgctcgcttcaaactttcaaaactttgttatcttttgtgaaagggcattaaagtctttcttcagctgaaagttagaatgtatgtcttattgacatgcatcaaatcataccttacttcacgaatgtttgaaaatttaagtccaacttcgaaaattggtcgccgtcgctaactacaccccacatccaggcaatttcgctcattgcattgaattttacacatccgtcacccgtgttagtccatctcagattgccattcaaaatataacttttgtggccaaattcacaatatctgaatgaccggttgatcgtcgtctgtggagatctgccacatttttaacagatattagcatcgagttcaaaaactgtcatccATTGAA-TTACATCATTGGAGTT-CAGCAt
gi|26 : cagggtattgacacaatctgagaaaactagtgtatatagtataataggagtaaaggtacctaataacccgccattaaattatcggtagcttgcttcaaactttcaaaactttgctatctcttgtgataatgcataaaaagttttctcagtcgaaagtcagaatgttgttctttattgacatacataaataatttacctcacttcacaggaatttcgaacttccaaaaattaggtcgccgttgttaaccctacaccacaatatccaggcaattttccttcaatacgttgaattttacacatccgtcacccgtgtctgaccatctgagagttgccattcaaaatataacttcttgtggccaaactcacaatatctgaatgactgattaaagagatctggtacattttaaccagatattagcctccgatttcaaaactggtcaaccacATTGAA-TTACATCATCAGCGTT-CAGCTCTGA-CTGATTCAA-G-TTt
gi|23 : TGTAAGAC--GATTGGACAATAT-TATTTTTA-TTATTAC-TTTTTGCTGCGGAACT---A-GATTTA-TTAGAaaa
gi|19 : TTGCTGCGGA-CT---T-CACTA--TTAAAT-A-TG----ATTGAG-CAGATTC-G-AAT-TCGGAGG-TC-AT-TATCTGGT-AAAAAAG-AATTGA-TCT-C---C-CG--------AA-AC-T-GACGATC-AA-C-ctacttaatc
gi|6 : tgTGCTGAACTCCAATGATGTAATTCAAT-G-TGG---T-TGAC-CAGTTTT-G-AAA-TCGGAGG-CT-AA-TATCTGGT-TAAAATGTACCAGA-TCT-C---T-T----------------------TA-AT-C-AG-TCATT-C-AG--ATA-TTG-TGAGT--TT-GGCC-ACAAGAAG--T-TAT-ATTTTGAA--TGGCAA--CTCT-C-AGAT-GGTCA-GACACGGGTGA-CGGATG-TG--TAAAA-TT-CAACG-T-A--T-TGA----AGGA--AA-ATT-GCCTGGATATT-------------GTGGTG-TA------GGGTT-------A-ACA--ACG--GCG-A---CCT--AA--TTTTTGGAA-G-T-T---C-G-A------------AAT------------T-CCTG-----TGAAGTGAGGTA-A-A-TTAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG--AGAAA-ACT--TTTTA-TGCATT-A-T--CAC------------AAGA--GA---T------A-GCA-AAG-TTTT-G--AAAGTTT-G--AAG-CA-AGC-TA---CCG-A-T-AAT-TT-A-----ATGGCG---GGTTA----TTAGG-T--A-CC-----TTTAC--T-CCTAT-------T-ATA-C--TAT-ATACAC-----TAGT--TT-T-C--TCAG--A-T--TGTGTCAA-TACCCTG
gi|4 : T--TTAA-T-A-TGG---T-TGAC-CAGTTTT-G-AAC-TCAGAGG-CT-AA-TATCTGGT-AAAATTGTACCAGA-TCT-CC--T-T---------AG-AC-G-GACGATC-AA-C-AG-TCATT-C-AT--ACA-ATTTTAGT---TT-GGCC-ACAAGAAG--T-CAT-ATTTTGAA--TTGCAA--CTTT-A-AGAT-GGACT-GA-CAAGGTGA-CGGATG-CG--TAAAA-TT-CAACG-T-A--A-TGA----AGGA--AA-ATT-GCCTGAATATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GCG-A---TCT--AA--TTTTCGGAA-G-T-T---G-G-A---C--TT----AAATTTT-C-AAAT-T-CCTA-----TGAAGCAAGGT--A-AATGAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG--AGAAA-ACT--TTTTA-TGCATC-A-T--CAC------------AAAA--GA---T------A-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGA-AA---CCG-A-G-ATT-TT-A-----ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-------T-ATA-C--TAT-ATACA--T---CAG---TTAG-C--TCAG--A-T--TGTGTAAA-AACTCTGt
gi|7 : ca--TTAAAT-ACTGGTTTAA--AC-CAG-TTT-G-AAC-T---------------TCTGTT--AAAATGTACTAAA-TCT-C---C-TTAAGAGTGAAG-AC-G-GACGATCAAA-C-AG-TCATT-CAAG--ATA-TTG-TGAAT--TT-GGCA-CCAAGAAAGTT-TAT-ATTTTGAAATAGGCAA--CTCT-A-AGAT-GGACT-AACACGGGTGA-CGGATG-CG--TAAAA-TTCCAACGTT-AC-A-TGA----AGGA--AA-A-T-GCCTGGAT-TT------------GTTGGTG-TA------GGGTTCATAATAA-ACG--ACA--TCG-A---CCT--AA--TTTTCGGAA-G-T-TTGGG-G-A---C--TT----AA-ATTT-C-AAAGATCCCTG-----TGAAGTAAGGTA-A-A-TGAT--TT-ATGC--TGTCA-ATAAAAGA---------AACA-ACA--TCT--G-----C--TTTttgcatcattggcgttcagcactgactgactcaagtttaaaaggtataaggcgattggacaatattatttgtataattacattttgcagcggaactagattattaaacatg
gi|1 : -A-TGG---A-TGAC--AGTTTTTG-AAC-TCG-ATG-CT-AA-TATCTGTT-AAAAATGTGGCAGA-TCT-C---CAC---------AG-AC-G--ACGATC-AA-CCGG-TCATT-C-AG--ATA-TTG-TGAA---TTTGGCC-ACAA-AAG--T-TAT-ATTTTGAA--TGGCAA---TCT-G-AGAT-GGACT-AACACGGGTGA-CGGATG-TG--TAAAA-TT-CAATG-C-A--A-TG-----AGCG--AA-ATT-GCCTGGATGT--------------GGGGTG-TA--------GTT-------A-GCG--ACG--GCG-A---CC---AA--TTTTC-GAA-G-T-T---G-G-A---C--TT----AAATTTT-C-AAACAT-TC-G-----TGAAGTAAGGT----A-TGAT--TTGATGCA-TGTCA-ATAA-------------GACATACA-TTCT--A-A---C--TTTCA--G----CTGAAGAAAG-AC---TTTAA-TGCCCT-T-T--CAC------------AAAA--GA---T------A-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AAT-TT-A-----ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA--------T-ATA-C--TAT-ATACAC-TATATAGT--TC-G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|24 : a-CAGTTTT-G-ATC-TCGGAGG-CT-AA-TATCTAAT-AAAAATGAATCTGA-TCT-C---C-CG--------AG-AC-G-GACGATC-A----AG-TAATT-tgaattacatcatcagcgttcagcactgactgattcagttttaaagctgtaaggcgattggacaatatatatttttataattacgtttttgctgacgaactagatttttaattaatggatgaccagatttgaactcggatgctaaatatctgttaaaaatgggcagtttcatagacgggacgatcaaccgtcattcaggtatattgtgaatttgacccaagaagtctataattttgaat
gi|21 : TTT-G-AAC-TCGGAGT-CT-AA-TATCTGTT-AAAAATGTAACATA-TCT-CCGTC-T---------AC-AC-GTAATAATA-AA-C-------TTGT-AG--CTACTTGCTGAga
gi|29 : TCTGTT-AAAAATGTACCATA-TCTCC---T-T---------AG-AT-G-GACtt
gi|13 : TT-A-AA--ATA-TTGTGAAG---GT-GGCG-ACAAG---------T-ACTT-GAA--TGATAA--TTTTTG-AGAT-GGACTGAA-ACGGTTGA-CGGATG-CA--TAAAA-TT-CAGCG-T-A--A-TGA----AGGA--AA-ATT-GCCTGGATAAT-------------GTGCTA-TA------GAGGT-------A-ATG--ATG--GCG-A---CCT--AA--TTCTCAGAA-G-C-T---G-G-A---C--TT----AATATTT-C-AAAGTT-CCTG-----TGAAGTCAGGT--ACA-CAAT--TT-AT-----------------G---------AACT-ACA-TTCC--G-A---C--TTTCG--A----CCG--AGAAA-A
gi|22 : atttttgaaaagttttttTTGAA--TGGAAA--ATCT-G-AGAT-GGACT-GACACGGATAA-CGGATG-CG--TACAA-TG-TAATG-A-A--A-TGA----AGGAC-AATATT-TCCTG
gi|27 : T-A-AGAT-GGACT-AACACGGGTGA-CGGATG-AG--CAAAA-TT-CAAa
gi|8 : GAT-GGATA-AA-ACGG-T-A-CG-ATGGTG--TAAA--TT-CA-TG-T-A--A-TGA----AGGA--AA--TT-GCCGGGATGTT------------GGGC-TG-TA------GGGTT-------A-GCGC-ACG---CG-A---CCCC-AA--TTTTCGGAAAG-T-T---G-G-GACCC--TA----AATCTTT-C-AA-CAT-C-TG-----TGAAGTAAGGT--A-AATGAT--TT-ATGC--T-TCA-ATAAA--G---------A-TA-ACACTTCT----A---C--TTTCGTTA----CTGAAGGGAA-ACT--TTTTA-TGCATT-T-T--CACC-----------AAAA--G----T------A-A-----G-TTT--G--AAAGTTTTG--AAG-CG-AGC-AA---CCG-A-GAAAT-TT-A-----ATTGC----GATTG----TTAGG-T--C-CC------TTA--------A--------T-----C--TAT-ATACAC-TA--TAGT--TC-G-C--TCAG--A-T--TGAGTCAA-AACCCTG
gi|9 : -ACGAGTGA-CGGATG-CG--TAAAA-TT-CAATG-C-A--A-TGA----AGGA--AA-ATT-GCCCGGATGTT------------GTGG-TG-TA------GGTTT-------A-ATG--ATG--CTG-A---CCT--AA--TTTTCGGAA-G-T-T---G-G-A---A--TT----AAATTTT-C-AAAGTT-CCT---------AGTAAGGT--A-AATGAT--TT-ATGTA-TGTTA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG--AGAAA-ACT--GTTTA-TGCATT-A-T--CAC------------AAAA--GA---T------A-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AAT-TT-G-----ATGGCG---GATTG----TTAGG-T--T-CC-----TTTAC--T-CCTAT-------T-ATA-C--TGT-ATACAC-----TAGT--TT-G-C--TCAG--A-A--TGTATCAA-AACCGTGt
gi|12 : cGGATGT-CAGATG-CGCATAAAA-GC-CACTG-T-ACAA-TGA----AGGA--AA-AGA-GCATGGA-GAA------------AATGGTG-TA------GG----------A-ACG--ACA--GCA-A---CCTAGAA--CTCTCGGAA-A-T-
gi|10 : -T-A--A-TGA----AGGA--AA-ATT-GACTGGAAGTTTGGATGTAGCCCGGGGATG-TA------GGGTT-------A-ACG--ACG--GCG-A---CC-----------C---A-A-T-T---G-G-----C--TT----AAATTTT-C-AAAGAT-CCTG-----TGAAATTAGGT--A-AATGAT--TT-ATGCT-TGTCA-ATAAA--G---------AAGA-ACA-TTCT--G-A---C--TTTCG--A----CTG--AGAAA-ACT--TTGTT-TGCATT-A-T--CGC------------AAAA--GA---T------A-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AAT-TT-A-----ATGGCG---GATTG----ATAGT-C--C-CC-----TTTAC--T-CATAT-------T-ATA-C--TAT-ATATACAC---TAGT--TC-G-C--TAAG--A-T--TGTGTCAA-ACCCCTGctgaaaagagaacaattttttgggggctttcgactgagaaaacttttactacgttgtcacgattaataatttaaaaaaccctaataaacagagagtttgaagagagaaggtgagtatttgctggcagcttgataggtgtcatctcttctatcataccgtgttaactag
gi|11 : T-GCCTGGGTATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GTG-G---CCT--AA--TTTTCGGAA-G-T-T---G-G-A---C--GT----AATTTTTTC-AAAGTT-CCTG------------------A-A-TGAT--AT-ATGTA-TGTCA-AAAAA--G---------AACA-ACA-TTTT--G-A---C--TTTCG--A----CTG--AGAAA-ACT--TTTAA-TGCATT-A-T--CAT------------AAAA--GA---T------A-ACA-AAG-TTTT-A--AAAGTTT-G--AAT-CC-AGC-AA---CCA-A-A-AAT-TT--C----ATGA-G---AATTG----TTAGG-T--C-CC-----TTTAC--T-GCTAT-------T-ATA-C--TAT-GTACAC-----TAG---TT-G-C--TCAG--A-T--TGTGTCAA-AACCCTt
gi|15 : GGAT-G-T-T---G-GGA---C--TT----AGCTTTT-C-AAAGGT-CCTG-----TAAAGTAAGGT--A-AATGAT--TT-ATGCA-GATCA-ATAAG--G---------AACA-ACA-TGCT--G-A---C--TT-------------------A-ACT--T-------CAC----------------------AAAC--GA---T------A-ACA-------------AAAGTTT-G--AAG-CA-AGG-AA---ACG-A-G-AAT-TT-A-----AT--------ATTG----TTAGG-T--C-CC-----
gi|18 : cct-AAAGAC-CTTG-----AGAAGTAAGGT--A-AATGAT--TG-ATGCA-TTTCA-ATAAA--G---------AACA-ACA-TTCT--T-A---C--TTTCG--A----CTG--AGAAA-ATA--TTGTA-TGCATT-A-T--CAC------------AAAA--GA---T------A-ACA-AAataggcccactatata
gi|12 : A-AAAGA--G---------AACA-ATT-TTTT--G-GGGGC--TTTCG--A----CTG--AGAAA-ACT--TTTAC-TACGTT-G-T--CACGATTAATAATTTAAAA--AACCCT------A-ATA-AA----CA-G--AGAGTTT-G--AAG-AG-AGA-AG---GTG-A-G-TAT-TT-GC-----TGGCA---GCTTG----ATAGG-T--G-TC-----ATCTC--T-TCTA--------TCATA-C--
gi|14 : ggatgtcagatgcgcataaaagccactgtacaatgaaggaaaagagcatggagaaaatggtgtaggaacgacagcaacctagaactctcggaaatctgA-ACA-CTCCTAG-A---CC-TTTGA--A----CTG--AGAAACACTGTCTCTA-TGCATTTA-T--CAC------------AAAACGAA---T------GGACA-AAG-TTTTTG--AAAGTTT-G--AAGCCA-AGCAAA---CCG-ATG-TAT-TT-AT-----TGGCG---GGTTG----TTA-G-T--T-TC-----TTTACTAT-CCTT--------T-A-A-C--TAT-ACA-AC-----TAGCTCTT-G-C--TCAGCAA-TG-TATGTCAACAACCCTcgtgttaactag
gi|16 : T--TTTTA-TGCATT-A-T--CA-------------CAAA--GA---T------A-CAA-AAGTTTTT-G--AAAGTTT-G--AAG-AG-AGC-AA---CCGTA-G-AAT-TT-A-----ATGGC----GATTG-----TAGG-TTCC-CC-----TTTAC--T-CCTATTCATC--T-ATAGC--TAT-ATACAC-----TAGTT-TT-GCC--TCAG--ATT--TGTGTCAA-AACCCTGcg
gi|17 : ct--AAAATTT-G--AAG-CG-AGC-AA---CCG-A-G-AAT-TTAATTATAATGGCG---GATTG----TTAGG-T--C-CCTTAAATTTGC--T-CATAT-------T-ATA-CTATAT-ATACAC-T---GGT---TC-A-C--TCAG--A-T--TGTGTCAA-CACCCTG
gi|20 : TAC--TTCCTA--------TTATA-C--TAT-ATACAC-----TAGT--TT-G-C--TCAG--A-T--TGTGTCAA-AACCt
gi|20 : gggtttgaccagcatctgagcaaactagtgtataatagtataataggagTAC--T-CCTA--------TTATA-C--TATTATACAC-T----AG---TTTG-C--TCAG--A-TGCTG-GTCAA-ACCC
gi|25 : AC--T-CCTA--------TTATA-G--TAT-ATACAC-T----AG---TTTG-C--TCAG--A-T--TGTGTCAA-AACCcttcctattatactatatacactagtttgctcagattgtgtcaaaacc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|28 ): AGAGGCATAGATTTCTATATTCCAAATCCGCAGGGT
Alignments
lowQualScore : 111 11111 11 111 33333333333 22222222222222222 1111111 11 111 111111111 111111111111 11 22222
lowQualScore : 6 3 6 6 6 6 6 111 8 99 6 6 6 0 33333 99 4 4 55 00 4 3 3 3 000 3 3 3 3 1 3 44444444444 3 3 8 4 4 4 4 66 4 66 4 6666 4 4 4 888 555 3 2 3 3 44 6 3 3 77 6 6666 77 3 2 00000000000000000 3 888888 0000000 3 11 44 3 44 000 44 2 2 888 3 3 44 6666 888 777 55 2 77777 2 33 2 44 2 33 000000000 2 2 33 2 666 33 33 8888 2 33 2 33 5 2 2 333333333333 00 888 2 2 2 2 33 2 66 2 2 2 444 2 5 5 2 777777 2 444 5555 2 33 2 66666 33 2 66666 8888888 2 2 77777 2 555 2 33 33 2 66 2
lowQualScore : . . . . . . . ... . .. . . . . ..... .. . . .. .. . . . . ... . . . . . . ........... . . . . . . . .. . .. . .... . . . ... ... . . . . .. . . . .. . .... .. . . ................. . ...... ....... . .. .. . .. ... .. . . ... . . .. .... ... ... .. . ..... . .. . .. . .. ......... . . .. . ... .. .. .... . .. . .. . . . ............ .. ... . . . . .. . .. . . . ... . . . . ...... . ... .... . .. . ..... .. . ..... ....... . . ..... . ... . .. .. . .. .
lowQualScore : 7 3 7 7 7 7 7 888 0 22 7 7 7 4 00000 55 0 0 44 66 0 6 6 6 999 6 6 3 5 0 3 22222222222 6 6 0 0 4 0 4 11 4 11 4 9999 4 0 0 000 999 6 1 1 1 22 2 5 1 33 2 5555 33 1 9 00000000000000000 1 888888 0000000 1 55 22 1 22 555 22 9 9 555 1 1 22 5555 666 999 44 9 11111 9 99 9 44 7 77 777777777 5 5 44 5 999 44 77 3333 7 77 7 77 3 7 7 777777777777 00 333 7 7 9 9 77 7 33 7 7 7 777 7 3 3 7 777777 7 777 7777 7 77 7 77777 22 4 22222 1111111 5 7 00000 7 111 7 77 77 7 33 7
consensus : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGG-NT--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
Reference ( family-561 ) : TATTGAA-TTGCATCATCGGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGG-NT--GAC-CAGTTTT-G-AAC-TCGGA-G-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-NTTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : -A-TGG-AT--GAC--AGTTTTTG-AAC-TCG-A-T-GCT-AA-TATCTGTTAAAAA-TGTGGCAGAT-CTCCAC---------AGA-C-G-ACGATCAA-CCGGT-CA-TTCA-G--ATATTG-TGAA--TTTGGCCA-CAA-AAG--T-TAT-ATTTTGAA-T-GGCAA---TCT-G-AGAT-GGACTAACACGGGTGA-CGGATG-TG--TAAAATT-CAATG-CA--A-TGAG----CGA--AA--TTG-CCTGGATGT--------------GGGGTG-TA------G--TT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCG-AA-GT-T---G-G-A--C----TTAA-ATTTTC---AAACAT-TC-G-----TGAAGTAAGGT-A--TGAT--TTGATGCA-TGTCA-ATAA-------------GACATACA-TTCT--A-A---C--TTTCA--G----CTGAA--GAAA-GAC--TTTAA-TGCCCT-T-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA------TA-------TA-CTA-TATACAC-TATATAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : aATTGAA-TTACATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTT---AAA-GCTGTAAGGCGA--TTGGACAATATATATTTTTA-TAATTACGTTTTTGCTGACGAACT---A-GATTT--TTAATTAA-TGG-AT--GAC-CAGATTT-G-AAC-TCGGA-T-GCTAAA-TATCTGTTAAAAA-TG-GGCAG-T-TTCA-T---------AGA-CGGGACGATCAA-C-CGT-CA-TTCA-GGTATATTG-TGAA--TTTGACC--CAAGAAG--TCTATAATTTTGAA-T-tgaattacatcatcagcgttcagcactgactgattcagttttaaagctgtaaggcgattggacaatatatatttttataattacgtttttgctgacgaactagatttttaattaatggatgaccagatttgaactcggatgctaaatatctgttaaaaatgggcagtttcatagacgggacgatcaaccgtcattcaggtatattgtgaatttgacccaagaagtctataattttgaat
gi|10 : acagggttttgacacaatctgagcgaactatatagtgtatatagtatataggagtaaagggacctaacaatccgccattaaattctcggttgctcgcttcaaactttcaaaactttgttatcttttgtgaaagggcattaaagtctttcttcagctgaaagttagaatgtatgtcttattgacatgcatcaaatcataccttacttcacgaatgtttgaaaatttaagtccaacttcgaaaattggtcgccgtcgctaactacaccccacatccaggcaatttcgctcattgcattgaattttacacatccgtcacccgtgttagtccatctcagattgccattcaaaatataacttttgtggccaaattcacaatatctgaatgaccggttgatcgtcgtctgtggagatctgccacatttttaacagatattagcatcgagttcaaaaactgtcatcc-TA--A-TGAA----GGA--AA-ATTG-ACTGGAAGTTTGGATGTAGCCCGGGGATG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCC--AA--TT-----------------G-G--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAATTAGGT-AAATGAT--TT-ATGCT-TGTCA-ATAAA--G---------AAGA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTGTT-TGCATT-A-TCGC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----ATAGT-C--C-CC-----TTTAC--T-CATAT-----TA-------TA-CTA-TATATACAC---TAG-TTC--G-C--TAAG--A-T--TGTGTCAA-ACCCCTG
gi|11 : TG-CCTGGGTATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GTG-G--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----GTAATTTTTTC---AAAGTT-CCTG------------------AATGAT--AT-ATGTA-TGTCA-AAAAA--G---------AACA-ACA-TTTT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTAA-TGCATT-A-TCAT------------AAAA--GA---TA-ACA-AAG-TTTT-A--AAAG-TTTG--AAT-CC-AGC-AA---CCA-A-A-AAT-T------TC-ATGA-G---AATTG----TTAGG-T--C-CC-----TTTAC--T-GCTAT-----TA-------TA-CTA-TGTACAC-----TAG-TT---G-C--TCAG--A-T--TGTGTCAA-AACCCTt
gi|12 : GGATGT-CAGATG-CGCATAAAAGC-CACTG-TACAA-TGAA----GGA--AA-AGAG-CATGGA-GAA------------AATGGTG-TA------GG----------A-ACG--ACA--GCA-A--CCTAGAA--CTCTCGGAA-AT-
gi|12 : A-AAAGA--G---------AACA-ATT-TTTT--G-GGGGC--TTTCG--A----CTG-A--GAAA-ACT--TTTAC-TACGTT-G-TCACGATTAATAATTTAAAA--AACCCTA-ATA-AA----CA-G--AGAG-TTTG--AAG-AG-AGA-AG---GTG-A-G-TAT-T------TG-CTGGCA---GCTTG----ATAGG-T--G-TC-----ATCTC--T-TCTAT-----CA-------TA-Cctgaaaagagaacaattttttgggggctttcgactgagaaaacttttactacgttgtcacgattaataatttaaaaaaccctaataaacagagagtttgaagagagaaggtgagtatttgctggcagcttgataggtgtcatctcttctatcataccgtgttaactag
gi|13 : ggatgtcagatgcgcataaaagccactgtacaatgaaggaaaagagcatggagaaaatggtgtaggaacgacagcaacctagaactctcggaaatctg-TTAA-A--ATATTG-TGAA--GGTGGCGA-CAAG---------T-ACTT-GAA-T-GATAA--TTTTTG-AGAT-GGACTGAAACGGTTGA-CGGATG-CA--TAAAATT-CAGCG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATAAT------------GTGC-TA-TA------GAGGT-------A-ATG--ATG--GCG-A--CCT--AA--TTCTCAGAA-GC-T---G-G-A--C----TTAA-TATTTC---AAAGTT-CCTG-----TGAAGTCAGGT-ACACAAT--TT-AT-----------------G---------AACT-ACA-TTCC--G-A---C--TTTCG--A----CCG-A--GAAA-Acgtgttaactag
gi|14 : atttttgaaaagttttttA-ACA-CTCCTAG-A---C--CTTTG--AA---CTG-A--GAAACACTGTCTCTA-TGCATTTA-TCAC------------AAAACGAA---TGGACA-AAG-TTTTTG--AAAG-TTTG--AAGCCA-AGCAAA---CCG-ATG-TAT-T------TA-TTGGCG---GGTTG----TTA-G-T--T-TC-----TTTACTAT-CCT-T-----TA--------A-CTA-TACA-AC-----TAG-CTCTTG-C--TCAGCAA-TG-TATGTCAACAACCCT
gi|15 : GGAT-GT-T---G-GGA--C----TTAG-CTTTTC---AAAGGT-CCTG-----TAAAGTAAGGT-AAATGAT--TT-ATGCA-GATCA-ATAAG--G---------AACA-ACA-TGCT--G-A---C--TT--------------------A-ACT-----------------TCAC------------AAAC--GA---TA-ACA-------------AAAG-TTTG--AAG-CA-AGG-AA---ACG-A-G-AAT-T------TA-AT--------ATTG----TTAGG-T--C-CC-----cg
gi|16 : cctT--TTTTA-TGCATT-A-TCAC-------------AAA--GA---TA-CAA-AAGTTTTT-G--AAAG-TTTG--AAG-AG-AGC-AA---CCGTA-G-AAT-T------TA-ATGGC----GATTG-----TAGG-TTCC-CC-----TTTAC--T-CCTATTCATCTA-------TAGCTA-TATACAC-----TAGTTTT--GCC--TCAG--ATT--TGTGTCAA-AACCCTGataggcccactatata
gi|17 : ct--AAAA-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-TTAATTATA-ATGGCG---GATTG----TTAGG-T--C-CCTTAAATTTGC--T-CATAT-----TA-------TA-CTA-TATATACAC---TGG-TTC--A-C--TCAG--A-T--TGTGTCAA-CACCCTG
gi|18 : ---AAAGAC-CTTG-----AGAAGTAAGGT-AAATGAT--TG-ATGCA-TTTCA-ATAAA--G---------AACA-ACA-TTCT--T-A---C--TTTCG--A----CTG-A--GAAA-ATA--TTGTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAt
gi|19 : TTGCTGCGGA-CT---T-CACTA--TTAAAT-A-TGA-TT--GAG-CAGATTC-G-AAT-TCGGA-G-GTC-AT-TATCTGGTAAAAA-AGAATT-GAT-CTCC-CG--------AAA-C-TGACGATCAA-C-
gi|2 : tgTATTGAA-TTGCATCAGCATCGTTTCAGCACTGAC-TGATTC-A-GGTTTTA--AAAAGGTGTAAGACGA--TTGGACAATAT-TATTTTTATTAATTAC-TTTTTGC-GCGGAATA---A-AATTT--TTAAAT-A-TGG-TA--GAC-CAGTTTT-GAAAG-TCGGATT-GCT-AATTATCTGTTAAAAA-TGTAGCAGAT-CTCCTT---------AGA-C-GGACAATCAA-C-AGT-CATTTCA-G--ATATTG-TGAG--TTTGGCCA-CA-----------------TGAA-T-GGCAAACTTCT-A-AGATGGGACTAACACGGGTGATTGGATG-CG--TAAAATT-CAA-G-TA--ATTGAA----GGAACAA-ATTG-CAGATATGTG------------AGGAGTGATAGAAGAGGAGTT-------A-GCGGAACAGTGCG-ATTTCC--AATTTTTTCGCAA-GTCT---GTG-A--CCATTTTAA-AATTTCTCAAAACAT-CCCAAACGTTGAAGAAAAGTAAAATGATTCTT-ACACAGTGTCATATAAA--GTGATCAGGAAACA---A-TTCT--GCA---CGTCTTCG--ACAACCTT-A--GAAA-CCT--GTATACTGCATT-ACTCAC------------ACAATCGCCT-CA-ACAGAAG-TTCT-GAAAAAG-TTTGCAGAG-CGAAGC-AATCTCCT-ATGTAATCT------TA-ATGGCGTCCTATCGCTACTTAGGAT--C-CC-----TTTAC--C-C
gi|20 : gcagagagtttttcccacatttatattcgcatcaaaactgatcaaccaTAC--T-CCTAT-----TA-------TA-CTATTATACAC-----TAG-TTT--G-C--TCAG--A-TGCTG-GTCAA-ACCCt
gi|20 : TAC--TTCCTAT-----TA-------TA-CTA-TATACAC-T----AG-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCcttcctattatactatatacactagtttgctcagattgtgtcaaaacc
gi|21 : gggtttgaccagcatctgagcaaactagtgtataatagtataataggagTTT-G-AAC-TCGGA-G-TCT-AA-TATCTGTTAAAAA-TGTAACATAT-CTCC-
gi|22 : TTGAA-T-GGAAA--ATCT-G-AGAT-GGACTGACACGGATAA-CGGATG-CG--TACAATG-TAATG-AA--A-TGAA----GGAC-AATATTT-CCTGgtctacacgtaataataaacttgtagctacttgctgatt
gi|23 : TGTAAGACGA--TTGGACAATAT-TATTTTTA-TTATTAC-TTTTTGCTGCGGAACT---A-GATTTA-TTAGAa
gi|24 : -CAGTTTT-G-ATC-TCGGA-G-GCT-AA-TATCTAATAAAAA-TGAATCTGAT-CTCC-CG--------AGA-C-GGACGATCA----AGT-AA-TTctacttaatc
gi|25 : AC--T-CCTAT-----TA-------TA-GTA-TATACAC-T----AG-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCga
gi|26 : ATTGAA-TTACATCATCAGCGTT-CAGCTCTGAC-TGATTCAA-G-TTat
gi|27 : T-A-AGAT-GGACTAACACGGGTGA-CGGATG-AG--CAAAATT-CAAaaa
gi|29 : TCTGTTAAAAA-TGTACCATAT-CTCCTT---------AGA-T-GGAC
gi|3 : ATTGAACTTGCATCATCAGCGTT-CAGCACTGACCTGAT-C-ATG-TTTTATTAAA-GGTGTAAGACGAGATTGAACAATTA-TATATTTA-TAATTAC-TTTT-GCTGCGGAACT---ATGATTT--TTAAAT-A-TGG-ATT-GACACAGTTTT-G-AACATCGGA-TCGCT-AA-TAGCCTTTAAAAAATG-AGCAGATTCTCC-TT--------AGAAC-GGACGATCAAGC-AGTTCA-TTTA-G--ATATTG-TGAGGGTTTGGCCAACAAGAAG--T-TAT-ATTTT-AA-T-GCAAA--CACT-ATAGAT-GGACTAACACGG-TGA-CGAAT--CG--TAAAATTTCAATG-TA--AATGAACGGAAGA--AA-ATTGGCCTGGATGTT------------GGGG-TG-TA------GGGTT-------ACGCGGAACG--TCGCA--CCC--AA--ATT-CTGAA-GT-TT--G-G-A--C----TTAA-AATTTCT--AAACAT-CCTG-----TGAAATAA-----------------TGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-AA--C--TTTCA--A----CTG-A--GAAA-ACG--TTTTAGTGCATT-A-TCAC------------AAAAA-GA---TA-ACA-AA--TTTT-G--AAAG-TTTGA-AAG-CG-AGA-AA---CCG-A-G-AAT-T------AA-ATGGCG---GATTG----TTAGG-T--CGCC-----TTTAC--T-CCTAA-----TATTCACTGTA-CTA-TATTCAT-A---TAG-TTC--G-CATTCAG--A-T--TGTGTCAA-AACCCTG
gi|4 : tcgT--TTAA-T-A-TGG-TT--GAC-CAGTTTT-G-AAC-TCAGA-G-GCT-AA-TATCTGGTAAAAT-TGTACCAGAT-CTCC-TT--------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-T--ACAATT-TTAG--TTTGGCCA-CAAGAAG--T-CAT-ATTTTGAA-T-TGCAA--CTTT-A-AGAT-GGACTGACA-AGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGAATATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GCG-A--TCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAT-T-CCTA-----TGAAGCAAGGT-AAATGAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATC-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGA-AA---CCG-A-G-ATT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACA--T---CAG-TTA--G-C--TCAG--A-T--TGTGTAAA-AACTCTGt
gi|4 : caTATTAAA-TTGCATCATTGGCGTT-CAGCACTGAC-TGACTC-A-A-GTTTA--AAA-GGTATAAGGCGA--TTGGACAATAT-TATTTGTA-TAATTAC-ATTTTGCAGCGGAACT---A-GATTA--TTAAAC-A-TGttgcatcattggcgttcagcactgactgactcaagtttaaaaggtataaggcgattggacaatattatttgtataattacattttgcagcggaactagattattaaacatg
gi|5 : cacagagtttttacacaatctgagctaactgatgtatatagtataataggagtaaagggacctaacaatccgccattaaaatctcggtttctcgcttcaaactttcaaaactttgttatcttttgtgatgatgcataaaaagttttctcagtcgaaagtcagaatgttgttctttattgacatacataaatcatttaccttgcttcataggaatttgaaaatttaagtccaacttccgaaaattagatcgccgtcgttaaccctacaccacaatattcaggcaattttccttcattacgttgaattttacgcatccgtcaccttgtcagtccatcttaaagttgcaattcaaaatatgacttcttgtggccaaactaaaattgtatgaatgactgttgatcgtccgtctaaggagatctggtacaattttaccagatattagcctctgagttcaaaactggtcaaccaTATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--CTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGAAT--GAC-CAGTTTT-G-AAC-TCGGA-T-TCT-AA-TATCTGTTAAAAA-TGTAGCAGAT-CTCT-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTTA-G--ATATTGCTGAG---TTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-C-GGCAA--CTCT-A-AGAT-GGACTAA-ACGGGTGA-CGGATG-TG--TAAAATT-CAATG-TA--A-TGAA----GGA--AA-ATTG-CCTGGGTGTT------------GGGGGTG-TA------GGGTT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-TTTTTC---AAACAT-CCTG-----TGAAATAAGGT--AATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCA--A----CTG-G--GAAA-ACT--TTTTA-TGCATT-A-TCA-------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TATATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA------TA-------TA-CTA-TATACAC-T---TAG--TC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|6 : TGCTGAACTCCAATGATGTAATTCAAT-G-TGG-TT--GAC-CAGTTTT-G-AAA-TCGGA-G-GCT-AA-TATCTGGTTAAAA-TGTACCAGAT-CTCT-T---------------------TAAT-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-C-AGAT-GGTCAGACACGGGTGA-CGGATG-TG--TAAAATT-CAACG-TA--T-TGAA----GGA--AA-ATTG-CCTGGATATT-------------GTGGTG-TA------GGGTT-------A-ACA--ACG--GCG-A--CCT--AA--TTTTTGGAA-GT-T---C-G-A---------AA-T-------------T-CCTG-----TGAAGTGAGGT-AAATTAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAGA--GA---TA-GCA-AAG-TTTT-G--AAAG-TTTG--AAG-CA-AGC-TA---CCG-A-T-AAT-T------TA-ATGGCG---GGTTA----TTAGG-T--A-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-----TAG-TTT--T-C--TCAG--A-T--TGTGTCAA-TACCCTG
gi|7 : --TTAAAT-ACTGG-TTTAAAC-CAGTTT--G-AAC-T----------------TCTGTTAAAA--TGTACTAAAT-CTCC-TTAAGAGTGAAGA-C-GGACGATCAAAC-AGT-CA-TTCAAG--ATATTG-TGAA--TTTGGCAC-CAAGAAAGTT-TAT-ATTTTGAAATAGGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATTCCAACGTTAC-A-TGAA----GGA--AA-A-TG-CCTGGAT-TT------------GTTGGTG-TA------GGGTTCATAATAA-ACG--ACA--TCG-A--CCT--AA--TTTTCGGAA-GT-TTGGG-G-A--C----TTAA-A-TTTC---AAAGATCCCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--TGTCA-ATAAAAGA---------AACA-ACA--TCT--G-----C--TTTt
gi|8 : GAT-GGA-TAAAACGG-T-A-CG-ATGGTG--TAAA-TT-CA-TG-TA--A-TGAA----GGA--AA--TTG-CCGGGATGTT------------GGGC-TG-TA------GGGTT-------A-GCGC-ACG---CG-A--CCCC-AA--TTTTCGGAAAGT-T---G-G-GACC----CTAA-ATCTTT---CAACAT-C-TG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--T-TCA-ATAAA--G----------ATA-ACACTTCT----A---C--TTTCGTTA----CTG-AAGGGAA-ACT--TTTTA-TGCATT-T-TCAC------------CAAA--AG---T------AAG--TTT-G--AAAGTTTTG--AAG-CG-AGC-AA---CCG-A-GAAAT-T------TA-ATTGC----GATTG----TTAGG-T--C-CC------TTA--------AT-----------------CTA-TATACAC-TA--TAG-TTC--G-C--TCAG--A-T--TGAGTCAA-AACCCTG
gi|9 : CACGAGTGA-CGGATG-CG--TAAAATT-CAATG-CA--A-TGAA----GGA--AA-ATTG-CCCGGATGTT------------GTGG-TG-TA------GGTTT-------A-ATG--ATG--CTG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--A----TTAA-ATTTTC---AAAGTT-CCT---------AGTAAGGT-AAATGAT--TT-ATGTA-TGTTA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--GTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TG-ATGGCG---GATTG----TTAGG-T--T-CC-----TTTAC--T-CCTAT-----TA-------TA-CTG-TATACAC-----TAG-TTT--G-C--TCAG--A-A--TGTATCAA-AACCGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): AGAGGCATAGATTTCTATATTCCAAATCCGCAGGGT
Alignments
lowQualScore : 111 11111 11 33333333333 22222222222222222 1111111 11 111 111111111 111111111111 11 22222
lowQualScore : 6 6 6 6 6 6 111 8 99 6 6 6 0 33333 99 4 4 55 00 4 3 3 3 999 3 3 3 3 1 3 44444444444 3 3 8 4 4 4 4 66 4 66 4 6666 4 4 4 888 555 3 2 3 3 44 6 3 3 77 6 6666 77 3 2 00000000000000000 3 888888 0000000 3 11 44 3 44 000 44 2 2 888 3 4444 6666 3 0 777 55 2 77777 2 33 2 44 2 33 000000000 2 2 33 2 666 33 33 8888 2 33 2 33 5 2 2 333333333333 00 888 2 2 2 2 33 2 66 2 2 2 444 2 5 5 2 777777 2 444 5555 2 33 2 66666 33 2 66666 8888888 2 2 77777 2 555 2 33 33 2 66 2
lowQualScore : . . . . . . ... . .. . . . . ..... .. . . .. .. . . . . ... . . . . . . ........... . . . . . . . .. . .. . .... . . . ... ... . . . . .. . . . .. . .... .. . . ................. . ...... ....... . .. .. . .. ... .. . . ... . .... .... . . ... .. . ..... . .. . .. . .. ......... . . .. . ... .. .. .... . .. . .. . . . ............ .. ... . . . . .. . .. . . . ... . . . . ...... . ... .... . .. . ..... .. . ..... ....... . . ..... . ... . .. .. . .. .
lowQualScore : 7 7 7 7 7 7 888 0 22 7 7 7 4 00000 55 0 0 44 66 0 6 6 6 555 6 6 3 5 0 3 22222222222 6 6 0 0 4 0 4 11 4 11 4 9999 4 0 0 000 999 6 1 1 1 22 2 5 1 33 2 5555 33 1 9 00000000000000000 1 888888 0000000 1 55 22 1 22 555 22 9 9 555 1 4444 5555 1 8 999 44 9 11111 9 99 9 44 7 77 777777777 5 5 44 5 999 44 77 3333 7 77 7 77 3 7 7 777777777777 00 333 7 7 9 9 77 7 33 7 7 7 777 7 3 3 7 777777 7 777 7777 7 77 7 77777 22 4 22222 1111111 5 7 00000 7 111 7 77 77 7 33 7
consensus : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
Reference ( family-561 ) : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : -A-TGGA-T--GAC--AGTTTTTG-AAC-TCG-A-T-GCT-AA-TATCTGTTAAAAA-TGTGGCAGAT-CTCCAC---------AGA-C-G-ACGATCAA-CCGGT-CA-TTCA-G--ATATTG-TGAA--TTTGGCCA-CAA-AAG--T-TAT-ATTTTGAA-T-GGCAA---TCT-G-AGAT-GGACTAACACGGGTGA-CGGATG-TG--TAAAATT-CAATG-CA--A-TGAG----CGA--AA--TTG-CCTGGATGT--------------GGGGTG-TA------G--TT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCG-AA-GT-T---G-G-A--C----TTAA-ATTTTC---AAACAT-TC-G-----TGAAGTAAGGT-A--TGAT--TTGATGCA-TGTCA-ATAA-------------GACATACA-TTCT--A-A---C--TTTCA--G----CTGAA--GAAA-GAC--TTTAA-TGCCCT-T-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA------TA-------TA-CTA-TATACAC-TATATAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : aATTGAA-TTACATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTT---AAA-GCTGTAAGGCGA--TTGGACAATATATATTTTTA-TAATTACGTTTTTGCTGACGAACT---A-GATTT--TTAATTAA-TGGA-T--GAC-CAGATTT-G-AAC-TCGGA-T-GCTAAA-TATCTGTTAAAAA-TG-GGCAG-T-TTCA-T---------AGA-CGGGACGATCAA-C-CGT-CA-TTCA-GGTATATTG-TGAA--TTTGACC--CAAGAAG--TCTATAATTTTGAA-T-tgaattacatcatcagcgttcagcactgactgattcagttttaaagctgtaaggcgattggacaatatatatttttataattacgtttttgctgacgaactagatttttaattaatggatgaccagatttgaactcggatgctaaatatctgttaaaaatgggcagtttcatagacgggacgatcaaccgtcattcaggtatattgtgaatttgacccaagaagtctataattttgaat
gi|10 : acagggttttgacacaatctgagcgaactatatagtgtatatagtatataggagtaaagggacctaacaatccgccattaaattctcggttgctcgcttcaaactttcaaaactttgttatcttttgtgaaagggcattaaagtctttcttcagctgaaagttagaatgtatgtcttattgacatgcatcaaatcataccttacttcacgaatgtttgaaaatttaagtccaacttcgaaaattggtcgccgtcgctaactacaccccacatccaggcaatttcgctcattgcattgaattttacacatccgtcacccgtgttagtccatctcagattgccattcaaaatataacttttgtggccaaattcacaatatctgaatgaccggttgatcgtcgtctgtggagatctgccacatttttaacagatattagcatcgagttcaaaaactgtcatcc-TA--A-TGAA----GGA--AA-ATTG-ACTGGAAGTTTGGATGTAGCCCGGGGATG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCC--AA--TT-----------------G-G--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAATTAGGT-AAATGAT--TT-ATGCT-TGTCA-ATAAA--G---------AAGA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTGTT-TGCATT-A-TCGC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----ATAGT-C--C-CC-----TTTAC--T-CATAT-----TA-------TA-CTA-TATATACAC---TAG-TTC--G-C--TAAG--A-T--TGTGTCAA-ACCCCTG
gi|11 : TG-CCTGGGTATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GTG-G--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----GTAATTTTTTC---AAAGTT-CCTG------------------AATGAT--AT-ATGTA-TGTCA-AAAAA--G---------AACA-ACA-TTTT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTAA-TGCATT-A-TCAT------------AAAA--GA---TA-ACA-AAG-TTTT-A--AAAG-TTTG--AAT-CC-AGC-AA---CCA-A-A-AAT-T------TC-ATGA-G---AATTG----TTAGG-T--C-CC-----TTTAC--T-GCTAT-----TA-------TA-CTA-TGTACAC-----TAG-TT---G-C--TCAG--A-T--TGTGTCAA-AACCCTt
gi|12 : GGATGT-CAGATG-CGCATAAAAGC-CACTG-TACAA-TGAA----GGA--AA-AGAG-CATGGA-GAA------------AATGGTG-TA------GG----------A-ACG--ACA--GCA-A--CCTAGAA--CTCTCGGAA-AT-
gi|12 : A-AAAGA--G---------AACA-ATT-TTTT--G-GGGGC--TTTCG--A----CTG-A--GAAA-ACT--TTTAC-TACGTT-G-TCACGATTAATAATTTAAAA--AACCCTA-ATA-AA----CA-G--AGAG-TTTG--AAG-AG-AGA-AG---GTG-A-G-TAT-T------TG-CTGGCA---GCTTG----ATAGG-T--G-TC-----ATCTC--T-TCTAT-----CA-------TA-Cctgaaaagagaacaattttttgggggctttcgactgagaaaacttttactacgttgtcacgattaataatttaaaaaaccctaataaacagagagtttgaagagagaaggtgagtatttgctggcagcttgataggtgtcatctcttctatcataccgtgttaactag
gi|13 : ggatgtcagatgcgcataaaagccactgtacaatgaaggaaaagagcatggagaaaatggtgtaggaacgacagcaacctagaactctcggaaatctg-TTAA-A--ATATTG-TGAA--GGTGGCGA-CAAG---------T-ACTT-GAA-T-GATAA--TTTTTG-AGAT-GGACTGAAACGGTTGA-CGGATG-CA--TAAAATT-CAGCG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATAAT-------------GTGCTA-TA------GAGGT-------A-ATG--ATG--GCG-A--CCT--AA--TTCTCAGAA-GC-T---G-G-A--C----TTAA-TATTTC---AAAGTT-CCTG-----TGAAGTCAGGT-ACACAAT--TT-AT-----------------G---------AACT-ACA-TTCC--G-A---C--TTTCG--A----CCG-A--GAAA-Acgtgttaactag
gi|14 : atttttgaaaagttttttA-ACA-CTCCTAG-A---C--CTTTG--AA---CTG-A--GAAACACTGTCTCTA-TGCATTTA-TCAC------------AAAACGAA---TGGACA-AAG-TTTTTG--AAAG-TTTG--AAGCCA-AGCAAA---CCG-ATG-TAT-T------TA-TTGGCG---GGTTG----TTA-G-T--T-TC-----TTTACTAT-CCT-T-----TA--------A-CTA-TACA-AC-----TAG-CTCTTG-C--TCAGCAA-TG-TATGTCAACAACCCT
gi|15 : GGAT-GT-T---G-GGA--C----TTAG-CTTTTC---AAAGGT-CCTG-----TAAAGTAAGGT-AAATGAT--TT-ATGCA-GATCA-ATAAG--G---------AACA-ACA-TGCT--G-A---C--TT--------------------A-ACT-----------------TCAC------------AAAC--GA---TA-ACA-------------AAAG-TTTG--AAG-CA-AGG-AA---ACG-A-G-AAT-T------TA-AT--------ATTG----TTAGG-T--C-CC-----cg
gi|16 : cctT--TTTTA-TGCATT-A-TCAC-------------AAA--GA---TA-CAA-AAGTTTTT-G--AAAG-TTTG--AAG-AG-AGC-AA---CCGTA-G-AAT-T------TA-ATGGC----GATTG-----TAGG-TTCC-CC-----TTTAC--T-CCTATTCATCTA-------TAGCTA-TATACAC-----TAGTTTT--GCC--TCAG--ATT--TGTGTCAA-AACCCTGataggcccactatata
gi|17 : ct--AAAA-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-TTAATTATA-ATGGCG---GATTG----TTAGG-T--C-CCTTAAATTTGC--T-CATAT-----TA-------TA-CTA-TATATACAC---TGG-TTC--A-C--TCAG--A-T--TGTGTCAA-CACCCTG
gi|18 : ---AAAGAC-CTTG-----AGAAGTAAGGT-AAATGAT--TG-ATGCA-TTTCA-ATAAA--G---------AACA-ACA-TTCT--T-A---C--TTTCG--A----CTG-A--GAAA-ATA--TTGTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAt
gi|19 : TTGCTGCGGA-CT---T-CACTA--TTAAAT-A-TGAT-T--GAG-CAGATTC-G-AAT-TCGGA-G-GTC-AT-TATCTGGTAAAAA-AGAATT-GAT-CTCC-CG--------AAA-C-TGACGATCAA-C-
gi|2 : tgTATTGAA-TTGCATCAGCATCGTTTCAGCACTGAC-TGATTC-A-GGTTTTA--AAAAGGTGTAAGACGA--TTGGACAATAT-TATTTTTATTAATTAC-TTTTTGC-GCGGAATA---A-AATTT--TTAAAT-A-TGGT-A--GAC-CAGTTTT-GAAAG-TCGGATT-GCT-AATTATCTGTTAAAAA-TGTAGCAGAT-CTCCTT---------AGA-C-GGACAATCAA-C-AGT-CATTTCA-G--ATATTG-TGAG--TTTGGCCA-CA-----------------TGAA-T-GGCAAACTTCT-A-AGATGGGACTAACACGGGTGATTGGATG-CG--TAAAATT-CAA-G-TA--ATTGAA----GGAACAA-ATTG-CAGATATGTG------------AGGAGTGATAGAAGAGGAGTT-------A-GCGGAACAGTGCG-ATTTCC--AATTTTTTCGCAA-GTCT---GTG-A--CCATTTTAA-AATTTCTCAAAACAT-CCCAAACGTTGAAGAAAAGTAAAATGATTCTT-ACACAGTGTCATATAAA--GTGATCAGGAAACA---A-TTCT--GCA---CGTCTTCG--ACAACCTT-A--GAAA-CCT--GTATACTGCATT-ACTCAC------------ACAATCGCCT-CA-ACAGAAG-TTCT-GAAAAAG-TTTGCAGAG-CGAAGC-AATCTCCT-ATGTAATCT------TA-ATGGCGTCCTATCGCTACTTAGGAT--C-CC-----TTTAC--C-C
gi|20 : gcagagagtttttcccacatttatattcgcatcaaaactgatcaaccaTAC--T-CCTAT-----TA-------TA-CTATTATACAC-----TAG-TTT--G-C--TCAG--A-TGCTG-GTCAA-ACCCt
gi|20 : TAC--TTCCTAT-----TA-------TA-CTA-TATACAC-T----AG-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCcttcctattatactatatacactagtttgctcagattgtgtcaaaacc
gi|21 : gggtttgaccagcatctgagcaaactagtgtataatagtataataggagTTT-G-AAC-TCGGA-G-TCT-AA-TATCTGTTAAAAA-TGTAACATAT-CTCC-
gi|22 : TTGAA-T-GGAAA--ATCT-G-AGAT-GGACTGACACGGATAA-CGGATG-CG--TACAATG-TAATG-AA--A-TGAA----GGAC-AATATTT-CCTGgtctacacgtaataataaacttgtagctacttgctgatt
gi|23 : TGTAAGACGA--TTGGACAATAT-TATTTTTA-TTATTAC-TTTTTGCTGCGGAACT---A-GATTTA-TTAGAa
gi|24 : -CAGTTTT-G-ATC-TCGGA-G-GCT-AA-TATCTAATAAAAA-TGAATCTGAT-CTCC-CG--------AGA-C-GGACGATCA----AGT-AA-TTctacttaatc
gi|25 : AC--T-CCTAT-----TA-------TA-GTA-TATACAC-T----AG-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCga
gi|26 : ATTGAA-TTACATCATCAGCGTT-CAGCTCTGAC-TGATTCAA-G-TTat
gi|27 : T-A-AGAT-GGACTAACACGGGTGA-CGGATG-AG--CAAAATT-CAAaaa
gi|29 : TCTGTTAAAAA-TGTACCATAT-CTCCTT---------AGA-T-GGAC
gi|3 : ATTGAACTTGCATCATCAGCGTT-CAGCACTGACCTGAT-C-ATG-TTTTATTAAA-GGTGTAAGACGAGATTGAACAATTA-TATATTTA-TAATTAC-TTTT-GCTGCGGAACT---ATGATTT--TTAAAT-A-TGGA-TT-GACACAGTTTT-G-AACATCGGA-TCGCT-AA-TAGCCTTTAAAAAATG-AGCAGATTCTCC-TT--------AGAAC-GGACGATCAAGC-AGTTCA-TTTA-G--ATATTG-TGAGGGTTTGGCCAACAAGAAG--T-TAT-ATTTT-AA-T-GCAAA--CACT-ATAGAT-GGACTAACACGG-TGA-CGAAT--CG--TAAAATTTCAATG-TA--AATGAACGGAAGA--AA-ATTGGCCTGGATGTT------------GGGG-TG-TA------GGGTT-------ACGCGGAACG--TCGCA--CCC--AA--ATT-CTGAA-GT-TT--G-G-A--C----TTAA-AATTTCT--AAACAT-CCTG-----TGAAATAA-----------------TGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-AA--C--TTTCA--A----CTG-A--GAAA-ACG--TTTTAGTGCATT-A-TCAC------------AAAAA-GA---TA-ACA-AA--TTTT-G--AAAG-TTTGA-AAG-CG-AGA-AA---CCG-A-G-AAT-T------AA-ATGGCG---GATTG----TTAGG-T--CGCC-----TTTAC--T-CCTAA-----TATTCACTGTA-CTA-TATTCAT-A---TAG-TTC--G-CATTCAG--A-T--TGTGTCAA-AACCCTG
gi|4 : tcgT--TTAA-T-A-TGGT-T--GAC-CAGTTTT-G-AAC-TCAGA-G-GCT-AA-TATCTGGTAAAAT-TGTACCAGAT-CTCC-TT--------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-T--ACAATT-TTAG--TTTGGCCA-CAAGAAG--T-CAT-ATTTTGAA-T-TGCAA--CTTT-A-AGAT-GGACTGACA-AGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGAATATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GCG-A--TCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAT-T-CCTA-----TGAAGCAAGGT-AAATGAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATC-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGA-AA---CCG-A-G-ATT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACA--T---CAG-TTA--G-C--TCAG--A-T--TGTGTAAA-AACTCTGt
gi|4 : caTATTAAA-TTGCATCATTGGCGTT-CAGCACTGAC-TGACTC-A-A-GTTTA--AAA-GGTATAAGGCGA--TTGGACAATAT-TATTTGTA-TAATTAC-ATTTTGCAGCGGAACT---A-GATTA--TTAAAC-A-TGttgcatcattggcgttcagcactgactgactcaagtttaaaaggtataaggcgattggacaatattatttgtataattacattttgcagcggaactagattattaaacatg
gi|5 : cacagagtttttacacaatctgagctaactgatgtatatagtataataggagtaaagggacctaacaatccgccattaaaatctcggtttctcgcttcaaactttcaaaactttgttatcttttgtgatgatgcataaaaagttttctcagtcgaaagtcagaatgttgttctttattgacatacataaatcatttaccttgcttcataggaatttgaaaatttaagtccaacttccgaaaattagatcgccgtcgttaaccctacaccacaatattcaggcaattttccttcattacgttgaattttacgcatccgtcaccttgtcagtccatcttaaagttgcaattcaaaatatgacttcttgtggccaaactaaaattgtatgaatgactgttgatcgtccgtctaaggagatctggtacaattttaccagatattagcctctgagttcaaaactggtcaaccaTATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--CTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGAAT--GAC-CAGTTTT-G-AAC-TCGGA-T-TCT-AA-TATCTGTTAAAAA-TGTAGCAGAT-CTCT-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTTA-G--ATATTGCTGAG---TTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-C-GGCAA--CTCT-A-AGAT-GGACTAA-ACGGGTGA-CGGATG-TG--TAAAATT-CAATG-TA--A-TGAA----GGA--AA-ATTG-CCTGGGTGTT------------GGGGGTG-TA------GGGTT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-TTTTTC---AAACAT-CCTG-----TGAAATAAGGT--AATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCA--A----CTG-G--GAAA-ACT--TTTTA-TGCATT-A-TCA-------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TATATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA------TA-------TA-CTA-TATACAC-T---TAG--TC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|6 : TGCTGAACTCCAATGATGTAATTCAAT-G-TGGT-T--GAC-CAGTTTT-G-AAA-TCGGA-G-GCT-AA-TATCTGGTTAAAA-TGTACCAGAT-CTCT-T---------------------TAAT-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-C-AGAT-GGTCAGACACGGGTGA-CGGATG-TG--TAAAATT-CAACG-TA--T-TGAA----GGA--AA-ATTG-CCTGGATATT-------------GTGGTG-TA------GGGTT-------A-ACA--ACG--GCG-A--CCT--AA--TTTTTGGAA-GT-T---C-G-----------AA-AT------------T-CCTG-----TGAAGTGAGGT-AAATTAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAGA--GA---TA-GCA-AAG-TTTT-G--AAAG-TTTG--AAG-CA-AGC-TA---CCG-A-T-AAT-T------TA-ATGGCG---GGTTA----TTAGG-T--A-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-----TAG-TTT--T-C--TCAG--A-T--TGTGTCAA-TACCCTG
gi|7 : --TTAAAT-ACTGGT-TTAAAC-CAGTTT--G-AAC-T----------------TCTGTTAAAA--TGTACTAAAT-CTCC-TTAAGAGTGAAGA-C-GGACGATCAAAC-AGT-CA-TTCAAG--ATATTG-TGAA--TTTGGCAC-CAAGAAAGTT-TAT-ATTTTGAAATAGGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATTCCAACGTTAC-A-TGAA----GGA--AA-A-TG-CCTGGAT-TT------------GTTGGTG-TA------GGGTTCATAATAA-ACG--ACA--TCG-A--CCT--AA--TTTTCGGAA-GT-TTGGG-G-A--C----TTAA-A-TTTC---AAAGATCCCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--TGTCA-ATAAAAGA---------AACA-ACA--TCT--G-----C--TTTt
gi|8 : GAT-GGA-TAAAACGG-T-A-CG-ATGGTG--TAAA-TT-CA-TG-TA--A-TGAA----GGA--AA--TTG-CCGGGATGTT------------GGGC-TG-TA------GGGTT-------A-GCGC-ACG---CG-A--CCCC-AA--TTTTCGGAAAGT-T---G-G-GACC----CTAA-ATCTTT---CAACAT-C-TG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--T-TCA-ATAAA--G----------ATA-ACACTTCT----A---C--TTTCGTTA----CTG-AAGGGAA-ACT--TTTTA-TGCATT-T-TCAC------------CAAA--AG---T------AAG--TTT-G--AAAGTTTTG--AAG-CG-AGC-AA---CCG-A-GAAAT-T------TA-ATTGC----GATTG----TTAGG-T--C-CC------TTA--------AT-----------------CTA-TATACAC-TA--TAG-TTC--G-C--TCAG--A-T--TGAGTCAA-AACCCTG
gi|9 : CACGAGTGA-CGGATG-CG--TAAAATT-CAATG-CA--A-TGAA----GGA--AA-ATTG-CCCGGATGTT------------GTGG-TG-TA------GGTTT-------A-ATG--ATG--CTG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--A----TTAA-ATTTTC---AAAGTT-CCT---------AGTAAGGT-AAATGAT--TT-ATGTA-TGTTA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--GTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TG-ATGGCG---GATTG----TTAGG-T--T-CC-----TTTAC--T-CCTAT-----TA-------TA-CTG-TATACAC-----TAG-TTT--G-C--TCAG--A-A--TGTATCAA-AACCGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): AGAGGCATAGATTTCTATATTCCAAATCCGCAGGGT
Alignments
lowQualScore : 111 11111 11 33333333333 22222222222222222 1111111 11 111 111111111 111111111111 11 22222
lowQualScore : 6 6 6 6 6 6 111 8 99 6 6 6 0 33333 99 4 4 55 00 4 3 3 3 999 3 3 3 3 1 3 44444444444 3 3 8 4 4 4 4 66 4 66 4 6666 4 4 4 888 555 3 2 3 3 44 6 3 3 77 6 6666 77 3 2 00000000000000000 3 888888 0000000 3 11 44 3 44 000 44 2 2 888 3 4444 6666 3 0 777 55 2 77777 2 33 2 44 2 33 000000000 2 2 33 2 666 33 33 8888 2 33 2 33 5 2 2 333333333333 00 888 2 2 2 2 33 2 66 2 2 2 444 2 5 5 2 777777 2 444 5555 2 33 2 66666 33 2 66666 8888888 2 2 77777 2 555 2 33 33 2 66 2
lowQualScore : . . . . . . ... . .. . . . . ..... .. . . .. .. . . . . ... . . . . . . ........... . . . . . . . .. . .. . .... . . . ... ... . . . . .. . . . .. . .... .. . . ................. . ...... ....... . .. .. . .. ... .. . . ... . .... .... . . ... .. . ..... . .. . .. . .. ......... . . .. . ... .. .. .... . .. . .. . . . ............ .. ... . . . . .. . .. . . . ... . . . . ...... . ... .... . .. . ..... .. . ..... ....... . . ..... . ... . .. .. . .. .
lowQualScore : 7 7 7 7 7 7 888 0 22 7 7 7 4 00000 55 0 0 44 66 0 6 6 6 555 6 6 3 5 0 3 22222222222 6 6 0 0 4 0 4 11 4 11 4 9999 4 0 0 000 999 6 1 1 1 22 2 5 1 33 2 5555 33 1 9 00000000000000000 1 888888 0000000 1 55 22 1 22 555 22 9 9 555 1 4444 5555 1 8 999 44 9 11111 9 99 9 44 7 77 777777777 5 5 44 5 999 44 77 3333 7 77 7 77 3 7 7 777777777777 00 333 7 7 9 9 77 7 33 7 7 7 777 7 3 3 7 777777 7 777 7777 7 77 7 77777 22 4 22222 1111111 5 7 00000 7 111 7 77 77 7 33 7
consensus : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
Reference ( family-561 ) : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : -A-TGGA-T--GAC--AGTTTTTG-AAC-TCG-A-T-GCT-AA-TATCTGTTAAAAA-TGTGGCAGAT-CTCCAC---------AGA-C-G-ACGATCAA-CCGGT-CA-TTCA-G--ATATTG-TGAA--TTTGGCCA-CAA-AAG--T-TAT-ATTTTGAA-T-GGCAA---TCT-G-AGAT-GGACTAACACGGGTGA-CGGATG-TG--TAAAATT-CAATG-CA--A-TGAG----CGA--AA--TTG-CCTGGATGT--------------GGGGTG-TA------G--TT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCG-AA-GT-T---G-G-A--C----TTAA-ATTTTC---AAACAT-TC-G-----TGAAGTAAGGT-A--TGAT--TTGATGCA-TGTCA-ATAA-------------GACATACA-TTCT--A-A---C--TTTCA--G----CTGAA--GAAA-GAC--TTTAA-TGCCCT-T-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA------TA-------TA-CTA-TATACAC-TATATAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : aATTGAA-TTACATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTT---AAA-GCTGTAAGGCGA--TTGGACAATATATATTTTTA-TAATTACGTTTTTGCTGACGAACT---A-GATTT--TTAATTAA-TGGA-T--GAC-CAGATTT-G-AAC-TCGGA-T-GCTAAA-TATCTGTTAAAAA-TG-GGCAG-T-TTCA-T---------AGA-CGGGACGATCAA-C-CGT-CA-TTCA-GGTATATTG-TGAA--TTTGACC--CAAGAAG--TCTATAATTTTGAA-T-tgaattacatcatcagcgttcagcactgactgattcagttttaaagctgtaaggcgattggacaatatatatttttataattacgtttttgctgacgaactagatttttaattaatggatgaccagatttgaactcggatgctaaatatctgttaaaaatgggcagtttcatagacgggacgatcaaccgtcattcaggtatattgtgaatttgacccaagaagtctataattttgaat
gi|10 : acagggttttgacacaatctgagcgaactatatagtgtatatagtatataggagtaaagggacctaacaatccgccattaaattctcggttgctcgcttcaaactttcaaaactttgttatcttttgtgaaagggcattaaagtctttcttcagctgaaagttagaatgtatgtcttattgacatgcatcaaatcataccttacttcacgaatgtttgaaaatttaagtccaacttcgaaaattggtcgccgtcgctaactacaccccacatccaggcaatttcgctcattgcattgaattttacacatccgtcacccgtgttagtccatctcagattgccattcaaaatataacttttgtggccaaattcacaatatctgaatgaccggttgatcgtcgtctgtggagatctgccacatttttaacagatattagcatcgagttcaaaaactgtcatcc-TA--A-TGAA----GGA--AA-ATTG-ACTGGAAGTTTGGATGTAGCCCGGGGATG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCC--AA--TT-----------------G-G--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAATTAGGT-AAATGAT--TT-ATGCT-TGTCA-ATAAA--G---------AAGA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTGTT-TGCATT-A-TCGC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----ATAGT-C--C-CC-----TTTAC--T-CATAT-----TA-------TA-CTA-TATATACAC---TAG-TTC--G-C--TAAG--A-T--TGTGTCAA-ACCCCTG
gi|11 : TG-CCTGGGTATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GTG-G--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----GTAATTTTTTC---AAAGTT-CCTG------------------AATGAT--AT-ATGTA-TGTCA-AAAAA--G---------AACA-ACA-TTTT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTAA-TGCATT-A-TCAT------------AAAA--GA---TA-ACA-AAG-TTTT-A--AAAG-TTTG--AAT-CC-AGC-AA---CCA-A-A-AAT-T------TC-ATGA-G---AATTG----TTAGG-T--C-CC-----TTTAC--T-GCTAT-----TA-------TA-CTA-TGTACAC-----TAG-TT---G-C--TCAG--A-T--TGTGTCAA-AACCCTt
gi|12 : GGATGT-CAGATG-CGCATAAAAGC-CACTG-TACAA-TGAA----GGA--AA-AGAG-CATGGA-GAA------------AATGGTG-TA------GG----------A-ACG--ACA--GCA-A--CCTAGAA--CTCTCGGAA-AT-
gi|12 : A-AAAGA--G---------AACA-ATT-TTTT--G-GGGGC--TTTCG--A----CTG-A--GAAA-ACT--TTTAC-TACGTT-G-TCACGATTAATAATTTAAAA--AACCCTA-ATA-AA----CA-G--AGAG-TTTG--AAG-AG-AGA-AG---GTG-A-G-TAT-T------TG-CTGGCA---GCTTG----ATAGG-T--G-TC-----ATCTC--T-TCTAT-----CA-------TA-Cctgaaaagagaacaattttttgggggctttcgactgagaaaacttttactacgttgtcacgattaataatttaaaaaaccctaataaacagagagtttgaagagagaaggtgagtatttgctggcagcttgataggtgtcatctcttctatcataccgtgttaactag
gi|13 : ggatgtcagatgcgcataaaagccactgtacaatgaaggaaaagagcatggagaaaatggtgtaggaacgacagcaacctagaactctcggaaatctg-TTAA-A--ATATTG-TGAA--GGTGGCGA-CAAG---------T-ACTT-GAA-T-GATAA--TTTTTG-AGAT-GGACTGAAACGGTTGA-CGGATG-CA--TAAAATT-CAGCG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATAAT-------------GTGCTA-TA------GAGGT-------A-ATG--ATG--GCG-A--CCT--AA--TTCTCAGAA-GC-T---G-G-A--C----TTAA-TATTTC---AAAGTT-CCTG-----TGAAGTCAGGT-ACACAAT--TT-AT-----------------G---------AACT-ACA-TTCC--G-A---C--TTTCG--A----CCG-A--GAAA-Acgtgttaactag
gi|14 : atttttgaaaagttttttA-ACA-CTCCTAG-A---C--CTTTG--AA---CTG-A--GAAACACTGTCTCTA-TGCATTTA-TCAC------------AAAACGAA---TGGACA-AAG-TTTTTG--AAAG-TTTG--AAGCCA-AGCAAA---CCG-ATG-TAT-T------TA-TTGGCG---GGTTG----TTA-G-T--T-TC-----TTTACTAT-CCT-T-----TA--------A-CTA-TACA-AC-----TAG-CTCTTG-C--TCAGCAA-TG-TATGTCAACAACCCT
gi|15 : GGAT-GT-T---G-GGA--C----TTAG-CTTTTC---AAAGGT-CCTG-----TAAAGTAAGGT-AAATGAT--TT-ATGCA-GATCA-ATAAG--G---------AACA-ACA-TGCT--G-A---C--TT--------------------A-ACT-----------------TCAC------------AAAC--GA---TA-ACA-------------AAAG-TTTG--AAG-CA-AGG-AA---ACG-A-G-AAT-T------TA-AT--------ATTG----TTAGG-T--C-CC-----cg
gi|16 : cctT--TTTTA-TGCATT-A-TCAC-------------AAA--GA---TA-CAA-AAGTTTTT-G--AAAG-TTTG--AAG-AG-AGC-AA---CCGTA-G-AAT-T------TA-ATGGC----GATTG-----TAGG-TTCC-CC-----TTTAC--T-CCTATTCATCTA-------TAGCTA-TATACAC-----TAGTTTT--GCC--TCAG--ATT--TGTGTCAA-AACCCTGataggcccactatata
gi|17 : ct--AAAA-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-TTAATTATA-ATGGCG---GATTG----TTAGG-T--C-CCTTAAATTTGC--T-CATAT-----TA-------TA-CTA-TATATACAC---TGG-TTC--A-C--TCAG--A-T--TGTGTCAA-CACCCTG
gi|18 : ---AAAGAC-CTTG-----AGAAGTAAGGT-AAATGAT--TG-ATGCA-TTTCA-ATAAA--G---------AACA-ACA-TTCT--T-A---C--TTTCG--A----CTG-A--GAAA-ATA--TTGTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAt
gi|19 : TTGCTGCGGA-CT---T-CACTA--TTAAAT-A-TGAT-T--GAG-CAGATTC-G-AAT-TCGGA-G-GTC-AT-TATCTGGTAAAAA-AGAATT-GAT-CTCC-CG--------AAA-C-TGACGATCAA-C-
gi|2 : tgTATTGAA-TTGCATCAGCATCGTTTCAGCACTGAC-TGATTC-A-GGTTTTA--AAAAGGTGTAAGACGA--TTGGACAATAT-TATTTTTATTAATTAC-TTTTTGC-GCGGAATA---A-AATTT--TTAAAT-A-TGGT-A--GAC-CAGTTTT-GAAAG-TCGGATT-GCT-AATTATCTGTTAAAAA-TGTAGCAGAT-CTCCTT---------AGA-C-GGACAATCAA-C-AGT-CATTTCA-G--ATATTG-TGAG--TTTGGCCA-CA-----------------TGAA-T-GGCAAACTTCT-A-AGATGGGACTAACACGGGTGATTGGATG-CG--TAAAATT-CAA-G-TA--ATTGAA----GGAACAA-ATTG-CAGATATGTG------------AGGAGTGATAGAAGAGGAGTT-------A-GCGGAACAGTGCG-ATTTCC--AATTTTTTCGCAA-GTCT---GTG-A--CCATTTTAA-AATTTCTCAAAACAT-CCCAAACGTTGAAGAAAAGTAAAATGATTCTT-ACACAGTGTCATATAAA--GTGATCAGGAAACA---A-TTCT--GCA---CGTCTTCG--ACAACCTT-A--GAAA-CCT--GTATACTGCATT-ACTCAC------------ACAATCGCCT-CA-ACAGAAG-TTCT-GAAAAAG-TTTGCAGAG-CGAAGC-AATCTCCT-ATGTAATCT------TA-ATGGCGTCCTATCGCTACTTAGGAT--C-CC-----TTTAC--C-C
gi|20 : gcagagagtttttcccacatttatattcgcatcaaaactgatcaaccaTAC--T-CCTAT-----TA-------TA-CTATTATACAC-----TAG-TTT--G-C--TCAG--A-TGCTG-GTCAA-ACCCt
gi|20 : TAC--TTCCTAT-----TA-------TA-CTA-TATACAC-T----AG-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCcttcctattatactatatacactagtttgctcagattgtgtcaaaacc
gi|21 : gggtttgaccagcatctgagcaaactagtgtataatagtataataggagTTT-G-AAC-TCGGA-G-TCT-AA-TATCTGTTAAAAA-TGTAACATAT-CTCC-
gi|22 : TTGAA-T-GGAAA--ATCT-G-AGAT-GGACTGACACGGATAA-CGGATG-CG--TACAATG-TAATG-AA--A-TGAA----GGAC-AATATTT-CCTGgtctacacgtaataataaacttgtagctacttgctgatt
gi|23 : TGTAAGACGA--TTGGACAATAT-TATTTTTA-TTATTAC-TTTTTGCTGCGGAACT---A-GATTTA-TTAGAa
gi|24 : -CAGTTTT-G-ATC-TCGGA-G-GCT-AA-TATCTAATAAAAA-TGAATCTGAT-CTCC-CG--------AGA-C-GGACGATCA----AGT-AA-TTctacttaatc
gi|25 : AC--T-CCTAT-----TA-------TA-GTA-TATACAC-T----AG-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCga
gi|26 : ATTGAA-TTACATCATCAGCGTT-CAGCTCTGAC-TGATTCAA-G-TTat
gi|27 : T-A-AGAT-GGACTAACACGGGTGA-CGGATG-AG--CAAAATT-CAAaaa
gi|29 : TCTGTTAAAAA-TGTACCATAT-CTCCTT---------AGA-T-GGAC
gi|3 : ATTGAACTTGCATCATCAGCGTT-CAGCACTGACCTGAT-C-ATG-TTTTATTAAA-GGTGTAAGACGAGATTGAACAATTA-TATATTTA-TAATTAC-TTTT-GCTGCGGAACT---ATGATTT--TTAAAT-A-TGGA-TT-GACACAGTTTT-G-AACATCGGA-TCGCT-AA-TAGCCTTTAAAAAATG-AGCAGATTCTCC-TT--------AGAAC-GGACGATCAAGC-AGTTCA-TTTA-G--ATATTG-TGAGGGTTTGGCCAACAAGAAG--T-TAT-ATTTT-AA-T-GCAAA--CACT-ATAGAT-GGACTAACACGG-TGA-CGAAT--CG--TAAAATTTCAATG-TA--AATGAACGGAAGA--AA-ATTGGCCTGGATGTT------------GGGG-TG-TA------GGGTT-------ACGCGGAACG--TCGCA--CCC--AA--ATT-CTGAA-GT-TT--G-G-A--C----TTAA-AATTTCT--AAACAT-CCTG-----TGAAATAA-----------------TGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-AA--C--TTTCA--A----CTG-A--GAAA-ACG--TTTTAGTGCATT-A-TCAC------------AAAAA-GA---TA-ACA-AA--TTTT-G--AAAG-TTTGA-AAG-CG-AGA-AA---CCG-A-G-AAT-T------AA-ATGGCG---GATTG----TTAGG-T--CGCC-----TTTAC--T-CCTAA-----TATTCACTGTA-CTA-TATTCAT-A---TAG-TTC--G-CATTCAG--A-T--TGTGTCAA-AACCCTG
gi|4 : tcgT--TTAA-T-A-TGGT-T--GAC-CAGTTTT-G-AAC-TCAGA-G-GCT-AA-TATCTGGTAAAAT-TGTACCAGAT-CTCC-TT--------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-T--ACAATT-TTAG--TTTGGCCA-CAAGAAG--T-CAT-ATTTTGAA-T-TGCAA--CTTT-A-AGAT-GGACTGACA-AGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGAATATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GCG-A--TCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAT-T-CCTA-----TGAAGCAAGGT-AAATGAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATC-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGA-AA---CCG-A-G-ATT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACA--T---CAG-TTA--G-C--TCAG--A-T--TGTGTAAA-AACTCTGt
gi|4 : caTATTAAA-TTGCATCATTGGCGTT-CAGCACTGAC-TGACTC-A-A-GTTTA--AAA-GGTATAAGGCGA--TTGGACAATAT-TATTTGTA-TAATTAC-ATTTTGCAGCGGAACT---A-GATTA--TTAAAC-A-TGttgcatcattggcgttcagcactgactgactcaagtttaaaaggtataaggcgattggacaatattatttgtataattacattttgcagcggaactagattattaaacatg
gi|5 : cacagagtttttacacaatctgagctaactgatgtatatagtataataggagtaaagggacctaacaatccgccattaaaatctcggtttctcgcttcaaactttcaaaactttgttatcttttgtgatgatgcataaaaagttttctcagtcgaaagtcagaatgttgttctttattgacatacataaatcatttaccttgcttcataggaatttgaaaatttaagtccaacttccgaaaattagatcgccgtcgttaaccctacaccacaatattcaggcaattttccttcattacgttgaattttacgcatccgtcaccttgtcagtccatcttaaagttgcaattcaaaatatgacttcttgtggccaaactaaaattgtatgaatgactgttgatcgtccgtctaaggagatctggtacaattttaccagatattagcctctgagttcaaaactggtcaaccaTATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--CTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGAAT--GAC-CAGTTTT-G-AAC-TCGGA-T-TCT-AA-TATCTGTTAAAAA-TGTAGCAGAT-CTCT-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTTA-G--ATATTGCTGAG---TTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-C-GGCAA--CTCT-A-AGAT-GGACTAA-ACGGGTGA-CGGATG-TG--TAAAATT-CAATG-TA--A-TGAA----GGA--AA-ATTG-CCTGGGTGTT------------GGGGGTG-TA------GGGTT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-TTTTTC---AAACAT-CCTG-----TGAAATAAGGT--AATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCA--A----CTG-G--GAAA-ACT--TTTTA-TGCATT-A-TCA-------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TATATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTA------TA-------TA-CTA-TATACAC-T---TAG--TC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|6 : TGCTGAACTCCAATGATGTAATTCAAT-G-TGGT-T--GAC-CAGTTTT-G-AAA-TCGGA-G-GCT-AA-TATCTGGTTAAAA-TGTACCAGAT-CTCT-T---------------------TAAT-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-C-AGAT-GGTCAGACACGGGTGA-CGGATG-TG--TAAAATT-CAACG-TA--T-TGAA----GGA--AA-ATTG-CCTGGATATT-------------GTGGTG-TA------GGGTT-------A-ACA--ACG--GCG-A--CCT--AA--TTTTTGGAA-GT-T---C-G-----------AA-AT------------T-CCTG-----TGAAGTGAGGT-AAATTAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAGA--GA---TA-GCA-AAG-TTTT-G--AAAG-TTTG--AAG-CA-AGC-TA---CCG-A-T-AAT-T------TA-ATGGCG---GGTTA----TTAGG-T--A-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-----TAG-TTT--T-C--TCAG--A-T--TGTGTCAA-TACCCTG
gi|7 : --TTAAAT-ACTGGT-TTAAAC-CAGTTT--G-AAC-T----------------TCTGTTAAAA--TGTACTAAAT-CTCC-TTAAGAGTGAAGA-C-GGACGATCAAAC-AGT-CA-TTCAAG--ATATTG-TGAA--TTTGGCAC-CAAGAAAGTT-TAT-ATTTTGAAATAGGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATTCCAACGTTAC-A-TGAA----GGA--AA-A-TG-CCTGGAT-TT------------GTTGGTG-TA------GGGTTCATAATAA-ACG--ACA--TCG-A--CCT--AA--TTTTCGGAA-GT-TTGGG-G-A--C----TTAA-A-TTTC---AAAGATCCCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--TGTCA-ATAAAAGA---------AACA-ACA--TCT--G-----C--TTTt
gi|8 : GAT-GGA-TAAAACGG-T-A-CG-ATGGTG--TAAA-TT-CA-TG-TA--A-TGAA----GGA--AA--TTG-CCGGGATGTT------------GGGC-TG-TA------GGGTT-------A-GCGC-ACG---CG-A--CCCC-AA--TTTTCGGAAAGT-T---G-G-GACC----CTAA-ATCTTT---CAACAT-C-TG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--T-TCA-ATAAA--G----------ATA-ACACTTCT----A---C--TTTCGTTA----CTG-AAGGGAA-ACT--TTTTA-TGCATT-T-TCAC------------CAAA--AG---T------AAG--TTT-G--AAAGTTTTG--AAG-CG-AGC-AA---CCG-A-GAAAT-T------TA-ATTGC----GATTG----TTAGG-T--C-CC------TTA--------AT-----------------CTA-TATACAC-TA--TAG-TTC--G-C--TCAG--A-T--TGAGTCAA-AACCCTG
gi|9 : CACGAGTGA-CGGATG-CG--TAAAATT-CAATG-CA--A-TGAA----GGA--AA-ATTG-CCCGGATGTT------------GTGG-TG-TA------GGTTT-------A-ATG--ATG--CTG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--A----TTAA-ATTTTC---AAAGTT-CCT---------AGTAAGGT-AAATGAT--TT-ATGTA-TGTTA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--GTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TG-ATGGCG---GATTG----TTAGG-T--T-CC-----TTTAC--T-CCTAT-----TA-------TA-CTG-TATACAC-----TAG-TTT--G-C--TCAG--A-A--TGTATCAA-AACCGTGt
blockSeqs : C T C A T G ATT A GA . T . CCAAT AA A C AA TA A . A A TT A T A A G T TTAAGAGTGA A G G . T T A GT C GG A GTT A A A ACT TG G A T G CA T T T CA T CGGA AC T G TGGATGTAGCCCGGGGA A GAAGAG CATAATA C GA GT C TT TAG TT A C TGG T GAC CATT T TCA GA C AACGT A TC . AG T AG TGATCAGGA . C TA C GGG GT TT CAAC . AG C GT C T C GATTAATAATTT CG CCC G G T T AA T CA C A A TCT T T T C TAATTA T TCC CTAC A TC G TTAAA TA T TCATC TTCACTG G T AC T CTT C AT CA T GC C
blockSeqs : . . . . . . A . . . . . AT A . . A T . . . . TC . . . T T . CG . . A . . . . . . . . TC . . . T AT . T . . . C C . C A . C . . AATGG . . . . GA . . . CC . . . T . GA . . T GT . . . . . T . . . . . . . A . . A . . . . G . . . TC CT . . . . . . A . . . . . T A . . . . . . . . . . . . . . . AC . C . . . . G .
blockSeqs : . . . . . . A . . . . . T . . . T . . . . . T . . . T G . TT . . . . . . . . . . . T . . . A A . G . . . . T . . . . . . . AGGAG . . . . C . . . C . . . . . G . . . GT . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TA . T . . . . . .
blockSeqs : . . . . . . A . . . . . A . . . T . . . . . G . . . A A . CG . . . . . . . . . . . T . . . C G . A . . . . T . . . . . . . GGGGG . . . . . . . . T . . . . . A . . . GG . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . C . . . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . . . G . . . T T . TT . . . . . . . . . . . T . . . C A . G . . . . C . . . . . . . GTTGG . . . . . . . . T . . . . . A . . . GA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . .
blockSeqs : A . . . T . . . . . G . . . T C . TT . . . . . . . . . . . T . . . C A . G . . . . T . . . . . . . GTGG . . . . . . . . C . . . . . A . . . CA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . T . . . . . .
blockSeqs : A . . . T . . . . . G . . . T G . TT . . . . . . . . . . . . . . . C A . G . . . . C . . . . . . . GTGC . . . . . . . . C . . . . . A . . . CA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . .
blockSeqs : . . . T . . . . . T . . . T C . T . . . . . . . . . . . . . . . C C . G . . . . C . . . . . . . GGGG . . . . . . . . T . . . . . A . . . CA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . C . . . . . .
blockSeqs : . . . . . . . G . . . T G . T . . . . . . . A . G . . . . T . . . . . . . GTGG . . . . . . . . T . . . . . A . . . GA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . C . T . . . G . . . . T . . . . . . . GTGG . . . . . . . . T . . . . . A . . . CA . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . GGGC . . . . . . . . T . . . . . A . . . GT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . GTGG . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : A** C** T** *****
originalCons : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-T---TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
finalCons : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAAC--TCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAG-TTTG--AAG-CG-AGC-AA---CCG-A-G-AAT-T------TA-ATGGCG---GATTG----TTAGG-T--C-CC-----TTTAC--T-CCTAT-----TA-------TA-CTA-TATACAC-----TAG-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): AGAGGCATAGATTTCTATATTCCAAATCCGCAGGGT
Alignments
lowQualScore : 111 11111 11 33333333333 22222222222222222 1111111 11 111 111111111 111111111111 11 1111
lowQualScore : 6 6 6 6 6 6 111 8 99 6 6 6 0 33333 99 4 4 55 00 4 3 3 3 999 3 3 3 3 1 3 44444444444 3 3 8 4 4 4 4 66 4 66 4 6666 4 4 4 888 555 3 2 3 3 44 6 3 3 77 6 6666 77 3 2 00000000000000000 3 888888 0000000 3 11 44 3 44 000 44 2 2 888 3 4444 6666 3 0 777 55 2 77777 2 33 2 44 2 33 000000000 2 2 33 2 666 33 33 8888 2 33 2 33 5 2 2 333333333333 00 888 2 2 2 2 33 2 66 2 2 2 444 2 5 2 2 2 2 777777 444 5555 2 33 2 66666 33 2 888888 8888888 2 33 2 33 0000 33 2 555 2 33 33 2 66 2
lowQualScore : . . . . . . ... . .. . . . . ..... .. . . .. .. . . . . ... . . . . . . ........... . . . . . . . .. . .. . .... . . . ... ... . . . . .. . . . .. . .... .. . . ................. . ...... ....... . .. .. . .. ... .. . . ... . .... .... . . ... .. . ..... . .. . .. . .. ......... . . .. . ... .. .. .... . .. . .. . . . ............ .. ... . . . . .. . .. . . . ... . . . . . . ...... ... .... . .. . ..... .. . ...... ....... . .. . .. .... .. . ... . .. .. . .. .
lowQualScore : 7 7 7 7 7 7 888 0 22 7 7 7 4 00000 55 0 0 44 66 0 6 6 6 555 6 6 3 5 0 3 22222222222 6 6 0 0 4 0 4 11 4 11 4 9999 4 0 0 000 999 6 1 1 1 22 2 5 1 33 2 5555 33 1 9 00000000000000000 1 888888 0000000 1 55 22 1 22 555 22 9 9 555 1 4444 5555 1 8 999 44 9 11111 9 99 9 44 7 77 777777777 5 5 44 5 999 44 77 3333 7 77 7 77 3 7 7 777777777777 00 333 7 7 9 9 77 7 33 7 7 7 777 7 3 7 7 7 7 777777 777 7777 7 77 7 22222 22 4 111111 1111111 5 44 5 44 3333 44 5 111 7 77 77 7 33 7
consensus : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTA-AT------GGCG---GATTG----TTAGG-T--C-CCTT-----TAC--T-CCTAT-----TA-------TA-C--TAT-ATA--CAC----TA--G-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
Reference ( family-561 ) : TATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--TTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGN-T--GAC-CAGTTTT-G-AAC-TCGGA-N-GCT-AA-TATCTGTTAAAAA-TGTANCAGAT-CTCC-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATGTT------------GGGGGTG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTA-AT------GGCG---GATTG----TTAGG-T--C-CCTT-----TAC--T-CCTAT-----TA-------TA-C--TAT-ATA--CAC----TA--G-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : -A-TGGA-T--GAC--AGTTTTTG-AAC-TCG-A-T-GCT-AA-TATCTGTTAAAAA-TGTGGCAGAT-CTCCAC---------AGA-C-G-ACGATCAA-CCGGT-CA-TTCA-G--ATATTG-TGAA--TTTGGCCA-CAA-AAG--T-TAT-ATTTTGAA-T-GGCAA---TCT-G-AGAT-GGACTAACACGGGTGA-CGGATG-TG--TAAAATT-CAATG-CA--A-TGAG----CGA--AA--TTG-CCTGGATGT--------------GGGGTG-TA------G--TT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCG-AA-GT-T---G-G-A--C----TTAA-ATTTTC---AAACAT-TC-G-----TGAAGTAAGGT-A--TGAT--TTGATGCA-TGTCA-ATAA-------------GACATACA-TTCT--A-A---C--TTTCA--G----CTGAA--GAAA-GAC--TTTAA-TGCCCT-T-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTA-AT------GGCG---GATTG----TTAGG-T--C-CCTT-----TAC--T-CCTA------TA-------TA-C--TAT-ATA--CACTATATA--G-TTC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|1 : aATTGAA-TTACATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTT---AAA-GCTGTAAGGCGA--TTGGACAATATATATTTTTA-TAATTACGTTTTTGCTGACGAACT---A-GATTT--TTAATTAA-TGGA-T--GAC-CAGATTT-G-AAC-TCGGA-T-GCTAAA-TATCTGTTAAAAA-TG-GGCAG-T-TTCA-T---------AGA-CGGGACGATCAA-C-CGT-CA-TTCA-GGTATATTG-TGAA--TTTGACC--CAAGAAG--TCTATAATTTTGAA-T-tgaattacatcatcagcgttcagcactgactgattcagttttaaagctgtaaggcgattggacaatatatatttttataattacgtttttgctgacgaactagatttttaattaatggatgaccagatttgaactcggatgctaaatatctgttaaaaatgggcagtttcatagacgggacgatcaaccgtcattcaggtatattgtgaatttgacccaagaagtctataattttgaat
gi|10 : acagggttttgacacaatctgagcgaactatatagtgtatatagtatataggagtaaagggacctaacaatccgccattaaattctcggttgctcgcttcaaactttcaaaactttgttatcttttgtgaaagggcattaaagtctttcttcagctgaaagttagaatgtatgtcttattgacatgcatcaaatcataccttacttcacgaatgtttgaaaatttaagtccaacttcgaaaattggtcgccgtcgctaactacaccccacatccaggcaatttcgctcattgcattgaattttacacatccgtcacccgtgttagtccatctcagattgccattcaaaatataacttttgtggccaaattcacaatatctgaatgaccggttgatcgtcgtctgtggagatctgccacatttttaacagatattagcatcgagttcaaaaactgtcatcc-TA--A-TGAA----GGA--AA-ATTG-ACTGGAAGTTTGGATGTAGCCCGGGGATG-TA------GGGTT-------A-ACG--ACG--GCG-A--CCC--AA--TT-----------------G-G--C----TTAA-ATTTTC---AAAGAT-CCTG-----TGAAATTAGGT-AAATGAT--TT-ATGCT-TGTCA-ATAAA--G---------AAGA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTGTT-TGCATT-A-TCGC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTA-AT------GGCG---GATTG----ATAGT-C--C-CCTT-----TAC--T-CATAT-----TA-------TA-CTATAT-ATA--CAC----TA--G-TTC--G-C--TAAG--A-T--TGTGTCAA-ACCCCTG
gi|11 : TG-CCTGGGTATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GTG-G--CCT--AA--TTTTCGGAA-GT-T---G-G-A--C----GTAATTTTTTC---AAAGTT-CCTG------------------AATGAT--AT-ATGTA-TGTCA-AAAAA--G---------AACA-ACA-TTTT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTAA-TGCATT-A-TCAT------------AAAA--GA---TA-ACA-AAG-TTTT-A--AAAGTTT-G--AAT-CC-AGC-AA---CCA-A-A-AA-T-TTC-AT------GA-G---AATTG----TTAGG-T--C-CCTT-----TAC--T-GCTAT-----TA-------TA-C--TAT-GTA--CAC----TA--G-TT---G-C--TCAG--A-T--TGTGTCAA-AACCCTt
gi|12 : GGATGT-CAGATG-CGCATAAAAGC-CACTG-TACAA-TGAA----GGA--AA-AGAG-CATGGA-GAA------------AATGGTG-TA------GG----------A-ACG--ACA--GCA-A--CCTAGAA--CTCTCGGAA-AT-
gi|12 : A-AAAGA--G---------AACA-ATT-TTTT--G-GGGGC--TTTCG--A----CTG-A--GAAA-ACT--TTTAC-TACGTT-G-TCACGATTAATAATTTAAAA--AACCCTA-ATA-AA----CA-G--AGAGTTT-G--AAG-AG-AGA-AG---GTG-A-G-TA-T-TTG-CT------GGCA---GCTTG----ATAGG-T--G-TCAT-----CTC--T-TCTAT-----CA-------TA-C--CGT-GTT--AAC----TA--G-ctgaaaagagaacaattttttgggggctttcgactgagaaaacttttactacgttgtcacgattaataatttaaaaaaccctaataaacagagagtttgaagagagaaggtgagtatttgctggcagcttgataggtgtcatctcttctatcataccgtgttaactag
gi|13 : ggatgtcagatgcgcataaaagccactgtacaatgaaggaaaagagcatggagaaaatggtgtaggaacgacagcaacctagaactctcggaaatctg-TTAA-A--ATATTG-TGAA--GGTGGCGA-CAAG---------T-ACTT-GAA-T-GATAA--TTTTTG-AGAT-GGACTGAAACGGTTGA-CGGATG-CA--TAAAATT-CAGCG-TA--A-TGAA----GGA--AA-ATTG-CCTGGATAAT-------------GTGCTA-TA------GAGGT-------A-ATG--ATG--GCG-A--CCT--AA--TTCTCAGAA-GC-T---G-G-A--C----TTAA-TATTTC---AAAGTT-CCTG-----TGAAGTCAGGT-ACACAAT--TT-AT-----------------G---------AACT-ACA-TTCC--G-A---C--TTTCG--A----CCG-A--GAAA-A
gi|14 : atttttgaaaagttttttA-ACA-CTCCTAG-A---C--CTTTG--AA---CTG-A--GAAACACTGTCTCTA-TGCATTTA-TCAC------------AAAACGAA---TGGACA-AAG-TTTTTG--AAAGTTT-G--AAGCCA-AGCAAA---CCG-ATG-TA-T-TTA-TT------GGCG---GGTTG----TTA-G-T--T-TCTT-----TACTAT-CCT-T-----TA--------A-C--TAT-ACA---AC----TA--G-CTCTTG-C--TCAGCAA-TG-TATGTCAACAACCCT
gi|15 : GGAT-GT-T---G-GGA--C----TTAG-CTTTTC---AAAGGT-CCTG-----TAAAGTAAGGT-AAATGAT--TT-ATGCA-GATCA-ATAAG--G---------AACA-ACA-TGCT--G-A---C--TT--------------------A-ACT-----------------TCAC------------AAAC--GA---TA-ACA-------------AAAGTTT-G--AAG-CA-AGG-AA---ACG-A-G-AA-T-TTA-AT--------------ATTG----TTAGG-T--C-CCcg
gi|16 : cctT--TTTTA-TGCATT-A-TCAC-------------AAA--GA---TA-CAA-AAGTTTTT-G--AAAGTTT-G--AAG-AG-AGC-AA---CCGTA-G-AA-T-TTA-AT------GGC----GATTG-----TAGG-TTCC-CCTT-----TAC--T-CCTATTCATCTA-------TAGC--TAT-ATA--CAC----TA--GTTTT--GCC--TCAG--ATT--TGTGTCAA-AACCCTGataggcccactatata
gi|17 : ct--AAAATTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTA-ATTATAATGGCG---GATTG----TTAGG-T--C-CCTTAAATTTGC--T-CATAT-----TA-------TA-C--TAT-ATATACAC----TG--G-TTC--A-C--TCAG--A-T--TGTGTCAA-CACCCTG
gi|18 : ---AAAGAC-CTTG-----AGAAGTAAGGT-AAATGAT--TG-ATGCA-TTTCA-ATAAA--G---------AACA-ACA-TTCT--T-A---C--TTTCG--A----CTG-A--GAAA-ATA--TTGTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAt
gi|19 : TTGCTGCGGA-CT---T-CACTA--TTAAAT-A-TGAT-T--GAG-CAGATTC-G-AAT-TCGGA-G-GTC-AT-TATCTGGTAAAAA-AGAATT-GAT-CTCC-CG--------AAA-C-TGACGATCAA-C-
gi|2 : tgTATTGAA-TTGCATCAGCATCGTTTCAGCACTGAC-TGATTC-A-GGTTTTA--AAAAGGTGTAAGACGA--TTGGACAATAT-TATTTTTATTAATTAC-TTTTTGC-GCGGAATA---A-AATTT--TTAAAT-A-TGGT-A--GAC-CAGTTTT-GAAAG-TCGGATT-GCT-AATTATCTGTTAAAAA-TGTAGCAGAT-CTCCTT---------AGA-C-GGACAATCAA-C-AGT-CATTTCA-G--ATATTG-TGAG--TTTGGCCA-CA-----------------TGAA-T-GGCAAACTTCT-A-AGATGGGACTAACACGGGTGATTGGATG-CG--TAAAATT-CAA-G-TA--ATTGAA----GGAACAA-ATTG-CAGATATGTG------------AGGAGTGATAGAAGAGGAGTT-------A-GCGGAACAGTGCG-ATTTCC--AATTTTTTCGCAA-GTCT---GTG-A--CCATTTTAA-AATTTCTCAAAACAT-CCCAAACGTTGAAGAAAAGTAAAATGATTCTT-ACACAGTGTCATATAAA--GTGATCAGGAAACA---A-TTCT--GCA---CGTCTTCG--ACAACCTT-A--GAAA-CCT--GTATACTGCATT-ACTCAC------------ACAATCGCCT-CA-ACAGAAG-TTCT-GAAAAAGTTT-GCAGAG-CGAAGC-AATCTCCT-ATGTAA-TCTTA-AT------GGCGTCCTATCGCTACTTAGGAT--C-CCTT-----TAC--C-C
gi|20 : gcagagagtttttcccacatttatattcgcatcaaaactgatcaacca-----TAC--T-CCTAT-----TA-------TA-C--TATTATA--CAC----TA--G-TTT--G-C--TCAG--A-TGCTG-GTCAA-ACCCt
gi|20 : -----TAC--TTCCTAT-----TA-------TA-C--TAT-ATA--CAC----TA--G-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCcttcctattatactatatacactagtttgctcagattgtgtcaaaacc
gi|21 : gggtttgaccagcatctgagcaaactagtgtataatagtataataggagTTT-G-AAC-TCGGA-G-TCT-AA-TATCTGTTAAAAA-TGTAACATAT-CTCC-
gi|22 : TTGAA-T-GGAAA--ATCT-G-AGAT-GGACTGACACGGATAA-CGGATG-CG--TACAATG-TAATG-AA--A-TGAA----GGAC-AATATTT-CCTGgtctacacgtaataataaacttgtagctacttgctgatt
gi|23 : TGTAAGACGA--TTGGACAATAT-TATTTTTA-TTATTAC-TTTTTGCTGCGGAACT---A-GATTTA-TTAGAa
gi|24 : -CAGTTTT-G-ATC-TCGGA-G-GCT-AA-TATCTAATAAAAA-TGAATCTGAT-CTCC-CG--------AGA-C-GGACGATCA----AGT-AA-TTctacttaatc
gi|25 : AC--T-CCTAT-----TA-------TA-G--TAT-ATA--CAC----TA--G-TTT--G-C--TCAG--A-T--TGTGTCAA-AACCga
gi|26 : ATTGAA-TTACATCATCAGCGTT-CAGCTCTGAC-TGATTCAA-G-TTat
gi|27 : T-A-AGAT-GGACTAACACGGGTGA-CGGATG-AG--CAAAATT-CAAaaa
gi|29 : TCTGTTAAAAA-TGTACCATAT-CTCCTT---------AGA-T-GGAC
gi|3 : ATTGAACTTGCATCATCAGCGTT-CAGCACTGACCTGAT-C-ATG-TTTTATTAAA-GGTGTAAGACGAGATTGAACAATTA-TATATTTA-TAATTAC-TTTT-GCTGCGGAACT---ATGATTT--TTAAAT-A-TGGA-TT-GACACAGTTTT-G-AACATCGGA-TCGCT-AA-TAGCCTTTAAAAAATG-AGCAGATTCTCC-TT--------AGAAC-GGACGATCAAGC-AGTTCA-TTTA-G--ATATTG-TGAGGGTTTGGCCAACAAGAAG--T-TAT-ATTTT-AA-T-GCAAA--CACT-ATAGAT-GGACTAACACGG-TGA-CGAAT--CG--TAAAATTTCAATG-TA--AATGAACGGAAGA--AA-ATTGGCCTGGATGTT------------GGGG-TG-TA------GGGTT-------ACGCGGAACG--TCGCA--CCC--AA--ATT-CTGAA-GT-TT--G-G-A--C----TTAA-AATTTCT--AAACAT-CCTG-----TGAAATAA-----------------TGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-AA--C--TTTCA--A----CTG-A--GAAA-ACG--TTTTAGTGCATT-A-TCAC------------AAAAA-GA---TA-ACA-AA--TTTT-G--AAAGTTT-GA-AAG-CG-AGA-AA---CCG-A-G-AA-T-TAA-AT------GGCG---GATTG----TTAGG-T--CGCCTT-----TAC--T-CCTAA-----TATTCACTGTA-C--TAT-ATT--CATA---TA--G-TTC--G-CATTCAG--A-T--TGTGTCAA-AACCCTG
gi|4 : tcgT--TTAA-T-A-TGGT-T--GAC-CAGTTTT-G-AAC-TCAGA-G-GCT-AA-TATCTGGTAAAAT-TGTACCAGAT-CTCC-TT--------AGA-C-GGACGATCAA-C-AGT-CA-TTCA-T--ACAATT-TTAG--TTTGGCCA-CAAGAAG--T-CAT-ATTTTGAA-T-TGCAA--CTTT-A-AGAT-GGACTGACA-AGGTGA-CGGATG-CG--TAAAATT-CAACG-TA--A-TGAA----GGA--AA-ATTG-CCTGAATATT------------GTGG-TG-TA------GGGTT-------A-ACG--ACG--GCG-A--TCT--AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-ATTTTC---AAAT-T-CCTA-----TGAAGCAAGGT-AAATGAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATC-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGA-AA---CCG-A-G-AT-T-TTA-AT------GGCG---GATTG----TTAGG-T--C-CCTT-----TAC--T-CCTAT-----TA-------TA-C--TAT-ATA--CAT----CA--G-TTA--G-C--TCAG--A-T--TGTGTAAA-AACTCTGt
gi|4 : caTATTAAA-TTGCATCATTGGCGTT-CAGCACTGAC-TGACTC-A-A-GTTTA--AAA-GGTATAAGGCGA--TTGGACAATAT-TATTTGTA-TAATTAC-ATTTTGCAGCGGAACT---A-GATTA--TTAAAC-A-TGttgcatcattggcgttcagcactgactgactcaagtttaaaaggtataaggcgattggacaatattatttgtataattacattttgcagcggaactagattattaaacatg
gi|5 : cacagagtttttacacaatctgagctaactgatgtatatagtataataggagtaaagggacctaacaatccgccattaaaatctcggtttctcgcttcaaactttcaaaactttgttatcttttgtgatgatgcataaaaagttttctcagtcgaaagtcagaatgttgttctttattgacatacataaatcatttaccttgcttcataggaatttgaaaatttaagtccaacttccgaaaattagatcgccgtcgttaaccctacaccacaatattcaggcaattttccttcattacgttgaattttacgcatccgtcaccttgtcagtccatcttaaagttgcaattcaaaatatgacttcttgtggccaaactaaaattgtatgaatgactgttgatcgtccgtctaaggagatctggtacaattttaccagatattagcctctgagttcaaaactggtcaaccaTATTGAA-TTGCATCATCAGCGTT-CAGCACTGAC-TGATTC-A-G-TTTTA--AAA-GGTGTAAGACGA--CTGGACAATAT-TATTTTTA-TAATTAC-TTTTTGCTGCGGAACT---A-GATTT--TTAAAT-A-TGGAAT--GAC-CAGTTTT-G-AAC-TCGGA-T-TCT-AA-TATCTGTTAAAAA-TGTAGCAGAT-CTCT-T---------AGA-C-GGACGATCAA-C-AGT-CA-TTTA-G--ATATTGCTGAG---TTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-C-GGCAA--CTCT-A-AGAT-GGACTAA-ACGGGTGA-CGGATG-TG--TAAAATT-CAATG-TA--A-TGAA----GGA--AA-ATTG-CCTGGGTGTT------------GGGGGTG-TA------GGGTT-------A-GCG--ACG--GCG-A--CC---AA--TTTTCGGAA-GT-T---G-G-A--C----TTAA-TTTTTC---AAACAT-CCTG-----TGAAATAAGGT--AATGAT--TT-ATGCA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCA--A----CTG-G--GAAA-ACT--TTTTA-TGCATT-A-TCA-------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTATAT------GGCG---GATTG----TTAGG-T--C-CCTT-----TAC--T-CCTA------TA-------TA-C--TAT-ATA--CACT---TA--G--TC--G-C--TCAG--A-T--TGTGTCAA-AACCCTG
gi|6 : TGCTGAACTCCAATGATGTAATTCAAT-G-TGGT-T--GAC-CAGTTTT-G-AAA-TCGGA-G-GCT-AA-TATCTGGTTAAAA-TGTACCAGAT-CTCT-T---------------------TAAT-C-AGT-CA-TTCA-G--ATATTG-TGAG--TTTGGCCA-CAAGAAG--T-TAT-ATTTTGAA-T-GGCAA--CTCT-C-AGAT-GGTCAGACACGGGTGA-CGGATG-TG--TAAAATT-CAACG-TA--T-TGAA----GGA--AA-ATTG-CCTGGATATT-------------GTGGTG-TA------GGGTT-------A-ACA--ACG--GCG-A--CCT--AA--TTTTTGGAA-GT-T---C-G-----------AA-AT------------T-CCTG-----TGAAGTGAGGT-AAATTAT--TT-ATGTA-TGTCA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--TTTTA-TGCATT-A-TCAC------------AAGA--GA---TA-GCA-AAG-TTTT-G--AAAGTTT-G--AAG-CA-AGC-TA---CCG-A-T-AA-T-TTA-AT------GGCG---GGTTA----TTAGG-T--A-CCTT-----TAC--T-CCTAT-----TA-------TA-C--TAT-ATA--CAC----TA--G-TTT--T-C--TCAG--A-T--TGTGTCAA-TACCCTG
gi|7 : --TTAAAT-ACTGGT-TTAAAC-CAGTTT--G-AAC-T----------------TCTGTTAAAA--TGTACTAAAT-CTCC-TTAAGAGTGAAGA-C-GGACGATCAAAC-AGT-CA-TTCAAG--ATATTG-TGAA--TTTGGCAC-CAAGAAAGTT-TAT-ATTTTGAAATAGGCAA--CTCT-A-AGAT-GGACTAACACGGGTGA-CGGATG-CG--TAAAATTCCAACGTTAC-A-TGAA----GGA--AA-A-TG-CCTGGAT-TT------------GTTGGTG-TA------GGGTTCATAATAA-ACG--ACA--TCG-A--CCT--AA--TTTTCGGAA-GT-TTGGG-G-A--C----TTAA-A-TTTC---AAAGATCCCTG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--TGTCA-ATAAAAGA---------AACA-ACA--TCT--G-----C--TTTt
gi|8 : GAT-GGA-TAAAACGG-T-A-CG-ATGGTG--TAAA-TT-CA-TG-TA--A-TGAA----GGA--AA--TTG-CCGGGATGTT------------GGGC-TG-TA------GGGTT-------A-GCGC-ACG---CG-A--CCCC-AA--TTTTCGGAAAGT-T---G-G-GACC----CTAA-ATCTTT---CAACAT-C-TG-----TGAAGTAAGGT-AAATGAT--TT-ATGC--T-TCA-ATAAA--G---------A-TA-ACACTTCT----A---C--TTTCGTTA----CTG-AAGGGAA-ACT--TTTTA-TGCATT-T-TCAC------------CAAA--AG---TA-A-----G-TTT--G--AAAGTTTTG--AAG-CG-AGC-AA---CCG-A-G-AAAT-TTA-AT------TGCG----ATTG----TTAGG-T--C-CCTT---------------A-------A-------T--C--TAT-ATA--CAC----TATAG-TTC--G-C--TCAG--A-T--TGAGTCAA-AACCCTG
gi|9 : CACGAGTGA-CGGATG-CG--TAAAATT-CAATG-CA--A-TGAA----GGA--AA-ATTG-CCCGGATGTT------------GTGG-TG-TA------GGTTT-------A-ATG--ATG--CTG-A--CCT--AA--TTTTCGGAA-GT-T---G-G-A--A----TTAA-ATTTTC---AAAGTT-CCT---------AGTAAGGT-AAATGAT--TT-ATGTA-TGTTA-ATAAA--G---------AACA-ACA-TTCT--G-A---C--TTTCG--A----CTG-A--GAAA-ACT--GTTTA-TGCATT-A-TCAC------------AAAA--GA---TA-ACA-AAG-TTTT-G--AAAGTTT-G--AAG-CG-AGC-AA---CCG-A-G-AA-T-TTG-AT------GGCG---GATTG----TTAGG-T--T-CCTT-----TAC--T-CCTAT-----TA-------TA-C--TGT-ATA--CAC----TA--G-TTT--G-C--TCAG--A-A--TGTATCAA-AACCGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): AGAGGCATAGATTTCTATATTCCAAATCCGCAGGGT