lowQualScore : 333333 2222222 3333333333333333 222222 22222 1 8888888888888888888888888888888888888888888888 2222222 11111 1 1111 111111111 111 2222222222 3333333333333333 1111 22222222 11111 1 11 333333 111111 2222 333333333333333333333333333 22222222222222222 33 11111 777777777777777777777777777777777777777777777777777777777 666666666666 444444444444444444444444444444444444444444444444444 11 1111111 222222222222 222222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222 1111 33333333 11111 1111 222222222222222222 222222222222222 1 11 222222222222 11 111 111 3333333 1 11 111111 111111 11
lowQualScore : 777777 1 6 5555555 1111111111111111 5 111111 22222 8 1 66 5 888 3 2 8888888888888888888888888888888888888888888888 2222222 00000 999 9999 2 4 55 4 4 0000 4 4 7777 3 99999 3 3 555555555 3 3 3 111 2 0000000000 5555555555555555 555 9 6 77 3 99 1 1111 555 777 66666666 2 77777 2 5 11111 888 7 3 3 77 6 3 0 1 6666666 3 3 88 444444 44 6 3 555555 77777 2 2 2 2 9999 66 2 999999999999999999999999999 22222222222222222 444 22 33 44 2 1 2 77777 4 8 2 000000000000000000000000000000000000000000000000000000000 66 8 2 999999999999 4 3 4 77 55 555555555555555555555555555555555555555555555555555 5 444 2 2 5 5 11 33 8 55 33 0000000 2 666 333333333333 6666 666666 888888888888888888 444 2 2 1 33 2 9999 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 99 1 33333333 5 2222 4 22222222 44 88888 3 3 3 3 44 2222 44 3 3 5 333333333333333333 5555 33 111111111111111 44 9 0 77 55 2 111111111111 00 3 3 4 555 000 0000000 5 0 5 77 88 666666 5 66 888 888 444444 22 0
lowQualScore : ...... . . ....... ................ . ...... ..... . . .. . ... . . .............................................. ....... ..... ... .... . . .. . . .... . . .... . ..... . . ......... . . . ... . .......... ................ ... . . .. . .. . .... ... ... ........ . ..... . . ..... ... . . . .. . . . . ....... . . .. ...... .. . . ...... ..... . . . . .... .. . ........................... ................. ... .. .. .. . . . ..... . . . ......................................................... .. . . ............ . . . .. .. ................................................... . ... . . . . .. .. . .. .. ....... . ... ............ .... ...... .................. ... . . . .. . .... . ........................................................................................... .. . ........ . .... . ........ .. ..... . . . . .. .... .. . . . .................. .... .. ............... .. . . .. .. . ............ .. . . . ... ... ....... . . . .. .. ...... . .. ... ... ...... .. .
lowQualScore : 000000 8 0 5555555 4444444444444444 0 222222 55555 8 9 99 0 888 8 0 5555555555555555555555555555555555555555555555 5555555 00000 000 4444 3 0 55 4 0 3333 0 0 7777 6 11111 1 3 222222222 3 3 1 555 9 0000000000 6666666666666666 444 2 2 33 1 66 9 9999 000 999 99999999 2 11111 7 7 99999 555 3 6 6 33 8 6 7 2 0000000 6 3 00 555555 66 7 3 444444 77777 7 7 9 9 4444 88 9 999999999999999999999999999 44444444444444444 444 88 77 11 5 9 5 66666 5 0 7 666666666666666666666666666666666666666666666666666666666 11 9 6 555555555555 0 6 0 55 55 222222222222222222222222222222222222222222222222222 7 777 7 5 0 3 77 77 0 99 44 6666666 4 555 111111111111 9999 777777 777777777777777777 444 5 5 2 44 5 7777 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 44 2 77777777 7 5555 0 33333333 22 77777 3 3 3 1 33 2222 22 1 1 7 222222222222222222 7777 77 111111111111111 22 8 5 33 66 1 555555555555 77 1 1 0 777 000 9999999 0 9 7 11 44 222222 0 99 888 888 444444 66 7
consensus : TCTTAAAATTTCA-ATTTCAACACTTTTATT-CN----AAAAAGCAAGATTTCGC---CCCC------AA-A------TTACAGTCCAGGAACA---AAAATTNTNC--TG-G---TTTAAAAA-T--------AT-T-------------AA--T-G------------TTGA----A--ATTTAAAAT-----ATGN--GA----CTGGTTT-TCAT--T-GTA-G-G-NTAC-ATGAAT-TA----T-A-----TTTTCTCTTCA-ATTT-CCAGTTTT-T-------GGCG-A-TT-TT-A-TA-T-TTTA-A--TAAAAA---A----A---TC--ATT---TAA-CC-C--AAA-A--TTCCCNTT-TTCCCA---TCGAG---A--T---ACAGCA-----GCCG-AT-TTTTNT---TA---TGTTGATCA-T-TTA-AAG-GTTGAA-ATTTAAAATATGA--GGC--TG-GTTT-TCATTG-TA--G-N-TA--CAT-AA-ATTA------TA-----TTTTCTCTT-CA-AT-TT-CCAGTTT-TT--G-GCGA-----TTT-T--ATATT-T-A------AAAAA---C--A---------TCATT---TAACCCC-AA--AATTCCC-ATT-TTCCC-ATCGAGG---ATACA-GC-AGCC----GA-T-TTTT----------TTAT--T-GTTG-TGAT-------A------T--GAA-ATTTAAAATNTG-NG--ACT-G--T-TTT-CATT-GTAGGT-T--ACAT---AAATTA------TA----TT----T----T----TCAAT-CAA-T-T-C---CA-G-T-TT-T--G--G-CG--A--TT-------T-T---TAT----A--T----AA----AAA-A----CA-------TC---------ATT---TA-ACC-CCAAAA--TTCCCATT-TTCCCATCGAG----A-TACAG------C-AGCC--GA-TT--TT-TTA--ATG--C-TGATCGTTCTAT--AA-G--TT--GAA-ATTTAA-AAT-TTGA--GAT--TT---GGTTTTTCATT-------GTAGGNTACAT----AA-ATTATA--------TT--TTCT--T--CA-AT-TT-CCAGT-TTT-TG---GCG--A-TT-TT-TAT----A--T------A---AA----AA--AA-C--A---------TCATT--TAACCCCCAAAA--TTCCCATTTTCCCATCGAGANA-CA----GCAGCCG--ATTT-TT-ATT-ATGTTGTT--TGT---ATAT--A----TTTTC-TTGC-ATG-AAT-AATCAATAAAT-CA---TTTCTGT-TG--CAA---TT---AGTTTGAGG------TTAGGCCCAAAA
Reference ( gi|2 ) : TCTTAAAATTTCATATTTTAATACTTTTATT-CC----AAAAAGCAAGATTTTGA---CCCC------AA-A------TTACAGTCCAGGAACA---AAAATTGTTC--TG-G---TATGAAAA-T--------AT-C-------------AA--T-G------------TTGA----A--ATTTAAAAT-----ATGA--GA----CTGGATT-TCAT--T-GTA-G-A-ATAC-ATGAAT-TA----T-A-----TTTTCTCTTCA-ATCT-CCAGTTTT-T-------GGCG-A-TT-TT-A-TA-T-TTTA-A--TAAAAA---A----A---TA--ATT---TAA-CC-C--AAA-A--TTCCCTTC-TTCCCA---TCGAG---A--G---AAAACA-----GCCG-AT-TTTTCT---TA---TGTTGATCA-T-TTA-AAG-GTTGGA-ATTTGAAATATGA--GGC--TG-GTTT-TCATTT-TA--G-T-TA--CAT-AA-ATTA------TA-----TTTTCTCTT-CA-AT-TT-CCAGATG-TT--G-GCGA-G---TTT-C--ATATTGT-A----T-AAAAA---C--A---------CCATT---TAACCCC-AA--AATTCCCAATT-TTTCC-ATCGAGG---ATACA-GC-A-CC----G--T-TTTT----------TTAT--T-GTTG-TGAC-------A------T--GAA-ATTTAAAATTTG-CGCCACT-G--T-TTT-CATT-GTAGGT-T--AC-T---AGATTA------TA----TT----T----T----TCAAC-CAA-T-T-C---CA-G-T-TT-T--G--G-CG--A--TT-------T-T---TAT----A--T----AA----AAA-A----CA-------TA---------ATT---TA-ACC-CCAAAA--TTCCCATT-TTCCCATCGAG----A-TACAG------CTAGCC--AA-TA--TT-TTA--ATG--C-TAATCACTCCAT--AA-G--TT--GAA-ATTTAACAAT-TCAA--GAT--TT---GGTTTTTCATG-------GTAGGGTACAT----AA-ATTATA--------TT--TTCT--T--CA-AT-TT-CCAGT-TTT-TG---ACG--A-TT-TT-TAT----A--T------A---AA----AA--AG-C--A---------TCATT--TAACCCCCAAAA--TTCCAATTTTTCCATCGACAGA-TA----GCAGCCG--ATTT-TT-ATT-ATGTTGTG--TGT---ATAT--C----TTTTC-TCGC-ATG-AAT-TATCAATAAAT-CA---TTTCTGT-TG--CAA---TT---AGTTTGAGG------TTATGCCCAAAA
gi|1 : TCTTAAGA----A-ATTTCAACACTTTTATT-TA----AAAAAGCAAGACCCCCAATCCCCC------AA-AAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCG---TTTAAAAAAC--------AT-T-------------AACTT-GATCCAT------TTGA----ATTATTGAATATTGAAAATGA--GAACCACTAG-TT-TTATCCT-GTA-ATA-ATACGATGAAT-TA----TTA-----TTTTCTCTTCA-ATCT-CCAGTTTT-TTTTTTCTGGCGCA-TT-TTGA-AA-T-TTTA-AG-CAAAAC---A----T---TC--ATT---TAAGCC-C--AAA-AA-TTCGCTTCCTTTCCA---TCGAGC--A--T---GAATCACGCCGACCG-AT-TTTTAT---TAC--TGTTTTTCAAT-TTA-AAGCGTTGAA-ATTT-AAATATGA--GGCATTG-TTTTCTCATGG-TACGG-C-TT--CACCAA-ATTA------TA-----TTT-CTCTTTCA-AT-TT-CCAGTTT-TT--GCGCGG-A---TTT-TTTATATT-T-A----G-AAAAA---C--A---------CCATT---TAAACAG-AA--AATTCCC--CT-TTCCC-ACCAAGA---AAACAAGA-G-CC----G--A-TCTA----------TTAA--T-AT-G-T-AG-------A------TTGGAA-ATTTAAAATTTG-AG--ACT-GG-T-TTT-CATT-GTATGT-T--ACAT---AAATTA------TAATTTTT----T----T----TCT-T-CAA-TCT-C---CA-T-T-TT-T--GCGG-CG--GATTT-------T-T---TGT----A--T----AA----AAA-A----CGAAAAAATTC---------ATT---TATACC-CCTAA---TTCACATT-TTCA-ATCGAGGAC-A-AACAG------CAGGCC--GA-TT--TTGTTT--ATG--CCTAATG---CGATTAAA-GGTTT--GAA-ATTGAA-AATCTTGA--CAT--T----GGCTTTCAATT-------GTAGGGTACAT----AA-ATTATATT------TT--TTCT--T--CA-AT-TTCCCAGT-TTTGTGCGCGCA--ATTT-TT-TAT----A--T------A---AA----AA--AACC--A---------TCATTAATAA-CCCCAAAA--TTCCCATTTTCCCATCG--AGA-TACAGCGCAGCCG--A-TT-TT-ATT-ATGTTATT--TGT---ATATTAT----TTTCC-TTGCTATGAAAT-AATCAATAAATAAA---TTTCTGTCTGGCCAA---TT---AG-TTGAGG------TTAGGCCCAAAA
gi|4 : ttTCTTAAACTTTCAAATTTTAACACTTTTAGT-AA----AAAAAGCATGATTTC-----CCCC------AA-AAA----TTACAGCCCAGGA--------------TC--TG-G---TTTAAAAA-C--------AT-TAATTGACAATTCAAA--T-G------------TTGA----A--ATTTAAAAT-----ATGG--AA----TTGGTTT-TCAT--T-GTA-G-A-AAAC-ATGAA-----------------GTTCTCTTCA-ATCT-CCAGTTTT-T-------GGCG-A-AT-TT-A-AA-TATCTA-----AAAAA---C----A---TC--ATT---TAA-CC-C--CAA-A--TTCCCTTC-TTCCCA---TCAAG---AT-GTATACATCA-----GCCG-AT-TTTTAT---TA---TGTTCATCATT-TTT-AAG-GTTGAATATTCAAAATATGA--AGG--TT-GTTT-TCATAG-TAG-G-T-TA--CAT-AA-ATTATACATGTA-----TTTTCTCTT-CA-AT-TT-CCAG-T--TT--G-GGGC-GTTTTTT-T--ATATT-T-A------AAAAA---C--AAACAAATCGCCATT---TAACCCC--A--AATTCCCA--T-TTTCCAAACAAGA---A-ACA-ATAA-CT----G--A-TTTT----------TAAT--atatggctagattgactaacta
gi|9 : aattTCTTGAAA----ATATTTTAACACTTTTATT-CC----AAAAAGCAAGATTTTGC---CCCA------AA-A------TTACAGTCCAGGAACA---AAAATTGTTC--TG-G---TTTGAAAA-TGTTAATTGAT-CATCTA--------AA--T-G------------TTGA----A--ATTTAAAAT-----ACGA--GA----CTGGATT-TCAT--A-GTA-G-A-ATAC-ATGAAT-GA----T-A-----TTTTCTCTTCA-
gi|12 : attTCTTAGAATTTCA-------ACACTTTTATTACA----AAAAAGCAAGATCCCCC---CCCCCAAAA-AA-A------ATACAGTCCATGAAC----GAAATTCTGC--TG-G---TTTAAAGA-C--------AT-T-------------AA-----------------TTGAT---C--ATTT-GAAT-----AT
gi|19 : tttATTTCAACACTTTTATT-TTTAAAAAAAAGCAAGATTT--G---CCCTAAAAAAAA-A------ATACTGTCCAGGAAC----GAAATTCTGC--TG-G---TTTAAAAA-tg
gi|20 : tttcttggaTTTTATC-CC----AAAAAGCAAGATTTTG----CCCC------AACA------TTACAGTCCAGGAACA---AAAATTGTTCTATA-G---TTTGAAAA-T--------AT-C-------------AA-----------------TTGAT---C--ATTTAA
gi|18 : AAAAGCAAGATTTTGC---CTCA------AA-A------TTATAGTTCAGGAAAAAATAAAATT-CCC--TG-GTTTTATAAGAA-T--------A----------------------A------------TTGATCATA--ATTTAAAAT-----Ag
gi|8 : aaattttaacTCTGC---CCCA------AA-A------TTACAGTCCAGGAA-A---AAAATTGTTC--TT-G---TTTAAAAA-T--------AT-T-------------AA--TTGATCATTTAAATTTTGA----A--ATTTAAAAT-----ATGC--GA----CTGGATT-TCAT--T-GTA-G-A-ATAC-ATGAAT-TA----T-A-----TTTTCTCTTCA-ATCT-CCGGTTTT-T-------GGCG-A-TT-TT-A-TA-T-TTTC-A--TAAAAA---A----
gi|3 : aaatttcataAA-T--------ATGT-------------AA----A------------TTGA----A--ATTTAAAAT-----TTGACGGA----CTGAGTTCTCAT--TCGTATG-T-CTAC-ATAAAT-TAGATTT-A-----TTTCGTCTCAA-ATCTACCAATTTTAG-------GGCG-A-TT-T-----G-T-TGTA-A---AAAAA---C----G---TC--ATT---TTA-CCTC--AAA-GAGGTCACATT-TTCCCA---TGGAG---A--C---ACAGCA-----GCCGGATGTTTTTT---TA---TGCTAATCG-TGTTAGAAG-GGTGAA-ATTGAGAATTTGA--A-T--TG-GTTT-TCATTG-TA--G-GGTA--CAC-GACATTA------TA-----TTTTTTTTT-CA-ACATT-TCATGTT-TT--G-GCGACA---TTA-C--TTATAAT------T-AAAAG---CCCA---------TCATT---TAACCCC-AA--A--TTCCA-----TTCC-ATC---G---ATACA-GC-A-GC----GA-T-TTTTA---------TTAA--T-GCTG-T
gi|15 : tccccttttccccaccaagaaacaagagccaatcttt-------------AA--G-G------------TTGA----A--ATTTAAAGT-----AGGT--GG----CTGGTTT-TCAT--T-GTA-G-ATATTT-AAAAAT-TA----T-A-----TTTTCTCTTCA-ATTT-CCAGTttgtatagatttttctgcatgaataaatcaataaataatatatgttgcaaattttagtttgaggttaggccaaaaaaatctagattgactaact
gi|7 : gaatgatattttctcttcatcattaa--T-G------------TTGA----GC-ATTTAAAAT-----TTGC--G------T---TT-TCAT--T-GTA-G-G-TTGC-AAAGAT-TA----T-A-----TTTTCTTTCCA-ATTT-CCAGTTTG-G-------GGCG-A-TT-TT---TA----------------------------------------AG-CC-C--AAA-A--TTCACATT-TTCCTA---TAGAG---A--T---ACGGCA-----GCCG-TT-TTTT
gi|11 : taaaaaacatcatttaaccccaaaatccccattttttcatcgagatacagcagccgttttttttattgTGA----C--ATTTAAAAT-----TTGA--GA----CTGGTTT-TCAT--t
gi|21 : ttatattttaaaaatacaccatttaaccacaaaattcccttttcccaacgagaaacaacagcctatttcttatatgttgataatttagaggaA----CTGTTTT-TCAT--T-GTA-G-G-TTAC-AGAGAT-TG----T-A-----TTTTCTCTCCA-ATTT-CCAGTTTT-T-------GACG-A-TT-TT---TA-T------A--TAAAAA---A----A---
gi|6 : T-TCAT--T-ATA-G-G-TTAC-ATAAAT-TA----T-A-----TTGTTTTTTCA-ATTT-CCAATTTT-G-------GGCG-ATTT-TT-A-TA-T-TTTA-A---AAAAA---C----G---CC--ATTAAATAA-CC-A--AAACA--TTCCCATT-TTCCCA---TCGAG---A--T---ACAGCA-----GCCG-AT-TTTTAT---TA---TGTTGacattat
gi|5 : gaTA-G-G-GTAC-ATGAAAATG----T-AATTCTTTTTCT-TTCAGATTT-CAAGTCTT-T-------GGGG-A-TT-TT---TA-T----A-A--TAAAAACAAACCC-A---TC--ATT---TAA-CC-TCTAAA-AC-TTCCATTA-TTCCCA---TCGAG---ATTA---CACACA-----GCCG-AA-TTTT-TGAATA---TGTTGtttgtatatattttcttgcatgaataatcaataaatcctacctgttgcatttagtttgaggttaggc
gi|13 : caatctagccatttttttttggcctaacctcaaactaaatgcaacagaaaggatttattgattattcatgcaagaaaaA----T-A-----TTTTCTCTTCA-ATCT-CCAGTGTT-T-------TGTG-A-TT-TT-A-TA-T-TTTA-ATTTTAAAA---A----A---TC--CTT---TAA-CC-C--AAA-A-----------TTCCCA---TCGAG---A--T---AAAACA-----GCCG-AT-TTTTAT---TA---TGTTGATtgtttgtatatattctc
gi|16 : TTTCTC--CA-ATTT-CCAGTTTT-T-------GGCG-A-TT-TT-A-TA-T-----------AAAA---A----A---TATCATT---TGACCC-C--AAA-A--TTCCCAT--TTTCCA---TCGAG---A--T---ACAGCA-----TCCG-AT-ATTTTT---AA---T
gi|17 : TTTCTTCA-ATTT-CCAGTTTT-G-------GGCG-A-TTACT-G-TA-T-TTTA-A--AAAAAA---A----G---TATCATT---TAACCC-C--GAA-A--TTGTCATT-TCTCCA---TCGAG---A--T---ATAGCA-----GTTG-A
gi|4 : -A-TT-TT-AACACT-TTTA-G--TAAAAA---A----AGCATG--ATT---TCC-CC-C--AAA-A--AT---TAC-AGCCCAGGATCTGGTTTA------AAAACA------------------T---TA----ATTGACAA-T-TCA-AAT-GTTGAA-ATTTAAAATATGG--AAT--TG-GTTT-TCATTG-TA--GAA-AA--CAT-GA-A-----------------GTTCTCTT-CA-AT-CT-CCAGTTT-TT--G-GCGA-A---TTTAA--ATATC-T-A------AAAAA---C--A---------TCATT---TAACCCC--A--AATTCCC--TTCTTCCC-ATCAAGATGTATACA-TC-AGCC----GA-T-TTTTATTATGTTCATCAT--T-TTTA-AGGT--------------T--GAATATTCAAAATATGAAG--GTT-G--T-TTT-CATA-GTAGGT-T--ACAT---AAATTATACATGTA----TT----TTCTCT----TCAAT-----T-T-C---CA-G-T-TTGG--G--G-CGT-T--TT-------T-T---TAT----ATTT----AA----AAA-A----CA-------AACAAATCGCCATT---TA-ACC-CC-AAA--TTCCCATT-TTCCAAACAAG----A-AACAA-------TAACT--GA-T---TT-TTA--AT
gi|11 : aatttcttaaactttcaa-TT-A-TA-T-TTTA-A---AAATA---C----A---CC--ATT---TAA-CCAC--AAA-A--TTCCCTT--TTCCCA---ACGAG---A--A---ACAACA-----GCCT-AT-TTCTTA---TA---TGTTGATAA-T-TTA-GAG-GATGAC-ATTTAAAATTTGA--GAC--TG-GTTT-TCAT
gi|14 : -T-TTTGTA--TAAAAA---ACGTCA---T----TT---TAT-CC-C--CAA-A--TTCACATT-TTCCCA---TTGAG---A--C---ACAGCA-----GCTG-AT-TTTTTT---CA---TGCTAATCG-T-TTA-AAG-GTTGAA-A-TTGAA
gi|7 : gat--TAAAAA---AC---A---TC--ATT---TAA-CC-CC-AAA-A--TCCCCATT-TTTTCA---TCGAG---A--T---ACAGCA-----GCCG--T-TTTTTT---TATTGTGTTGAGCA-T-TTA-A--------A-ATTT------------GC-----GTTT-TCATTG-TAG-G-T-TG--CAA-AG-ATTA------TA-----TTTTCTTTC-CA-AT-TT-CCAG-T--TT--G-GGGC-G------------ATT----------------------------------TT---TAAGCCC-AA--AATTCAC-ATT-TTCCT-ATAGA-G---ATACG-GC-AGCC----G--T-TTTT----------TT
gi|3 : --TCCCCTTT-TCCCCA---CCAAG---A--A---ACAAGA-----GCCA-AT-CTTTAA---TA---TGT-----------A-AA---TTGAA-ATTTAAAATTTGACGGAC--TGAGTTC-TCATTCGTAT-G-TCTA--CAT-AA-ATTAGATT--TA-----TTTCGTCTC-AA-AT-CTACCA-ATT-TTAGG-GCGA-----TT------TGTTGT-A----A-AAAAA---C--G---------TCATT---TTACCTC-AAAGAGGTCAC-ATT-TTCCC-ATGGA-G---ACACA-GC-AGCCGGATG--T-TTTT----------TTATGCTAATCG-TGTT-------AGAAGGGT--GAA-ATTGAGAATTTG----AATTGG--T-TTT-CATT-GTAGGG-TACAC-G---ACATTA------TATTTTTT----T----T----TCAAC---A-T-T-T---CATG-T-TT-T--G--G-CGACA--TTA------C-T---TAT----AATT----AA----AAGCC----CA-------TC---------ATT---TA-ACC-CCAAA----TTCCATT----CCATC--G----A-TACAG------C-AGCG--AT-TT--TTATTA--ATG--C-T
gi|15 : G-ATATTTTCT---C------TTCATCA-T-TAA-AAG-GTTGAA-ATTTAAAGTAGGT--GGC--TG-GTTT-TCATTG-TA--G-A-TATTTAA-AA-ATTA------TA-----TTTTCTCTT-CA-AT-TT-CCAGgtttgtatagatttttctgcatgaataaatcaataaataatatatgttgcaaattttagtttgaggttaggccaaaaaaatctagattgactaact
gi|9 : gaatTTGATCA-T-CTA-AAT-GTTGAA-ATTTAAAATACGA--GAC--TG-GATT-TCATAG-TA--GAA-TA--CAT-GA-ATGA------TA-----TTTTCTCTT-CA-t
gi|8 : atttcttgaaaatattttaacacttttattccaaaaagcaagattttgccccaaaattacagtccaggaacaaaaattgttctggtttgaaaatgttaaTTGATCA-T-TTA-AAT-TTTGAA-ATTTAAAATATGC--GAC--TG-GATT-TCATTG-TA--G-AATA--CAT-GA-ATTA------TA-----TTTTCTCTT-CA-AT-CT-CCGGTTT-TT--G-GCGA-----TTT-T--ATATTTTCA----T-AAAAA---
gi|21 : aaatttcatatctgccccaaaattacagtccaggaaaaaaattgttcttgtttaaaaatattaaC--TG-TTTT-TCATTG-TA--GGT-TA--CAG-AG-ATTG------TA-----TTTTCTCTC-CA-AT-TT-CCAGTTT-TT--G-ACGA-----TTT-------TTAT-A----T-AAAAA---A--A---------ACATT---a
gi|6 : aT-TCATTA-TA--GGT-TA--CAT-AA-ATTA------TA-----TTGTTTTTT-CA-AT-TT-CCA-ATT-TTG-G-GCGA-T---TTT-T--ATATTTT-A----A-AAAAA---C--G---------CCATTAAATAACCAA-AA--CATTCCC-ATT-TTCCC-ATCGA-G---ATACA-GC-AGCC----GA-T-TTTTA---------TTA---T-GTTG-Tat
gi|5 : ga-TA--CATGAA-AATG------TAATTCTTTTTCT-TT-CAGAT-TT-CAAGTCT-TT--G-GGGA-T---TTT-T--ATA-----A----T-AAAAA---C--AAACCCA---TCATT---TAACCTCTAA--AACTTCCATTA-TTCCC-ATCGAGA---TTACACAC-AGCC----GAAT-TTTT----------GAATA-T-GTTG-TGttgtatatattttcttgcatgaataatcaataaatcctacctgttgcatttagtttgaggttaggc
gi|13 : caatctagccatttttttttggcctaacctcaaactaaatgcaacagaaaggatttattgattattcatgcaagaaaatagggA------TA-----TTTTCTCTT-CA-AT-CT-CCAG-TGTTT--T-GTGA-----TTT-T--ATATTTT-AATTTT-AAAAA------A---------TCCTT---TAA-CCC-AA--AATTC----------CC-ATCGA-G---ATAAA-AC-AGCC----GA-T-TTTTA---------TTA---T-GTTG-tttgtatatattctc
gi|16 : TTTCTC---CA-AT-TT-CCAGTTT-TT--G-GCGA-----TTT-T--ATAT----A------AAAAA---T--A---------TCATT---TGACCCC-AA--AATTCCCA--T-TTTCC-ATCGA-G---ATACA-GC-ATCC----GA-T-ATTT----------TTAat
gi|17 : TTTCTT-CA-AT-TT-CCAGTTT-TG--G-GCGA-T---TAC-T--GTATTTT-A----A-AAAAAAAGT--A---------TCATT---TAACCCC-GA--AATTGTC-ATT-TCTCC-ATCGA-G---ATATA-GC-A-at
gi|10 : -TT--G-GACA-G---TTTTC--ATGTCGC-A--------AAA---T--A---------TCCCT---TAACCCA-AA--AGGTCCC-ATT-TTCCC-ATTGAGgttga
gi|11 : cagttT-T--ATATTTT-A----A-AAATA---C--A---------CCATT---TAACCAC-AA--AATTCCC--TT-TTCCC-AACGAGA---A-ACA-AC-A-GC----C--TATTTC----------TTATA-T-GTTGATAATTTAGAGGA------T--GAC-ATTTAAAATTTG-AG--ACTGG--T-TTT-CATacataaaaatatttatatttattttcttaatcaatattttgtttttgttacaattaatttgaggtttggcacaaa
gi|14 : TTGT-A----TAAAAAA---C--G---------TCATT---TTATCCC-CA--AATTCAC-ATT-TTCCC-ATTGA-G---ACACA-GC-AGCT----GA-T-TTTT----------TT
gi|7 : gattt-AAAAA---C--A---------TCATT---TAACCCC-AA--AATCCCC-ATT-TTTTC-ATCGA-G---ATACA-GC-AGCC----GT-T-TTTT----------TTAT--T-G-TG-T-----------------T--GAGCATTTAAAATTTG-C-------G--T-TTT-CATT-GTAGGT-T--GCAA---AGATTA------TA----TT----T----T----CTTTC-CAATT-T-C---CA-G-T-TTGG--G--G-CG--A--TT----------------------------------------------------------------TT---TA-AGC-CCAAAA--TTCACATT-TTCCTATAGAG----A-TACGG------C-AGCC--GT-TT--TT-TTcatgctaatcgtttaaaggttgaaattgaa
gi|3 : taTCCCCTTT-TCCCC-ACCAAGA---A-ACAAGA-G-CC----A--A-TCTT----------TAAT--A---TG-TAAA-------T------T--GAA-ATTTAAAATTTGACGG-ACT-GAGT-TCT-CATTCGTATGTCT--ACAT---AAATTA------GA----TT----TAT--T----TCGTCTCAA-A-T-CTACCA-A-T-TT-TAGG--G-CG--A--TT-------TGT---TGT----A-------AA----AAA-A----CG-------TC---------ATT---TT-ACC-TCAAAGAGGTCACATT-TTCCCATGGAG----A-CACAG------C-AGCCG-GA-TGTTTT-TTT--ATG--C-TAATCGTGTTAG--AAGG--GT--GAA-A-TTGAGAAT-TT----GAA--TT---GG-TTTTCATT-------GTAGGGTACAC----GACATTATATT------TT--TTTT--T--CA-ACATT-TCATG-TTT-TG---GCGACA-TTACT-TAT----AATT------A---AA----AG--CC-C--A---------TCATT--TAACCCC--AAA--TTCCA----TTCCATCGAT--A-CA----GCAG-CG--ATTT-TT-ATTAATGCTGTT--TGT---ATAG--A----TTTTT-CTGC-ATG-AATAAATCAATAAAT-AA---TATATGT-TG--CAAATTTT---AGTTTGAGG------TTAGGCCAAAAA
gi|4 : ------T--GAA-ATTTAAAATATG-GA--ATT-GG-T-TTT-CATT-GTAGAA-A--AC-------ATGA------AG----TT----C----TCT--TCAAT-C-----T-C---CA-G-T-TT-TT-G--G-CG--A--AT-------T-TAAATAT----C--T----AA----AAA-A----CA-------TC---------ATT---TA-ACC-CC-AAA--TTCCCTTC-TTCCCATCAAGATGTA-TACAT------C-AGCC--GA-T---TT-TTATTATG--T-TCATCATTTT-T--AAGG--TT--GAATATTCAA-AATATGAA--GG---TT---G--TTTTCATA-------GTAGGTTACAT----AA-ATTATACATGTATTTT--CTCT--T--CA-AT-TT-CCAGT-TTG-GG---GCG----TT-TT-TTT----A--T------ATTTAA----AA--AA-C--AAACAAATCGCCATT--TAACCCC--AAA--TTCCCATTTTCCAAACAAGAAA-CA----ATAACTG--ATTT-TT-Aaatctagattgactaact
gi|8 : aatttcttaaactttcaaattttaacacttttagtaaaaaaagcatgatttcccccaaaaattacagcccaggatctggtttaaaaacattaattgacaattcaaatgt------T--GAA-ATTTAAAATATG-CG--ACT-G--GATTT-CATT-GTAGAA-T--ACAT---GAATTA------TA----TT----TTCTCT----TCAAT-C-----T-C---CG-GTT-TT-T--G--G-CG--A--TT-------T-TA--TATTTTCA--T----AA----AAA-A----at
gi|15 : aaatttcatatctgccccaaaattacagtccaggaaaaaaattgttcttgtttaaaaatattaattgatcatttaaattt------T--GAA-ATTTAAAGTAGG-TG--GCT-GG-T-TTT-CATT-GTAGA--T--AT-TTAAAAATTA------TA----TT----TTCTCT----TCAAT-----T-T-C---CA-G-T-
gi|21 : gaatgatattttctcttcatcattaaaaggtACT-G--T-TTTTCATT-GTAGGT-T--ACAG---AGATTG------TA----TT----T----T----CTCTC-CAA-T-TTC---CA-G-T-TT-TT-G--A-CG--A--TT-------T-T---TAT----A--T----AA----AAA-A----
gi|6 : TT-CATT-ATAGGT-T--ACAT---AAATTA------TA----TTGTTTT----T----TCAAT-----T-T-C---CA-A-T-TT-T--G--GGCG--A--TT-------T-T---TAT----A--TTTTAAA----AAA-A----CG-------CC---------ATTAAATA-ACC-AAAACA--TTCCCATT-TTCCCATCGAG----A-TACAG------C-AGCC--GA-T---TT-TTATTATG--T-Taacattat
gi|13 : gaA------TA----TT----T----TCTCTTCAAT-C-----T-C---CA-G-TGTT-T--T--G-TG--A--TT-------T-T----AT----A--TTTT-AATTTTAAA-A----AA-------TC---------CTT---TA-ACC-C-AAAA-----------TTCCCATCGAG----A-TAAAA------C-AGCC--GA-T---TT-TTATTATG--T-TGATgtttgtatatattttcttgcatgaataatcaataaatcctacctgttgcatttagtttgaggttaggc
gi|5 : ----TC----T----T----TCAG---AT-T-T-C---AA-G-TCTT-T--G--G-GG--A--TT-------T-T---TATA---A--T----AA----AAACAAACCCA-------TC---------ATT---TA-ACCTCTAAAA--CTTCCATTATTCCCATCGAG----ATTACAC------ACAGCCG-AA-TT--TT-TGA--AT
gi|17 : caatctagccatttttttttggcctaacctcaaactaaatgcaacagaaaggatttattgattattcatgcaagaaaatagggtacatgaaaatgtaattctttt----TT----C----T----TCAAT-----T-T-C---CA-G-T-TT-T--G--GGCG--A--TTACTGTATT-T---TAA----A--A----AA----AAA-G----TA-------TC---------ATT---TA-ACC-CCGAAA--TTGTCATT-TCTCCATCGAG----A-TATAG------Catgttgtgtttgtatatattctc
gi|16 : tC-CAA-T-TTC---CA-G-T-TT-TT-G--G-CG--A--TT-------T-T----AT----A--T----AA----AAA-A----TA-------TC---------ATT---TG-ACC-CCAAAA--TTCCCATT-TT-CCATCGAG----A-TACAG------C-ATCC--GA-TAT-TT-TTA--ATagttga
gi|10 : tttct---CA-G-T-TT-T--G--GACA--G--TT-------T-T---CAT----G--T----CGC---AAA-A----TA-------TC---------CCT---TA-ACC-CAAAAG--GTCCCATT-TTCCCATTGAG----A-CATAA--------A-----AA-TA--TT-T
gi|9 : -T-TT-T--A--A-C---A--CT-------T-T---TAT-------TCC--AA----AAA-G----CA-------AG---------ATT---TT-GCC-CCAAAA--TTACAGT-----CCA--GGA----A-CAAAAATTGTTCTGGTTTGAA-AA--TG-TTA--AT-----TGATCA-TCTAA--AT-G--TT--GAA-ATTTAA-AAT-ACGA--GAC--TG---GATTT--CATA-------GTAGAATACAT----GA-ATGATA--------TT--TTCT--atatttattttcttaatcaatattttgtttttgttacaattaatttgaggtttggcacaaa
gi|14 : atttcttgaaaataG--A--TT-------T-T---TGT----A--T----AA----AAA-A----CG-------TC---------ATT---TT-ATC-CCCAAA--TTCACATT-TTCCCATTGAG----A-CACAG------C-AGCT--GATTT--TT-TTC--ATG--C-TAATCGTTTAA---AG-G--TT--GAA-ATTGAActtca
gi|11 : -T---TAT----A--TTTT-AA----AAATA----CA-------CC---------ATT---TA-ACC-ACAAAA--TTCCC-TT-TTCCCAACGAG----A-AACAA------C-AGCC--TA-TT--TC-TTAT-ATG--T-TGAT-AATTTAG--AG-G--AT--GAC-ATTTAA-AAT-TTGA--GA---CT---GG-TTTTCAT
gi|7 : --T----AA----AAA-A----CA-------TC---------ATT---TA-ACC-CCAAAA--TCCCCATT-TTTTCATCGAG----A-TACAG------C-AGCC--GT-TT--TT-TTT--AT----------------T--GT-G--TT--G-------AGC-AT-TTAA--AAT--TT---GCGTTTTCATT-------GTAGGTTGCAA----AG-ATTATA--------TT--TTCT--TTCCA-AT-TT-CCAGT-TTG-GG---GCG--A-TT-TT-T---------------------------A--AG--------------------------CCCAAAA--TTCACATTTTCCTATAG--AGA-TACG--GCAGCCG--TTTT-TT-
gi|5 : ------CTAGCC--AT-TT--TT-TTT---TGGCC-TAACC--TC-----AA-A--CT---AA-ATGCAACAG----AAAGGAT--TTATTGATTATTCATGCAAGAAAATAGGGTACATG---AA-AATGTAATTCT---TT--TTCT--TT-CAGAT-TT-CAAGT-CTT-TG---GGG--A-TT-TT-TAT----AA-T------A---AA----AACAAA-CCCA---------TCATT--TAACCTCTAAAAC-TTCCATTATTCCCATCG--AGATTACAC-ACAGCCGA-ATTT-TTGAAT-ATGTTGTGTTTGT---ATAT--A----TTCTC-t
gi|8 : caat--AA-TA--TT---A--AT-----TGATCATT---T--AA-A--TTTTGAA-ATTTAA-AAT-ATGC--GAC--TG---GATTT--CATT-------GTAGAATACAT----GA-ATTATA--------TT--TTCTCTT--CA-AT-CT-CCGGT-TTT-TG---GCG--A-TT-TTATATTTTCA--T------A---AA----AA--A
gi|15 : aaatttcatatctgccccaaaattacagtccaggaaaaaaattgttcttgtttaaa--AG-G--TT--GAA-ATTTAA-AGT----A--GGTGGCT---GGTTTT-CATT-------GTAG---ATATTTAAAA-ATTATA--------TT--TTCTCTT--CA-AT-TT-CCAGT-
gi|21 : gaatgatattttctcttcatcattaaaGTTTTTCATT-------GTAGGTTACAG----AG-ATTGTA--------TT--TTCT--CTCCA-AT-TT-CCAGT-TTT-TG---ACG--A-TT-TT-TAT----A--TA-----A---AA----AA--AA-C--A---------TTAT
gi|6 : actTTCATT-------ATAGGTTACAT----AA-ATTATA--------TTGTTTTT--T--CA-AT-TT-CCAAT-TTT-GG---GCG--A-TT-TT-TAT----A--TTTT---A---AA----AA--AA-C--G---------CCATT--AAATAACCAAAACATTCCCATTTTCCCATCGAGATA-CA----GCAGCCG--ATTT-TT-ATT-ATGTTGTT--TGT---ATAT--A----TTTTC-TTGC-ATG-AAT-AATCAATAAAT-CC---TACCTGT-TG--CAT---TT---AGTTTGAGG------TTAGGC
gi|13 : gaATA--------TT--TTCTCTT--CA-AT-CT-CCAGTGTTT-TG----TG--A-TT-TTATAT----T--T------T---AATTTTAA--AA-A--A---------TCCTT--TAACCC--AAAA--TTCC--------CATCGAGATA-AA----ACAGCCG--ATTT-TT-ATT-ATGTTG
gi|16 : T--TTCT--C--CA-AT-TT-CCAGT-TTT-TG---GCG--A--T-TT-TAT----A--T------A---AA----AA--A--T--A---------TCATT--TGA-CCCCAAAA--TTCCCA-TTTTCCATCGAGATA-CA----GCATCCGATATTT-TT-Aat
gi|17 : T--TTCT--T--CA-AT-TT-CCAGT-TTT-GG---GCG--A-TT-AC-TGT----A--TTTTAAAA---AA----AA--AG-T--A---------TCATT--TAA-CCCCGAAA--TTGTCATTTCTCCATCGAGATA-TA----GCAGTTG--Aat
gi|10 : CAGT-TTT-GG---ACA--G-TT-TT-CAT----G--T------C---GC----AA--AA-T--A---------TCCCT--TAA-CCCAAAAG--GTCCCATTTTCCCATTGAGACA-TA----AAA------ATAT-TT-A---------------T---ATTT--A----TTTTC-T----------T-AATCAATATTT-TG---TTTTTGT-TA--CAA---TT---AATTTGAGG------TTTGGCACAAA
gi|14 : G--A-TT-TT-TGT----A--T------A---AA----AA--A--C--G---------TCATT--TTATCCCCAAA---TTCACATTTTCCCATTGAGACA-CA----GCAGCTG--ATTT-TT-TTC-ATGCT
gi|11 : T-TAT----A--TTTT---A---AA----AA--TA-C--A---------CCATT--TAACCAC-AAAA--TTCCC-TTTTCCCAACGAGAAA-CA----ACAGCCT--ATTTCTT-AT--ATGTTGaatcgtttaaaggttgaaattgaa
gi|7 : ---AA----AA--AA-C--A---------TCATT--TAACCCC-AAAA--TCCCCATTTTTTCATCGAGATA-CA----GCAGCCGTTTTTT-TT-ATT-GTGTTGAG--CATTTAAAAT--TTGCGTTTTCATTGT-AGG---T-TG-CAA-AGAT-TATATTTTCT-T-TC--CAA---TTTCCAGTTTGGGGCGATTTTTAAGCCCAAAAataatttagaggatgacatttaaaatttgagactggttttcat
gi|25 : t--ATTT-TT-ATT-ATGTTGTT--TGT---ATAT--G----TTTTC-TTGC-ATG-AAT-ttcacattttcctatagagatacggcagccgttttttt
gi|5 : ----TTTTC-TTGC-ATG-AAT-AATCAATAAAT-CC---TTTCTGT-TG--CAT---TT---AGTTTGAGG------TTAGGCCAAAAAgacta
gi|28 : caatctagccatttt-CA---TTTCTGT-TG--CAA---TT---ACTTTGATG------TT-TGGCCAAtagggtacatgaaaatgtaattctttttctttcagatttcaagtctttggggatttttataataaaaacaaacccatcatttaacctctaaaacttccattattcccatcgagattacacacagccgaatttttgaatatgttgtgtttgtatatattctc
gi|23 : ---TTTCTGT-TC--CAA---TT---AGTTTGAGG------TTAGGCCGAAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|26 ): GGTTTTTCGTAGAATTTCAACACTTTTATTAAAAAAAGC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG
Alignments
lowQualScore : 1 111111 1111111 1111 444444444444 11111 99999999999999999999999999999999999999999999 1111 11111 1111 11 111 2222222 222 1 1111 22222222222 11 22 11 11 222222 1 444444 11 1 333333333 11 1 1 33333333 1 3333333333333 1 1 444444444444444444444444444444 3333 11 33333333 11 1 111 222 1 1 1 2222 2222 1 1 222 22222 22 111 222222 11 111
lowQualScore : 0 888888 5 6666666 2222 111111111111 77777 222 66 4 777 4 5 33333333333333333333333333333333333333333333 3333 22222 1 7777 6 11 555 8 11 6 3 1111111 6 5 5 5 000 77 3 6 6 1 4444 77777777777 1 6 6 1 6 2 8 8 8 8 3 8 11 3 33 1 33 11 888888 3 88 0 222222 11 6 222222222 0 00 3 0 6 1 1 5 3 0 11 0 33333333 0 1 5555555555555 0 2 0 3 555555555555555555555555555555 0 4444 11 88 4 5 00000000 99 5 11 0 3 444 2 8 8 222 8 0 0 6 0 1 0000 0000 9 0 3 666 3 1 6 6 55555 99 55 6 6 6 5 000 5 5 77 000000 77 5 77 99 1 9 99 2 6 2 77 55 2 5 1 5 5 66 0 333 5 0 5 5 5 5 5 66 888 2
lowQualScore : . ...... . ....... .... ............ ..... ... .. . ... . . ............................................ .... ..... . .... . .. ... . .. . . ....... . . . . ... .. . . . . .... ........... . . . . . . . . . . . . .. . .. . .. .. ...... . .. . ...... .. . ......... . .. . . . . . . . . .. . ........ . . ............. . . . . .............................. . .... .. .. . . ........ .. . .. . . ... . . . ... . . . . . . .... .... . . . ... . . . . ..... .. .. . . . . ... . . .. ...... .. . .. .. . . .. . . . .. .. . . . . . .. . ... . . . . . . . .. ... .
lowQualScore : 0 111111 7 9999999 0000 777777777777 99999 777 11 4 888 4 0 44444444444444444444444444444444444444444444 9999 55555 0 0000 6 00 000 0 44 7 5 7777777 7 7 7 7 999 99 3 7 7 0 0000 88888888888 0 3 7 0 7 5 0 0 0 0 8 0 00 5 88 0 88 22 888888 2 88 0 555555 22 0 000000000 8 22 7 3 7 7 0 2 5 3 88 0 22222222 0 0 0000000000000 0 5 0 2 555555555555555555555555555555 2 5555 00 88 8 6 88888888 44 6 00 0 2 000 2 0 0 000 0 0 0 0 0 2 5555 8888 0 0 3 333 8 0 7 7 88888 22 00 7 7 7 7 000 7 7 99 333333 99 7 99 22 0 3 22 5 7 5 77 88 5 7 4 0 0 99 2 888 0 1 7 7 7 7 0 99 888 5
consensus : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AAAAAAGCAAGATTTC---GCCCC-----A------AAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-------------G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATT-TT-ATAT-TTTAA--TAAAAAA--ATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACANCAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG--AG--TTTTATATT-TA-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAT-TGTTGTGANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTT-TG-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGAG---ACACAGC-A-GCCGA---TTTT-TTTATG-CTAAT-CGTTCTANAAG--T-TGAAATTGAA-AAT-TCGANA-TTGGTTTTTCATTGTAGGGTACAT-AA-ATTATA-----TT--TTCTTT-CA-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTATA--T---AAAAA--AA-C--ATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATTA-TGT--TGTTTGTATA---TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
Reference ( family-552 ) : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----NAAAAAGCAAGATTTC---GCCCC-----C------AAATTACAGTCCAGGAACA---AAAATTNTNC--TG-GTT---T-AAAAAT-ATT-------------AA--T-------------G------------TTGA-A--ATTTAA-----AATATGNG----ACTGGTTTTCAT--TGTAG-GNTAC-ATGAATTA-TATTTTCTCTTCAATTTCCAGTTTT-------TGGCG-ATT-TT-ATAT-TTTAA--TAAAAAA--ATCATTTAA-CC-C-AAAATTCCCNT-TTTCCCATCGAG----AT-----ACAGCAGCCGAT-TTTTNTTA-TGTTGATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATTGTA--GNTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG--A---TTTTATATT-TA-AAAAACA---------TCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAT-TGTTGTGATATGAA-ATTTAAAATNTGN--G--ACT-G--TTTTCATT-GTAGGT-TACATAAATTATA----T----TT--TTC------AATCAAT-TCCAGTTT-T--GGCGA--TTT-TTATATAAAAAACA-------TCATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGAG---ATACAGC-A-GCCGA---TTTT-TTAATG-CTGAT-CGTTCTATAAG--T-TGAAATTTAA-AAT-TTGAGATTTGGTTTTTCATTGTAGGNTACAT-AA-ATTATA-----TT--TTCTT--CA-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTATA--T---AAAAA--AA-C--ATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-NACA--GCAGCCG-ATTTTT-ATTA-TGT--TGTTTGTATA---TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCCAAAA
gi|1 : TCTT-AAGA----A-A-TTTCAACACTTTTATT-T----AAAAAAGCAAGACCCCCAATCCCC-----CAAAAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCGTT---TAAAAAAC-ATT-------------AACTT-------------GATCCAT------TTGA-ATTATTGAATATTGAAAATGAGAACCACTAGTTTT-ATCCTGTAATAATACGATGAATTATTATTTTCTCTTCAATCTCCAGTTTTTTTTTTCTGGCGCATT-TTGAAAT-TTTAAG-CAAAACA--TTCATTTAAGCC-CAAAAATTCGCTTCCTTTCCATCGAGC---ATGAATCACGCCGACCGAT-TTTTATTACTGTTTTTCAA-TTTAAAGCGTTGAA-ATTT-AAATATGAGGCATTGTTTTCTCATGGTACGGCTT--CACCAAATTA------TA-TTTCTCTTTCAATTTCCAGTTTTTGCGCG--GATTTTTTATATT-TAGAAAAACA---------CCATTTAAACAGAAAATTCCC--CTTTCCCACCAAGAAAACAAGAGCCGATCTATTAATATGT--AGATTGGAA-ATTTAAAATTTGA--G--ACTGG--TTTTCATT-GTATGT-TACATAAATTATAATTTT----TT--TTC-------TTCAATCTCCATTTT-TGCGGCGGATTTT-TTGTATAAAAAACGAAAAAATTCATTTATACCCC-TAA--TTCACATTTT-CAATCGAGGACAAACAGC-AGGCCGA---TTTTGTTTATGCCTAATGCGAT-TA-AAGGTT-TGAAATTGAA-AATCTTGACA-TTGGCTTTCAATTGTAGGGTACAT-AA-ATTATATT---TT--TTCTT--CA-AT-TTCCCAGTTTTGTGCGCGCAATT-TT--TTATA--T---AAAAA--AACC--ATCATTAATAA-CCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACAGCGCAGCCG-A-TTTT-ATTA-TGT--TATTTGTATAT--TATTTTCCTTGCTATGAAAT-AATCAATAAATAAATTTCTGTCTGGCCAA---TTAG-TTGAGGTTAGGCCCAAAA
gi|10 : ttCAGTTTT-GG---ACAG-T-TT--TCATG--T---CGCAA--AA-T--ATCCCT--TAACCCA-AAAG--GTCCCATT-TTCCCATTGAGA-CATA--AAAA---------------------TATTTATATT---TATTTT-CT----------T-AATCAATATTT-TGTTTTTGT-TA--CAA---TTAATTTGAGGTTTGGCACAAAatatggctagattgactaacta
gi|11 : -TT-ATAT-TTTAA---AAATAC--ACCATTTAA-CCAC-AAAATTCCC-T-TTTCCCAACGAG----AA-----ACAACAGCCTAT-TTCTTATA-TGTTGATA-A-TTTAGAG-GATGAC-ATTTAAAATTTGAGAC-TGGTTT--TCAT
gi|12 : A-A-TTTCAACACTTTTATTAC----AAAAAAGCAAGATCCC---CCCCC-----CCAAAA-AAAATACAGTCCATGAAC----GAAATTCTGC--TG-GTT---T-AAAGAC-ATT-------------AA-----------------------------TTGATC--ATTT-G-----AATAT
gi|13 : ttttcttagA-TATTTTCTCTTCAATCTCCAGTGTT-------TTGTG-ATT-TT-ATAT-TTTAATTTTAAAAA--ATCCTTTAA-CC-C-AAAA---------TTCCCATCGAG----AT-----AAAACAGCCGAT-TTTTATTA-TGTTGATtg
gi|14 : GA--TTT-TTGTATAAAAAACG-------TCATTTT-ATCCCCAAA--TTCACATTTTCCCATTGAG---ACACAGC-A-GCTGAT--TTTT-TTCATG-CTAAT-CGTT-TAAAGG--T-TGAAATTGAA-
gi|15 : GATATTTTCTC----TTCATC-A-TTAAAAG-GTTGAA-ATTTAAAGTAGGTGGC-TGGTTT--TCATTGTA--GATATTTA-AAAATTA------TATTTTCTC-TTCAATTTCCAGT
gi|16 : gaatTTTCTC---CAATTTCCAGTTTTTG-GCG--A---TTTTATAT---A-AAAAATA---------TCATTTGACCCCAAAATTCCC-ATTTT-CCATCGA-GATACAGCATCCGATATTTTTA
gi|17 : TTTCTTCAATTTCCAGTTTT-------GGGCG-ATTACT-GTAT-TTTAA--AAAAAAAGTATCATTTAACCC-C-GAAATTGTCAT-TTCTCCATCGAG----AT-----ATAGCAGTTGAat
gi|18 : AAAAGCAAGATTTT---GCCTC-----A------AAATTATAGTTCAGGAAAAAATAAAATTC-CC--TG-GTTTTAT-AAGAATAATT-------------GA--T-------------C------------AT---A--ATTTAA-----AATA
gi|19 : aaattttaacA-A-TTTCAACACTTTTATT-TTTAAAAAAAAGCAAGATTT----GCCCTAAAAAA------AAAATACTGTCCAGGAAC----GAAATTCTGC--TG-GTT---T-AAAAA
gi|2 : tttcttggTCTT-AAAATTTCATA-TTTTAATACTTTTATT-C----CAAAAAGCAAGATTTT---GACCC-----C------AAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTA---T-GAAAAT-ATC-------------AA--T-------------G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATT-TT-ATAT-TTTAA--TAAAAAA--ATAATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AG-----AAAACAGCCGAT-TTTTCTTA-TGTTGATC-A-TTTAAAG-GTTGGA-ATTTGAAATATGAGGC-TGGTTT--TCATTTTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGATGTTG-GCG--AG--TTTCATATTGTATAAAAACA---------CCATTTAACCCCAAAATTCCCAATTTTTCCATCGAGGATACAGCA-CCG-TTTTTTTAT-TGTTGTGACATGAA-ATTTAAAATTTGC--GCCACT-G--TTTTCATT-GTAGGT-TAC-TAGATTATA----T----TT--TTC------AACCAAT-TCCAGTTT-T--GGCGA--TTT-TTATATAAAAAACA-------TAATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGAG---ATACAGCTA-GCCAA---TATT-TTAATG-CTAAT-CACTCCATAAG--T-TGAAATTTAACAAT-TCAAGATTTGGTTTTTCATGGTAGGGTACAT-AA-ATTATA-----TT--TTCTT--CA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTATA--T---AAAAA--AG-C--ATCATT--TAACCCCCAAAA--TTCCAATT-TTTCCATCGACA-GATA--GCAGCCG-ATTTTT-ATTA-TGT--TGTGTGTATA---TCTTTT-CTCGC-ATG-AAT-TATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTATGCCCAAAA
gi|20 : TTTTATC-C----CAAAAAGCAAGATTTT---GCCCC-----A------ACATTACAGTCCAGGAACA---AAAATTGTTCTATA-GTT---T-GAAAAT-ATC-------------AA-----------------------------TTGATC--ATTTAA-----
gi|21 : GTTTTTCATTGTAGGTTACAG-AG-ATTGTA-----TT--TTCTCTCCA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTATA--TA--AAAAA--AA-C--ATTATg
gi|23 : actTTTCTGT-TC--CAA---TTAGTTTGAGGTTAGGCCGAAA
gi|25 : -ATTTTT-ATTA-TGT--TGTTTGTATA---TGTTTT-CTTGC-ATG-AAT-GAcaaatggctacatatatattgaccagat
gi|26 : A-A-TTTCAACACTTTTATT-A----AAAAAAGCcta
gi|28 : ggtttttcgtag-CATTTCTGT-TG--CAA---TTACTTTGATGTTTGGCC
gi|3 : TCCCC-TTTTCCCCACCAAGAA-ACAAGAGCCAATCTTT--AA-TAT-GTAAATTGAA-ATTTAAAATTTGACGG--ACT-GAGTTCTCATTCGTATGTCTACATAAATTAGA----T----TTATTTCGTCTCAAATCTA---CCAATTT-TAGGGCGA--TTTGTTGTA-AAAAAACG-------TCATTTT-ACCTCAAAGAGGTCACATTTTCCCATGGAG---ACACAGC-A-GCCGGATGTTTT-TTTATG-CTAAT-CGTGTTAGAAG--GGTGAAATTGAG-AAT-TTGAA--TTGGTTTT-CATTGTAGGGTACAC-GACATTATA-----TT--TTTTTTTCA-ACATT-TCATGTTT-TG---GCGA-CATTACTTATAATT---AAAAG--CC-C--ATCATT--TAACCCC--AAA--TTCC-ATT----CCATCGA---TACA--GCAGC-G-ATTTTT-ATTAATGC--TGTTTGTATA---GATTTT-TCTGC-ATG-AATAAATCAATAAAT-AATATATGT-TG--CAAATTTTAGTTTGAGGTTAGGCCAAAAAaa
gi|4 : TCTT-AAACTTTCA-AATTTTAACACTTTTAGT-A----AAAAAAGCATGATTTC---CCCCA-----A------AAATTACAGCCCAGGA--------------TC--TG-GTT---T-AAAAAC-ATT-------------AA--TTGACAATTCAAATG------------TTGA-A--ATTTAA-----AATATGGA----ATTGGTTTTCAT--TGTAG-AAAAC-ATGAA-------GTTCTCTTCAATCTCCAGTTTT-------TGGCG-AAT-TT-AAATATCTA----AAAAAC--ATCATTTAA-CC-C-CAAATTCCCTT-CTTCCCATCAAGATGTAT-----ACATCAGCCGAT-TTTTATTA-TGTTCATC-ATTTTTAAG-GTTGAATATTCAAAATATGAAGG-TTGTTT--TCATAGTAG-GTTA--CA-TAAATTATACATGTATTTTCTC-TTCAATTTCCAGTTTGGG-GCGTTT---TTTTATATT-TA-AAAAACAAACAAATCGCCATTTAACCCC-AAATTCCC-ATTTTCCAAACAAGAA-ACAATAACTGATTTTTaatctagattgactaact
gi|5 : aatt-ATTA-CAT--T-TTCATGTACCCTATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTTTCTGT-TG--CAT---TTAGTTTGAGGTTAGGCCAAAAAaat
gi|5 : caatctagccattttTAGGGTACATGAA-AATGTAATTCTTT--TTCTTT-CAGAT-TT-CAAGTCTT-TG---GGGA-T-TT--TTATAA-T---AAAAACAAA-CCCATCATT--TAACCTCTAAAA--CTTCCATTATTCCCATCGAGATTACAC-ACAGCCGAATTTTTGAATA-TGTTGTGTTTGTATA---TATTCT-Ctctttttctttcagatttcaagtctttggggatttttataataaaaacaaacccatcatttaacctctaaaacttccattattcccatcgagattacacacagccgaatttttgaatatgttgtgtttgtatatattctc
gi|6 : caatctagccatttttttttggcctaacctcaaactaaatgcaacagaaaggatttattgattattcatgcaagaaaaTTCATTATAGGTTACAT-AA-ATTATA-----TTGTTTTTT--CA-AT-TT-CCAATTTT-GG---GCGA-T-TT--TTATA--TTTTAAAAA--AA-C--GCCATT--AAATAACCAAAACATTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATTA-TGT--TGTTTGTATA---TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTACCTGT-TG--CAT---TTAGTTTGAGGTTAGGC
gi|7 : ga-TA-AAAAACA---------TCATTTAACCCCAAAATCCCC-ATTTTTTCATCGA-GATACAGCAGCCGTTTTTTTTAT-TG-TGT----TGAGCATTTAAAATTTGC---------G--TTTTCATT-GTAGGT-TGCAAAGATTATA----TTTTCTT--TCC------AAT---T-TCCAGTTTGG--GGCGA--TT--------------------------TTTA-AGCCCAAAA--TTCACATTTTCCTATAGAG---ATACGGC-A-GCCGT---TTTT-TT
gi|8 : ---GCCCC-----A------AAATTACAGTCCAGGAA-A---AAAATTGTTC--TT-GTT---T-AAAAAT-ATT-------------AA--TT------------GATCATTTAAATTTTGA-A--ATTTAA-----AATATGCG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCGGTTTT-------TGGCG-ATT-TT-ATAT-TTTCA--TAAAAAA--
gi|9 : aaatttcatatctTCTTGAAAAT-----A-TTTTAACACTTTTATT-C----CAAAAAGCAAGATTTT---GCCCC-----A------AAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTT---T-GAAAAT-GTTAATTGATCATCTAAA--T-------------G------------TTGA-A--ATTTAA-----AATACGAG----ACTGGATTTCAT--AGTAG-AATAC-ATGAATGA-TATTTTCTCTTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG
Alignments
lowQualScore : 1 111111 111111 1111 333333 11111 99999999999999999999999999999999 1111 11111 1111 11 2222222 222 11 33333333333 11 22 11 11 222222 1 33333 11 1 333333333 11 1 1 3333 1 3333333333333 1 1 444444444444444444444444444444 222 11 2222222 11 11 11111 11 11 111 11111 11 22222222 22222222 11111 222222 111 1 11 111
lowQualScore : 0 888888 5 444444 4 2222 555555 44444 2 0 66 4 777 4 5 33333333333333333333333333333333 3333 22222 7777 6 11 8 8 11 6 6666666 8 6 6 111 8 8 8 0 33 77777777777 1 6 1 6 1 8 8 8 8 3 8 11 1 33 1 33 11 888888 3 88 0 77777 11 6 222222222 0 00 3 0 6 1 1 5 3 0 11 0 4444 1 0 5555555555555 0 1 0 3 555555555555555555555555555555 0 222 11 88 5 6666666 99 5 11 3 8 11 6 6 44444 6 6 99 11 8 888 1 88888 8 33 00000000 1 3 44444444 6 6 66666 5 5 5 5 5 5 5 5 888 5 5 66 5 66 888888 5 333 77 3 77 0 5 0 5 33 6 5 1 5 5 77 5 5 1 6 6 6 77 5 77 000 1
lowQualScore : . ...... . ...... . .... ...... ..... . . .. . ... . . ................................ .... ..... .... . .. . . .. . ....... . . . ... . . . . .. ........... . . . . . . . . . . . .. . .. . .. .. ...... . .. . ..... .. . ......... . .. . . . . . . . . .. . .... . . ............. . . . . .............................. . ... .. .. . ....... .. . .. . . .. . . ..... . . .. .. . ... . ..... . .. ........ . . ........ . . ..... . . . . . . . . ... . . .. . .. ...... . ... .. . .. . . . . .. . . . . . .. . . . . . . .. . .. ... .
lowQualScore : 0 111111 7 888888 4 0000 000000 11111 6 7 11 4 888 4 0 44444444444444444444444444444444 9999 55555 0000 0 00 0 0 44 7 0000000 0 7 7 555 0 0 0 8 00 00000000000 0 7 0 7 0 0 0 0 0 8 0 00 0 88 2 88 22 888888 2 88 0 88888 22 0 000000000 8 22 7 3 7 7 0 2 5 3 88 0 0000 0 0 0000000000000 0 0 0 2 555555555555555555555555555555 2 555 00 88 6 0000000 44 6 00 2 0 00 7 7 33333 7 7 00 00 0 666 0 44444 0 88 55555555 7 2 22222222 7 7 77777 7 7 7 7 7 7 7 0 888 0 0 99 0 99 111111 0 888 99 7 99 7 7 7 7 66 6 0 4 7 7 99 7 7 7 7 7 7 77 7 99 000 0
consensus : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-AN--TTTTATATT-TA-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAT-TGT-GTGANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTAAAGG-T-TGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T------AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
Reference ( family-552 ) : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACANCAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-AG--TTTTATATT-TA-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAT-TGTTGTGANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGTTCTANAAG-T-TGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T------AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
gi|1 : TCTT-AAGA----A-A-TTTCAACACTTTTATT-T----AA-AAAAGCAAGACCCCCAATCCCCCAAAAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCGTT---TAAAAAAC-ATT-------------AACTT-GATCCAT------TTGA-ATTATTGAATATTGAAAATGAGAACCACTAG-TTTTATCCTGTAATAATACGATGAATTATTATTTTCTCTTCAATCTCCAGTTTTTTTTTTCTGGCGCATTTTGAAAT-TTTAAG-CAAAACATTCATTTAAGCC-CAAAAATTCGCTTCCTTTCCATCGAGC---ATGAATCACGCCGACCGAT-TTTTATTACTGTTTTTCAA-TTTAAAGCGTTGAA-ATTT-AAATATGAGGCATTGTTTTCTCATGGTACGGCTT--CACCAAATTA------TA-TTTCTCTTTCAATTTCCAGTTTTTGCGCG-GATTTTTTATATT-TAGAAAAACA---------CCATTTAAACAGAAAATTCCC--CTTTCCCACCAAGAAAACAAGAGCCGATCTATTAATATGT--AGATTGGAA-ATTTAAAATTTGA--G--ACTGG--TTTTCATT-GTATGT-TACATAAATTATAATTTT----TT--TTC-------TTCAATCTCCATTTTT-GCGGCGGATTTT-TTGTATAAAAAACGAAAAAATTCATTTATACCCC-TAA--TTCACATTTT-CAATCGAGGACAAACAGC-AGGCCGA---TTTTGTTT-ATGC-CTAA--TGCGAT-TAAAGGTT-TGAAATTGAA-A--ATCTTGACA-TTGGCTTTCAATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTTTCTT-C-A-AT-TTCCCAGTTTTGTGCGCGCAATT-TT--TTAT-A--T------AAAAA-AAC--CATCATTAATAA-CCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACAGCGCAGCCG-A-TTTT-ATT-ATGT--TATTTGTATATTATTTTCCTTGCTATGAAAT-AATCAATAAATAAATTTCTGTCTGGCCAA---TTAG-TTGAGGTTAGGCCCAAAA
gi|10 : ttCAGTTTT-GG---ACAG-T-TT--TCAT-G--T------CGCAA-AA---TATCCCT--TAACCCA-AAAG--GTCCCATT-TTCCCATTGAGA-CATA--AAAA---------------------TATTTATATT-TATTTT-CT----------T-AATCAATATTT-TGTTTTTGT-TA--CAA---TTAATTTGAGGTTTGGCACAAAatatggctagattgactaacta
gi|11 : TT-ATAT-TTTAA---AAATACACCATTTAA-CCAC-AAAATTCCCTT--TTCCCAACGAG----AA-----ACAACAGCCTAT-TTCTTATA-TGTTGATA-A-TTTAGAG-GATGAC-ATTTAAAATTTGAGAC-TGGTTT--TCAT
gi|12 : A-A-TTTCAACACTTTTATTAC----AA-AAAAGCAAGATCCC---CCCCCCCAAA-AAAAATACAGTCCATGAACG---AAA-TTCTGC--TG-GTT---T-AAAGAC-ATT-------------AA-----------------TTGATC--ATTT-G-----AATAT
gi|13 : ttttcttagA-TATTTTCTCTTCAATCTCCAGTGTT-------TTGTG-ATTTT-ATAT-TTTAATTTTAAAAAATCCTTTAA-CC-C-AAAA---------TTCCCATCGAG----AT-----AAAACAGCCGAT-TTTTATTA-TGTTGATtg
gi|14 : GA--TTT-TTGTATAAAAAACG-------TCATTTT-ATCCCCAAA--TTCACATTTTCCCATTGA-GAC--ACAGC-A-GCTGA---TTTT-TTTCATG--CTAA--T-CGTT-TAAAGG-T-TGAAATTGAA-
gi|15 : GATATTTTCTC----TTCATC-A-TTAAAAG-GTTGAA-ATTTAAAGTAGGTGGC-TGGTTT--TCATTGTA--GATATTTA-AAAATTA------TATTTTCTC-TTCAATTTCCAGT
gi|16 : gaatTTTCTC---CAATTTCCAGTTTTTG-GCG-A---TTTTATAT---A-AAAAATA---------TCATTTGACCCCAAAATTCCC-ATTTT-CCATCGA-GATACAGCATCCGATATTTTTA
gi|17 : T-TTCT-T--C-A-AT-TT-CCAGTTTT-GG---GCGA-T-TA--CTGT-A--TTTTAAAAAAAA-AG---TATCATT--TAACCCC-GAAA--TTGTCATT-TCTCCATCGAGA-TATA--GCAGTTG-Aat
gi|18 : TT-T----AACAAAAGCAAGATTTT---GCCTC------AAAATTATAGTTCAGGAAAAAATAAAATTC-CC--TG-GTTTTAT-AAGAATAATT-------------GA--T-C------------AT---A--ATTTAA-----AATA
gi|19 : aaatA-A-TTTCAACACTTTTATT-TTTAAAA-AAAAGCAAGATTT----GCCCTAAAAA-AAAAATACTGTCCAGGAAC----GAAATTCTGC--TG-GTT---T-AAAAA
gi|2 : tttcttggTCTT-AAAATTTCATA-TTTTAATACTTTTATT-C----CA-AAAAGCAAGATTTT---GACCC------CAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTA---T-GAAAAT-ATC-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATAATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AG-----AAAACAGCCGAT-TTTTCTTA-TGTTGATC-A-TTTAAAG-GTTGGA-ATTTGAAATATGAGGC-TGGTTT--TCATTTTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGATGTTG-GCG-AG--TTTCATATTGTATAAAAACA---------CCATTTAACCCCAAAATTCCCAATTTTTCCATCGAGGATACAGCA-CCG-TTTTTTTAT-TGTTGTGACATGAA-ATTTAAAATTTGC--GCCACT-G--TTTTCATT-GTAGGT-TAC-TAGATTATA----T----TT--TTC------AACCAAT-TCCAGTTTT---GGCGA--TTT-TTATATAAAAAACA-------TAATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGA-GAT--ACAGCTA-GCCAA---TATT-TTA-ATG--CTAA--T-CACTCCATAAG-T-TGAAATTTAACA--AT-TCAAGATTTGGTTTTTCATGG--------TAGGGTACAT-AA-ATTATA-----TT-TTC--TT-C-A-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--T------AAAAA-AG---CATCATT--TAACCCCCAAAA--TTCCAATT-TTTCCATCGACA-GATA--GCAGCCG-ATTTTT-ATT-ATGT--TGTGTGTATA-TCTTTT-CTCGC-ATG-AAT-TATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTATGCCCAAAA
gi|20 : TTTTATC-C----CA-AAAAGCAAGATTTT---GCCCC------AACATTACAGTCCAGGAACA---AAAATTGTTCTATA-GTT---T-GAAAAT-ATC-------------AA-----------------TTGATC--ATTTAA-----
gi|21 : GTTTTTCATTG--------TAGGTTACAG-AG-ATTGTA-----TT-TTCT-CT-CCA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--TA-----AAAAA-AA---CATTATg
gi|23 : actTTTCTGT-TC--CAA---TTAGTTTGAGGTTAGGCCGAAA
gi|25 : -ATTTTT-ATT-ATGT--TGTTTGTATA-TGTTTT-CTTGC-ATG-AAT-GAcaaatggctacatatatattgaccagat
gi|26 : A-A-TTTCAACACTTTTATT-A----AA-AAAAGCcta
gi|28 : ggtttttcgtag-CATTTCTGT-TG--CAA---TTACTTTGATGTTTGGCCA
gi|3 : TCCCC-TTTTCCCCACCAAGAA-ACAAGAGCCAATCTTT--AA-TAT-GTAAATTGAA-ATTTAAAATTTGACGG--ACT-GAGTTCTCATTCGTATGTCTACATAAATTAGA----T----TTATTTCGTCTCAAATCTA---CCAATTTTAG-GGCGA--TTTGTTGTA-AAAAAACG-------TCATTTT-ACCTCAAAGAGGTCACATTTTCCCATGGA-GAC--ACAGC-A-GCCGGATGTTTT-TTT-ATG--CTAA--T-CGTGTTAGAAG-GGTGAAATTGAG-A--AT-TTGA-A-TTGGTTTT-CATTG--------TAGGGTACAC-GACATTATA-----TT-TTTT-TTTC-A-ACATT-TCATGTTT-TG---GCGA-CATTACTTAT-AATT------AAAAG-CC---CATCATT--TAACCCC--AAA--TTCC-ATT----CCATCGA---TACA--GCAG-CG-ATTTTT-ATTAATGC--TGTTTGTATA-GATTTT-TCTGC-ATG-AATAAATCAATAAAT-AATATATGT-TG--CAAATTTTAGTTTGAGGTTAGGCCAAAAA
gi|4 : TCTT-AAACTTTCA-AATTTTAACACTTTTAGT-A----AA-AAAAGCATGATTTC---CCCCA------AAAATTACAGCCCAGGA--------------TC--TG-GTT---T-AAAAAC-ATTAATTGACAATTCAAA--T-G------------TTGA-A--ATTTAA-----AATATGGA----ATTGGTTTTCAT--TGTAG-AAAAC-ATGAA-------GTTCTCTTCAATCTCCAGTTTT-------TGGCG-AATTT-AAATATCTA----AAAAACATCATTTAA-CC-C-CAAATTCCCTT-CTTCCCATCAAGATGTAT-----ACATCAGCCGAT-TTTTATTA-TGTTCATC-ATTTTTAAG-GTTGAATATTCAAAATATGAAGG-TTGTTT--TCATAGTAG-GTTA--CA-TAAATTATACATGTATTTTCTC-TTCAATTTCCAGTTTGGG-GCGTTT--TTTTATATT-TA-AAAAACAAACAAATCGCCATTTAACCCC-AAATTCCC-ATTTTCCAAACAAGAA-ACAATAACTGATTTTTaatctagattgactaact
gi|5 : aatt-A-GCC-A---TTTT-TTT-TTGGCCTAACCT-CAAACTAAA-----TGCAACAGAA-AGGAT-T---TA-TTGATTATTCAT-GCAAGAAAATAGGGTACATGAA-AATGTAATTCTTT-TTCT-TT-C-AGAT-TT-CAAGTCTT-TG---GGGA-T-TT--TTATAA--T------AAAAACAAACCCATCATT--TAACCTCTAAAA--CTTCCATTATTCCCATCGAGATTACAC-ACAGCCGAATTTTTGAAT-ATGTTGTGTTTGTATA-TATTCT-Caat
gi|6 : caatctTTCATTA--------TAGGTTACAT-AA-ATTATA-----TTGTTTT-TT-C-A-AT-TT-CCAATTTT-GG---GCGA-T-TT--TTAT-A--TTTT---AAAAA-AA---CGCCATT--AAATAACCAAAACATTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTACCTGT-TG--CAT---TTAGTTTGAGGTTAGGC
gi|7 : ga-TA-AAAAACA---------TCATTTAACCCCAAAATCCCC-ATTTTTTCATCGA-GATACAGCAGCCGTTTTTTTTAT-TGT-----GTTGAGCATTTAAAATTTGC---------G--TTTTCATT-GTAGGT-TGCAAAGATTATA----TTTTCTT--TCC------AAT---T-TCCAGTTTG-G-GGCGA--TT--------------------------TTTA-AGCCCAAAA--TTCACATTTTCCTATAGA-GAT--ACGGC-A-GCCG----TTTT-TTT-
gi|8 : ---GCCCC------AAAATTACAGTCCAGGAA-A---AAAATTGTTC--TT-GTT---T-AAAAAT-ATT-------------AA--TTGATCATTTAAATTTTGA-A--ATTTAA-----AATATGCG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCGGTTTT-------TGGCG-ATTTT-ATAT-TTTCA--TAAAAAA
gi|9 : aaatttcatatctTCTTGAAAAT-----A-TTTTAACACTTTTATT-C----CA-AAAAGCAAGATTTT---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTT---T-GAAAAT-GTTAATTGATCATCTAAA--T-G------------TTGA-A--ATTTAA-----AATACGAG----ACTGGATTTCAT--AGTAG-AATAC-ATGAATGA-TATTTTCTCTTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG
Alignments
lowQualScore : 1 111111 111111 1111 333333 11111 99999999999999999999999999999999 1111 11111 1111 11 2222222 222 11 33333333333 11 22 11 11 222222 1 33333 11 1 333333333 11 1 1 11111 1 3333333333333 1 1 444444444444444444444444444444 222 11 2222222 11 11 11111 11 11 111 11 22222222 22222222 11111 222222 111 1 11 111
lowQualScore : 0 888888 5 444444 4 2222 555555 77777 2 0 66 4 777 4 5 33333333333333333333333333333333 3333 22222 7777 6 11 8 8 11 6 6666666 8 6 6 111 8 8 8 0 33 77777777777 1 6 1 6 1 8 8 8 8 3 8 11 1 33 1 33 11 888888 3 88 0 55555 11 6 222222222 0 00 3 0 6 1 1 5 3 0 4 0 55555 0 5555555555555 0 1 0 3 555555555555555555555555555555 0 222 11 88 5 6666666 99 5 11 3 8 11 6 6 44444 6 6 99 11 8 555 8 3 88 8 33 00000000 1 3 44444444 6 6 66666 5 5 5 5 5 5 5 5 888 5 5 66 5 66 888888 5 333 77 3 77 0 5 0 5 33 6 5 1 5 5 77 5 5 1 6 6 6 77 5 77 000 1
lowQualScore : . ...... . ...... . .... ...... ..... . . .. . ... . . ................................ .... ..... .... . .. . . .. . ....... . . . ... . . . . .. ........... . . . . . . . . . . . .. . .. . .. .. ...... . .. . ..... .. . ......... . .. . . . . . . . . . . ..... . ............. . . . . .............................. . ... .. .. . ....... .. . .. . . .. . . ..... . . .. .. . ... . . .. . .. ........ . . ........ . . ..... . . . . . . . . ... . . .. . .. ...... . ... .. . .. . . . . .. . . . . . .. . . . . . . .. . .. ... .
lowQualScore : 0 111111 7 888888 4 0000 000000 99999 6 7 11 4 888 4 0 44444444444444444444444444444444 9999 55555 0000 0 00 0 0 44 7 0000000 0 7 7 555 0 0 0 8 00 00000000000 0 7 0 7 0 0 0 0 0 8 0 00 0 88 2 88 22 888888 2 88 0 88888 22 0 000000000 8 22 7 3 7 7 0 2 5 8 0 0 00000 0 0000000000000 0 0 0 2 555555555555555555555555555555 2 555 00 88 6 0000000 44 6 00 2 0 00 7 7 33333 7 7 00 00 0 222 0 2 66 0 88 55555555 7 2 22222222 7 7 77777 7 7 7 7 7 7 7 0 888 0 0 99 0 99 111111 0 888 99 7 99 7 7 7 7 66 6 0 4 7 7 99 7 7 7 7 7 7 77 7 99 000 0
consensus : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-TA-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTANTG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T------AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
Reference ( family-552 ) : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--NTTTTATATT-TA-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTATTG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T------AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
gi|1 : TCTT-AAGA----A-A-TTTCAACACTTTTATT-T----AA-AAAAGCAAGACCCCCAATCCCCCAAAAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCGTT---TAAAAAAC-ATT-------------AACTT-GATCCAT------TTGA-ATTATTGAATATTGAAAATGAGAACCACTAG-TTTTATCCTGTAATAATACGATGAATTATTATTTTCTCTTCAATCTCCAGTTTTTTTTTTCTGGCGCATTTTGAAAT-TTTAAG-CAAAACATTCATTTAAGCC-CAAAAATTCGCTTCCTTTCCATCGAGC---ATGAATCACGCCGACCGAT-TTTTATTACTGTTTTTCAA-TTTAAAGCGTTGAA-ATTT-AAATATGAGGCATTGTTTTCTCATGGTACGGCTT--CACCAAATTA------TA-TTTCTCTTTCAATTTCCAGTTTTTGCGCG-GATTTTTTATATT-TAGAAAAACA---------CCATTTAAACAGAAAATTCCC--CTTTCCCACCAAGAAAACAAGAGCCGA-TCTATTAATA-TGTAGATTGGAA-ATTTAAAATTTGA--G--ACTGG--TTTTCATT-GTATGT-TACATAAATTATAATTTT----TT--TTC-------TTCAATCTCCATTTTT-GCGGCGGATTTT-TTGTATAAAAAACGAAAAAATTCATTTATACCCC-TAA--TTCACATTTT-CAATCGAGGACAAACAGC-AGGCCGA---TTTTGTTT-ATGC-CTAA--TGCGAT-TA-AAGGTTTGAAATTGAA-A--ATCTTGACA-TTGGCTTTCAATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTTTCTT-C-A-AT-TTCCCAGTTTTGTGCGCGCAATT-TT--TTAT-A--T------AAAAA-AAC--CATCATTAATAA-CCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACAGCGCAGCCG-A-TTTT-ATT-ATGT--TATTTGTATATTATTTTCCTTGCTATGAAAT-AATCAATAAATAAATTTCTGTCTGGCCAA---TTAG-TTGAGGTTAGGCCCAAAA
gi|10 : ttCAGTTTT-GG---ACAG-T-TT--TCAT-G--T------CGCAA-AA---TATCCCT--TAACCCA-AAAG--GTCCCATT-TTCCCATTGAGA-CATA--AAAA---------------------TATTTATATT-TATTTT-CT----------T-AATCAATATTT-TGTTTTTGT-TA--CAA---TTAATTTGAGGTTTGGCACAAAatatggctagattgactaacta
gi|11 : TT-ATAT-TTTAA---AAATACACCATTTAA-CCAC-AAAATTCCCTT--TTCCCAACGAG----AA-----ACAACAGCCTAT-TTCTTATA-TGTTGATA-A-TTTAGAG-GATGAC-ATTTAAAATTTGAGAC-TGGTTT--TCAT
gi|12 : A-A-TTTCAACACTTTTATTAC----AA-AAAAGCAAGATCCC---CCCCCCCAAA-AAAAATACAGTCCATGAAC----GAAATTCTGC--TG-GTT---T-AAAGAC-ATT-------------AA-----------------TTGATC--ATTT-G-----AATAT
gi|13 : ttttcttagA-TATTTTCTCTTCAATCTCCAGTGTT-------TTGTG-ATTTT-ATAT-TTTAATTTTAAAAAATCCTTTAA-CC-C-AAAA---------TTCCCATCGAG----AT-----AAAACAGCCGAT-TTTTATTA-TGTTGATtg
gi|14 : GA--TTT-TTGTATAAAAAACG-------TCATTTT-ATCCCCAAA--TTCACATTTTCCCATTGA-GAC--ACAGC-A-GCTGA---TTTT-TTTCATG--CTAA--T-CGTT-TA-AAGG-TTGAAATTGAA-
gi|15 : GATATTTTCTC----TTCATC-A-TTAAAAG-GTTGAA-ATTTAAAGTAGGTGGC-TGGTTT--TCATTGTA--GATATTTA-AAAATTA------TATTTTCTC-TTCAATTTCCAGT
gi|16 : gaatTTTCTC---CAATTTCCAGTTTTTG-GCG-A---TTTTATAT---A-AAAAATA---------TCATTTGACCCCAAAATTCCC-ATTTT-CCATCGA-GATACAGCATCCGATATTTTTA
gi|17 : T-TTCT-T--C-A-AT-TT-CCAGTTTT-GG---GCGA-T-TA--CTGT-A--TTTTAAAAAAAA-AG---TATCATT--TAACCCC-GAAA--TTGTCATT-TCTCCATCGAGA-TATA--GCAGTTG-Aat
gi|18 : TT-T----AACAAAAGCAAGATTTT---GCCTC------AAAATTATAGTTCAGGAAAAAATAAAATTC-CC--TG-GTTTTAT-AAGAATAATT-------------GA--T-C------------AT---A--ATTTAA-----AATA
gi|19 : aaatA-A-TTTCAACACTTTTATT-TTTAAAA-AAAAGCAAGATTT----GCCCTAAAAA-AAAAATACTGTCCAGGAAC----GAAATTCTGC--TG-GTT---T-AAAAA
gi|2 : tttcttggTCTT-AAAATTTCATA-TTTTAATACTTTTATT-C----CA-AAAAGCAAGATTTT---GACCC------CAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTA---T-GAAAAT-ATC-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATAATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AG-----AAAACAGCCGAT-TTTTCTTA-TGTTGATC-A-TTTAAAG-GTTGGA-ATTTGAAATATGAGGC-TGGTTT--TCATTTTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGATGTTG-GCG-A--GTTTCATATTGTATAAAAACA---------CCATTTAACCCCAAAATTCCCAATTTTTCCATCGAGGATACAGCA-CCG-TTTTTTTATTGTTGT-GACATGAA-ATTTAAAATTTGC--GCCACT-G--TTTTCATT-GTAGGT-TAC-TAGATTATA----T----TT--TTC------AACCAAT-TCCAGTTTT---GGCGA--TTT-TTATATAAAAAACA-------TAATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGA-GAT--ACAGCTA-GCCAA---TATT-TTA-ATG--CTAA--T-CACTCCA-TAAG-TTGAAATTTAACA--AT-TCAAGATTTGGTTTTTCATGG--------TAGGGTACAT-AA-ATTATA-----TT-TTC--TT-C-A-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--T------AAAAA-AG---CATCATT--TAACCCCCAAAA--TTCCAATT-TTTCCATCGACA-GATA--GCAGCCG-ATTTTT-ATT-ATGT--TGTGTGTATA-TCTTTT-CTCGC-ATG-AAT-TATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTATGCCCAAAA
gi|20 : TTTTATC-C----CA-AAAAGCAAGATTTT---GCCCC------AACATTACAGTCCAGGAACA---AAAATTGTTCTATA-GTT---T-GAAAAT-ATC-------------AA-----------------TTGATC--ATTTAA-----
gi|21 : GTTTTTCATTG--------TAGGTTACAG-AG-ATTGTA-----TT-TTCT-CT-CCA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--TA-----AAAAA-AA---CATTATg
gi|23 : actTTTCTGT-TC--CAA---TTAGTTTGAGGTTAGGCCGAAA
gi|25 : -ATTTTT-ATT-ATGT--TGTTTGTATA-TGTTTT-CTTGC-ATG-AAT-GAcaaatggctacatatatattgaccagat
gi|26 : A-A-TTTCAACACTTTTATT-A----AA-AAAAGCcta
gi|28 : ggtttttcgtag-CATTTCTGT-TG--CAA---TTACTTTGATGTTTGGCCA
gi|3 : TCCCC-TTTTCCCCACCAAGAA-ACAAGAGCCAATCTTT--AATA-TGT-AAATTGAA-ATTTAAAATTTGACGG--ACT-GAGTTCTCATTCGTATGTCTACATAAATTAGA----T----TTATTTCGTCTCAAATCTA---CCAATTTTAG-GGCGA--TTTGTTGTA-AAAAAACG-------TCATTTT-ACCTCAAAGAGGTCACATTTTCCCATGGA-GAC--ACAGC-A-GCCGGATGTTTT-TTT-ATG--CTAA--T-CGTGTTAGAAGG-GTGAAATTGAG-A--AT-TTGA-A-TTGGTTTT-CATTG--------TAGGGTACAC-GACATTATA-----TT-TTTT-TTTC-A-ACATT-TCATGTTT-TG---GCGA-CATTACTTAT-AATT------AAAAG-CC---CATCATT--TAACCCC--AAA--TTCC-ATT----CCATCGA---TACA--GCAG-CG-ATTTTT-ATTAATGC--TGTTTGTATA-GATTTT-TCTGC-ATG-AATAAATCAATAAAT-AATATATGT-TG--CAAATTTTAGTTTGAGGTTAGGCCAAAAA
gi|4 : TCTT-AAACTTTCA-AATTTTAACACTTTTAGT-A----AA-AAAAGCATGATTTC---CCCCA------AAAATTACAGCCCAGGA--------------TC--TG-GTT---T-AAAAAC-ATTAATTGACAATTCAAA--T-G------------TTGA-A--ATTTAA-----AATATGGA----ATTGGTTTTCAT--TGTAG-AAAAC-ATGAA-------GTTCTCTTCAATCTCCAGTTTT-------TGGCG-AATTT-AAATATCTA----AAAAACATCATTTAA-CC-C-CAAATTCCCTT-CTTCCCATCAAGATGTAT-----ACATCAGCCGAT-TTTTATTA-TGTTCATC-ATTTTTAAG-GTTGAATATTCAAAATATGAAGG-TTGTTT--TCATAGTAG-GTTA--CA-TAAATTATACATGTATTTTCTC-TTCAATTTCCAGTTTGGG-GCGTT--TTTTTATATT-TA-AAAAACAAACAAATCGCCATTTAACCCC-AAATTCCC-ATTTTCCAAACAAGAA-ACAATAACTGATTTTTaatctagattgactaact
gi|5 : aatt-A-GCC-A---TTTT-TTT-TTGGCCTAACCT-CAAACTA-AA----TGCAACAGAA-AGGAT-T---TA-TTGATTATTCAT-GCAAGAAAATAGGGTACATGAA-AATGTAATTCTTT-TTCT-TT-C-AGAT-TT-CAAGTCTT-TG---GGGA-T-TT--TTATAA--T------AAAAACAAACCCATCATT--TAACCTCTAAAA--CTTCCATTATTCCCATCGAGATTACAC-ACAGCCGAATTTTTGAAT-ATGTTGTGTTTGTATA-TATTCT-Caat
gi|6 : caatctTTCATTA--------TAGGTTACAT-AA-ATTATA-----TTGTTTT-TT-C-A-AT-TT-CCAATTTT-GG---GCGA-T-TT--TTAT-A--TTTT---AAAAA-AA---CGCCATT--AAATAACCAAAACATTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTACCTGT-TG--CAT---TTAGTTTGAGGTTAGGC
gi|7 : ga-TA-AAAAACA---------TCATTTAACCCCAAAATCCCC-ATTTTTTCATCGA-GATACAGCAGCCGTTTTTTTTATTG-TG-----TTGAGCATTTAAAATTTGC---------G--TTTTCATT-GTAGGT-TGCAAAGATTATA----TTTTCTT--TCC------AAT---T-TCCAGTTTG-G-GGCGA--TT--------------------------TTTA-AGCCCAAAA--TTCACATTTTCCTATAGA-GAT--ACGGC-A-GCCG----TTTT-TTT-
gi|8 : ---GCCCC------AAAATTACAGTCCAGGAA-A---AAAATTGTTC--TT-GTT---T-AAAAAT-ATT-------------AA--TTGATCATTTAAATTTTGA-A--ATTTAA-----AATATGCG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCGGTTTT-------TGGCG-ATTTT-ATAT-TTTCA--TAAAAAA
gi|9 : aaatttcatatctTCTTGAAAAT-----A-TTTTAACACTTTTATT-C----CA-AAAAGCAAGATTTT---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTT---T-GAAAAT-GTTAATTGATCATCTAAA--T-G------------TTGA-A--ATTTAA-----AATACGAG----ACTGGATTTCAT--AGTAG-AATAC-ATGAATGA-TATTTTCTCTTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG
Alignments
lowQualScore : 1 111111 111111 1111 333333 11111 99999999999999999999999999999999 1111 11111 1111 11 2222222 222 11 33333333333 11 22 11 11 222222 1111 2222222222 222222222 1 1 11111 1 3333333333333 1 1 444444444444444444444444444444 222 11 2222222 11 11 11111 11 11 111 11 22222222 22222222 11111 111 111 111 11 111
lowQualScore : 0 888888 5 444444 4 2222 555555 77777 2 0 66 4 777 4 5 33333333333333333333333333333333 3333 22222 7777 6 11 8 8 11 6 6666666 8 6 6 111 8 8 8 0 33 77777777777 1 6 1 6 1 8 8 8 8 3 8 11 1 33 1 33 11 888888 3 6 0 8 8888 3 3333333333 666666666 1 77 4 1 8 3 1 0 1 0 55555 0 5555555555555 0 1 0 3 555555555555555555555555555555 0 222 11 88 5 6666666 99 5 11 3 8 11 6 6 44444 6 6 99 11 8 555 8 3 88 8 33 00000000 1 3 44444444 6 6 66666 6 6 6 6 6 6 6 5 000 5 5 77 5 77 555 5 555 99 1 9 99 2 6 2 6 55 6 5 1 5 5 77 5 5 1 6 6 6 77 5 77 000 1
lowQualScore : . ...... . ...... . .... ...... ..... . . .. . ... . . ................................ .... ..... .... . .. . . .. . ....... . . . ... . . . . .. ........... . . . . . . . . . . . .. . .. . .. .. ...... . . . . .... . .......... ......... . .. . . . . . . . . ..... . ............. . . . . .............................. . ... .. .. . ....... .. . .. . . .. . . ..... . . .. .. . ... . . .. . .. ........ . . ........ . . ..... . . . . . . . . ... . . .. . .. ... . ... .. . . .. . . . . .. . . . . . .. . . . . . . .. . .. ... .
lowQualScore : 0 111111 7 888888 4 0000 000000 99999 6 7 11 4 888 4 0 44444444444444444444444444444444 9999 55555 0000 0 00 0 0 44 7 0000000 0 7 7 555 0 0 0 8 00 00000000000 0 7 0 7 0 0 0 0 0 8 0 00 0 88 2 88 22 888888 2 7 6 0 2222 8 5555555555 777777777 7 44 0 4 7 0 7 8 0 0 00000 0 0000000000000 0 0 0 2 555555555555555555555555555555 2 555 00 88 6 0000000 44 6 00 2 0 00 7 7 33333 7 7 00 00 0 222 0 2 66 0 88 55555555 7 2 22222222 7 7 77777 7 7 7 7 7 7 7 7 000 7 7 99 7 99 777 7 777 22 0 3 22 5 7 5 7 88 7 7 4 7 7 99 7 7 7 7 7 7 77 7 99 000 0
consensus : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
Reference ( family-552 ) : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTANTG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
gi|1 : TCTT-AAGA----A-A-TTTCAACACTTTTATT-T----AA-AAAAGCAAGACCCCCAATCCCCCAAAAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCGTT---TAAAAAAC-ATT-------------AACTT-GATCCAT------TTGA-ATTATTGAATATTGAAAATGAGAACCACTAG-TTTTATCCTGTAATAATACGATGAATTATTATTTTCTCTTCAATCTCCAGTTTTTTTTTTCTGGCGCATTTTGAAAT-TTTAAG-CAAAACATTCATTTAAGCC-CAAAAATTCGCTTCCTTTCCATCGAGC---ATGAATCACGCCGACCGAT-TTTTATTACTGTTTTTCAA-TTTAAAGCGTTGAA-ATTT-AAATATGAGGCATTGTTTTCTCATGGTACGGCTT--CACCAAATTA------TA-TTTCTCTTTCAATTTCCAGTTTTTGCGCG-GATTTTTTATATT-T-----AGAAAAACA---------CCATTTAAACAGAAAATTCCC--CTTTCCCACCAAGAAAACAAGAGCCGA-TCTATTAATA-TGTAGATTGGAA-ATTTAAAATTTGA--G--ACTGG--TTTTCATT-GTATGT-TACATAAATTATAATTTT----TT--TTC-------TTCAATCTCCATTTTT-GCGGCGGATTTT-TTGTATAAAAAACGAAAAAATTCATTTATACCCC-TAA--TTCACATTTT-CAATCGAGGACAAACAGC-AGGCCGA---TTTTGTTT-ATGC-CTAA--TGCGAT-TA-AAGGTTTGAAATTGAA-A--ATCTTGACA-TTGGCTTTCAATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTTTCTT-C-A-AT-TTCCCAGTTTTGTGCGCGCAATT-TT--TTAT-A--T---AAAAA-AAC--CATCATTAATAA-CCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACAGCGCAGCCG-A-TTTT-ATT-ATGT--TATTTGTATATTATTTTCCTTGCTATGAAAT-AATCAATAAATAAATTTCTGTCTGGCCAA---TTAG-TTGAGGTTAGGCCCAAAA
gi|10 : ttCAGTTTT-GG---ACAG-T-TT--TCAT-G--T---CGCAA-AA---TATCCCT--TAACCCA-AAAG--GTCCCATT-TTCCCATTGAGA-CATA--AAAA---------------------TATTTATATT-TATTTT-CT----------T-AATCAATATTT-TGTTTTTGT-TA--CAA---TTAATTTGAGGTTTGGCACAAAatatggctagattgactaacta
gi|11 : TT-ATAT-TTTAA---AAATACACCATTTAA-CCAC-AAAATTCCCTT--TTCCCAACGAG----AA-----ACAACAGCCTAT-TTCTTATA-TGTTGATA-A-TTTAGAG-GATGAC-ATTTAAAATTTGAGAC-TGGTTT--TCAT
gi|12 : A-A-TTTCAACACTTTTATTAC----AA-AAAAGCAAGATCCC---CCCCCCCAAA-AAAAATACAGTCCATGAAC----GAAATTCTGC--TG-GTT---T-AAAGAC-ATT-------------AA-----------------TTGATC--ATTT-G-----AATAT
gi|13 : ttttcttagA-TATTTTCTCTTCAATCTCCAGTGTT-------TTGTG-ATTTT-ATAT-TTTAATTTTAAAAAATCCTTTAA-CC-C-AAAA---------TTCCCATCGAG----AT-----AAAACAGCCGAT-TTTTATTA-TGTTGATtg
gi|14 : GA--TTT-TTGTATAAAAAACG-------TCATTTT-ATCCCCAAA--TTCACATTTTCCCATTGA-GAC--ACAGC-A-GCTGA---TTTT-TTTCATG--CTAA--T-CGTT-TA-AAGG-TTGAAATTGAA-
gi|15 : GATATTTTCTC----TTCATC-A-TTAAAAG-GTTGAA-ATTTAAAGTAGGTGGC-TGGTTT--TCATTGTA--GATATTTA-AAAATTA------TATTTTCTC-TTCAATTTCCAGT
gi|16 : gaatTTTCTC---CAATTTCCAGTTTTTG-GCG-A--TTTT-ATAT--------A-AAAAATA---------TCATTTGACCCCAAAATTCCC-ATTTT-CCATCGA-GATACAGCATCCGATATTTTTAAT
gi|17 : TTTC-TTCAATTTCCAGTTTTGG-GCG-A--TTACTGTATT-TTAAAAA-AAAAGTA---------TCATTTAACCCCGAAATTGTC-ATTTCTCCATCGA-GATATAGCAGTTGA
gi|18 : TT-T----AACAAAAGCAAGATTTT---GCCTC------AAAATTATAGTTCAGGAAAAAATAAAATTC-CC--TG-GTTTTAT-AAGAATAATT-------------GA--T-C------------AT---A--ATTTAA-----AATA
gi|19 : aaatA-A-TTTCAACACTTTTATT-TTTAAAA-AAAAGCAAGATTT----GCCCTAAAAA-AAAAATACTGTCCAGGAAC----GAAATTCTGC--TG-GTT---T-AAAAA
gi|2 : tttcttggTCTT-AAAATTTCATA-TTTTAATACTTTTATT-C----CA-AAAAGCAAGATTTT---GACCC------CAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTA---T-GAAAAT-ATC-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATAATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AG-----AAAACAGCCGAT-TTTTCTTA-TGTTGATC-A-TTTAAAG-GTTGGA-ATTTGAAATATGAGGC-TGGTTT--TCATTTTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGATGTTG-GCG-A--GTTTCATATTGT-----ATAAAAACA---------CCATTTAACCCCAAAATTCCCAATTTTTCCATCGAGGATACAGCA-CCG-TTTTTTTATTGTTGT-GACATGAA-ATTTAAAATTTGC--GCCACT-G--TTTTCATT-GTAGGT-TAC-TAGATTATA----T----TT--TTC------AACCAAT-TCCAGTTTT---GGCGA--TTT-TTATATAAAAAACA-------TAATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGA-GAT--ACAGCTA-GCCAA---TATT-TTA-ATG--CTAA--T-CACTCCA-TAAG-TTGAAATTTAACA--AT-TCAAGATTTGGTTTTTCATGG--------TAGGGTACAT-AA-ATTATA-----TT-TTC--TT-C-A-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--T---AAAAA-AG---CATCATT--TAACCCCCAAAA--TTCCAATT-TTTCCATCGACA-GATA--GCAGCCG-ATTTTT-ATT-ATGT--TGTGTGTATA-TCTTTT-CTCGC-ATG-AAT-TATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTATGCCCAAAA
gi|20 : TTTTATC-C----CA-AAAAGCAAGATTTT---GCCCC------AACATTACAGTCCAGGAACA---AAAATTGTTCTATA-GTT---T-GAAAAT-ATC-------------AA-----------------TTGATC--ATTTAA-----
gi|21 : GTTTTTCATTG--------TAGGTTACAG-AG-ATTGTA-----TT-TTCT-CT-CCA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--TA--AAAAA-AA---CATTATg
gi|23 : actTTTCTGT-TC--CAA---TTAGTTTGAGGTTAGGCCGAAA
gi|25 : -ATTTTT-ATT-ATGT--TGTTTGTATA-TGTTTT-CTTGC-ATG-AAT-GAcaaatggctacatatatattgaccagat
gi|26 : A-A-TTTCAACACTTTTATT-A----AA-AAAAGCcta
gi|28 : ggtttttcgtag-CATTTCTGT-TG--CAA---TTACTTTGATGTTTGGCCA
gi|3 : TCCCC-TTTTCCCCACCAAGAA-ACAAGAGCCAATCTTT--AATA-TGT-AAATTGAA-ATTTAAAATTTGACGG--ACT-GAGTTCTCATTCGTATGTCTACATAAATTAGA----T----TTATTTCGTCTCAAATCTA---CCAATTTTAG-GGCGA--TTTGTTGTA-AAAAAACG-------TCATTTT-ACCTCAAAGAGGTCACATTTTCCCATGGA-GAC--ACAGC-A-GCCGGATGTTTT-TTT-ATG--CTAA--T-CGTGTTAGAAGG-GTGAAATTGAG-A--AT-TTGA-A-TTGGTTTT-CATTG--------TAGGGTACAC-GACATTATA-----TT-TTTT-TTTC-A-ACATT-TCATGTTT-TG---GCGA-CATTACTTAT-AATT---AAAAG-CC---CATCATT--TAACCCC--AAA--TTCC-ATT----CCATCGA---TACA--GCAG-CG-ATTTTT-ATTAATGC--TGTTTGTATA-GATTTT-TCTGC-ATG-AATAAATCAATAAAT-AATATATGT-TG--CAAATTTTAGTTTGAGGTTAGGCCAAAAA
gi|4 : TCTT-AAACTTTCA-AATTTTAACACTTTTAGT-A----AA-AAAAGCATGATTTC---CCCCA------AAAATTACAGCCCAGGA--------------TC--TG-GTT---T-AAAAAC-ATTAATTGACAATTCAAA--T-G------------TTGA-A--ATTTAA-----AATATGGA----ATTGGTTTTCAT--TGTAG-AAAAC-ATGAA-------GTTCTCTTCAATCTCCAGTTTT-------TGGCG-AATTT-AAATATCTA----AAAAACATCATTTAA-CC-C-CAAATTCCCTT-CTTCCCATCAAGATGTAT-----ACATCAGCCGAT-TTTTATTA-TGTTCATC-ATTTTTAAG-GTTGAATATTCAAAATATGAAGG-TTGTTT--TCATAGTAG-GTTA--CA-TAAATTATACATGTATTTTCTC-TTCAATTTCCAGTTTGGG-GCGTT--TTTTTATATT-T-----A-AAAAACAAACAAATCGCCATTTAACCCC-AAATTCCC-ATTTTCCAAACAAGAA-ACAATAACTGATTTTTaatctagattgactaact
gi|5 : aatt-A-GCC-A---TTTT-TTT-TTGGCCTAACCT-CAAACTA-AA----TGCAACAGAA-AGGAT-T---TA-TTGATTATTCAT-GCAAGAAAATAGGGTACATGAA-AATGTAATTCTTT-TTCT-TT-C-AGAT-TT-CAAGTCTT-TG---GGGA-T-TT--TTATAA--T---AAAAACAAACCCATCATT--TAACCTCTAAAA--CTTCCATTATTCCCATCGAGATTACAC-ACAGCCGAATTTTTGAAT-ATGTTGTGTTTGTATA-TATTCT-Caat
gi|6 : caatctTTCATTA--------TAGGTTACAT-AA-ATTATA-----TTGTTTT-TT-C-A-AT-TT-CCAATTTT-GG---GCGA-T-TT--TTAT-A--TTTTAAAAA-AA---CGCCATT--AAATAACCAAAACATTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTACCTGT-TG--CAT---TTAGTTTGAGGTTAGGC
gi|7 : ga-T-----A-AAAAACA---------TCATTTAACCCCAAAATCCCC-ATTTTTTCATCGA-GATACAGCAGCCGTTTTTTTTATTG-TG-----TTGAGCATTTAAAATTTGC---------G--TTTTCATT-GTAGGT-TGCAAAGATTATA----TTTTCTT--TCC------AAT---T-TCCAGTTTG-G-GGCGA--TT--------------------------TTTA-AGCCCAAAA--TTCACATTTTCCTATAGA-GAT--ACGGC-A-GCCG----TTTT-TTT-
gi|8 : ---GCCCC------AAAATTACAGTCCAGGAA-A---AAAATTGTTC--TT-GTT---T-AAAAAT-ATT-------------AA--TTGATCATTTAAATTTTGA-A--ATTTAA-----AATATGCG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCGGTTTT-------TGGCG-ATTTT-ATAT-TTTCA--TAAAAAA
gi|9 : aaatttcatatctTCTTGAAAAT-----A-TTTTAACACTTTTATT-C----CA-AAAAGCAAGATTTT---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTT---T-GAAAAT-GTTAATTGATCATCTAAA--T-G------------TTGA-A--ATTTAA-----AATACGAG----ACTGGATTTCAT--AGTAG-AATAC-ATGAATGA-TATTTTCTCTTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG
Alignments
lowQualScore : 1 111111 111111 1111 333333 11111 99999999999999999999999999999999 1111 11111 1111 11 2222222 222 11 33333333333 11 22 11 11 222222 1111 2222222222 222222222 1 1 11111 1 3333333333333 1 1 444444444444444444444444444444 222 11 2222222 11 11 11111 11 11 111 11 22222222 22222222 11111 111 111 111 11 111
lowQualScore : 0 888888 5 444444 4 2222 555555 77777 2 0 66 4 777 4 5 33333333333333333333333333333333 3333 22222 7777 6 11 8 8 11 6 6666666 8 6 6 111 8 8 8 0 33 77777777777 1 6 1 6 1 8 8 8 8 3 8 11 1 33 1 33 11 888888 3 6 0 8 8888 3 3333333333 666666666 1 77 4 1 8 3 1 0 1 0 55555 0 5555555555555 0 1 0 3 555555555555555555555555555555 0 222 11 88 5 6666666 99 5 11 3 8 11 6 6 44444 6 6 99 11 8 555 8 3 88 8 33 00000000 1 3 44444444 6 6 66666 6 6 6 6 6 6 6 5 000 5 5 77 5 77 555 5 555 99 1 9 99 2 6 2 6 55 6 5 1 5 5 77 5 5 1 6 6 6 77 5 77 000 1
lowQualScore : . ...... . ...... . .... ...... ..... . . .. . ... . . ................................ .... ..... .... . .. . . .. . ....... . . . ... . . . . .. ........... . . . . . . . . . . . .. . .. . .. .. ...... . . . . .... . .......... ......... . .. . . . . . . . . ..... . ............. . . . . .............................. . ... .. .. . ....... .. . .. . . .. . . ..... . . .. .. . ... . . .. . .. ........ . . ........ . . ..... . . . . . . . . ... . . .. . .. ... . ... .. . . .. . . . . .. . . . . . .. . . . . . . .. . .. ... .
lowQualScore : 0 111111 7 888888 4 0000 000000 99999 6 7 11 4 888 4 0 44444444444444444444444444444444 9999 55555 0000 0 00 0 0 44 7 0000000 0 7 7 555 0 0 0 8 00 00000000000 0 7 0 7 0 0 0 0 0 8 0 00 0 88 2 88 22 888888 2 7 6 0 2222 8 5555555555 777777777 7 44 0 4 7 0 7 8 4 0 00000 0 0000000000000 0 0 0 2 555555555555555555555555555555 2 555 00 88 6 0000000 44 6 00 2 0 00 7 7 33333 7 7 00 00 0 222 0 2 66 0 88 55555555 7 2 22222222 7 7 77777 7 7 7 7 7 7 7 7 000 7 7 99 7 99 777 7 777 22 0 3 22 5 7 5 7 88 7 7 4 7 7 99 7 7 7 7 7 7 77 7 99 000 0
consensus : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
Reference ( family-552 ) : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
gi|1 : TCTT-AAGA----A-A-TTTCAACACTTTTATT-T----AA-AAAAGCAAGACCCCCAATCCCCCAAAAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCGTT---TAAAAAAC-ATT-------------AACTT-GATCCAT------TTGA-ATTATTGAATATTGAAAATGAGAACCACTAG-TTTTATCCTGTAATAATACGATGAATTATTATTTTCTCTTCAATCTCCAGTTTTTTTTTTCTGGCGCATTTTGAAAT-TTTAAG-CAAAACATTCATTTAAGCC-CAAAAATTCGCTTCCTTTCCATCGAGC---ATGAATCACGCCGACCGAT-TTTTATTACTGTTTTTCAA-TTTAAAGCGTTGAA-ATTT-AAATATGAGGCATTGTTTTCTCATGGTACGGCTT--CACCAAATTA------TA-TTTCTCTTTCAATTTCCAGTTTTTGCGCG-GATTTTTTATATT-T-----AGAAAAACA---------CCATTTAAACAGAAAATTCCC--CTTTCCCACCAAGAAAACAAGAGCCGA-TCTATTAATA-TGTAGATTGGAA-ATTTAAAATTTGA--G--ACTGG--TTTTCATT-GTATGT-TACATAAATTATAATTTT----TT--TTC-------TTCAATCTCCATTTTT-GCGGCGGATTTT-TTGTATAAAAAACGAAAAAATTCATTTATACCCC-TAA--TTCACATTTT-CAATCGAGGACAAACAGC-AGGCCGA---TTTTGTTT-ATGC-CTAA--TGCGAT-TA-AAGGTTTGAAATTGAA-A--ATCTTGACA-TTGGCTTTCAATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTTTCTT-C-A-AT-TTCCCAGTTTTGTGCGCGCAATT-TT--TTAT-A--T---AAAAA-AAC--CATCATTAATAA-CCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACAGCGCAGCCG-A-TTTT-ATT-ATGT--TATTTGTATATTATTTTCCTTGCTATGAAAT-AATCAATAAATAAATTTCTGTCTGGCCAA---TTAG-TTGAGGTTAGGCCCAAAA
gi|10 : ttCAGTTTT-GG---ACAG-T-TT--TCAT-G--T---CGCAA-AA---TATCCCT--TAACCCA-AAAG--GTCCCATT-TTCCCATTGAGA-CATA--AAAA---------------------TATTTATATT-TATTTT-CT----------T-AATCAATATTT-TGTTTTTGT-TA--CAA---TTAATTTGAGGTTTGGCACAAAatatggctagattgactaacta
gi|11 : TT-ATAT-TTTAA---AAATACACCATTTAA-CCAC-AAAATTCCCTT--TTCCCAACGAG----AA-----ACAACAGCCTAT-TTCTTATA-TGTTGATA-A-TTTAGAG-GATGAC-ATTTAAAATTTGAGAC-TGGTTT--TCAT
gi|12 : A-A-TTTCAACACTTTTATTAC----AA-AAAAGCAAGATCCC---CCCCCCCAAA-AAAAATACAGTCCATGAAC----GAAATTCTGC--TG-GTT---T-AAAGAC-ATT-------------AA-----------------TTGATC--ATTT-G-----AATAT
gi|13 : ttttcttagA-TATTTTCTCTTCAATCTCCAGTGTT-------TTGTG-ATTTT-ATAT-TTTAATTTTAAAAAATCCTTTAA-CC-C-AAAA---------TTCCCATCGAG----AT-----AAAACAGCCGAT-TTTTATTA-TGTTGATtg
gi|14 : GA--TTT-TTGTATAAAAAACG-------TCATTTT-ATCCCCAAA--TTCACATTTTCCCATTGA-GAC--ACAGC-A-GCTGA---TTTT-TTTCATG--CTAA--T-CGTT-TA-AAGG-TTGAAATTGAA-
gi|15 : GATATTTTCTC----TTCATC-A-TTAAAAG-GTTGAA-ATTTAAAGTAGGTGGC-TGGTTT--TCATTGTA--GATATTTA-AAAATTA------TATTTTCTC-TTCAATTTCCAGT
gi|16 : gaatTTTCTC---CAATTTCCAGTTTTTG-GCG-A--TTTT-ATAT--------A-AAAAATA---------TCATTTGACCCCAAAATTCCC-ATTTT-CCATCGA-GATACAGCATCCGATATTTTTAAT
gi|17 : TTTC-TTCAATTTCCAGTTTTGG-GCG-A--TTACTGTATT-TTAAAAA-AAAAGTA---------TCATTTAACCCCGAAATTGTC-ATTTCTCCATCGA-GATATAGCAGTTGA
gi|18 : TT-T----AACAAAAGCAAGATTTT---GCCTC------AAAATTATAGTTCAGGAAAAAATAAAATTC-CC--TG-GTTTTAT-AAGAATAATT-------------GA--T-C------------AT---A--ATTTAA-----AATA
gi|19 : aaatA-A-TTTCAACACTTTTATT-TTTAAAA-AAAAGCAAGATTT----GCCCTAAAAA-AAAAATACTGTCCAGGAAC----GAAATTCTGC--TG-GTT---T-AAAAA
gi|2 : tttcttggTCTT-AAAATTTCATA-TTTTAATACTTTTATT-C----CA-AAAAGCAAGATTTT---GACCC------CAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTA---T-GAAAAT-ATC-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATAATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AG-----AAAACAGCCGAT-TTTTCTTA-TGTTGATC-A-TTTAAAG-GTTGGA-ATTTGAAATATGAGGC-TGGTTT--TCATTTTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGATGTTG-GCG-A--GTTTCATATTGT-----ATAAAAACA---------CCATTTAACCCCAAAATTCCCAATTTTTCCATCGAGGATACAGCA-CCG-TTTTTTTATTGTTGT-GACATGAA-ATTTAAAATTTGC--GCCACT-G--TTTTCATT-GTAGGT-TAC-TAGATTATA----T----TT--TTC------AACCAAT-TCCAGTTTT---GGCGA--TTT-TTATATAAAAAACA-------TAATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGA-GAT--ACAGCTA-GCCAA---TATT-TTA-ATG--CTAA--T-CACTCCA-TAAG-TTGAAATTTAACA--AT-TCAAGATTTGGTTTTTCATGG--------TAGGGTACAT-AA-ATTATA-----TT-TTC--TT-C-A-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--T---AAAAA-AG---CATCATT--TAACCCCCAAAA--TTCCAATT-TTTCCATCGACA-GATA--GCAGCCG-ATTTTT-ATT-ATGT--TGTGTGTATA-TCTTTT-CTCGC-ATG-AAT-TATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTATGCCCAAAA
gi|20 : TTTTATC-C----CA-AAAAGCAAGATTTT---GCCCC------AACATTACAGTCCAGGAACA---AAAATTGTTCTATA-GTT---T-GAAAAT-ATC-------------AA-----------------TTGATC--ATTTAA-----
gi|21 : GTTTTTCATTG--------TAGGTTACAG-AG-ATTGTA-----TT-TTCT-CT-CCA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--TA--AAAAA-AA---CATTATg
gi|23 : actTTTCTGT-TC--CAA---TTAGTTTGAGGTTAGGCCGAAA
gi|25 : -ATTTTT-ATT-ATGT--TGTTTGTATA-TGTTTT-CTTGC-ATG-AAT-GAcaaatggctacatatatattgaccagat
gi|26 : A-A-TTTCAACACTTTTATT-A----AA-AAAAGCcta
gi|28 : ggtttttcgtag-CATTTCTGT-TG--CAA---TTACTTTGATGTTTGGCCA
gi|3 : TCCCC-TTTTCCCCACCAAGAA-ACAAGAGCCAATCTTT--AATA-TGT-AAATTGAA-ATTTAAAATTTGACGG--ACT-GAGTTCTCATTCGTATGTCTACATAAATTAGA----T----TTATTTCGTCTCAAATCTA---CCAATTTTAG-GGCGA--TTTGTTGTA-AAAAAACG-------TCATTTT-ACCTCAAAGAGGTCACATTTTCCCATGGA-GAC--ACAGC-A-GCCGGATGTTTT-TTT-ATG--CTAA--T-CGTGTTAGAAGG-GTGAAATTGAG-A--AT-TTGA-A-TTGGTTTT-CATTG--------TAGGGTACAC-GACATTATA-----TT-TTTT-TTTC-A-ACATT-TCATGTTT-TG---GCGA-CATTACTTAT-AATT---AAAAG-CC---CATCATT--TAACCCC--AAA--TTCC-ATT----CCATCGA---TACA--GCAG-CG-ATTTTT-ATTAATGC--TGTTTGTATA-GATTTT-TCTGC-ATG-AATAAATCAATAAAT-AATATATGT-TG--CAAATTTTAGTTTGAGGTTAGGCCAAAAA
gi|4 : TCTT-AAACTTTCA-AATTTTAACACTTTTAGT-A----AA-AAAAGCATGATTTC---CCCCA------AAAATTACAGCCCAGGA--------------TC--TG-GTT---T-AAAAAC-ATTAATTGACAATTCAAA--T-G------------TTGA-A--ATTTAA-----AATATGGA----ATTGGTTTTCAT--TGTAG-AAAAC-ATGAA-------GTTCTCTTCAATCTCCAGTTTT-------TGGCG-AATTT-AAATATCTA----AAAAACATCATTTAA-CC-C-CAAATTCCCTT-CTTCCCATCAAGATGTAT-----ACATCAGCCGAT-TTTTATTA-TGTTCATC-ATTTTTAAG-GTTGAATATTCAAAATATGAAGG-TTGTTT--TCATAGTAG-GTTA--CA-TAAATTATACATGTATTTTCTC-TTCAATTTCCAGTTTGGG-GCGTT--TTTTTATATT-T-----A-AAAAACAAACAAATCGCCATTTAACCCC-AAATTCCC-ATTTTCCAAACAAGAA-ACAATAACTGATTTTTaatctagattgactaact
gi|5 : aatt-A-GCC-A---TTTT-TTT-TTGGCCTAACCT-CAAACTA-AA----TGCAACAGAA-AGGAT-T---TA-TTGATTATTCAT-GCAAGAAAATAGGGTACATGAA-AATGTAATTCTTT-TTCT-TT-C-AGAT-TT-CAAGTCTT-TG---GGGA-T-TT--TTATAA--T---AAAAACAAACCCATCATT--TAACCTCTAAAA--CTTCCATTATTCCCATCGAGATTACAC-ACAGCCGAATTTTTGAAT-ATGTTGTGTTTGTATA-TATTCT-Caat
gi|6 : caatctTTCATTA--------TAGGTTACAT-AA-ATTATA-----TTGTTTT-TT-C-A-AT-TT-CCAATTTT-GG---GCGA-T-TT--TTAT-A--TTTTAAAAA-AA---CGCCATT--AAATAACCAAAACATTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTACCTGT-TG--CAT---TTAGTTTGAGGTTAGGC
gi|7 : ga-T-----A-AAAAACA---------TCATTTAACCCCAAAATCCCC-ATTTTTTCATCGA-GATACAGCAGCCGTTTTTTTTATTG-TG-----TTGAGCATTTAAAATTTGC---------G--TTTTCATT-GTAGGT-TGCAAAGATTATA----TTTTCTT--TCC------AAT---T-TCCAGTTTG-G-GGCGA--TT--------------------------TTTA-AGCCCAAAA--TTCACATTTTCCTATAGA-GAT--ACGGC-A-GCCG----TTTT-TTT-
gi|8 : ---GCCCC------AAAATTACAGTCCAGGAA-A---AAAATTGTTC--TT-GTT---T-AAAAAT-ATT-------------AA--TTGATCATTTAAATTTTGA-A--ATTTAA-----AATATGCG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCGGTTTT-------TGGCG-ATTTT-ATAT-TTTCA--TAAAAAA
gi|9 : aaatttcatatctTCTTGAAAAT-----A-TTTTAACACTTTTATT-C----CA-AAAAGCAAGATTTT---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTGTTC--TG-GTT---T-GAAAAT-GTTAATTGATCATCTAAA--T-G------------TTGA-A--ATTTAA-----AATACGAG----ACTGGATTTCAT--AGTAG-AATAC-ATGAATGA-TATTTTCTCTTCA
blockSeqs : G TTTCAT A TTTAA C C CCAAA AAAAT C TA . TTA . A AATTGACAATTCAAATG TC . . A . . . TT . . . . A TTT . A . C ATGTAT A A T . G . T . T A . . T G A TT A TACATG T . . TT T TTTAAAAA AACAAATCG A AA T G T T A A T TGAC C ACGGACTGAG C G C A TTTATTTCGTCTCAAATCTA AG . TG T . T C AG T . . T . GGATG . C GC CC . CTC G G T C GG TCAAGAT T G CAAGAAAA G C ATTCT G . T C G A . . . . A AC A AT TTT C ACC . C C CA C A G T C C A T G A TG . . C . . A T . . ATT C
blockSeqs : . TTTCA . AC . T AAAAA CA C . . . . . AATTGATCATTTAAATT TC . . T . . . TT . . . . . T . . . C AA A . A . G . . . . A . . T . T . T . T . . A C TGTAT . G A T G T G A T . TAAA . CGCCACTG . T . A TTTTCTTTCCAATT G . T T . A A . C . . . . GA . . . . . TGT . A T . . TTGAA T T . . . . . . . . . . . . . . . . . . A . . . C T . A . C . . C . T . . . . . T . . . C . . . C
blockSeqs : . T . T . T . CA C . . . . . AATTGATCATCTAAATG A . . A . . . TG . . . . . T . . . . AT A . C . C . . . . G . . A . T . T . T . . A T TTA . A A C G T G A A . . . CG . G . . TTTTTCAACCAAT . . T . . T A . G . . . . AA . . . . . AAC . G G . . TTA T T . . . . . . . . . . . . . . . . . . . . . . C C . C . G . . C . T . . . . . T . . . C . . . G
blockSeqs : . C . T . CA G . . . . . GATC A . . A . . . . . . . . . . . . . . AG T . C . G . . . . A . . . . A . A . A T C . T A A T . . . . A A . A . . . . A . . . . . TT . . . . T T . . . . . . . . . . . . . . . . . . . . . . C . . C . G . . . . T . . . . . T . . . A . . . A
blockSeqs : . C . C . C G . . . . . AATG A . . . . . . A . C . . . A T . . G T . . G . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . T . . . . . . . . . C . . . A
blockSeqs : . A . T . C G . . . . . AA A . A . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . A G . . . . . AA A .
blockSeqs : C . . . . . . . .
blockSeqCons : T*** ****** CA*** AATGAT************************** A*** ***** **** ** ******* T** ** AN********* ** A*** TTA******* A* ** ******* N* ** GA*** ** CGC T* *** *** ** ** C* **
originalCons : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTC---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATT-------------AA--T-G------------TTGA-A--ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-C-AAAATTCCCTT-CTTCCCATCGAG----AT-----ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCC-ATTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGNTCTA-AAGG-TTGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
finalCons : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTTT---GCCCC------AAAATTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---T-AAAAAT-ATTAATGAT--------------------------TTGAA---ATTTAA-----AATATGAG----ACTGGATTTCAT--TGTAG-AATAC-ATGAATTA-TATTTTCTCTTCAATCTCCAGTTTT-------TGGCG-ATTTT-ATAT-TTTAAT--AAAAAAATCATTTAA-CC-C-AAAATTCCCTT--TTCCCATCGAGAN---------ACAACAGCCGAT-TTTTNTTA-TGTTNATC-A-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC-TGGTTT--TCATNGTA--GTTA--CA-TAAATTA------TATTTTCTC-TTCAATTTCCAGTTTTTG-GCGA---TTTTTATATTTA-------AAAAACA---------CCATTTAACCCCAAAATTCCCA-TTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATG-TGT-GANTTGAA-ATTTAAAATTTGN--G--ACT-G--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTN-ACCCCAAAA--TTCACATTTTCCCATCGA-GAC--ACAGC-A-GCCGA---TTTT-TTT-ATG--CTAA--T-CGCGCTA-AAGGT-TGAAATTGAA-A--AT-TCGANA-TTGGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAATC-ATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG
Alignments
lowQualScore : 1 111111 111111 22222 11111 11111 99999999999999999999 11 11111 1111 11 2222222 222 22 33333 1 11 22 11 11 222222 1111 2222222222 222222222 1 1 11111 1 333333333333 1 1 444444444444444444444444444444 1 1 11 2222222 111 11 11111 11 222 11 111111 1 22222222 11111 111 111 111 11 111
lowQualScore : 0 888888 5 444444 4 9999 22222 11111 44444 2 0 66 4 777 666 44444444444444444444 0 11 66666 7777 6 11 8 8 11 6 6666666 8 6 6 111 8 8 88 77 77777 99 1 6 1 6 1 6 8 8 3 11 8 1 33 1 33 11 888888 6 0 8 8888 3 3333333333 666666666 1 77 4 1 8 3 1 0 66 1 0 55555 0 555555555555 0 1 0 3 555555555555555555555555555555 0 0 0 2 11 88 5 6666666 99 1 444 3 3 8 11 6 6 44444 6 6 11 8 777 8 3 0 8 8 33 999999 0 1 3 44444444 6 6 66666 6 6 6 6 6 6 6 5 000 5 5 77 5 77 555 5 555 99 1 9 99 2 6 2 6 55 6 5 1 5 5 77 5 5 1 6 6 6 77 5 77 000 1
lowQualScore : . ...... . ...... . .... ..... ..... ..... . . .. . ... ... .................... . .. ..... .... . .. . . .. . ....... . . . ... . . .. .. ..... .. . . . . . . . . . .. . . .. . .. .. ...... . . . .... . .......... ......... . .. . . . . . . .. . . ..... . ............ . . . . .............................. . . . . .. .. . ....... .. . ... . . . .. . . ..... . . .. . ... . . . . . .. ...... . . . ........ . . ..... . . . . . . . . ... . . .. . .. ... . ... .. . . .. . . . . .. . . . . . .. . . . . . . .. . .. ... .
lowQualScore : 0 111111 7 888888 4 4444 22222 11111 11111 6 7 11 4 888 111 00000000000000000000 1 99 77777 0000 0 00 0 0 44 7 0000000 0 7 7 555 0 0 88 00 00000 00 0 7 0 7 0 0 0 0 8 00 0 0 88 2 88 22 888888 7 6 0 2222 8 5555555555 777777777 7 44 0 4 7 0 7 3 44 4 0 00000 0 000000000000 0 0 0 2 555555555555555555555555555555 2 0 0 5 00 88 6 0000000 00 0 888 2 2 0 00 7 7 33333 7 7 00 0 222 0 2 6 0 0 88 555555 0 7 2 22222222 7 7 77777 7 7 7 7 7 7 7 7 000 7 7 99 7 99 777 7 777 22 0 3 22 5 7 5 7 88 7 7 4 7 7 99 7 7 7 7 7 7 77 7 99 000 0
consensus : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTT----TGCCCC-----AAAA-----TTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---TAAAAA-T-ATTAAT-T-G---ATCA-T-AAAT-TTGAA--ATTTAAAAT-----ATGAGA----CTGGATTTCAT--TGTAG-AATAC-ATGAATTAT-ATTTTCTCTTCAATCTCCAGTTTTT-------GGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-CAAAA-TTCCCTTC-TTCCCATCGAG-----AT-ACAACAGCCGAT-TTTTNTTA-TGTTNATCA-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC--TGGTTT-TCATNGTA--GTTA--CAT-AAATTA------TATTTTCTCTT-CAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCCA-TTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATGT-GT-GANTTGAA-ATTTAAAATTTGN--G--ACTGG-TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTA-ACCCCAAAA--TTCACATTTTCCCATCGAG-ACA--CAGC-AG-CCGA---TTTT-TTT-ATG--C-TAATCGCGA-TTA-AAGGTT-GAAATTGAA-A--AT-TCGANATT-GGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
Reference ( family-552 ) : TCTT-AAAATTTCA-A-TTTCAACACTTTTATT-C----AA-AAAAGCAAGATTT----TGCCCC-----AAAA-----TTACAGTCCAGGAACA---AAAATTNTTC--TG-GTT---TAAAAA-T-ATTAA--T-G---AT----------TTGAA--ATTTAAAAT-----ATGAGA----CTGGATTTCAT--TGTAG-AATAC-ATGAATTAT-ATTTTCTCTTCAATCTCCAGTTTTT-------GGCG-ATTTT-ATAT-TTTAA--TAAAAAAATCATTTAA-CC-CAAAA-TTCCCTT--TTCCCATCGAG-----AN-ACAACAGCCGAT-TTTTNTTA-TGTTNATCA-TTTAAAG-GTTGAA-ATTTAAAATATGAGGC--TGGTTT-TCATNGTA--GTTA--CAT-AAATTA------TATTTTCTCTT-CAATTTCCAGTTTTTG-GCG-A--TTTTTATATT-T-----A-AAAAACA---------CCATTTAACCCCAAAATTCCCA-TTTTCCCATCGAGGATACAGCAGCCGATTTTTTTAATGT-GT-GANTTGAA-ATTTAAAATTTGN--G--ACTG--TTTTCATT-GTANGT-TACATAGATTATA----T----TT--TTC------AATCAAT-TCCAGTTTT-G-GGCGA--TTT-TTGTATAAAAAACG-------TCATTTN-ACCCCAAAA--TTCACATTTTCCCATCGAG-ACA--CAGC-AG-CCGA---TTTT-TTT-ATG--C-TAATCGCG--CTA-AAGGTT-GAAATTGAA-A--AT-TCGANATT-GGTTTTTCATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-TT-C-A-AT-TT-CCAGTTTT-TG---GCGA-T-TT--TTAT-A--T---AAAAA-AA---CATCATT--TAACCCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTAGGCCNAAAA
gi|1 : TCTT-AAGA----A-A-TTTCAACACTTTTATT-T----AA-AAAAGCAAGACCCCCAATCCCCC-----AAAAAAAAATTACAACCCAGGAACAC--AAAATTCTGC--TGCGTT---TAAAAAAC-ATTAACTT-G---ATCCAT------TTGAATTATTGAATATTGAAAATGAGAACCACTAG-TTTTATCCTGTAATAATACGATGAATTATTATTTTCTCTTCAATCTCCAGTTTTTTTTTTCTGGCGCATTTTGAAAT-TTTAAG-CAAAACATTCATTTAAGCC-CAAAAATTCGCTTCCTTTCCATCGAGCATGAATCACGCCGACCGAT-TTTTATTACTGTTTTTCAATTTAAAGCGTTGAA-ATTTAAA-TATGAGGCATTGTTTTCTCATGGTACGGCTT--CACCAAATTA------TATTT-CTCTTTCAATTTCCAGTTTTTGCGCG-GATTTTTTATATT-T-----AGAAAAACA---------CCATTTAAACAGAAAATTCCC--CTTTCCCACCAAGAAAACAAGAGCCGATCTATT-AATAT-GTAGATTGGAA-ATTTAAAATTTGA--G--ACTGG-TTTTCATT-GTATGT-TACATAAATTATAATTTT----TT--TTC------T-TCAATCTCCATTTTT-GCGGCGGATTTT-TTGTATAAAAAACGAAAAAATTCATTTATACCCCTAA---TTCACATTTTCA-ATCGAGGACAAACAGC-AGGCCGA---TTTTGTTT-ATG--CCTAAT-GCGA-TTA-AAGGTTTGAAATTGAA-A--ATCTTGACATT-GGCTTTCAATTG--------TAGGGTACAT-AA-ATTATA-----TT-TTTTCTT-C-A-AT-TTCCCAGTTTTGTGCGCGCAATT-TT--TTAT-A--T---AAAAA-AAC--CATCATTAATAA-CCCCAAAA--TTCCCATT-TTCCCATCGAGA-TACAGCGCAGCCG-A-TTTT-ATT-ATGT--TATTTGTATATTATTTTCCTTGCTATGAAAT-AATCAATAAATAAATTTCTGTCTGGCCAA---TTAG-TTGAGGTTAGGCCCAAAA
gi|10 : ttCAGTTTT-GG---ACAG-T-TT--TCAT-G--T---CGCAA-AA---TATCCCT--TAACCCA-AAAG--GTCCCATT-TTCCCATTGAGA-CATA--AAAA---------------------TATTTATATT-TATTTT-CT----------T-AATCAATATTT-TGTTTTTGT-TA--CAA---TTAATTTGAGGTTTGGCACAAAatatggctagattgactaacta
gi|11 : TT-ATAT-TTTAA---AAATACACCATTTAA-CCACAAAA-TTCCCTT--TTCCCAACGAG-----AA-ACAACAGCCTAT-TTCTTATA-TGTTGATAA-TTTAGAG-GATGAC-ATTTAAAATTTGAGAC--TGGTTT-TCAT
gi|12 : A-A-TTTCAACACTTTTATTAC----AA-AAAAGCAAGATCC----CCCCCCCCAAAAAAA-----ATACAGTCCATGAACG---AAA-TTCTGC--TG-GTT---TAAAGA-C-ATTAAT-T-GATCAT----------TTGAAT-ATT
gi|13 : ttttcttagAT-ATTTTCTCTTCAATCTCCAGTGTTT-------TGTG-ATTTT-ATAT-TTTAATTTTAAAAAATCCTTTAA-CC-CAAAA----------TTCCCATCGAG-----AT-AAAACAGCCGAT-TTTTATTA-TGTTGATg
gi|14 : GA--TTT-TTGTATAAAAAACG-------TCATTTT-ATCCCCAAA--TTCACATTTTCCCATTGAG-ACA--CAGC-AG-CTGA---TTTT-TTTCATG--C-TAATCGT---TTA-AAGGTT-GAAATTGAA-
gi|15 : GATATTTTCTC----TTCATCA-TTAAAAG-GTTGAA-ATTTAAAGTAGGTGGC--TGGTTT-TCATTGTA--GATATTTAA-AAATTA------TATTTTCTCTT-CAATTTCCAGT
gi|16 : gaatTTTCTC---CAATTTCCAGTTTTTG-GCG-A--TTTT-ATAT--------A-AAAAATA---------TCATTTGACCCCAAAATTCCCA-TTTT-CCATCGA-GATACAGCATCCGATATTTTTAAT
gi|17 : TTTCTT-CAATTTCCAGTTTTGG-GCG-A--TTACTGTATT-TTAAAAA-AAAAGTA---------TCATTTAACCCCGAAATTGTCA-TTTCTCCATCGA-GATATAGCAGTTGA
gi|18 : TT-T----AACAAAAGCAAGATTT----TGCCTC-----AAAA-----TTATAGTTCAGGAAAAAATAAAATTC-CC--TG-GTTTTATAAGAA-TAATTGA--T-C---AT--------------A--ATTTAAAAT-----A
gi|19 : aaatA-A-TTTCAACACTTTTATT-TTTAAAA-AAAAGCAAGA-TT----TGCCCTAAAAAAAAA-----ATACTGTCCAGGAAC----GAAATTCTGC--TG-GTT---TAAAAA-
gi|2 : tttcttggTCTT-AAAATTTCATA-TTTTAATACTTTTATT-C----CA-AAAAGCAAGATTT----TGACCC-----CAAA-----TTACAGTCCAGGAACA---AAAATTGTTC--TG-GTA---TGAAAA-T-ATCAA--T-G---------------TTGAA--ATTTAAAAT-----ATGAGA----CTGGATTTCAT--TGTAG-AATAC-ATGAATTAT-ATTTTCTCTTCAATCTCCAGTTTTT-------GGCG-ATTTT-ATAT-TTTAA--TAAAAAAATAATTTAA-CC-CAAAA-TTCCCTTC-TTCCCATCGAG-----AG-AAAACAGCCGAT-TTTTCTTA-TGTTGATCA-TTTAAAG-GTTGGA-ATTTGAAATATGAGGC--TGGTTT-TCATTTTA--GTTA--CAT-AAATTA------TATTTTCTCTT-CAATTTCCAGATGTTG-GCG-A--GTTTCATATTGT-----ATAAAAACA---------CCATTTAACCCCAAAATTCCCAATTTTTCCATCGAGGATACAGCA-CCG-TTTTTTTATTGTTGT-GACATGAA-ATTTAAAATTTGC--GCCACTG--TTTTCATT-GTAGGT-TAC-TAGATTATA----T----TT--TTC------AACCAAT-TCCAGTTTT-G-G-CGA--TTT-TTATATAAAAAACA-------TAATTTA-ACCCCAAAA--TTCCCATTTTCCCATCGAG-ATA--CAGCTAG-CCAA---TATT-TTA-ATG--C-TAATCACT--CCA-TAAGTT-GAAATTTAACA--AT-TCAAGATTTGGTTTTTCATGG--------TAGGGTACAT-AA-ATTATA-----TT-TTCT-T--C-A-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--T---AAAAA-AG---CATCATT--TAACCCCCAAAA--TTCCAATT-TTTCCATCGACA-GATA--GCAGCCG-ATTTTT-ATT-ATGT--TGTGTGTATA-TCTTTT-CTCGC-ATG-AAT-TATCAATAAAT-CATTTCTGT-TG--CAA---TTAGTTTGAGGTTATGCCCAAAA
gi|20 : TTTTATC-C----CA-AAAAGCAAGATTT----TGCCCC-----AACA-----TTACAGTCCAGGAACA---AAAATTGTTCTATA-GTT---TGAAAA-T-ATCAAT-T-G---AT----------C------ATTTAA
gi|21 : GTTTTTCATTG--------TAGGTTACAG-AG-ATTGTA-----TT-TTCT-CT-CCA-AT-TT-CCAGTTTT-TG---ACGA-T-TT--TTAT-A--TA--AAAAA-AA---CATTATg
gi|23 : actTTTCTGT-TC--CAA---TTAGTTTGAGGTTAGGCCGAAA
gi|25 : -ATTTTT-ATT-ATGT--TGTTTGTATA-TGTTTT-CTTGC-ATG-AAT-GAcaaatggctacatatatattgaccagat
gi|26 : A-A-TTTCAACACTTTTATT-A----AA-AAAAGCcta
gi|28 : ggtttttcgtag-CATTTCTGT-TG--CAA---TTACTTTGATGTTTGGCCA
gi|3 : TCCCCT-TTTCCCCACCAAGAA-ACAAGAGCCAATCTTT--AATAT-GT-AAATTGAA-ATTTAAAATTTGACGG--ACTGAGTTCTCATTCGTATGTCTACATAAATTAGA----T----TTATTTCGTCTCAAATCTA---CCAATTTTAG-GGCGA--TTTGTTGTA-AAAAAACG-------TCATTTT-ACCTCAAAGAGGTCACATTTTCCCATGGAG-ACA--CAGC-AG-CCGGATGTTTT-TTT-ATG--C-TAATCGTG--TTAGAAGGGT-GAAATTGAG-A--AT-TTGA-ATT-GGTTTT-CATTG--------TAGGGTACAC-GACATTATA-----TT-TTTT-TTTC-A-ACATT-TCATGTTT-TG---GCGA-CATTACTTAT-AATT---AAAAG-CC---CATCATT--TAACCCC--AAA--TTCC-ATT----CCATCGA---TACA--GCAG-CG-ATTTTT-ATTAATGC--TGTTTGTATA-GATTTT-TCTGC-ATG-AATAAATCAATAAAT-AATATATGT-TG--CAAATTTTAGTTTGAGGTTAGGCCAAAAA
gi|4 : TCTT-AAACTTTCA-AATTTTAACACTTTTAGT-A----AA-AAAAGCATGATTT----CCCCCA-----AAAA-----TTACAGCCCAGGA--------------TC--TG-GTT---TAAAAA-C-ATTAA--TTG---ACAATTCAAATGTTGAA--ATTTAAAAT-----ATGGAA----TTGGTTTTCAT--TGTAG-AAAAC-ATGAA-------GTTCTCTTCAATCTCCAGTTTTT-------GGCG-AATTT-AAATATCTA----AAAAACATCATTTAA-CC-CCAAA-TTCCCTTC-TTCCCATCAAGATGT-AT-ACATCAGCCGAT-TTTTATTA-TGTTCATCATTTTTAAG-GTTGAATATTCAAAATATGAAGG--TTGTTT-TCATAGTAG-GTTA--CAT-AAATTATACATGTATTTTCTCTT-CAATTTCCAGTTTGGG-GCGTT--TTTTTATATT-T-----A-AAAAACAAACAAATCGCCATTTAACCCC-AAATTCCCA-TTTTCCAAACAAGAA-ACAATAACTGATTTTTaatctagattgactaact
gi|5 : aatt-AG-CC-A---TTTT-TTT-TTGGCC-TAACCTCAAACTA-AA---T-GCAACAGAA-AGGAT-T---TATT-GATTATTCAT-GCAAGAAAATAGGGTACATGAA-AATGTAATTCTTT-TTCT-TT-C-AGAT-TT-CAAGTCTT-TG---GGGA-T-TT--TTATAA--T---AAAAACAAACCCATCATT--TAACCTCTAAAA--CTTCCATTATTCCCATCGAGATTACAC-ACAGCCGAATTTTTGAAT-ATGTTGTGTTTGTATA-TATTCT-Caat
gi|6 : caatctTTCATTA--------TAGGTTACAT-AA-ATTATA-----TTGTTTT-TT-C-A-AT-TT-CCAATTTT-GG---GCGA-T-TT--TTAT-A--TTTTAAAAA-AA---CGCCATT--AAATAACCAAAACATTCCCATT-TTCCCATCGAGA-TACA--GCAGCCG-ATTTTT-ATT-ATGT--TGTTTGTATA-TATTTT-CTTGC-ATG-AAT-AATCAATAAAT-CCTACCTGT-TG--CAT---TTAGTTTGAGGTTAGGC
gi|7 : ga-T-----A-AAAAACA---------TCATTTAACCCCAAAATCCCCA-TTTTTTCATCGA-GATACAGCAGCCGTTTTTTTTATTGT-G-----TTGAGCATTTAAAATTTGC--------G--TTTTCATT-GTAGGT-TGCAAAGATTATA----TTTTCTT--TCC------AAT---T-TCCAGTTTG-G-GGCGA--TT--------------------------TTTA-AGCCCAAAA--TTCACATTTTCCTATAGAG-ATA--CGGC-AG-CCG----TTTT-TTT-
gi|8 : TC----TGCCCC-----AAAA-----TTACAGTCCAGGAA-A---AAAATTGTTC--TT-GTT---TAAAAA-T-ATTAA--TTG---ATCATTTAAATTTTGAA--ATTTAAAAT-----ATGCGA----CTGGATTTCAT--TGTAG-AATAC-ATGAATTAT-ATTTTCTCTTCAATCTCCGGTTTTT-------GGCG-ATTTT-ATAT-TTTCA--TAAAAAA
gi|9 : aaatttcataTCTTGAAAAT-----A-TTTTAACACTTTTATT-C----CA-AAAAGCAAGATTT----TGCCCC-----AAAA-----TTACAGTCCAGGAACA---AAAATTGTTC--TG-GTT---TGAAAA-T-GTTAAT-T-G---ATCATCTAAATGTTGAA--ATTTAAAAT-----ACGAGA----CTGGATTTCAT--AGTAG-AATAC-ATGAATGAT-ATTTTCTCTTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATGCAAGGAAATGTACTATATATGTAATTTCTTTACTTTCAGATCCCAAACCGGTGGACGATTTTGGTAATA
Unaligned ( gi|24 ): CAGTTTCTGGCCATATTTACAATCATATCAATAGACAAGAGGCCCACAGGCCTTAAC
Unaligned ( gi|27 ): TAATGATATAGACAAGAGGCCCACAGGCCTTAACG