lowQualScore : 11111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 4 1 7777777777777777777 1 4444 5555555 1 99999999999999999999 1 1 22222222222 22222 1 1 88888888888888888888888888 33333 66666666666666666666666666666666666666666 3333333333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222222 1111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333 111 3 1 00000000000000000000000000000 1 44 1 222222222 1 66666666 1 11 1 1 111111111111111111111111111111111111111111111111111111111111111111111111 2 1 22222 11 1 33333333333 1111111 2222222 11 1 222222 7777777777 2 2 44 1 11 1 66666666666666 1
lowQualScore : 555 0 5 4 5555555555555555555 2 7 3 7777 0000000 0 8 3 88888888888888888888 3 3 3 99999999999 66666 7 3 66666666666666666666666666 55555 99999999999999999999999999999999999999999 3333333333 6 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 5555555555555555 5 77 3 2222 000 77 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8888 77 444444 66 333 66 66 5 5 5 2 3 66 66666666666666666666666666666 2 22 1 6 2 5 111111111 5 7 11111111 9 55 5 0 99 6 999999999999999999999999999999999999999999999999999999999999999999999999 8 5 6 0 8 8 11111 11 8 0 22222222222 9999999 3333333 00 3 333333 7 1111111111 0 3 2 0 22 4 5 88 5 99999999999999 5 4 4
lowQualScore : ... . . . ................... . . . .... ....... . . . .................... . . . ........... ..... . . .......................... ..... ......................................... .......... . . ......................................................................................... .. ................ . .. . .... ... .. .......................................................................................................... .... .. ...... .. ... .. .. . . . . . .. ............................. . .. . . . . ......... . . ........ . .. . . .. . ........................................................................ . . . . . . ..... .. . . ........... ....... ....... .. . ...... . .......... . . . . .. . . .. . .............. . . .
lowQualScore : 000 0 0 0 5555555555555555555 5 3 3 0000 0000000 7 3 3 00000000000000000000 3 7 3 77777777777 33333 0 3 33333333333333333333333333 77777 33333333333333333333333333333333333333333 8888888888 7 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 8888888888888888 0 99 7 1111 000 99 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4444 99 555555 99 888 99 99 8 0 5 5 2 99 00000000000000000000000000000 7 88 7 7 7 7 666666666 7 1 88888888 8 00 0 8 22 7 999999999999999999999999999999999999999999999999999999999999999999999999 0 6 0 8 0 0 00000 00 0 0 00000000000 0000000 5555555 22 3 777777 3 0000000000 0 0 5 0 55 0 5 00 0 55555555555555 5 0 0
consensus : CAAACGTTGGTAAA-TCAAAAANATAGTANATCCANNANAANCTTAGTGGACCGAAATTGAGA-AATCGCCTGG-CTGTG-T---A-GATATGAATA-GCA--TA-----A-GA--AA---TGGT-AACGG-AAAGAAAG-TC-ACAGGGAAAAAN--T-CACGAGAAAAAAG-CCTC----ATG--TATATCAT--------GAAAAAAGTCGTAGGA-AAAAGTCACAAG-----AAAAAATTCCGTGANATTGTTAGAACTAGCAANNAGAACATTA-------TTTTATTT-TCCAA-TCAAGGG------C-----CCTC-AG--GG-----GCAACA--T-GAGAATAACA--------CAT----------------ACA------AGT--G--TATACAT-------AT-------ATCAG-CAAA--GAAAAG----AGAAGTG---ATTA--CA--------TAGCACAGAGTTAC---A-------ACT--ACA-GA---T---TT--------CG------CGT--------GTA-C---------------GT----A-AT-TGTT--AAAAAT--NAANTT--CCCA---ATTA--G--AT-TTAAAATTGATGG-CTCTTTCAGAACAC--AGCA----ATATATATNTTAT--AAT---T--GTTCATCATTCAATGCAATAAAA--TTCTGC-ACATTTTTT-T--C--CT--AT-G-CATCAAGT----A-AAGGTTT-TCTTTCCGCAAT-AAAATTTTCACATTT--GAGCAAAAAATGAATTT--AT-CTCTT-AA--GTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT-A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA-------TGCGTAATT----T--ACAA-ANAT-AGAATCTAT-ATATTTCA-T-T-ATAACAGTTCTAAGTCAATATGAAGTNCGNACCTGACC-TTAGGGNAGAAAAGGTCACCAAGAGTATGTATTTTTTTTTTTTTACATTATNTCATGANTTGG
Reference ( gi|1 ) : CAAA---TGGTAAAATCCAAAATA----AT-TTCATTAT--TTTTAGTGGACCGAAATTGAGA-AATTGCCTAA-CTGTG-T---G-GACAAGAATA-GCA--T------G-GA--AA---TGGT-AACGG-AAAGAAAGTTC-ACAGGGGAAAAG--T-CACGAGAATAAAG-CCT-----AT---TATATCA---------GAAAAAAGTCGTAGG--AAAAGTCACAAG-----GAATTTTTCC---AAA--GT----A----TAAACATAACATTA-------TTTTATTT-TCCAA-TCAAGGG------C-----C----AG--GG-----G-AACA--TTGAGAATAACA--------CA-----------------ACA------AG---G--TATACAT-------AT-------ATCAG-CAAA--GAAGAG----AGAAGTG---ATTA--CAT-------TAGCA---AGTTAC---A-------ACTTAACA-GA---T---TT--------TG------TGT--------GTA-C---------------GT----A-AT-TGTT--AAAAAT--TAAATT--CCCA---ATTA--G--ATCTTAAAATTGATGG-CTCTTTCAGAACAC--AGCACT-AATATATATGTTATAGAAT--AT--GTTCATCATTCAAAGCAATAAAAATTTCTGC-ACATTTATT-T--C--TT--AT-G-CATCAAGT---TACAAGGTTTATCTTTCCACAAA-AAAATGTTCACAGTT--GAGCAAAAAATTAATTTAAAT-CTCTT-AA--GTGAA-CAA-------------G---------------CAAA-TA-CAT--TCATTCCT-ATGTAA-TGTTAGA-ATAT-CTACCAACTCTA-ATCATTA--AT-TTCTGAGCA-AAA-------TGCGTAATT----T--ACAG-AAAT-AGAATCTAT-ATATTTCAAT-T-ATAATAGTTCTAAGT-AATATGAA-TTTGGACC-AACCTTTAGGGAAGAAAAGGTCACCAAGA-TATGTA--TTTTTTTTTTTACATTATTTTATGAATTGG
gi|7 : CAAACGTTGGTAAA-TCAAAAAAA----AAATTCATAAT--GCTTAGTGGACCAAAAT--AGA-AATCGCC--G-CTGTG-TTTGA-AATATGAATATCCA--TA-----A-GA--AAGATTAGT-AAATG-GAAGAAAG-TC-ACA-GGAAAAAA--T-CACGAGAAAAAAGTCCC-----ATATATATATGA---------AAAAAACGTCGTAGGAAAAAAGTCACAAGAAAAAAAA---TTCC---AGATTGTTAGAA----CAAAGA-AACA-TA-------TTTGATTT-TCCAATTCAAGGGGCCCCAT-----C----AG--GGCGCAAG-AA-A--TGAAGAAT-ACA--------CGAT---------------ACA------AGT--G--TATACAT-------ATTACAATCATCAG-C
gi|2 : ttcacttttcatatatggggagacgtcatatacatgtacatct---TGGTAAA-TCAAAAATATAGTAT-TCTAATAAAATCTTAGTGGACAGAAAATGAGATAATTTCCTGGCCTGTGTT---T-GACATGAATA-GCAGCTACTATAG-GAGTAG---TGGT-AATGGAAAAGAAAGGTCTATAAGGAAACAGAAT-CACGAGAAAAAAG-TCTC----AT---TATATCATTTATGAAGGGAAAAAGTCTT--------AATCACAAG-----AAAAAATTCCGTGATA--GT----ACTAGTAACTAGAACAAGAGAGACAGTGTTATTTCTCCAA-TC-AGTG------CTCTCGC----AGTACG-----G-AGCAAGATGAGAATAGAAGATTGGGGCAT----------------ACA------AGTCCGATTACACATTCTATTAAT-------ATCAGACAAA--GAAAAG----AG-AGTGTATATTA--CA--------TAGCACAGAGTTGCAATA-------ACT--ACA-AACTGT---TT--------TGGGC---TGTAACGGTTGGTA-CAAATGTACTGATATGAT----A-ATATGTTACAAAAATAAGAAATT--TCCAATCATTA--GTAAT-TCAAAATTGATGC-CTC-TTCAGAAC-C--AGC-----ATAT---TATTAT--AATTCAT--CTTCATCGTTCAATGCAATAAAA--TCCT-C-ACATTTTTTGT--T--CT--AT-G-GATCA
gi|10 : ttcaaatttggcattatggagcattttacagatgtcgcacctctgagatatAAATTGAGA-AATTGCCTG--CTGTG-T---ATGGTAAGAATA-GCA--T------AAGA--AAC--TGGTGAACGG-AAAGAAAGTT--ACAG---AAAAT--TTCACGAGAAAAAAG-CCTCATACATG--TATATCATAG------GAAAAAAGTCGTAGGA-AAAAGTCACAGG-----AAA
gi|8 : aAACAT-A-------TTTTATTT-TCCAA-TAAAGGG------C-----------------------AACA--T-GAGAATAACA--------CAT----------------ACA------GGT--G--TGTACAT-------AT-------ATCAG-CAAA--GAAAAG----ATAAGCG---ATTA--CA--------TAACACAGAGTTAC---A-------ACT--ACA-AA---G---TT--------TG------C-T--------GTA-C---------------GT----A-AT-TGTT--AAAAAT--AAATTT--TCCA---ATTA--G--AT-TTAAAATTGATGG-CTC-TTCAGAACAC--AGC-----ATATATATGTT----------T--GTCCATCATTCAATGCAATAAAA--TTCTGC-ACATTTTTT-T--T--CT--AT-GACATCAAG----TA-AAGGTTT-TCTTTCCACAAT-AAAATGGTCACATTT--GAGCAAAAATTGAATTT-AAT-CTCTT-AA---TGAA-CCA-------------G---------------CAatccctaatactcgatgcatttaatagctagtacgtagtacgacagtg
gi|16 : agACAT-A-------TTTTATTT-TCCTA-TCAAGGG------C-----CCTCGAG--GG-----ACAACA--T----GATAACA--------CAT----------------ACA------AG---
gi|5 : TA-------TTTTATTT-TCCAA-TCAAGGG------C-----CCTCAAG--GG-----GCAACA--T-GAGAATAACA--------CAT----------------ACA------AGT--G--TATACAT-------AT-------ATCAG-CAAA--GAAAAG----AGAAATT---ATTA--CA--------CAGCACAGAGTTAC---A-------ACT--ACA-GA-------AT--------CG------C-T--------GCA-C---------------ATGATCA-GT-TGTT--AAAAAT--GAATTT--CCCA---ATTA--G--AT-TTAAAATTAATGG-TTC-TTCAGAACAC--AACATA-GATATAAATTTT----------T--GTTCATCATTCATTGCAATAAAA--TTCTGC-ACATTTTTT-T--T--TTAGATGG-CATCAA------AAAAAGTTT-TCTTTCCGCAAT-AAAGTTTTCACATGT--GA-TAAAAAA------------------AA--ATGAA-TAT-------------G-------------------------------TTCCT-A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATCA--AT-TTGTGAGCAGAGA-------TGCGTAATT----T--ACAt
gi|4 : TA-------TTTTATTT-TCCAA-TCAAGGG------C-----TCTCAAG--GG-----GCAACA--T-GAAAACAACA--------CATATATACATGTACATGCACATGTGTAAGT--G--TATACAT-------G--------GTC-G-CAAA--GAAAAGCTGAAGAAGTG---A----------------AGCA---AATTAT---ACAAAATCACTGTACATGG---TCAGTTACA-----TA------TAT--------ACA-T---------------GT----A-GT--ATT--AAAGAT--AAATTT--CTCA---ATTA--T--AT-TTAAAATTGATGG-CTCTTT---AAC-CGGAGCAAT-AA-----ATTTT----------T--GTTCATCATTCAGTGCAGTAAAA--TTCTGC-ACATTGTTT-T--T--CT--AT-GACATCAAGTAAATA-AAGG-TTATGTTTCAGCAAT-AAAAT--------TT--G------AAATCA---TATAT-AT-TT-AACCG-GAG-CAA-------------GTTGCATTTGTTA---CAAA-TA-CGT--TCATGTCT-A-GTAACTG-TAGA-ATAT-CTACAAAC-----------------TTGTGAGCAGAAA-------TGCGTAATT----T--ACAA-ATATGAAGATCTTTAAAATTGAAAT-T-GTAAtatacatcttctgaaattgaaccttttttaacttatcaagta
gi|3 : ----AG--GG-----GCAAC---TTGAGAATAATA--------TAT----------------ACA------ATT--G--TATACAA-------AT-------ATCAG-CAAA--GAAAAG----AGAAGAG---ATTATACATA------TAGCACAGAGTTAC---ATGCA---ACT--ACA-GA---A---TCGCTGTACATGGTCAGTTGC--------ATATC---------------AT----ATAT-TGTT--AAAAAT---AAATT--TCCAG--ATTA--G--AT-TTATAATTGATGG-CTCTT-CAGAACAC--AACA-----TATATAT---ATA-AAT--TTTTGTTCATCATTCAATGTAATAAAA--TTCTGC-ACATTTTTT-T--C--T---AT-GGCATCAAGT----A-AAGGTTT-TCTTTCTGCAAT-TAAATTTTCACATTT--GATCAAAAAATGAATTT---TGCTCCT-AA---TGAACCAATGTTGCATTTGTTA---------------CAAA-TA-CGT--TCATTCCT-A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCA-GAAATGAAATTGTGTAATTTGTAT--ACAT-ATAT-AG-ATCTcttcatcacgtatctaaaaccaatgt
gi|12 : caG--GG-----C-AACA--T-GAGAATAACATGCA----CAT----------------ACA------GGT--G--TATACAT-------AA-------ATTAT----A--TAAG-G----AGAAGTG---ATTT--CATATAGGCCTAGCACAGAGTTAC---A-------AC--AACA-GA---T---Ttctgaaattgaaatttttaacttcatcaagataattttcaaaaccaaagtgctccttaagtttaatt
gi|11 : gGAGGATAACA--------CAT----------------ACA------AGT--G--TATATAT-------AT-------TTTGG-CAAAAAGAAAAG----AGAAGTC---ATTA--AA--------TAGCA------TAT---A--------------------------T--------TG-------------------------------------GG----A-AA-TAT-----AAAT--T----T--CCCA---AATA--G--AT-TTAAAAGTGATGG-TTCTTT-AGAACAA--TGTATTAAATAAATAcgct
gi|14 : -GA---T---TA--------CA------TG---------GTA-T---------------AT----A--T-TGGT--AAAGAT----GATTATCCCA---ATTA--G--AT-TTAAAATTAATGG-ATC--TCAGAACAC--catatctatgtacag
gi|6 : tAAAAT--T---TT--TCCC---ATTATTG--ATTTTTAAAATGATGGGCTCTTTCAGAACAC--AG------ATATATATATTATAAAAT-------TTCATCATTCAAAGCAATTAAAATT-CTGCCACATTTATT-TTCC--TT--AT-G-CATCAAGT----ATAAGGTTTATCTTTCCACAAA-AAAAATTTCACAGTTTGAAGCAAAAAATTAATT---AT-CTCTTCAA--GTGAA-CAA-------------G---------------CAAA-TAGCAT--TCATTCCT-ATGTAA-TGTTAGA-ATATTCTACCAACT-TA-ATCATTACCATCTTCTGAGCAGAAA-------TGCGTAATT----TTAACAA-AA---AGAATCTAT-ATATTTCATT-TGAT-ATAG-TCTAAGTCAATATGAA-TTTGGACCTAACC-TTAGGGAAG-AAAGGTCACCAAGAGTAT-TATTTTTTTTTTTTTACATT-TTTTATGAATTGGt
gi|9 : aagTT-T--CAGTG--AT-G-CTTCAA--------AAAGTTTTTCTTTCCACCAATGAAATTTTCACATTC--GAGCAACA--TGAATTTCCAT-TTCTC-AA--ATGAA-CCA-------------GAGTTGTATTCTGTTACAAAATC-CGTGTTCATTTCTTAAGTAAATGTTAGAGATAT--TACCAACTTTACATAATTA--AT-TTGTTAGCA-GAA-------TGCGTAATT----T--GTAACAAAT-AGA--TTAT-ATATTTC--TCT-ATAACAAT---------ATATGAAGTGCGCATT-GAC--TTAGGGTAGAAA--GTCA-CAAGA--ATGTA-------TTTTTTACATTATATCATGATTTGG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTATTTGTTCCAATCAAGGGCTCTCAAGCGAGCCTCTCAAGGGGCAAACATGAGAACACAACATGTATGTACGTGCG
Unaligned ( gi|15 ): TATTTTATTTTATAAAGCATCCTCAAAGGGCAACATGATCTAGAACACATACAAGTATAT
Unaligned ( gi|17 ): GGGCAACAGGAGAACAAATACTTGTAAGTGTATACATATATTAGCAAAATGAAAAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 55555555555555555555 1 111 1 33333 333333333333333333333 1 1 11111 11 11 44444 111 11 1 222222 11 11 777777777777777777777 111 11 11 33333333333333 11111111 2222222222222222222222 1111111111111111 111111 3333333333333333333 1111 000000000000000000000000000000000000000000000000000000000000000000000 111 1 3333 4444444444444444444 11 1 1 22222222 1 1111 11111 111111 88888888888888888888888888888888888888888888888888888 1111 1 111111 1111111 2222 11 222222222 2 111 22 2
lowQualScore : 77 3 44444444444444444444 3 0 2 000 0 88888 4 444444444444444444444 0 0 0 55555 11 33 1 2 00000 2 777 33 3 0 3 888888 33 33 444444444444444444444 22 8 444 66 00 4 4 0 66 4 99999999999999 3 3 44 3 3 3 3 9999 11111111 3 7777777777777777777777 44 44 5555555555555555 4 55 66 9999 888 444444 7777777777777777777 0 888 0000 66 888888888888888888888888888888888888888888888888888888888888888888888 66 777 1 333 66 4 66 4 2 1 1 66 5555 6666666666666666666 5 77 5 5 5 6 11 0 0 11111111 1 5 2222 00000 666666 66 22 0 22222222222222222222222222222222222222222222222222222 6 6 99 3333 3 6 6 999 99 6 999999 4444444 88 1 6 44 0000 33 3 222222222 3 11 1 444 00 1 7 7 6 3 6 7 7 7 1 0 1
lowQualScore : .. . .................... . . . ... . ..... . ..................... . . . ..... .. .. . . ..... . ... .. . . . ...... .. .. ..................... .. . ... .. .. . . . .. . .............. . . .. . . . . .... ........ . ...................... .. .. ................ . .. .. .... ... ...... ................... . ... .... .. ..................................................................... .. ... . ... .. . .. . . . . .. .... ................... . .. . . . . .. . . ........ . . .... ..... ...... .. .. . ..................................................... . . .. .... . . . ... .. . ...... ....... .. . . .. .... .. . ......... . .. . ... .. . . . . . . . . . . . .
lowQualScore : 55 3 00000000000000000000 2 0 0 000 0 88888 0 222222222222222222222 0 2 0 00000 22 88 0 5 22222 5 000 88 2 0 2 888888 88 22 888888888888888888888 00 8 000 99 66 4 4 9 11 0 11111111111111 3 3 66 3 1 1 1 6666 22222222 1 3333333333333333333333 22 66 8888888888888888 0 55 11 4444 888 444444 6666666666666666666 1 888 6666 99 333333333333333333333333333333333333333333333333333333333333333333333 99 111 0 999 11 4 11 4 8 1 9 99 4444 4444444444444444444 7 99 7 7 7 3 99 0 0 77777777 4 7 1111 11111 444444 44 00 7 00000000000000000000000000000000000000000000000000000 7 7 22 5555 3 7 7 555 22 7 222222 3333333 88 0 7 66 0000 88 2 333333333 3 77 0 777 00 0 3 3 7 3 7 3 3 3 0 7 0
consensus : CAAACGTTGGTAAA-TCAAAAA-ATAGTA--TTCATTAT--TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGT---ATGACANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAGTC------ACAAG--AAAAAATTCC-TGANANTATTAG-AA-----AAANAGA---ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT--GAATTTCCCA---ATTAG--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATGTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTT-TTT-TTCT--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----T--ACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAA-TTCGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
Reference ( family-5499 ) : CAAACGTTGGTAAA-TCAAAAANATAGTANATCCANNANAANCTTAGTGGACCGAAATTGAGA-AATCGCCTGGC-TGTGT---A-GATATGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AANTCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAGTC------ACAAG--AAAAAATTCCGTGANATTGTTAG-AACTAGCAANNAGA---ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT--NAANTTCCCA---ATTAG--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATNTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTT-TTT-TCCT--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----T--ACAA-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGTCAATATGAAGTNCGNACCTGACC-TTAGGGNAGAAAAGGTCACCAAGAGTATGTATTTTTTTTTTTTTACATTATNTCATGANTTGG
gi|1 : CAAA---TGGTAAAATCCAAAA--TAAT---TTCATTAT--TTTTAGTGGACCGAAATTGAGA-AATTGCCTAAC-TGTGT---G-GACAAGAATAGC-A-------TG-GA--AA---TGGT-AACGGAAA-GAAAG-TTC-ACAGGGGAA--AAGTCACGAGAATAAAGCCT-AT-----TATATCA---GAAAAAA--GTCGTAGG-AAAA-GTC------ACAAG--GAATTTTTCC---AAAGTAT-----------AAACATA---ACATTATTTTATTT--TCCAA-TCAA-GGGCC------A--------------G-GG-G-A--A-CATTG-AGA-ATAA----CA--------C-A-AC----------------------AAG---G--TATACAT-------AT-------ATCAG-C--AAA--GAAGAG----AGAAGTG---A------TTACA--------TTA--------GCA---AGTTAC---A----ACTTAACAGA---TTTTG--------TG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT--TAAATTCCCA---ATTAG--ATCTT--AAAATTGATGG-CTCTTTCAGAACAC--AGCACTAATATATATGTTATAGAA----TA--TGTTCATCATTCAAAGCAAT-AAAAATTTCTGC-ACATTT-ATT-TCTT--AT-G-CATCAAG----TTACAAGGTTTATCTTTCCAC-AAAAAAATGT----TCACA-G---TT------GA-GCAAAAAATTAATTT--AAATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CAT--TCATTCCT--ATGTAA-TGTTAGA-ATAT-CTACCAACTCTA-ATCATTA--AT-TTCTGAGCA-AAA------TGCGTAATT----T--ACAG-AAAT-AGAATCTATATATTT--CAATT--ATAATAGTTCTAAGT-AATATGAA-TTTGGACC-AACCTTTAGGGAAGAAAAGGTCACCAAGA-TATGTA--TTTTTTTTTTTACATTATTTTATGAATTGG
gi|10 : AAATTGAGA-AATTGCCTG-C-TGTGT---ATGGTAAGAATAGC-A-------TAAGA--AAC--TGGTGAACGGAAA-GAAAG-T-T-ACAG--AAA--ATTTCACGAGAAAAAAGCCTCATACATGTATATCATAGGAAAAAA--GTCGTAGG-AAAAAGTC------ACAGG--AAAA---TCCCTAATACT
gi|11 : a-G-AGG-ATAA----CA--------C-ATAC----------------------AAGT--G--TATATAT-------AT-------TTTGG-CAAAAA--GAAAAG----AGAAGTC---A------TTAAA--------T-A--------GCATATATTGGG---A----AAT--ATAAA---TTTCC--------C------------------------------------------------------------AAAT--AGATT-------------------T--AAAAGTGATGG-TTCTTT-AGAACAcgatgcatttaatagctagtacgtagtacgacagtg
gi|12 : --------------G-GG-GCA--A-CAT-G-AGA-ATAACATGCA--------C-ATAC----------------------AGGT--G--TATACAT-------AA-------ATTAT-A--TAA--G----G----AGAAGTG---A------TTTCATATAGGCCT-A--------GCACAGAGTTAC---A----ACA--ACAGA----TTCG--------Catgtattaaataaatacatatctatgtacag
gi|13 : TTATTTGTTCCAA-TCAA-GGGCTC--TC-AAGCGAGCCTCTCAAG-GG-GCA--AACAT-G-AG----AA----CA--------C-A-AC----------------------ATGT--A--TGTACGT-------t
gi|14 : GA---TTACA--------TG------------GTAT-------AT----A-------------------T-TGGT--AAAGAT--GATTATCCCA---ATTAG--AT-TT--AAAATTAATGG-ATC--TCAGAACAC--gcg
gi|15 : tTATTTTATTT--T---A-TAAA-GCATCC--TC-A--------------AAGG-GCA--A-CAT-G-ATCTAGAA----CA--------C-ATAC----------------------AAGT--A--TATt
gi|16 : ---ACAT-ATTTTATTT--TCCTA-TCAA-GGGCCC--TCGA--------------G-GG-ACA--A-CAT-G-----ATAA----CA--------C-ATAC----------------------AAGT--
gi|17 : -GG-GCA--A-CAG-G-AGA-ACAAA---TA--------C-TTGT----------------------AAGT--G--TATACAT-------AT-------ATTAG-C--AAAATGAAAAG----
gi|2 : TTGGTAAA-TCAAAAATATAGTAT-TCTAATAAAATCTTAGTGGACAGAAAATGAGATAATTTCCTGGCCTGTGT---TTGACATGAATAGC-AGCTACTATAGGAGTAG---TGGT-AATGGAAAAGAAAGGT-CTATAAGGAAACAGAATCACGAGAAAAAAGTCTCAT-----TATATCAT--TTATGAA--G-----GG-AAAAAGTCTTAATCACAAG--AAAAAATTCCGTGATAGTACTAGTAACTAG-AACAAGAGAGACA--GTGTTATTTC-TCCAA-TC-A-GTGCTC--TC-GCAGTAC--------G-GA-GCA--A-GAT-G-AGA-ATAG----AAGATTGGGGC-ATAC----------------------AAGTCCGATTACACATTCTATTAAT-------ATCAGAC--AAA--GAAAAG----AG-AGTGTATA------TTACA--------T-A--------GCACAGAGTTGCAATA----ACT--ACAAACTGTTTTGGGCTGTAACGGTTGGTACAAATGTACTGATATGAT----A------------------ATATGTTACAAAAATAAGAAATTTCCAATCATTAGTAAT-TC--AAAATTGATGC-CTC-TTCAGAAC-C--AGC----ATAT---TATTATA--A----TTCATCTTCATCGTTCAATGCAAT-AAAA--TCCT-C-ACATTT-TTTGTTCT--AT-G-GATCA
gi|3 : ttcaaatttggcattatggagcattttacagatgtcgcacctctgagata-A--------------G-GG-GCA--A-CTT-G-AGA-ATAA----TA--------T-ATAC----------------------AATT--G--TATACAA-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGAG---A------TTATACATA----T-A--------GCACAGAGTTAC---ATGCAACT--ACAGA---AT-CG--------C------------TGTAC-------AT----GGTCAGTTGCATATCATATAT-TGTT--AAAAAT--AAATTTCCAG---ATTAG--AT-TT--ATAATTGATGG-CTCTT-CAGAACAC--AAC----ATATATA---TATA--AATTTT---TGTTCATCATTCAATGTAAT-AAAA--TTCTGC-ACATTT-TTT-T-CT--ATGG-CATCAAG----T-A-AAGGTTT-TCTTTCTGC-AATTAAATTT----TCACA-T---TT------GA-TCAAAAAATGAATTT--T--GCTCCT-AA-TGAACCAATGTTGCATTTGTTA---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAATGAAATTGTGTAATTTGTAT--ACAT-ATAT-AG-ATCT
gi|4 : caTATTTTATTT--TCCAA-TCAA-GGGCTC--TC-AA-------------G-GG-GCA--A-CAT-G-AAA-ACAA----CA--------C-ATATATACATGTACATGCACATGTGTAAGT--G--TATACAT-------G--------GTC-G-C--AAA--GAAAAGCTGAAGAAGTG---AAGCAAATTATA--------C-AAAATCACTGTACATGGT--C---A----GTT--ACATA---TAT-A--------CA-----------TGTA--------GT----A-----------------------TT--AAAGAT--AAATTTCTCA---ATTAT--AT-TT--AAAATTGATGG-CTCTTT---AAC-CGGAGCA---ATAAAT---TT----------T---TGTTCATCATTCAGTGCAGT-AAAA--TTCTGC-ACATTG-TTT-TTCT--AT-GACATCAAGTAAAT-A-AAGGTTA-TGTTTCAGC-AATAAAATTTGAAATCATA-TATATTTAACCGGA-GC--AAGTTGCATTT--G------TT-A---------------------------------------CAAA-TA-CGT--TCATGTCT--A-GTAACTG-TAGA-ATAT-CTACAAAC-----------------TTGTGAGCAGAAA------TGCGTAATT----T--ACAA-ATATGAAGATCTTTAAAATTGAA-ATT--GTAACtctgaaattgaaatttttaacttcatcaagataattttcaaaaccaaagtgctccttaagtttaatt
gi|5 : TATTTTATTT--TCCAA-TCAA-GGGCCC--TC-AA-------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAATT---A------TTACA--------C-A--------GCACAGAGTTAC---A----ACT--ACAGA----ATCG--------C------------TGCAC-------ATGATCA------------------GT-TGTT--AAAAAT--GAATTTCCCA---ATTAG--AT-TT--AAAATTAATGG-TTC-TTCAGAACAC--AACATAGATATAAATTT-----------T---TGTTCATCATTCATTGCAAT-AAAA--TTCTGC-ACATTT-TTT-TTTTAGATGG-CATCAAA------A-AAAGTTT-TCTTTCCGC-AATAAAGTTT----TCACA-T---GT------GA--TAAAAAA-------------------AAATG-------------------------------------AA-TA-TG------TTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATCA--AT-TTGTGAGCAGAGA------TGCGTAATT----T--ACAT-ATAC-Attcatcacgtatctaaaaccaatgt
gi|6 : AAAAT--T--TTTCCCATT-ATT-G--AT-TTTTAAAAT-GATGGGCTCTTTCAGAACAC--AG-----ATATATATATTATA--A----A---ATTTCATCATTCAAAGCAATTAAAA--TTCTGCCACATTTATTT-TCCTT-AT-G-CATCAAG----T-ATAAGGTTTATCTTTCCAC-AAAAAAAATT----TCACAGT---TT------GAAGCAAAAAATTAATT---A--TCTCTTCAAGTGAA-CAA-------------G---------------CAAA-TAGCAT--TCATTCCT--ATGTAA-TGTTAGA-ATATTCTACCAACTT-A-ATCATTACCATCTTCTGAGCAGAAA------TGCGTAATT----TTAACAA-AA---AGAATCTATATATTT--C-ATTTGAT-ATAG-TCTAAGTCAATATGAA-TTTGGACCTAACC-TTAGGGAAG-AAAGGTCACCAAGAGTAT-TATTTTTTTTTTTTTACATT-TTTTATGAATTGGtcttctgaaattgaaccttttttaacttatcaagta
gi|7 : aagCAAACGTTGGTAAA-TCAAAAAAA----AAATTCATAAT--GCTTAGTGGACCAAAAT--AGA-AATCGCC--GC-TGTGTTTGA-AATATGAATATCCA-------TAAGA--AAGATTAGT-AAATGGAA-GAAAG-T-C-ACAGG-AAA--AAATCACGAGAAAAAAGTCCCAT----ATATAT-AT--GAAAAAAACGTCGTAGGAAAAAAGTC------ACAAGAAAAAAAATTCC---AGATTGTTAG-AA----CAAAGA-A---ACA-TATTTGATTT--TCCAATTCAAGGGGCCCCATC-A--------------G-GGCGCAAGA-AAT-GAAGA-AT-A----CA--------CGATAC----------------------AAGT--G--TATACAT-------ATTACAATCATCAG-C--
gi|8 : ttcacttttcatatatggggagacgtcatatacatgtacatctAGA---ACAT-ATTTTATTT--TCCAA-TAAA-GGGC-----------------------------A--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AGGT--G--TGTACAT-------AT-------ATCAG-C--AAA--GAAAAG----ATAAGCG---A------TTACA--------T-A--------ACACAGAGTTAC---A----ACT--ACAAA---GTTTG--------C------------TGTAC-------GT----A------------------AT-TGTT--AAAAAT--AAATTTTCCA---ATTAG--AT-TT--AAAATTGATGG-CTC-TTCAGAACAC--AGC----ATATATATGT-----------T---TGTCCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTT-TTT-TTCT--AT-GACATCAAG----T-A-AAGGTTT-TCTTTCCAC-AATAAAATGG----TCACA-T---TT------GA-GCAAAAATTGAATTTA-A--TCTCTT-AA-TGAA-CCA-------------G---------------CA
gi|9 : --AT-G-CTTCAA-------A-AAGTTTT-TCTTTCCACCAATGAAATTT----TCACA-T---TC------GA-GCAACA--TGAATTTCCA--TTTCTC-AAATGAA-CCA-------------GAGTTGTATTCTGTTACAAAATC-CGTGTTCATTTCTTAA-GTAAATGTTAGAGATAT--TACCAACTTTACATAATTA--AT-TTGTTAGCAGAA-------TGCGTAATT----T--GTAACAAAT-AGA--TTATATATTT--C-TCT--ATAACAAT---------ATATGAAGTGCGCAT-TGAC--TTAGGGTAGAAA--GTCAC-AAGA--ATGTATTTT-------TTACATTATATCATGATTTGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 2222222 2222 1 111 1 11 11 333333333333333333333 1 1 2 1 11 11 44444 111 11 11 222222 222 333 5555555555555 11 33333333333333 11111111 2222222222222222222222 1111111111111111 111111 333333333333333333 11111111 000000000000000000000000000000000000000000000000000000000000000000000 11111 2222222 4444444444444444444444 1 1 2222222 1 1111 11111 111111 888888888888888888888888888888888888888888888888888 1111 1 111111 1111 2222 11 222222222 11 11 22 22
lowQualScore : 77 3 6666666 7 8 8888 3 0 000 0 11 33 1 444444444444444444444 0 0 0 0 0 11 33 1 2 00000 2 777 33 3 33 888888 000 222 1 1 3333333333333 1 0 8 88 00 4 4 8888 4 99999999999999 3 3 44 3 3 3 3 9999 11111111 3 7777777777777777777777 44 44 5555555555555555 4 55 66 9999 888 444444 777777777777777777 0 22222222 66 888888888888888888888888888888888888888888888888888888888888888888888 66 00000 66 77777 4 66 4 7 33 1 66 8888888 2222222222222222222222 5 77 5 5 77 66 0 0 1111111 1 5 2222 00000 666666 66 22 0 222222222222222222222222222222222222222222222222222 6 6 99 3333 3 6 6 999 99 6 999999 4444 77 1 6 44 0000 33 3 000000000 44 44 00 7 7 6 00 6 7 7 7
lowQualScore : .. . ....... . . .... . . ... . .. .. . ..................... . . . . . .. .. . . ..... . ... .. . .. ...... ... ... . . ............. . . . .. .. . . .... . .............. . . .. . . . . .... ........ . ...................... .. .. ................ . .. .. .... ... ...... .................. . ........ .. ..................................................................... .. ..... .. ..... . .. . . .. . .. ....... ...................... . .. . . .. .. . . ....... . . .... ..... ...... .. .. . ................................................... . . .. .... . . . ... .. . ...... .... .. . . .. .... .. . ......... .. .. .. . . . .. . . . .
lowQualScore : 55 3 7777777 3 3 3333 2 0 000 0 00 88 0 222222222222222222222 0 2 0 0 0 22 88 2 5 22222 5 000 88 2 22 888888 888 000 0 0 0000000000000 0 2 0 99 66 4 4 1111 0 11111111111111 3 3 66 3 3 1 1 6666 22222222 1 3333333333333333333333 22 66 8888888888888888 0 55 11 4444 888 444444 666666666666666666 1 22222222 99 333333333333333333333333333333333333333333333333333333333333333333333 11 33333 11 88888 4 11 4 3 00 9 99 4444444 3333333333333333333333 7 99 7 7 99 99 0 0 7777777 4 7 1111 11111 444444 44 00 7 000000000000000000000000000000000000000000000000000 7 7 22 5555 3 7 7 555 22 7 222222 2222 77 0 7 66 0000 88 2 777777777 00 00 00 3 3 7 77 7 3 3 3
consensus : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-TC-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAGTC------ACAAG--AAAAAATTCC-TGANANTATTAG-------AACAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CA-TG-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------TA--------GCACAGAGTTACA----A---CT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTTA--AAAATAA---ATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGC---A---ATATATATGTTAT--AA----T-TG---TTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----TA-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--ATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
Reference ( family-5499 ) : CAAACGTTGGTAAA-TCAAAAA-ATAGTATTCATTAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTATGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-TC-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAGTC------ACAAG--AAAAAATTCC-TGANANTATTAG-------AAAAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CA-TG-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------TA--------GCACAGAGTTACA----A---CT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTTA--AAAATGA---ATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGC---A---ATATATATGTTAT--AA----T-TG---TTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----TA-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--ATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
gi|1 : CAAA---TGGTAAAATCCAAAA--TAAT-TTCATTAT----TTTTAGTGGACCGAAATTGAGA-AATTGCCTAAC-TGTGTG-GA--CAAGAATAGC-A-------TG-GA--AA---TGGT-AACGGAAA-GAAAGTTC-ACAGGGGAA--AAGTCACGAGAATAAAGCCT-AT-----TATATCA---GAAAAAA--GTCGTAGG--AAAAGTC------ACAAG--GAATTTTTCC---AAAGTAT------------AAACATA-ACATTATTTTATTT--TCCAA-TCAA-GGGC-----C-A--------------G-GG-G-A--A-CATTG-AGA-ATAA----CA--------C-A-AC----------------------AAG---G--TATACAT-------AT-------ATCAG-C--AAA--GAAGAG----AGAAGTG---A------TTACAT-------TA--------GCA---AGTTACA----A---CTTAACAGA---TTTTG--------TG-----------TGTAC-------GT----A------------------AT-TGTTA--AAAATTA---AATTCCCA--ATTA--G--ATCTT--AAAATTGATGG-CTCTTTCAGAACAC--AGCACTA---ATATATATGTTATAGAA----TATG---TTCATCATTCAAAGCAAT-AAAAATTTCTGC-ACATTTATT-TCT--T--AT-G-CATCAAGT---TACAAGGTTTATCTTTCCAC-AAAAAAATGT----TCACA-G---TT------GA-GCAAAAAATTAATTTAAATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CAT--TCATTCCT--ATGTAA-TGTTAGA-ATAT-CTACCAACTCTA-ATCATTA--AT-TTCTGAGCA-AAA------TGCGTAATT----TACAG-AAAT-AGAATCTATATATTT--CAATT--ATAATAGTTCTAAGT-AATATGAATT-TGGACC-AACCTTTAGGGAAGAAAAGGTCACCAAGA-TATGTA--TTTTTTTTTTTACATTATTTTATGAATTGG
gi|10 : AAATTGAGA-AATTGCCTG-C-TGTGTATGG--TAAGAATAGC-A-------TAAGA--AAC--TGGTGAACGGAAA-GAAAG-TT-ACAG--AAA--ATTTCACGAGAAAAAAGCCTCATACATGTATATCATAGGAAAAAA--GTCGTAGG-AAAAAGTC------ACAGG----AAAATCCC-TAATACT
gi|11 : aG-AGG-ATAA----CA--------C-ATAC----------------------AAGT--G--TATATAT-------AT-------TTTGG-CAAAAA--GAAAAG----AGAAGTC---A------TTAAA--------TA--------GCATATATTGGGA----A---AT--ATAAA---TTTCC--------C------------------------------------------------------------AAATAG---ATT--------------------T--AAAAGTGATGG-TTCTTT-AGAACAcgatgcatttaatagctagtacgtagtacgacagtg
gi|12 : --------------G-GG-GCA--A-CA-TG-AGA-ATAACATGCA--------C-ATAC----------------------AGGT--G--TATACAT-------AA-------ATTAT-A--TAA--G----G----AGAAGTG---A------TTTCATATAGGCCTA--------GCACAGAGTTACA----A---CA--ACAGA----TTCG--------Catgtattaaataaatacatatctatgtacag
gi|13 : TTATTTGTTCCAA-TCAA-GGGCTC--TC-AAGCGAGCCTCTCAAG-GG-GCA--AACA-TG-AG----AA----CA--------C-A-AC----------------------ATGT--A--TGTACGT-------t
gi|14 : GA---TTACA--------TG------------GTAT-------AT----A-------------------T-TGGTA--AAGATGA---TTATCCCA--ATTA--G--AT-TT--AAAATTAATGG-ATC--TCAGAACAC--gcg
gi|15 : tTATTTTATTT--T---A-TAAA-GCATCC--TC-A--------------AAGG-GCA--A-CA-TG-ATCTAGAA----CA--------C-ATAC----------------------AAGT--A--TATt
gi|16 : -ACAT-ATTTTATTT--TCCTA-TCAA-GGGCCC--TCGA--------------G-GG-ACA--A-CA-TG-----ATAA----CA--------C-ATAC----------------------AAGT--
gi|17 : -GG-GCA--A-CA-GG-AGA-ACAAA---TA--------C-TTGT----------------------AAGT--G--TATACAT-------AT-------ATTAG-C--AAAATGAAAAG----
gi|2 : TTGGTAAA-TCAAAAATATAGTATTC-TAATAAAATCTTAGTGGACAGAAAATGAGATAATTTCCTGGCCTGTGTTTGA--CATGAATAGC-AGCTACTATAGGAGTAG---TGGT-AATGGAAAAGAAAGGTCTATAAGGAAACAGAATCACGAGAAAAAAGTCTCAT-----TATATCAT--TTATGAA--G-----GG-AAAAAGTCTTAATCACAAG--AAAAAATTCCGTGATAGTACTAGTAACTAGAACAAGAGAGACAGTGTT--ATTTC-TCCAA-TCA--GTGCTC--TC-GCAGTAC--------G-GA-GCA--A-GA-TG-AGA-ATAG----AAGATTGGGGC-ATAC----------------------AAGTCCGATTACACATTCTATTAAT-------ATCAGAC--AAA--GAAAAG----AGA-GTGTATA------TTACA--------TA--------GCACAGAGTTGCA----ATAACT--ACAAACTGTTTTGGGCTGTAACGGTTGGTACAAATGTACTGATATGAT----A------------------ATATGTTACAAAAATAAGAAATTTCCAATCATTA--GTAAT-TC--AAAATTGATGC-CTCTT-CAGAAC-C--AGC---A------TAT-TATTAT--AA----T-TCATCTTCATCGTTCAATGCAAT-AAAA--TCCT-C-ACATTTTTTGTTC--T--AT-G-GATCA
gi|3 : ttcaaatttggcattatggagcattttacagatgtcgcacctctgagata-A--------------G-GG-GCA--A-CT-TG-AGA-ATAA----TA--------T-ATAC----------------------AATT--G--TATACAA-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGAG---A------TTATACATA----TA--------GCACAGAGTTACATGCAA---CT--ACAGA---AT-CG--------C------------TGTAC-------AT----GGTCAGTTGCATATCATATAT-TGTTA--AAAATAA---ATTTCCAG--ATTA--G--AT-TT--ATAATTGATGG-CTCTT-CAGAACAC--AAC-------ATATATA---TAT--AAATTTT-TG---TTCATCATTCAATGTAAT-AAAA--TTCTGC-ACA-TTTTT-TTC--T--ATGG-CATCAAG----TA-AAGGTTT-TCTTTCTGC-AATTAAATTT----TCACA-T---TT------GA-TCAAAAAATGAATTT--TGCTCCT-AA-TGAACCAATGTTGCATTTGTTA---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAATGAAATTGTGTAATTTGTATACAT-ATAT-AG-ATCT
gi|4 : caTATTTTATTT--TCCAA-TCAA-GGGCTC--TC-AA-------------G-GG-GCA--A-CA-TG-AAA-ACAA----CA--------C-ATATATACATGTACATGCACATGTGTAAGT--G--TATACAT-------G--------GTC-G-C--AAA--GAAAAGCTGAAGAAGTG---AAGCAAATTATA--------CAAAATCACTGTACATGGT--CA----G---TT--ACATA---TAT-A--------CA-----------TGTA--------GT----A-----------------------TTA--AAGATAA---ATTTCTCA--ATTA--T--AT-TT--AAAATTGATGG-CTCTTT---AAC-CGGAGC---A---ATAAAT---TT----------T-TG---TTCATCATTCAGTGCAGT-AAAA--TTCTGC-ACATTGTTT-TTC--T--AT-GACATCAAGTAAATA-AAGGTTA-TGTTTCAGC-AATAAAATTTGAAATCATA-TATATTTAACCGGA-GC--AAGTTGCATTT--G----TT-A---------------------------------------CAAA-TA-CGT--TCATGTCT--A-GTAACTG-TAGA-ATAT-CTACAAAC-----------------TTGTGAGCAGAAA------TGCGTAATT----TACAA-ATATGAAGATCTTTAAAATTGAA-ATT--GTAACtctgaaattgaaatttttaacttcatcaagataattttcaaaaccaaagtgctccttaagtttaatt
gi|5 : TATTTTATTT--TCCAA-TCAA-GGGCCC--TC-AA-------------G-GG-GCA--A-CA-TG-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAATT---A------TTACA--------CA--------GCACAGAGTTACA----A---CT--ACAGA----ATCG--------C------------TGCAC-------ATGATCA------------------GT-TGTTA--AAAATGA---ATTTCCCA--ATTA--G--AT-TT--AAAATTAATGG-TTC-TTCAGAACAC--AAC---ATAGATATAAAT-TT----------T-TG---TTCATCATTCATTGCAAT-AAAA--TTCTGC-ACATTTTTT-TTT--TAGATGG-CATCAAA-----A-AAAGTTT-TCTTTCCGC-AATAAAGTTT----TCACA-T---GT------GA--TAAAAAA-----------------AAATG-------------------------------------AA-TA-TG------TTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATCA--AT-TTGTGAGCAGAGA------TGCGTAATT----TACAT-ATAC-Attcatcacgtatctaaaaccaatgt
gi|6 : --AAAAT------TTTTCCC--ATTATTG--AT-TTTTAAAAT-GATGGGCTCTTTCAGAACAC--AG--------ATATATATATTAT--AA----A-AT---TTCATCATTCAAAGCAATTAAAA--TTCTGCCACATTTATT-TTCCTT--AT-G-CATCAAG----TATAAGGTTTATCTTTCCAC-AAAAAAAATT----TCACAGT---TT------GAAGCAAAAAATTAATT---ATCTCTTCAAGTGAA-CAA-------------G---------------CAAA-TAGCAT--TCATTCCT--ATGTAA-TGTTAGA-ATATTCTACCAACTT-A-ATCATTACCATCTTCTGAGCAGAAA------TGCGTAATT----TTAAC-AAAA-AGAATCTATATATTT--C-ATTTGAT-ATAG-TCTAAGTCAATATGAATT-TGGACCTAACC-TTAGGGAAG-AAAGGTCACCAAGAGTAT-TATTTTTTTTTTTTTACATT-TTTTATGAATTGGtcttctgaaattgaaccttttttaacttatcaagta
gi|7 : aagCAAACGTTGGTAAA-TCAAAAA-AAAA-ATTCATAAT----GCTTAGTGGACCAAAAT--AGA-AATCGCC--GC-TGTGTTTGAAATATGAATATCCA-------TAAGA--AAGATTAGT-AAATGGAA-GAAAG-TC-ACAGG-AAA--AAATCACGAGAAAAAAGTCCCAT----ATATAT-AT--GAAAAAAACGTCGTAGGAAAAAAGTC------ACAAGAAAAAAAATTCC---AGATTGTTAG-------AACAAAGAA-ACA-TATTTGATTT--TCCAATTCAAGGGGCCCCATC-A--------------G-GGCGCAAGA-AA-TGAAGA-AT-A----CA--------CGATAC----------------------AAGT--G--TATACAT-------ATTACAATCATCAG-C--
gi|8 : ttcacttttcatatatggggagacgtcatatacatgtacatctAGA-ACAT-ATTTTATTT--TCCAA-TAAA-GGGC-----------------------------A--A-CA-TG-AGA-ATAA----CA--------C-ATAC----------------------AGGT--G--TGTACAT-------AT-------ATCAG-C--AAA--GAAAAG----ATAAGCG---A------TTACA--------TA--------ACACAGAGTTACA----A---CT--ACAAA---GTTTG--------C------------TGTAC-------GT----A------------------AT-TGTTA--AAAATAA---ATTTTCCA--ATTA--G--AT-TT--AAAATTGATGG-CTC-TTCAGAACAC--AGC-------ATATATATGT-----------T-TG---TCCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-GACATCAAG----TA-AAGGTTT-TCTTTCCAC-AATAAAATGG----TCACA-T---TT------GA-GCAAAAATTGAATTTA-ATCTCTT-AA-TGAA-CCA-------------G---------------CA
gi|9 : --AT-G-CTTCAA------A-AAGTTTT-TCTTTCCACCAATGAAATTT----TCACA-T---TC------GA-GCAACA--TGAATTTCCATTTCTC-AAATGAA-CCA-------------GAGTTGTATTCTGTTACAAAATC-CGTGTTCATTTCTTAA-GTAAATGTTAGAGATAT--TACCAACTTTACATAATTA--AT-TTGTTAGCAGAA-------TGCGTAATT----TGTAACAAAT-AGA--TTATATATTT--C-TCT--ATAACAAT---------ATATGAAGTGCGCAT-TGAC--TTAGGGTAGAAA--GTCAC-AAGA--ATGTATTTT-------TTACATTATATCATGATTTGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 2222222 2222 1 111 1 11 333333333333333333333 1 1 11111 11 11 44444 111 11 1 222222 222 333333333333333 11 11 33333333333333 11111111 2222222222222222222222 1111111111111111 111111 3333333333333333333 1111 000000000000000000000000000000000000000000000000000000000000000000000 1111 1 3333 4444444444444444444 1 1 22222222 1 1111 11111 111111 88888888888888888888888888888888888888888888888888888 1111 1 111111 1111 2222 11 222222222 11 11 22 22
lowQualScore : 77 3 2222222 7 8888 3 0 000 0 44 33 1 444444444444444444444 0 0 0 55555 11 33 1 2 00000 2 777 33 3 0 3 888888 000 999999999999999 7 6 1 0 8 66 00 4 4 0 66 4 99999999999999 3 3 44 3 3 3 3 9999 11111111 3 7777777777777777777777 44 44 5555555555555555 4 55 66 9999 888 444444 7777777777777777777 0 888 0000 66 888888888888888888888888888888888888888888888888888888888888888888888 66 0000 66 66 66 4 66 4 2 1 1 66 5555 6666666666666666666 5 77 5 5 77 66 0 0 11111111 1 5 2222 00000 666666 66 22 0 22222222222222222222222222222222222222222222222222222 6 6 99 3333 3 6 6 999 99 6 999999 4444 77 1 6 44 0000 33 3 000000000 44 44 00 7 7 6 00 6 7 7 7
lowQualScore : .. . ....... . .... . . ... . .. .. . ..................... . . . ..... .. .. . . ..... . ... .. . . . ...... ... ............... . . . . . .. .. . . . .. . .............. . . .. . . . . .... ........ . ...................... .. .. ................ . .. .. .... ... ...... ................... . ... .... .. ..................................................................... .. .... .. .. .. . .. . . . . .. .... ................... . .. . . .. .. . . ........ . . .... ..... ...... .. .. . ..................................................... . . .. .... . . . ... .. . ...... .... .. . . .. .... .. . ......... .. .. .. . . . .. . . . .
lowQualScore : 55 3 0000000 3 3333 2 0 000 0 22 88 0 222222222222222222222 0 2 0 00000 22 88 2 5 22222 5 000 88 2 0 2 888888 888 555555555555555 3 7 0 2 0 99 66 4 4 9 11 0 11111111111111 3 3 66 3 1 1 1 6666 22222222 1 3333333333333333333333 22 66 8888888888888888 0 55 11 4444 888 444444 6666666666666666666 1 888 6666 99 333333333333333333333333333333333333333333333333333333333333333333333 99 4444 11 11 11 4 11 4 8 1 9 99 4444 9999999999999999999 7 99 7 7 99 99 0 0 77777777 4 7 1111 11111 444444 44 00 7 00000000000000000000000000000000000000000000000000000 7 7 22 5555 3 7 7 555 22 7 222222 2222 77 0 7 66 0000 88 2 777777777 00 00 00 3 3 7 77 7 3 3 3
consensus : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATGTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
Reference ( family-5499 ) : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATGTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
gi|1 : CAAA---TGGTAAAATCCAAAA--TAAT-TTCATTAT----TTTTAGTGGACCGAAATTGAGA-AATTGCCTAAC-TGTGTG-GA--CAAGAATAGC-A-------TG-GA--AA---TGGT-AACGGAAA-GAAAG-TTC-ACAGGGGAA--AAGTCACGAGAATAAAGCCT-AT-----TATATCA---GAAAAAA--GTCGTAGG-AAAA-G------TCACAAG--GAATTTTTCC---AAAGT-------AT----A-AACATA-ACATTATTTTATTT--TCCAA-TCAA-GGGCC------A--------------G-GG-G-A--A-CATTG-AGA-ATAA----CA--------C-A-AC----------------------AAG---G--TATACAT-------AT-------ATCAG-C--AAA--GAAGAG----AGAAGTG---A------TTACA--------TTA--------GCA---AGTTAC---A----ACTTAACAGA---TTTTG--------TG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---TAAATTCCCA--ATTA--G--ATCTT--AAAATTGATGG-CTCTTTCAGAACAC--AGCACTAATATATATGTTATAGAA----TA--TGTTCATCATTCAAAGCAAT-AAAAATTTCTGC-ACATTTATT-TCT--T--AT-G-CATCAAG----TTACAAGGTTTATCTTTCCAC-AAAAAAATGT----TCACA-G---TT------GA-GCAAAAAATTAATTT--AAATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CAT--TCATTCCT--ATGTAA-TGTTAGA-ATAT-CTACCAACTCTA-ATCATTA--AT-TTCTGAGCA-AAA------TGCGTAATT----TACAG-AAAT-AGAATCTATATATTT--CAATT--ATAATAGTTCTAAGT-AATATGAATT-TGGACC-AACCTTTAGGGAAGAAAAGGTCACCAAGA-TATGTA--TTTTTTTTTTTACATTATTTTATGAATTGG
gi|10 : AAATTGAGA-AATTGCCTG-C-TGTGTATGG--TAAGAATAGC-A-------TAAGA--AAC--TGGTGAACGGAAA-GAAAG-T-T-ACAG--AAA--ATTTCACGAGAAAAAAGCCTCATACATGTATATCATAGGAAAAAA--GTCGTAGG-AAAAAG------TCACAGG----AAAATCCC-TAATACT-------
gi|11 : a-G-AGG-ATAA----CA--------C-ATAC----------------------AAGT--G--TATATAT-------AT-------TTTGG-CAAAAA--GAAAAG----AGAAGTC---A------TTAAA--------T-A--------GCATATATTGGG---A----AAT--ATAAA---TTTCC--------C------------------------------------------------------------AAAT---A-----------------G--AT-TT--AAAAGTGATGG-TTCTTT-AGAACAcgatgcatttaatagctagtacgtagtacgacagtg
gi|12 : --------------G-GG-GCA--A-CAT-G-AGA-ATAACATGCA--------C-ATAC----------------------AGGT--G--TATACAT-------AA-------ATTAT-A--TAA--G----G----AGAAGTG---A------TTTCATATAGGCCT-A--------GCACAGAGTTAC---A----ACA--ACAGA----TTCG--------Catgtattaaataaatacatatctatgtacag
gi|13 : TTATTTGTTCCAA-TCAA-GGGCTC--TC-AAGCGAGCCTCTCAAG-GG-GCA--AACAT-G-AG----AA----CA--------C-A-AC----------------------ATGT--A--TGTACGT-------t
gi|14 : GA---TTACA--------TG------------GTAT-------AT----A-------------------T-TGGT--AAAGAT---GATTATCCCA--ATTA--G--AT-TT--AAAATTAATGG-ATC--TCAGAACAC--gcg
gi|15 : tTATTTTATTT--T---A-TAAA-GCATCC--TC-A--------------AAGG-GCA--A-CAT-G-ATCTAGAA----CA--------C-ATAC----------------------AAGT--A--TATt
gi|16 : -ACAT-ATTTTATTT--TCCTA-TCAA-GGGCCC--TCGA--------------G-GG-ACA--A-CAT-G-----ATAA----CA--------C-ATAC----------------------AAGT--
gi|17 : -GG-GCA--A-CAG-G-AGA-ACAAA---TA--------C-TTGT----------------------AAGT--G--TATACAT-------AT-------ATTAG-C--AAAATGAAAAG----
gi|2 : TTGGTAAA-TCAAAAATATAGTATTC-TAATAAAATCTTAGTGGACAGAAAATGAGATAATTTCCTGGCCTGTGTTTGA--CATGAATAGC-AGCTACTATAGGAGTAG---TGGT-AATGGAAAAGAAAGGT-CTATAAGGAAACAGAATCACGAGAAAAAAGTCTCAT-----TATATCAT--TTATGAA--G-----GG-AAAAAGTCTTAATCACAAG--AAAAAATTCCGTGATAGTACTAGTAACTAGAACAAGAGAGACA--GTGTTATTTC-TCCAA-TC-A-GTGCTC--TC-GCAGTAC--------G-GA-GCA--A-GAT-G-AGA-ATAG----AAGATTGGGGC-ATAC----------------------AAGTCCGATTACACATTCTATTAAT-------ATCAGAC--AAA--GAAAAG----AG-AGTGTATA------TTACA--------T-A--------GCACAGAGTTGCAATA----ACT--ACAAACTGTTTTGGGCTGTAACGGTTGGTACAAATGTACTGATATGAT----A------------------ATATGTTACAAAAATAAGAAATTTCCAATCATTA--GTAAT-TC--AAAATTGATGC-CTC-TTCAGAAC-C--AGC----ATAT---TATTATA--A----TTCATCTTCATCGTTCAATGCAAT-AAAA--TCCT-C-ACATTTTTTGTTC--T--AT-G-GATCA
gi|3 : ttcaaatttggcattatggagcattttacagatgtcgcacctctgagata-A--------------G-GG-GCA--A-CTT-G-AGA-ATAA----TA--------T-ATAC----------------------AATT--G--TATACAA-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGAG---A------TTATACATA----T-A--------GCACAGAGTTAC---ATGCAACT--ACAGA---AT-CG--------C------------TGTAC-------AT----GGTCAGTTGCATATCATATAT-TGTT--AAAAAT---AAATTTCCAG--ATTA--G--AT-TT--ATAATTGATGG-CTCTT-CAGAACAC--AAC----ATATATA---TATA--AATTTT---TGTTCATCATTCAATGTAAT-AAAA--TTCTGC-ACA-TTTTT-TTC--T--ATGG-CATCAAG----T-A-AAGGTTT-TCTTTCTGC-AATTAAATTT----TCACA-T---TT------GA-TCAAAAAATGAATTT--T--GCTCCT-AA-TGAACCAATGTTGCATTTGTTA---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAATGAAATTGTGTAATTTGTATACAT-ATAT-AG-ATCT
gi|4 : caTATTTTATTT--TCCAA-TCAA-GGGCTC--TC-AA-------------G-GG-GCA--A-CAT-G-AAA-ACAA----CA--------C-ATATATACATGTACATGCACATGTGTAAGT--G--TATACAT-------G--------GTC-G-C--AAA--GAAAAGCTGAAGAAGTG---AAGCAAATTATA--------C-AAAATCACTGTACATGGT--C---A----GTT--ACATA---TAT-A--------CA-----------TGTA--------GT----A-----------------------TT--AAAGAT---AAATTTCTCA--ATTA--T--AT-TT--AAAATTGATGG-CTCTTT---AAC-CGGAGCA---ATAAAT---TT----------T---TGTTCATCATTCAGTGCAGT-AAAA--TTCTGC-ACATTGTTT-TTC--T--AT-GACATCAAGTAAAT-A-AAGGTTA-TGTTTCAGC-AATAAAATTTGAAATCATA-TATATTTAACCGGA-GC--AAGTTGCATTT--G------TT-A---------------------------------------CAAA-TA-CGT--TCATGTCT--A-GTAACTG-TAGA-ATAT-CTACAAAC-----------------TTGTGAGCAGAAA------TGCGTAATT----TACAA-ATATGAAGATCTTTAAAATTGAA-ATT--GTAACtctgaaattgaaatttttaacttcatcaagataattttcaaaaccaaagtgctccttaagtttaatt
gi|5 : TATTTTATTT--TCCAA-TCAA-GGGCCC--TC-AA-------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAATT---A------TTACA--------C-A--------GCACAGAGTTAC---A----ACT--ACAGA----ATCG--------C------------TGCAC-------ATGATCA------------------GT-TGTT--AAAAAT---GAATTTCCCA--ATTA--G--AT-TT--AAAATTAATGG-TTC-TTCAGAACAC--AACATAGATATAAAT-TT----------T---TGTTCATCATTCATTGCAAT-AAAA--TTCTGC-ACATTTTTT-TTT--TAGATGG-CATCAAA------A-AAAGTTT-TCTTTCCGC-AATAAAGTTT----TCACA-T---GT------GA--TAAAAAA-------------------AAATG-------------------------------------AA-TA-TG------TTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATCA--AT-TTGTGAGCAGAGA------TGCGTAATT----TACAT-ATAC-Attcatcacgtatctaaaaccaatgt
gi|6 : AAAAT------TTTTCCC--ATTATTG--AT-TTTTAAAAT-GATGGGCTCTTTCAGAACAC--AG-----ATATATATATTATA--A----A---ATTTCATCATTCAAAGCAATTAAAA--TTCTGCCACATTTATT-TTCCTT--AT-G-CATCAAG----T-ATAAGGTTTATCTTTCCAC-AAAAAAAATT----TCACAGT---TT------GAAGCAAAAAATTAATT---A--TCTCTTCAAGTGAA-CAA-------------G---------------CAAA-TAGCAT--TCATTCCT--ATGTAA-TGTTAGA-ATATTCTACCAACTT-A-ATCATTACCATCTTCTGAGCAGAAA------TGCGTAATT----TTAAC-AAAA-AGAATCTATATATTT--C-ATTTGAT-ATAG-TCTAAGTCAATATGAATT-TGGACCTAACC-TTAGGGAAG-AAAGGTCACCAAGAGTAT-TATTTTTTTTTTTTTACATT-TTTTATGAATTGGtcttctgaaattgaaccttttttaacttatcaagta
gi|7 : aagCAAACGTTGGTAAA-TCAAAAA-AAAA-ATTCATAAT----GCTTAGTGGACCAAAAT--AGA-AATCGCC--GC-TGTGTTTGAAATATGAATATCCA-------TAAGA--AAGATTAGT-AAATGGAA-GAAAG-T-C-ACAGG-AAA--AAATCACGAGAAAAAAGTCCCAT----ATATAT-AT--GAAAAAAACGTCGTAGGAAAAAAG------TCACAAGAAAAAAAATTCC---AGATT-------GTTAGAACAAAGAA-ACA-TATTTGATTT--TCCAATTCAAGGGGCCCCATC-A--------------G-GGCGCAAGA-AAT-GAAGA-AT-A----CA--------CGATAC----------------------AAGT--G--TATACAT-------ATTACAATCATCAG-C--
gi|8 : ttcacttttcatatatggggagacgtcatatacatgtacatctAGA-ACAT-ATTTTATTT--TCCAA-TAAA-GGGC-----------------------------A--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AGGT--G--TGTACAT-------AT-------ATCAG-C--AAA--GAAAAG----ATAAGCG---A------TTACA--------T-A--------ACACAGAGTTAC---A----ACT--ACAAA---GTTTG--------C------------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTTCCA--ATTA--G--AT-TT--AAAATTGATGG-CTC-TTCAGAACAC--AGC----ATATATATGT-----------T---TGTCCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-GACATCAAG----T-A-AAGGTTT-TCTTTCCAC-AATAAAATGG----TCACA-T---TT------GA-GCAAAAATTGAATTTA-A--TCTCTT-AA-TGAA-CCA-------------G---------------CA
gi|9 : --AT-G-CTTCAA-------A-AAGTTTT-TCTTTCCACCAATGAAATTT----TCACA-T---TC------GA-GCAACA--TGAATTTCCA--TTTCTC-AAATGAA-CCA-------------GAGTTGTATTCTGTTACAAAATC-CGTGTTCATTTCTTAA-GTAAATGTTAGAGATAT--TACCAACTTTACATAATTA--AT-TTGTTAGCAGAA-------TGCGTAATT----TGTAACAAAT-AGA--TTATATATTT--C-TCT--ATAACAAT---------ATATGAAGTGCGCAT-TGAC--TTAGGGTAGAAA--GTCAC-AAGA--ATGTATTTT-------TTACATTATATCATGATTTGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 2222222 2222 1 111 1 11 333333333333333333333 1 1 11111 11 11 44444 111 11 1 222222 222 333333333333333 11 11 33333333333333 11111111 2222222222222222222222 1111111111111111 111111 3333333333333333333 1111 000000000000000000000000000000000000000000000000000000000000000000000 1111 1 3333 4444444444444444444 1 1 22222222 1 1111 11111 111111 88888888888888888888888888888888888888888888888888888 1111 1 111111 1111 2222 11 222222222 11 11 22 22
lowQualScore : 77 3 2222222 7 8888 3 0 000 0 44 33 1 444444444444444444444 0 0 0 55555 11 33 1 2 00000 2 777 33 3 0 3 888888 000 999999999999999 7 6 1 0 8 66 00 4 4 0 66 4 99999999999999 3 3 44 3 3 3 3 9999 11111111 3 7777777777777777777777 44 44 5555555555555555 4 55 66 9999 888 444444 7777777777777777777 0 888 0000 66 888888888888888888888888888888888888888888888888888888888888888888888 66 0000 66 66 66 4 66 4 2 1 1 66 5555 6666666666666666666 5 77 5 5 77 66 0 0 11111111 1 5 2222 00000 666666 66 22 0 22222222222222222222222222222222222222222222222222222 6 6 99 3333 3 6 6 999 99 6 999999 4444 77 1 6 44 0000 33 3 000000000 44 44 00 7 7 6 00 6 7 7 7
lowQualScore : .. . ....... . .... . . ... . .. .. . ..................... . . . ..... .. .. . . ..... . ... .. . . . ...... ... ............... . . . . . .. .. . . . .. . .............. . . .. . . . . .... ........ . ...................... .. .. ................ . .. .. .... ... ...... ................... . ... .... .. ..................................................................... .. .... .. .. .. . .. . . . . .. .... ................... . .. . . .. .. . . ........ . . .... ..... ...... .. .. . ..................................................... . . .. .... . . . ... .. . ...... .... .. . . .. .... .. . ......... .. .. .. . . . .. . . . .
lowQualScore : 55 3 0000000 3 3333 2 0 000 0 22 88 0 222222222222222222222 0 2 0 00000 22 88 2 5 22222 5 000 88 2 0 2 888888 888 555555555555555 3 7 0 2 0 99 66 4 4 9 11 0 11111111111111 3 3 66 3 1 1 1 6666 22222222 1 3333333333333333333333 22 66 8888888888888888 0 55 11 4444 888 444444 6666666666666666666 1 888 6666 99 333333333333333333333333333333333333333333333333333333333333333333333 99 4444 11 11 11 4 11 4 8 1 9 99 4444 9999999999999999999 7 99 7 7 99 99 0 0 77777777 4 7 1111 11111 444444 44 00 7 00000000000000000000000000000000000000000000000000000 7 7 22 5555 3 7 7 555 22 7 222222 2222 77 0 7 66 0000 88 2 777777777 00 00 00 3 3 7 77 7 3 3 3
consensus : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATGTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
Reference ( family-5499 ) : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATGTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
gi|1 : CAAA---TGGTAAAATCCAAAA--TAAT-TTCATTAT----TTTTAGTGGACCGAAATTGAGA-AATTGCCTAAC-TGTGTG-GA--CAAGAATAGC-A-------TG-GA--AA---TGGT-AACGGAAA-GAAAG-TTC-ACAGGGGAA--AAGTCACGAGAATAAAGCCT-AT-----TATATCA---GAAAAAA--GTCGTAGG-AAAA-G------TCACAAG--GAATTTTTCC---AAAGT-------AT----A-AACATA-ACATTATTTTATTT--TCCAA-TCAA-GGGCC------A--------------G-GG-G-A--A-CATTG-AGA-ATAA----CA--------C-A-AC----------------------AAG---G--TATACAT-------AT-------ATCAG-C--AAA--GAAGAG----AGAAGTG---A------TTACA--------TTA--------GCA---AGTTAC---A----ACTTAACAGA---TTTTG--------TG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---TAAATTCCCA--ATTA--G--ATCTT--AAAATTGATGG-CTCTTTCAGAACAC--AGCACTAATATATATGTTATAGAA----TA--TGTTCATCATTCAAAGCAAT-AAAAATTTCTGC-ACATTTATT-TCT--T--AT-G-CATCAAG----TTACAAGGTTTATCTTTCCAC-AAAAAAATGT----TCACA-G---TT------GA-GCAAAAAATTAATTT--AAATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CAT--TCATTCCT--ATGTAA-TGTTAGA-ATAT-CTACCAACTCTA-ATCATTA--AT-TTCTGAGCA-AAA------TGCGTAATT----TACAG-AAAT-AGAATCTATATATTT--CAATT--ATAATAGTTCTAAGT-AATATGAATT-TGGACC-AACCTTTAGGGAAGAAAAGGTCACCAAGA-TATGTA--TTTTTTTTTTTACATTATTTTATGAATTGG
gi|10 : AAATTGAGA-AATTGCCTG-C-TGTGTATGG--TAAGAATAGC-A-------TAAGA--AAC--TGGTGAACGGAAA-GAAAG-T-T-ACAG--AAA--ATTTCACGAGAAAAAAGCCTCATACATGTATATCATAGGAAAAAA--GTCGTAGG-AAAAAG------TCACAGG----AAAATCCC-TAATACT-------
gi|11 : a-G-AGG-ATAA----CA--------C-ATAC----------------------AAGT--G--TATATAT-------AT-------TTTGG-CAAAAA--GAAAAG----AGAAGTC---A------TTAAA--------T-A--------GCATATATTGGG---A----AAT--ATAAA---TTTCC--------C------------------------------------------------------------AAAT---A-----------------G--AT-TT--AAAAGTGATGG-TTCTTT-AGAACAcgatgcatttaatagctagtacgtagtacgacagtg
gi|12 : --------------G-GG-GCA--A-CAT-G-AGA-ATAACATGCA--------C-ATAC----------------------AGGT--G--TATACAT-------AA-------ATTAT-A--TAA--G----G----AGAAGTG---A------TTTCATATAGGCCT-A--------GCACAGAGTTAC---A----ACA--ACAGA----TTCG--------Catgtattaaataaatacatatctatgtacag
gi|13 : TTATTTGTTCCAA-TCAA-GGGCTC--TC-AAGCGAGCCTCTCAAG-GG-GCA--AACAT-G-AG----AA----CA--------C-A-AC----------------------ATGT--A--TGTACGT-------t
gi|14 : GA---TTACA--------TG------------GTAT-------AT----A-------------------T-TGGT--AAAGAT---GATTATCCCA--ATTA--G--AT-TT--AAAATTAATGG-ATC--TCAGAACAC--gcg
gi|15 : tTATTTTATTT--T---A-TAAA-GCATCC--TC-A--------------AAGG-GCA--A-CAT-G-ATCTAGAA----CA--------C-ATAC----------------------AAGT--A--TATt
gi|16 : -ACAT-ATTTTATTT--TCCTA-TCAA-GGGCCC--TCGA--------------G-GG-ACA--A-CAT-G-----ATAA----CA--------C-ATAC----------------------AAGT--
gi|17 : -GG-GCA--A-CAG-G-AGA-ACAAA---TA--------C-TTGT----------------------AAGT--G--TATACAT-------AT-------ATTAG-C--AAAATGAAAAG----
gi|2 : TTGGTAAA-TCAAAAATATAGTATTC-TAATAAAATCTTAGTGGACAGAAAATGAGATAATTTCCTGGCCTGTGTTTGA--CATGAATAGC-AGCTACTATAGGAGTAG---TGGT-AATGGAAAAGAAAGGT-CTATAAGGAAACAGAATCACGAGAAAAAAGTCTCAT-----TATATCAT--TTATGAA--G-----GG-AAAAAGTCTTAATCACAAG--AAAAAATTCCGTGATAGTACTAGTAACTAGAACAAGAGAGACA--GTGTTATTTC-TCCAA-TC-A-GTGCTC--TC-GCAGTAC--------G-GA-GCA--A-GAT-G-AGA-ATAG----AAGATTGGGGC-ATAC----------------------AAGTCCGATTACACATTCTATTAAT-------ATCAGAC--AAA--GAAAAG----AG-AGTGTATA------TTACA--------T-A--------GCACAGAGTTGCAATA----ACT--ACAAACTGTTTTGGGCTGTAACGGTTGGTACAAATGTACTGATATGAT----A------------------ATATGTTACAAAAATAAGAAATTTCCAATCATTA--GTAAT-TC--AAAATTGATGC-CTC-TTCAGAAC-C--AGC----ATAT---TATTATA--A----TTCATCTTCATCGTTCAATGCAAT-AAAA--TCCT-C-ACATTTTTTGTTC--T--AT-G-GATCA
gi|3 : ttcaaatttggcattatggagcattttacagatgtcgcacctctgagata-A--------------G-GG-GCA--A-CTT-G-AGA-ATAA----TA--------T-ATAC----------------------AATT--G--TATACAA-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGAG---A------TTATACATA----T-A--------GCACAGAGTTAC---ATGCAACT--ACAGA---AT-CG--------C------------TGTAC-------AT----GGTCAGTTGCATATCATATAT-TGTT--AAAAAT---AAATTTCCAG--ATTA--G--AT-TT--ATAATTGATGG-CTCTT-CAGAACAC--AAC----ATATATA---TATA--AATTTT---TGTTCATCATTCAATGTAAT-AAAA--TTCTGC-ACA-TTTTT-TTC--T--ATGG-CATCAAG----T-A-AAGGTTT-TCTTTCTGC-AATTAAATTT----TCACA-T---TT------GA-TCAAAAAATGAATTT--T--GCTCCT-AA-TGAACCAATGTTGCATTTGTTA---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAATGAAATTGTGTAATTTGTATACAT-ATAT-AG-ATCT
gi|4 : caTATTTTATTT--TCCAA-TCAA-GGGCTC--TC-AA-------------G-GG-GCA--A-CAT-G-AAA-ACAA----CA--------C-ATATATACATGTACATGCACATGTGTAAGT--G--TATACAT-------G--------GTC-G-C--AAA--GAAAAGCTGAAGAAGTG---AAGCAAATTATA--------C-AAAATCACTGTACATGGT--C---A----GTT--ACATA---TAT-A--------CA-----------TGTA--------GT----A-----------------------TT--AAAGAT---AAATTTCTCA--ATTA--T--AT-TT--AAAATTGATGG-CTCTTT---AAC-CGGAGCA---ATAAAT---TT----------T---TGTTCATCATTCAGTGCAGT-AAAA--TTCTGC-ACATTGTTT-TTC--T--AT-GACATCAAGTAAAT-A-AAGGTTA-TGTTTCAGC-AATAAAATTTGAAATCATA-TATATTTAACCGGA-GC--AAGTTGCATTT--G------TT-A---------------------------------------CAAA-TA-CGT--TCATGTCT--A-GTAACTG-TAGA-ATAT-CTACAAAC-----------------TTGTGAGCAGAAA------TGCGTAATT----TACAA-ATATGAAGATCTTTAAAATTGAA-ATT--GTAACtctgaaattgaaatttttaacttcatcaagataattttcaaaaccaaagtgctccttaagtttaatt
gi|5 : TATTTTATTT--TCCAA-TCAA-GGGCCC--TC-AA-------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAATT---A------TTACA--------C-A--------GCACAGAGTTAC---A----ACT--ACAGA----ATCG--------C------------TGCAC-------ATGATCA------------------GT-TGTT--AAAAAT---GAATTTCCCA--ATTA--G--AT-TT--AAAATTAATGG-TTC-TTCAGAACAC--AACATAGATATAAAT-TT----------T---TGTTCATCATTCATTGCAAT-AAAA--TTCTGC-ACATTTTTT-TTT--TAGATGG-CATCAAA------A-AAAGTTT-TCTTTCCGC-AATAAAGTTT----TCACA-T---GT------GA--TAAAAAA-------------------AAATG-------------------------------------AA-TA-TG------TTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATCA--AT-TTGTGAGCAGAGA------TGCGTAATT----TACAT-ATAC-Attcatcacgtatctaaaaccaatgt
gi|6 : AAAAT------TTTTCCC--ATTATTG--AT-TTTTAAAAT-GATGGGCTCTTTCAGAACAC--AG-----ATATATATATTATA--A----A---ATTTCATCATTCAAAGCAATTAAAA--TTCTGCCACATTTATT-TTCCTT--AT-G-CATCAAG----T-ATAAGGTTTATCTTTCCAC-AAAAAAAATT----TCACAGT---TT------GAAGCAAAAAATTAATT---A--TCTCTTCAAGTGAA-CAA-------------G---------------CAAA-TAGCAT--TCATTCCT--ATGTAA-TGTTAGA-ATATTCTACCAACTT-A-ATCATTACCATCTTCTGAGCAGAAA------TGCGTAATT----TTAAC-AAAA-AGAATCTATATATTT--C-ATTTGAT-ATAG-TCTAAGTCAATATGAATT-TGGACCTAACC-TTAGGGAAG-AAAGGTCACCAAGAGTAT-TATTTTTTTTTTTTTACATT-TTTTATGAATTGGtcttctgaaattgaaccttttttaacttatcaagta
gi|7 : aagCAAACGTTGGTAAA-TCAAAAA-AAAA-ATTCATAAT----GCTTAGTGGACCAAAAT--AGA-AATCGCC--GC-TGTGTTTGAAATATGAATATCCA-------TAAGA--AAGATTAGT-AAATGGAA-GAAAG-T-C-ACAGG-AAA--AAATCACGAGAAAAAAGTCCCAT----ATATAT-AT--GAAAAAAACGTCGTAGGAAAAAAG------TCACAAGAAAAAAAATTCC---AGATT-------GTTAGAACAAAGAA-ACA-TATTTGATTT--TCCAATTCAAGGGGCCCCATC-A--------------G-GGCGCAAGA-AAT-GAAGA-AT-A----CA--------CGATAC----------------------AAGT--G--TATACAT-------ATTACAATCATCAG-C--
gi|8 : ttcacttttcatatatggggagacgtcatatacatgtacatctAGA-ACAT-ATTTTATTT--TCCAA-TAAA-GGGC-----------------------------A--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AGGT--G--TGTACAT-------AT-------ATCAG-C--AAA--GAAAAG----ATAAGCG---A------TTACA--------T-A--------ACACAGAGTTAC---A----ACT--ACAAA---GTTTG--------C------------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTTCCA--ATTA--G--AT-TT--AAAATTGATGG-CTC-TTCAGAACAC--AGC----ATATATATGT-----------T---TGTCCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-GACATCAAG----T-A-AAGGTTT-TCTTTCCAC-AATAAAATGG----TCACA-T---TT------GA-GCAAAAATTGAATTTA-A--TCTCTT-AA-TGAA-CCA-------------G---------------CA
gi|9 : --AT-G-CTTCAA-------A-AAGTTTT-TCTTTCCACCAATGAAATTT----TCACA-T---TC------GA-GCAACA--TGAATTTCCA--TTTCTC-AAATGAA-CCA-------------GAGTTGTATTCTGTTACAAAATC-CGTGTTCATTTCTTAA-GTAAATGTTAGAGATAT--TACCAACTTTACATAATTA--AT-TTGTTAGCAGAA-------TGCGTAATT----TGTAACAAAT-AGA--TTATATATTT--C-TCT--ATAACAAT---------ATATGAAGTGCGCAT-TGAC--TTAGGGTAGAAA--GTCAC-AAGA--ATGTATTTT-------TTACATTATATCATGATTTGG
blockSeqs : CG . TATAGTA A AAAA T T TGG C AT AA A AGCTACTATAGGAGTAG G A GTCT GG CA T C ACATG C TAG AC T A A TCTTAA AAA GTGATAGTACTAGTA T C G G T GT T G CA G AGCGAGCCTCTCAA A C AG A . A T CATG GATTGGGG G ATACATGTACATGCACATGTGT CC AT TCTATTAAT A AA AT CTGA TAT AGCAAA TATAGGCCTA AAT TGCA . CTGTTTTGGGCTGTAACGGTTGGTACAAATGTACTGATATGATAATA AC AAGA TC TT TA . TT G T C A GG ATAG TATTATAATTCA T . C G CT AG G A TAAATA A C GAAA TATA TAACCG AG AA TCCATTTCTCAAATGAACCAGAGTTGTATTCTGTTA A G GT TAA C G T TAC CC C TGAAAT TGTA AC T G GA GAA TG A TCTAAGTC GC CT C A A C GT G T T A
blockSeqs : . AAAAA . . T . TG . TT . T CATAAGAAAGAT . . TT G . A C A C T . T . A . A TAATACT T C A . T C . . . . CAGTAC . . . . . . . A . . . . . ATTACAATC . . . . . . CAAAATCACT . . . ATCGCTGTACATGGTCAGTTGCATATCATATAT . A . . . . . . T C A . A ATATAAATTTT . . . . . . G A TAT . . . GT . T GT TTGCTCCTAATGAACCAATGTTGCATTTGTTA . . . AT A . . CA . . . . T T . AA C . A T T T . . . . . . T . .
blockSeqs : . . G . TT . T ATAAGAAAC . . TC . . A C . . T . . . A . . AGATT . T . . . . . A . . . . . . . . . . . . . AT . . . . . . CATATA . . . ATCGCTGCACATGATCAGT . G . . . . . . T C A . . ATATTATAAA . . . . . . . . TA . . . T . G AA ATCTCTTCAAGTGAACAAG . . . A . . . CA . . . . A T . A C . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . AA . . . . . . TA . . . GTTTGCTGTACGTAAT . A . . . . . . T C A . . ATTTT . . . . . . . . TA . . . T . G AA TAATCTCTTAATGAACCAG . . . A . . . A . . . . T A . A
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . . . . TA . . . TTACATGGTATATAT . A . . . . . . . C A . . ATGTT . . . . . . . . A . . . T . G AT TGTTA . . . A . . . . . . . . C A .
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . . . . CA . . . TATACATGTAGTA . G . . . . . . . C A . . TTT . . . . . . . . A . . . T . . . AAATG
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . . . . TA . . . TTTCCC . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : T* TA***************** ** **** ATTTT************** ** TA****** A***
originalCons : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACATTATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGCA---ATATATATGTTATA--A----T---TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
finalCons : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGG-AAAAAG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACAT-ATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACATA-----------------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AGC----ATATATATTTT--------------TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAGTA------AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCTA---GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 2222222 2222 1 111 1 11 333333333333333333333 1 1 11111 11 11 44444 111 11 333333333 222 333333333333333 11 33333333333333 11111111 2222222222222222222222 1111111111111111 111111 3333333333333333333 1111 000000000000000000000000000000000000000000000000000000000000000000000 1111 1 1111111 555555555555555555555 1 1 22222222 1 1111 11111 111111 88888888888888888888888888888888888888888888888888888 1111 1 111111 1111 2222 11 222222222 11 11 22 22
lowQualScore : 77 3 2222222 7 8888 3 0 000 0 44 33 1 444444444444444444444 0 0 0 55555 11 33 1 2 00000 2 777 33 3 222222222 000 999999999999999 7 6 1 0 8 5 00 4 4 0 66 4 99999999999999 3 3 44 3 3 3 3 9999 11111111 3 7777777777777777777777 44 44 5555555555555555 4 55 66 9999 888 444444 7777777777777777777 0 888 0000 66 888888888888888888888888888888888888888888888888888888888888888888888 66 0000 66 66 66 4 66 4 2 1 1 66 5 8888888 77 222222222222222222222 0 5 77 5 5 77 66 0 0 11111111 1 5 2222 00000 666666 66 22 0 22222222222222222222222222222222222222222222222222222 6 6 99 3333 3 6 6 999 99 6 999999 4444 77 1 6 44 0000 33 3 000000000 44 44 00 7 7 6 00 6 7 7 7
lowQualScore : .. . ....... . .... . . ... . .. .. . ..................... . . . ..... .. .. . . ..... . ... .. . ......... ... ............... . . . . . . .. . . . .. . .............. . . .. . . . . .... ........ . ...................... .. .. ................ . .. .. .... ... ...... ................... . ... .... .. ..................................................................... .. .... .. .. .. . .. . . . . .. . ....... .. ..................... . . .. . . .. .. . . ........ . . .... ..... ...... .. .. . ..................................................... . . .. .... . . . ... .. . ...... .... .. . . .. .... .. . ......... .. .. .. . . . .. . . . .
lowQualScore : 55 3 0000000 3 3333 2 0 000 0 22 88 0 222222222222222222222 0 2 0 00000 22 88 2 5 22222 5 000 88 2 000000000 888 555555555555555 3 7 0 2 0 0 66 4 4 9 11 0 11111111111111 3 3 66 3 1 1 1 6666 22222222 1 3333333333333333333333 22 66 8888888888888888 0 55 11 4444 888 444444 6666666666666666666 1 888 6666 99 333333333333333333333333333333333333333333333333333333333333333333333 99 4444 11 11 11 4 11 4 8 1 9 99 7 0000000 99 999999999999999999999 7 7 99 7 7 99 99 0 0 77777777 4 7 1111 11111 444444 44 00 7 00000000000000000000000000000000000000000000000000000 7 7 22 5555 3 7 7 555 22 7 222222 2222 77 0 7 66 0000 88 2 777777777 00 00 00 3 3 7 77 7 3 3 3
consensus : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGGAAAA-AG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACAT-ATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AG-CA----T--ATAT--AT------T----TT--------TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
Reference ( family-5499 ) : CAAACGTTGGTAAA-TCAAAAA-ATAATATTCATAAT----TCTTAGTGGACCGAAATTGAGA-AATTGCCTGGC-TGTGTNTGA--CANGAATAGC-A-------TAAGA--AA---TGGT-AACGGAAA-GAAAG-T-C-ACAGGGAAA--AAATCACGAGAAAAAAGCCTCAT----GTATATCAT--GAAAAAA--GTCGTAGGAAAA-AG------TCACAAG--AAAAAATTCC-TGANANT-------ATTAGAACAANAGA-ACAT-ATTTTATTT--TCCAA-TCAA-GGGCCC--TC-A--------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGTG---A------TTACA--------T-A--------GCACAGAGTTAC---A----ACT--ACAGA---TTTCG--------CG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTCCCA--ATTA--G--AT-TT--AAAATTGATGG-CTCTTTCAGAACAC--AG-CA----T--ATAT--AT------T----TT--------TGTTCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-G-CATCAAG----T-A-AAGGTTT-TCTTTCCGC-AATAAAATTT----TCACA-T---TT------GA-GCAAAAAATGAATTT--A--TCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAA------TGCGTAATT----TACAN-ANAT-AGAATCTATATATTT--C-ATT--ATAACAGTTCTAAGT-AATATGAATT-CGGACCTAACC-TTAGGGAAGAAAAGGTCACCAAGA-TATGTATTTTTTTTTTTTTACATTATTTTATGAATTGG
gi|1 : CAAA---TGGTAAAATCCAAAA--TAAT-TTCATTAT----TTTTAGTGGACCGAAATTGAGA-AATTGCCTAAC-TGTGTG-GA--CAAGAATAGC-A-------TG-GA--AA---TGGT-AACGGAAA-GAAAG-TTC-ACAGGGGAA--AAGTCACGAGAATAAAGCCT-AT-----TATATCA---GAAAAAA--GTCGTAGGAAAA--G------TCACAAG--GAATTTTTCC---AAAGT-------AT----A-AACATA-ACATTATTTTATTT--TCCAA-TCAA-GGGCC------A--------------G-GG-G-A--A-CATTG-AGA-ATAA----CA--------C-A-AC----------------------AAG---G--TATACAT-------AT-------ATCAG-C--AAA--GAAGAG----AGAAGTG---A------TTACA--------TTA--------GCA---AGTTAC---A----ACTTAACAGA---TTTTG--------TG-----------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---TAAATTCCCA--ATTA--G--ATCTT--AAAATTGATGG-CTCTTTCAGAACAC--AG-CACTAAT--ATAT--AT------G----TTATAGAATATGTTCATCATTCAAAGCAAT-AAAAATTTCTGC-ACATTTATT-TCT--T--AT-G-CATCAAG----TTACAAGGTTTATCTTTCCAC-AAAAAAATGT----TCACA-G---TT------GA-GCAAAAAATTAATTT--AAATCTCTT-AAGTGAA-CAA-------------G---------------CAAA-TA-CAT--TCATTCCT--ATGTAA-TGTTAGA-ATAT-CTACCAACTCTA-ATCATTA--AT-TTCTGAGCA-AAA------TGCGTAATT----TACAG-AAAT-AGAATCTATATATTT--CAATT--ATAATAGTTCTAAGT-AATATGAATT-TGGACC-AACCTTTAGGGAAGAAAAGGTCACCAAGA-TATGTA--TTTTTTTTTTTACATTATTTTATGAATTGG
gi|10 : AAATTGAGA-AATTGCCTG-C-TGTGTATGG--TAAGAATAGC-A-------TAAGA--AAC--TGGTGAACGGAAA-GAAAG-T-T-ACAG--AAA--ATTTCACGAGAAAAAAGCCTCATACATGTATATCATAGGAAAAAA--GTCGTAGGAAAA-AG------TCACAGG----AAAATCCC-TAATACT-------
gi|11 : a-G-AGG-ATAA----CA--------C-ATAC----------------------AAGT--G--TATATAT-------AT-------TTTGG-CAAAAA--GAAAAG----AGAAGTC---A------TTAAA--------T-A--------GCATATATTGGG---A----AAT--ATAAA---TTTCC--------C------------------------------------------------------------AAAT---A-----------------G--AT-TT--AAAAGTGATGG-TTCTTT-AGAACAcgatgcatttaatagctagtacgtagtacgacagtg
gi|12 : --------------G-GG-GCA--A-CAT-G-AGA-ATAACATGCA--------C-ATAC----------------------AGGT--G--TATACAT-------AA-------ATTAT-A--TAA--G----G----AGAAGTG---A------TTTCATATAGGCCT-A--------GCACAGAGTTAC---A----ACA--ACAGA----TTCG--------Catgtattaaataaatacatatctatgtacag
gi|13 : TTATTTGTTCCAA-TCAA-GGGCTC--TC-AAGCGAGCCTCTCAAG-GG-GCA--AACAT-G-AG----AA----CA--------C-A-AC----------------------ATGT--A--TGTACGT-------t
gi|14 : GA---TTACA--------TG------------GTAT-------AT----A-------------------T-TGGT--AAAGAT---GATTATCCCA--ATTA--G--AT-TT--AAAATTAATGG-ATC--TCAGAACAC--gcg
gi|15 : tT-ATTTTATTT--T---A-TAAA-GCATCC--TC-A--------------AAGG-GCA--A-CAT-G-ATCTAGAA----CA--------C-ATAC----------------------AAGT--A--TATt
gi|16 : -ACAT-ATTTTATTT--TCCTA-TCAA-GGGCCC--TCGA--------------G-GG-ACA--A-CAT-G-----ATAA----CA--------C-ATAC----------------------AAGT--
gi|17 : -GG-GCA--A-CAG-G-AGA-ACAAA---TA--------C-TTGT----------------------AAGT--G--TATACAT-------AT-------ATTAG-C--AAAATGAAAAG----
gi|2 : TTGGTAAA-TCAAAAATATAGTATTC-TAATAAAATCTTAGTGGACAGAAAATGAGATAATTTCCTGGCCTGTGTTTGA--CATGAATAGC-AGCTACTATAGGAGTAG---TGGT-AATGGAAAAGAAAGGT-CTATAAGGAAACAGAATCACGAGAAAAAAGTCTCAT-----TATATCAT--TTATGAA--G-----GGAAAA-AGTCTTAATCACAAG--AAAAAATTCCGTGATAGTACTAGTAACTAGAACAAGAGAGACA--GTGTTATTTC-TCCAA-TC-A-GTGCTC--TC-GCAGTAC--------G-GA-GCA--A-GAT-G-AGA-ATAG----AAGATTGGGGC-ATAC----------------------AAGTCCGATTACACATTCTATTAAT-------ATCAGAC--AAA--GAAAAG----AG-AGTGTATA------TTACA--------T-A--------GCACAGAGTTGCAATA----ACT--ACAAACTGTTTTGGGCTGTAACGGTTGGTACAAATGTACTGATATGAT----A------------------ATATGTTACAAAAATAAGAAATTTCCAATCATTA--GTAAT-TC--AAAATTGATGC-CTC-TTCAGAAC-C--AG-CA----T--AT-T--AT------TATAATTCA------TCTTCATCGTTCAATGCAAT-AAAA--TCCT-C-ACATTTTTTGTTC--T--AT-G-GATCA
gi|3 : ttcaaatttggcattatggagcattttacagatgtcgcacctctgagata-A--------------G-GG-GCA--A-CTT-G-AGA-ATAA----TA--------T-ATAC----------------------AATT--G--TATACAA-------AT-------ATCAG-C--AAA--GAAAAG----AGAAGAG---A------TTATACATA----T-A--------GCACAGAGTTAC---ATGCAACT--ACAGA---AT-CG--------C------------TGTAC-------AT----GGTCAGTTGCATATCATATAT-TGTT--AAAAAT---AAATTTCCAG--ATTA--G--AT-TT--ATAATTGATGG-CTCTT-CAGAACAC--AA-CA----T--ATAT--ATATAAATT----TT--------TGTTCATCATTCAATGTAAT-AAAA--TTCTGC-ACA-TTTTT-TTC--T--ATGG-CATCAAG----T-A-AAGGTTT-TCTTTCTGC-AATTAAATTT----TCACA-T---TT------GA-TCAAAAAATGAATTT--T--GCTCCT-AA-TGAACCAATGTTGCATTTGTTA---------------CAAA-TA-CGT--TCATTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATTA--AT-TTGTGAGCAGAAATGAAATTGTGTAATTTGTATACAT-ATAT-AG-ATCT
gi|4 : caT-ATTTTATTT--TCCAA-TCAA-GGGCTC--TC-AA-------------G-GG-GCA--A-CAT-G-AAA-ACAA----CA--------C-ATATATACATGTACATGCACATGTGTAAGT--G--TATACAT-------G--------GTC-G-C--AAA--GAAAAGCTGAAGAAGTG---AAGCAAATTATA--------C-AAAATCACTGTACATGGT--C---A----GTT--ACATA---TAT-A--------CA-----------TGTA--------GT----A-----------------------TT--AAAGAT---AAATTTCTCA--ATTA--T--AT-TT--AAAATTGATGG-CTCTTT---AAC-CGGAG-CA-------ATAA--AT------T----TT--------TGTTCATCATTCAGTGCAGT-AAAA--TTCTGC-ACATTGTTT-TTC--T--AT-GACATCAAGTAAAT-A-AAGGTTA-TGTTTCAGC-AATAAAATTTGAAATCATA-TATATTTAACCGGA-GC--AAGTTGCATTT--G------TT-A---------------------------------------CAAA-TA-CGT--TCATGTCT--A-GTAACTG-TAGA-ATAT-CTACAAAC-----------------TTGTGAGCAGAAA------TGCGTAATT----TACAA-ATATGAAGATCTTTAAAATTGAA-ATT--GTAACtctgaaattgaaatttttaacttcatcaagataattttcaaaaccaaagtgctccttaagtttaatt
gi|5 : T-ATTTTATTT--TCCAA-TCAA-GGGCCC--TC-AA-------------G-GG-GCA--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AAGT--G--TATACAT-------AT-------ATCAG-C--AAA--GAAAAG----AGAAATT---A------TTACA--------C-A--------GCACAGAGTTAC---A----ACT--ACAGA----ATCG--------C------------TGCAC-------ATGATCA------------------GT-TGTT--AAAAAT---GAATTTCCCA--ATTA--G--AT-TT--AAAATTAATGG-TTC-TTCAGAACAC--AA-CA----TAGATATAAAT------T----TT--------TGTTCATCATTCATTGCAAT-AAAA--TTCTGC-ACATTTTTT-TTT--TAGATGG-CATCAAA------A-AAAGTTT-TCTTTCCGC-AATAAAGTTT----TCACA-T---GT------GA--TAAAAAA-------------------AAATG-------------------------------------AA-TA-TG------TTCCT--A-GTAA-TGTTAGA-ATAT-CTACCAACTTCA-ATCATCA--AT-TTGTGAGCAGAGA------TGCGTAATT----TACAT-ATAC-Attcatcacgtatctaaaaccaatgt
gi|6 : AAAAT------TTTTCCC--ATTATTG--AT-TTTTAAAAT-GATGGGCTCTTTCAGAACAC--AGATA----T--ATAT--AT------T----ATAAAA----T-TTCATCATTCAAAGCAATTAAAA--TTCTGCCACATTTATT-TTCCTT--AT-G-CATCAAG----T-ATAAGGTTTATCTTTCCAC-AAAAAAAATT----TCACAGT---TT------GAAGCAAAAAATTAATT---A--TCTCTTCAAGTGAA-CAA-------------G---------------CAAA-TAGCAT--TCATTCCT--ATGTAA-TGTTAGA-ATATTCTACCAACTT-A-ATCATTACCATCTTCTGAGCAGAAA------TGCGTAATT----TTAAC-AAAA-AGAATCTATATATTT--C-ATTTGAT-ATAG-TCTAAGTCAATATGAATT-TGGACCTAACC-TTAGGGAAG-AAAGGTCACCAAGAGTAT-TATTTTTTTTTTTTTACATT-TTTTATGAATTGGtcttctgaaattgaaccttttttaacttatcaagta
gi|7 : aagCAAACGTTGGTAAA-TCAAAAA-AAAA-ATTCATAAT----GCTTAGTGGACCAAAAT--AGA-AATCGCC--GC-TGTGTTTGAAATATGAATATCCA-------TAAGA--AAGATTAGT-AAATGGAA-GAAAG-T-C-ACAGG-AAA--AAATCACGAGAAAAAAGTCCCAT----ATATAT-AT--GAAAAAAACGTCGTAGGAAAAAAG------TCACAAGAAAAAAAATTCC---AGATT-------GTTAGAACAAAGAA-ACAT-ATTTGATTT--TCCAATTCAAGGGGCCCCATC-A--------------G-GGCGCAAGA-AAT-GAAGA-AT-A----CA--------CGATAC----------------------AAGT--G--TATACAT-------ATTACAATCATCAG-C--
gi|8 : ttcacttttcatatatggggagacgtcatatacatgtacatctAGA-ACAT-ATTTTATTT--TCCAA-TAAA-GGGC-----------------------------A--A-CAT-G-AGA-ATAA----CA--------C-ATAC----------------------AGGT--G--TGTACAT-------AT-------ATCAG-C--AAA--GAAAAG----ATAAGCG---A------TTACA--------T-A--------ACACAGAGTTAC---A----ACT--ACAAA---GTTTG--------C------------TGTAC-------GT----A------------------AT-TGTT--AAAAAT---AAATTTTCCA--ATTA--G--AT-TT--AAAATTGATGG-CTC-TTCAGAACAC--AG-CA----T--ATAT--AT------G----TT--------TGTCCATCATTCAATGCAAT-AAAA--TTCTGC-ACATTTTTT-TTC--T--AT-GACATCAAG----T-A-AAGGTTT-TCTTTCCAC-AATAAAATGG----TCACA-T---TT------GA-GCAAAAATTGAATTTA-A--TCTCTT-AA-TGAA-CCA-------------G---------------CA
gi|9 : --AT-G-CTTCAA-------A-AAGTTTT-TCTTTCCACCAATGAAATTT----TCACA-T---TC------GA-GCAACA--TGAATTTCCA--TTTCTC-AAATGAA-CCA-------------GAGTTGTATTCTGTTACAAAATC-CGTGTTCATTTCTTAA-GTAAATGTTAGAGATAT--TACCAACTTTACATAATTA--AT-TTGTTAGCAGAA-------TGCGTAATT----TGTAACAAAT-AGA--TTATATATTT--C-TCT--ATAACAAT---------ATATGAAGTGCGCAT-TGAC--TTAGGGTAGAAA--GTCAC-AAGA--ATGTATTTT-------TTACATTATATCATGATTTGG