lowQualScore : 1 11 1 1111 1 1 1 1 22222 11 1 222222 1 2 333 1 1 1111 1 1 11111 1 1111 222 33333 22 11 11 1 6666666666666666666666666 3333 1111111 11 1111 111 44444444444444444444444444444 44444444444444 11 2222222 1 1 11 1 11 11 11 1 22222 11 11 1 1111 5555 11 111 11 111 222 1 1 5555555555 333333 1 2222222 1 1 222222 2222 1 1 33333333333 11 1 1 333 33333333 2222 11 6666666
lowQualScore : 0 22 3 8 2 0 2 4444 4 0 2 0 4 8 8 0 8 77777 5 88 1 666666 1 5 222 0 1 8 0 7777 6 6 5 6 66666 0 9 6 0 3 8888 3 3 3 111 5 00000 33 33 22 1 8888888888888888888888888 5 1111 5 5 77 1 77 7777777 55 2222 777 99 1 6 0 000 55555555555555555555555555555 3 00000000000000 77 4444444 5 6 5 5 5 1 4 5 5 0 3 5 11 0 3 2 11 8 1 11 44 8 9 8 8 8 3 8 0 1 55555 8 11 8 3 11 0 1 0 8888 0 1111 8 8 33 000 8 8 00 444 3 111 6 3 5 5 0 0 1111111111 2 0 666666 0 22 1111111 99 0 0 888888 1111 9 0 0 2 11 5 77777777777 3 6 66 3 1 3 0 555 6 6 0 66666666 2 9999 2 2 0 4 2 2 2 9 9 33 2 0 3333333
lowQualScore : . .. . . . . . .... . . . . . . . . . ..... . .. . ...... . . ... . . . . .... . . . . ..... . . . . . .... . . . ... . ..... .. .. .. . ......................... . .... . . .. . .. ....... .. .... ... .. . . . ... ............................. . .............. .. ....... . . . . . . . . . . . . .. . . . .. . . .. .. . . . . . . . . . ..... . .. . . .. . . . .... . .... . . .. ... . . .. ... . ... . . . . . . .......... . . ...... . .. ....... .. . . ...... .... . . . . .. . ........... . . .. . . . . ... . . . ........ . .... . . . . . . . . . .. . . .......
lowQualScore : 0 55 2 8 0 0 5 0000 5 5 2 0 5 8 8 0 0 44444 6 22 8 222222 8 0 333 8 8 0 8 0000 0 0 7 7 77777 7 5 6 1 0 0000 9 7 3 111 7 44444 55 33 00 6 9999999999999999999999999 7 0000 7 7 99 7 11 7777777 77 1111 888 22 0 7 7 000 33333333333333333333333333333 0 11111111111111 33 3333333 7 6 7 0 7 7 6 7 1 8 5 0 00 0 0 8 00 4 8 00 88 2 0 0 0 0 0 0 8 4 44444 0 00 0 0 00 8 4 6 4444 6 0000 0 0 00 000 0 0 22 000 2 222 0 0 0 0 0 8 0000000000 2 8 888888 0 55 0000000 00 0 0 888888 2222 0 0 8 2 33 0 33333333333 7 7 00 3 0 3 7 777 7 7 7 22222222 0 0000 2 5 2 5 2 5 2 5 0 88 2 2 0000000
consensus : TTTCAGAAA-AT-CAGACACCCGTAGGCATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACAAAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTGT--TGCGA-CACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAG-GCTGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGC------------------------CGCA-TTGGACGTGG-CC-C-CTGCCAGAATTC--GACATGGAGGATGA-CC----C-GGG--GG----A-T-ATT--GCGGTCTGTTTGCGTCTTGG---GCA--------------CAT------------TGCCCGAG------------CCCCCTTC-TGACTCGCAG-ACTC-GCGCTCCCTG-ATANGCCT-GACG-GCGGA-GGAGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAAACGCTATTG-GATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGNGA-GGG--GAGGATGGCTC-TCAGGCGA--AGTTGTTGTTGGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCCG-CTG---GGCATCAGGG--GATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TG-TATGGCATGATGCGAGGGGNAG-GAGCA-GTATGTCAGCT-TCT---GTGGGCNTT-GCAGCC-GGAATAAGC------CCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGAAGTAC-ATGCTGG-T-CG-CTT-TNGAGAGGGTGCATCTAGATTCCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGTCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCGGNAGCTGTGGCTGAGT--TCTTCGCCC--GAATTGGCT
Reference ( gi|2 ) : TTTTAGAAA-AT-CAGACACCGGCAGGTATCGGA-GAGTCAGAGTTGCT-AAACATACTTTTCATAAGAAAAA-AGATGTCCTAAATCCATTTCAACCATTTGCCAAGCGCTA-TCTTGCCCCTGTTGTCCTT-G-CAACCCGCCAAAAACATGT-CCAACAGCAGGATATAAATTTAAGACAACATTGTATTTAATTGTAATGATGGGACACAAATCGGTCTATAGAACGATAGAAACGTACTTTT-GTAATCAAATTGG-GGATGCT-AA-TCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTGTTTTGTCAATTATTACCGTTTTGCCTCCCCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGA--TGCGA-CACCTAGGCCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGACAG-CCTGCCTTTGGACATGTGTATGGCGCCCTGATTGGC------------------------AGCA-TTGGACGTAA-AC-C-CTGCCAGAATTC--GACATGAAGGATGG-CC----C-GGG--GG----A-T-ATT--GTGCTCTGTTTGCGTCTTGG---GCA--------------CAT------------TGCCCGAG------------CCCCCTTA-TGACTCGCAGGACTC-GCGCTCCCTG-ATAGGCCT-GGCG-GCGAA-GTAGATGAGATTACATCAATTCAGGGACT--CTGACTTCAGCGTACTACCGG--ACTGGTTTGATTGGGAGGTTGACTCAGACAAAGGGGACTT--GTTCCTGTCCAACCATACGGTGAAACACTATTG-GATT-AATAGGCAACTCTT-CACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-GGG--GAGGATGGCTT-TCAGGCAA--AGTTGCTGTTGGTCCCTGCTGGTCT----ACAGA-GGTCCTGC-GCC-TATGATATGA-CGTTT-CAGCCA-CTG---GGCATCAGGG--TATAGACTATACCAAGGCTGGGCTTA-GAGATCACTTTATTC--TGCTATGACATGATGCGAAAGGTA--GAGCA-GTATGTCAACT-GCT---GTGGATATT-GCAGCC-GGAATAAGC------TCCCCC----AGCGACA-TGTCTGGGCCGAGATGCTGGGGTACGATGCTGA-TTCG-CTT-TGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT--GCGTTCTGGCCATG--------GTTTACTGAGTGGGTTGAGTTCTCGTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGT--TTTTCGCCCTAGGGTGGGCT
gi|1 : TTTTAGAAA-ATGCAGAC-CCGGCAGGTATCGGACGAGTCA-AGTTGCT-AAACA--CTTTTCATAAGAAAAACAGATGTCCTAAATCCATTTCCAACATTTGCCAAGCGCTAATCTTGCCC-TGTTGTC-TT-G-CA--CCGCCAAAAACATGTTCCAACAGCAGGAT-TAAATTTAAGACAA-ATTGTATTTAATTGTAATGATGGGAC-CAAATCGGTCTATAGAACGATAGAAACGTACTTTTTGTAATCAAATTGGAGGATGCT-AA-TC-ACGTAAAGGACTTTGAAAGTCT-GTATTTTGGTTCCCCTGTTTTGTCAATTATTACCGTTTTGCT---CCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGAGTTGCGAACACC-AGGCC-TCTAGGTTCATTCAAGAGCTCTCT-TAAGACAG-CCTGC-TTTGGACATGTGTATGGCGCCCTGATTGGCC-----------------------AGCAATTGGA-GTAA-AC-C-CTGCCAGGATTC--GACATGAAGAATGG-CC------GGG--GG----A-T-ATT--GTGCTCTGTTGGCGTCTTGG---GCA--------------CAT------------TGCC-GAG------------CCCT-TCACTGACTCGCAG-ACTCCGCGCTTCCTGCATAGGCCTTGGCG-GCGAAAGTAGATGAGATTA-AT-AATTCAGGGACTGCCTGACTTCAGCGTACTACCAGGAACTGGTTTGATTGG-AGGTTGACTCG---AAAAGGGACTTTGGTTCCTGTCCAAC-ATACG-TGAAAC-CTATTG-GATTTAATAG-CAACTCTTACACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-AGG--GAGGATGGCTTGTCAGGCAATAAGTTGCTGTTGGTCC-TGCGGGTCT----ACAGAAGGTCCTGCCGCCGTATGATATGAGCGTTTTCAGCCAGCTG---GG-ATCAGGGCGTATAGACTATACCAAG-CTGG-CTTAAGAGATCACTTT-TCT--TGCTATGACATGATGCGAAAGGTAA-GAGCAAGTATGTCAACTTGCCTAAGTGGATATTTGCAGCCTGGAATAAGC------TCCCCC----AGCGACAATGTCTGGGCCGAGATGCTGGGGTACGATGCTGATTTCG--TT-TGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT---CGTT-TGGCCATG--------GTTTACTGAGTGGGTTGAGTTC-CTTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGTGGTTTTCGCC
gi|12 : TTCAGAAA-AT-CAGACACCCGTAAGCATCGGG-GAGTCAGAGTTGTA-AAGCACATTTTTCTTAAGGAAGA-ATGTGCCCTGAATCCATTTGAACCATTTTACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GACAA-CCGCC-AAAACATAG-TCAACGGCTGG--ATAGATATAAGACAAAATTGTGTTTATAGGTATTTATGAGACATAAAt
gi|7 : AGAAA-AT-CAGACACCCATAGGCATAGGA-GAGTCAGAGTTGGC-AAACACACTTTACTTAAGGACAA-GGATGTTCTCAATCCATTTCAGCCATTTGACAAGTTCTA-TCTTGCCCCTGTTGCCCTT-G-------GC--AAAATATGG-CCGATAGCTGGATA--GATATAAGTCAA-GTTGTATTTATAGGTAATCATGGGGTACCAATCTGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCT-AAATCCTCGTAAAGGAATTTGATAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCCCTTTATCTCGCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCCAGAAGTGGATGT--TGCGA-CACATGAACCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGTAAG-GCTGCCTTTGGACATGTGTCCATCGTCCTGCTTGGC------------------------CGCA-TTGGACGTGG-CCTC-TTGTCTGAATTC--GACATGGAGGATGA-CC----T-TGGAAGGTCAAA-TGACT--GCGGTCTGTTTGCGTTTTTT---GCA--------------CAT------------TGCCCCAG-------------CCCCTTC-TGACTCGCA----------CTCCCTG-ATAGGCAT-GACG-GCGGA-GGAG
gi|11 : catttacAGAAATAT--ACACACCCGTAGGTATCGGA-GAGTAAGAGTT-CTAAAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCTTTTCAACCATTCGATAAGTTCTA-TCGTGCCCCTGTTGTCCTTGG-CAACCCGCCAAAAGCATGG-CTGACAGCTGG--ATAGATATAAGACAAAATTGCATTTATAGGTAATCATGGGACACCAATCGGTCTATAGATCGATAGAAACATATGTTT-GTA---AAGT------ATGCTAAA-TCCACGTAAAGGACTTTGAAAG-
gi|8 : TTGCCTCTGTTCCCCTT-GGCAACCCGCCAAACACATGG-CCGACAGCTGGATA--GATATAAGACAAAATTGTATTCATATGTAATCATGGGACACAAATCGGTCTACAGATCGATAGAAAGATACTTTT-GTAATCAAATTTA-GGATGCTAAA-TCCACGTAAAAGACCTTG-AAG-CT-GTATTTTG-----TTTGTCTTATCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCGAGAAGTGGCTGT--TGCGA-CACATGAACCCACTAGGTCCATTCCAGAGCTCTCTGTAAGTGAG-GCTGCCTTTGGACATGTGTCCAGCGCCCTGCTTGAC------------------------CGCA-TTGGACATGGCCC-C-CTACCAGAATCT--GACATGAAGGATGA-CC----C-AGG--GG----A-
gi|20 : TGTATTTATAGGTAATCATGGGACACAAATCGaaggggtcattcctcactcaaatccgacttagcaatctatttcggtctgtttgcgacttgggcaccttgcc
gi|13 : ataaagacgggaaaGGTCTACAGATCAAAAGAAACGTACTTTT-TTAATCCAATTTG-GGATCAT-AAATCCACGTAAAGGACTTTGAAAG-CTTGTATTTTT-----GATATGTTGTCAATTATTACCCTTTTGCATCCCCGGGTGTCCGGACTCCTTCGTCGCGGCCTCCAGAAGTGACTGT--TGCGA-C-C-----CCCTCTAGGTCCAGTCCTGACCTCTTT
gi|4 : CCACGTAAAAGTTTTTGAAAG-TT-GTATTTTA-----TCTATGTTATTAATCATTACCGTTTTACCCTCCCGGATTTTTAGACTCCTTCGTCTTGACCCCCAGAAGTGACTGT--TGCAA-CACATGATCCCTCTAGGTCCATTTTAGAGTTCTTGGTAAGTGGG-ACTGCCTTTGGACATGTGTCTGGCGCACTACGTGGC------------------------CGTT-TTGGACGTGGTGT-C-ATGCCAGATTTC--GACATGGAGGATGA-CT----C-AGG--GG----A-
gi|3 : -CT-TTATTTTG-----TCTACGTTGTCAATTACTACCCTTTTGCCTCCCCGGATTCCCGG---------------CCTCCAAAAGAGGTTGT--TGCGA-CACACGAGCCTTCTAGGTCAATTCCAAAGCTCTCTGTAAGTGAGGCTTGCCTTTGGACATGTAACCAGCGTCCTGCTTGGCCGAATAAGACATGGCCCCTTCCAGAATA-TAGGACGTGG-CC-C-CTTCCAGAATATAGGACGTGGAGTATGG-TC----CAGGG--GG----A-T-ATagatggaccattccgaactcaaatcaagcaagccattgcggtctgtttgcgtctttggtaccttgccctactcccccccccctcccccctctgacgtgcaggattcgcggtgatatgcctgacgagtgtggagatgaggttgcatacattaaaggactctgacttcagcttactgctggactggtttgatcgggaagtcgactcagacgaaggggacttgttcctgtcaaccaagcggtgaattttttttttgattactagggaactcttcaccttagatgataccaaagtcctatgtaagatgggagaggggaggctggttctcaggcgaagttgttggtggttccggctagtctccgaacagaggtcctgcgcctatgtcatgacgttctagcctattggcattagaggaaagaccgtatcaagccccggttagatattgcttttctggtatggcatgctgcgaggggcaaatagtgtgtcagatcctgtgggcgttgcggtcgtaataaactccacttgtgagcgccatgtccgggctgagatgctg
gi|5 : aTTGTCAGTTATTACCATTTTGCCTCTCCGGGTCTCCGTACTCCTTCATTTCGGCTTCCTGAAGTGGCTGT--TGTAA-TACGTGAGCCCTATAGGTTCATTTCAGAG--CTCTGTAAGTGAG-GCTGCCTTTGAACATGAGTCCGGCACCTTGCTTGAC------------------------CGTA-TTGGATGTGT-CC-C-CTGCCAGAATTC--GCCATGGAGGGTGA-TCGGGGC-GGGGTGG----ACC-ATTCCGTACTCTAATC-CGACTTGGCAAGCAAATGCGATTTTTTGCATCTTTTTGAACCTTGCCTGAG------------CCCCCTTC-TGACTTGCA----------CTCTCTG-ATTAGCTT-GACG-ATGAA-GGAGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTATTGCTGG--ACTGGTTTGATGGGGAGGTCGACGCAGACAAAGGGGACCT--ATTCCTGTCCAAACAAGCGGTGAAACGCAATTG-GATT-AATAGGCAACTTTT-AACCCTAGATGATACC-AAAGTCCTATGGAAGATGAGAGAGGGG--GAGGATGGATT-TCAGGTGA--AGTTGTTGGTCTTCCCGGCTGGTCTCTGAACAGA-GATCGTGC-GTG-TATGCCATGA-AGTTT-CAGCCG-CTG---GGCATCAGGG--GATATACTGTACCAAGGCCCGGCTTggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|18 : tttatgGCCCTGCTTGGC------------------------CGCA-CTGGACGTGG-CC-CTCTGCCAGAATTC--GACATGGAGGATGACCC----C-AGG--GG----A-A-ATga
gi|8 : -T-ATT--TCGGTCTGTTTGCGACTTGG---GCA--------------CCT------------TGCCgggccgttccgcact
gi|4 : ttgcctctgttccccttggcaacccgccaaacacatggccgacagctggatagatataagacaaaattgtattcatatgtaatcatgggacacaaatcggtctacagatcgatagaaagatacttttgtaatcaaatttaggatgctaaatccacgtaaaagaccttgaagctgtattttgtttgtcttatcaattattacccttttgcctccccgggtctccggactccttcgtgtcggcctcgagaagtggctgttgcgacacatgaacccactaggtccattccagagctctctgtaagtgaggctgcctttggacatgtgtccagcgccctgcttgaccgcattggacatggccccctaccagaatctgacatgaaggatgacccaggggaaaggggtcattcctcactcaaatccgacttagcaatc-ATT--GCGGTCTGTTTGCGTCTTTG---GTA--------------CCT------------TGCCCTACTCCCCCCCCCCTCCCCCCTC-TGACGTGCAGGATTC-GCGGT----G-ATATGCCT-GACGAGTGTG-G-AGATGAGGTTGCATACATTAAAGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATCGGGAAGTCGACTCAGACGAAGGGGACTT--GTTCCTGTC-AACCAAGCGGTGAATTTTTTTTTTGATT-ACTAGGGAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGTAAGATGGGAGA-GGG--GAGGCTGGTTC-TCAGGCGA--AGTTGTTGGTGGTTCCGGCTAGTCTCCGAACAGA-GGTCCTGC-GCC-TATGTCATGA-CGTTC-TAGCCT-ATT---GGCATTAGAG--GAAAGACCGTATCAAGCCCCGG-TTA-GATATTGCTT--TTC--TGGTATGGCATGCTGCGAGGGGCA---AATA-GTGTGTCAGAT-CCT---GTGGGCGTT-GCGGTC-GTAATAAAC------TCCACTTGTGAGCGCCA-TGTCCGGGCTGAGATGCTG
gi|15 : ccacgtaaaagtttttgaaagttgtattttatctatgttattaatcattaccgttttaccctcccggatttttagactccttcgtcttgacccccagaagtgactgttgcaacacatgatccctctaggtccattttagagttcttggtaagtgggactgcctttggacatgtgtctggcgcactacgtggccgttttggacgtggtgtcatgccagatttcgacatggaggatgactcaggggaagatggaccattccgaactcaaatcaagcaagcc-ATT--GCAATCTGTTTGCGTCTTTG---GCA--------------AAT------------TGCCCGA-------------TCCCCTTC-TGACTCGCATAACTC-GCGCTCCCTG-A----------CG-GCGGA-GGAGATGAGTTTGC
gi|3 : gggggagatgggcctttccgcactcaaatccgacgtagcaagcaTCTGTTTGTGTCTTGG---GCA--------------CAT------------TGCCAGAG------------CACCCATC-TGACTGGCAGTATTC-GCGCTCCATG-ATATGACT-GACA-GCGGA-GGAGATTATTTTGCATCAATTCAAGAACT--CTGACTTCAGCTTACCGCTAG--ACTGGTTTGATGGGGAGGTTGATCCAGACGAAGAGGACTT--GTTCCTGTCCAACCAAGCGCTGAAACACTATTG-AATT-AATAGGCAACTCTT-CACCTTAGATGATACCAAAAGTCCTATGGAAGA----TGA-GAGTTGGGGATGGCTC-TCAGGCGA--AGT---TGTTGGGGCCGGCTGGTCTCCGAACAGA-GTTCTTGC-GCC-TATGTCATGA-CGTTC-CAGCCG-CTGGCTGGTATCAGGG--GA-AGACCGTTACAA-GCCCGGCTTA-GGGATCGTTTT-TTCCATG-TATGGCA-GATGCGAAGGAGAGCGAGCA-GTATGCCAGTT-TCT---TTTGGCCTT-GTAGCC-GGATTAAAG------CGCCTT----AGTGCCA-TGGCCAGGCCTATATGCTAAAATAT-ATGCTGG---CGCCTT-TTGA-AGGTGGCATTTAGATT-------CCTTTTATCACAATCAA-ACAAGGGCGAATGTGTTCACTTTCT-GTCATG--------GTT
gi|10 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacagcggGCCCGA--------------CCCCTTC-TGACTCGCAGGACAT-GTGCTCCCTG-ATATCCCT-GACG-G---A-GGAGATGAGTTTGCATCAATGCAGGGTCT--CTGACTTCATGTTAATGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGAACTT--GTTCCTGTCCAACCAAGTGATGAAACACTATTG-TATT-AATAAGTGACTCTT-CACTATAGATGATATC-AAAG---------------------GG--GAGAATGACTC-TCAGGCGA--AGTTG---TTGGT----------------------GGTCCCG--GC----TGGT-------CTC-CGAACA-CTG---GGCATTAGGG--GATAGACCGTACCAAGGCTGGGCTTA-GAGATT-TTTTA--------TATGGCATGAga
gi|6 : TGATGCGAGAA--A--CAGCA-GTATGTCAGCC-TCT---GTGGACCTT-GCAGCC-GGAATAAGCGCCCCCCCCCCC----AGCGCCA-TGCCCGGGCCGAGATGCTGAAGTACCATGCTTG-TGCC-CCTGTAGAGAGGGTGCATCTAGATTCTCTTGGCCCTCTGCCACAATCCACCCAAAGGC-AATGTGT--ATGTTCTGGTCATGGTTGACCAGTTTACTAAGTGGGTTGAGCGCGTGCCACCCCTCTCC--------------CACGGCTGCAGAAGCTGTGGCTGAGT--TCTTCGTCC
gi|9 : --------GTTTACTAAGTGGGTTGAGTGCAAGCCGCTACCCTCCCAAACTGCAGAGGTCACGGCTGTGTAAGCTGTGGCTGAGT--TCCTTCCCC--GAATTGGCTgatttggctgtccgttccaagagttcaatgaccagggtcgaattatgagagtaagcttttggggggggggatttgtgaattgttgcagatccataaggagcggacgaccccttaccgtccctcagctaatggacaagtcgagaggtataatcggaccttgatggatgctgtccaatgttatatcaacaaagtacagggtcattgggacgagcacttagcccagattgcgggcgctttgtgctctgcagtcaataggcacacatattatacggccaaccgactcatgatgggcatggagatcaacatgcccgcagacctgatgtttggtactccacagaggaaccctcccgtgtaaatggaagct
gi|17 : accaTACTAAGTGGGTTGAGTGTGTGCCGCTCCCTTCCCAGACTGCAGAGGTGAAGACTGCAGCAGCTGTGACTGAGT--TCTTCACCCgtccgttcctattgcaagtgttcacggaccagggtgagaattttgagaataagcattttggggagcatctctgaactgttgcagatccataaggcgcggtcgaccccttacagtccctcagctaattgacaagtcgagaggtataatcggaccttgatgaatgctgttcaatgttatatcgacaaagcgcaggatcattgggatgaacacttggccccaattgcgggcgctttgtactctgcagtcaataggtacacagaccatccgatccatgatgggcagggagatcaacatgcccgcagacgtgatatttggtactccacagagataccctccagtggacatggaagctt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CACGACCGCAAACCTGATACCGGTATTTGGTACTGCACAGAGGGACCCTCCAGTGGACATGGAAGCTTATGTGGTGAATTTGGAGCGGGCAATCCGGACAGCCCATGAGACGGCGCATTACCGCAGTACATCTGAAGAGCAGATCAAGAGGTATTATGACATTAAAGA
Unaligned ( gi|16 ): GCATTCCCGCCTTCGGAAGGGGGATTAAGATGGATTATGACCTTAAAGAATTCACTCGCTCCTTCAATCACAAAATTGCAAGGCTTTTCAGTGCTGAC
Unaligned ( gi|19 ): TACCGTCCCTCAGCTAATGGACAAGTTTAGAGATATAATCAGACCCTAATTGATAATATGCGATTTTAT
Alignments
lowQualScore : 1 11111 1111 22 11111 111111 11 1111 44444444444444 444444444444 1 1 2222 111 11 1 22 11 11 222222 1111 3 4444 11 11 1 1 222 22222222 11 11
lowQualScore : 0 8 8 0 8 8 0 1 8 1 0 0 8 6 66666 3 6 2222 77 5 0 6 3 6 7 22 5 5 22222 2 1 3 2 66 2 0 5 5 5 888 5 5 5 333333 33 0000 555 666 888 77777777777777 66 888 555555555555 5 1 5 2 5 1 5 1 2 99 99 2 2 99 5 6 0 6 6 6 3 777 3 6 6 99 1 44 1111 6 6 6 1 6 6 6 111 1 777 3 2 1 8 0 1 8 11 6 6 1 44 8 11 11 1 8 8 333333 7777 8 0 0000 22 1 2 00 0 0 000 2 2 99999999 99 1 2 1 3 11 33 7
lowQualScore : . . . . . . . . . . . . . . ..... . . .... .. . . . . . . .. . . ..... . . . . .. . . . . . ... . . . ...... .. .... ... ... ... .............. .. ... ............ . . . . . . . . . .. .. . . .. . . . . . . . ... . . . .. . .. .... . . . . . . . ... . ... . . . . . . . .. . . . .. . .. .. . . . ...... .... . . .... .. . . .. . . ... . . ........ .. . . . . .. .. .
lowQualScore : 0 0 0 8 0 0 8 4 0 4 6 6 0 7 55555 2 7 8888 99 0 7 7 0 7 3 77 0 7 55555 5 4 6 8 99 0 2 7 0 0 222 0 0 0 999999 88 6666 777 222 888 00000000000000 99 888 111111111111 0 4 0 8 0 4 0 9 5 22 22 5 2 22 2 7 5 7 7 7 7 222 3 7 7 22 2 22 5555 7 7 7 0 7 7 7 777 0 555 5 5 0 0 8 4 0 00 0 4 0 44 0 00 00 0 0 0 000000 0000 0 0 8888 55 0 5 88 0 0 888 5 5 00000000 66 4 8 0 2 00 88 8
consensus : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAA-TCCACGTAAAGGACTTTGAAAG-C-TGTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------G-ACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTTG-TGGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTT--TGCTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAGC------TCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-CCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
Reference ( family-5470 ) : TTT-CAGAAA-AT-CAGACACCCGTAGGCATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAAATCCACGTAAAGGACTTTGAAAG-C-TGTATTTTG-----TCTATGTTGTCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---A----------G-ACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGNGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTTGTTGGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TG-TATGGCATGATGCGAGGGGNAG-GAGCA-GTATGTCAGCTT--CT--GTGGGCNTT-GCAGCC-GGAATAAGC------CCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGAAGTAC-ATGCTGG-T--CG-CTTTNGAGAGGGTGCATCTAGATTCCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGTCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCGGNAGCTGTGGCTGAGT--TCTTCGCCC--GAATTGGCT
gi|1 : TTT-TAGAAA-ATGCAGAC-CCGGCAGGTATCGGACGAGTCA-AGTTGCT-AAACAC--TTTTCATAAGAAAAACAGATGTCCTAAATCCATTTCCAACATTTGCCAAGCGCTAATCTTGCCC-TGTTGTC-TT-G-CA--CCGCCAAAAACATGTTCCAACAGCAGGAT-TAAATTTAAGACA--AA-TTGTATTTAATTGTAATGATGGGAC-CAAATCGGTCTATAGAACGATAGAAACGTACTTTTTGTAATCAAATTGGAGGATGCTAA---TCACGTAAAGGACTTTGAAAGTC-TGTATTTTGGTTCCCCTGTTTTGTCAATTATTACCGTTTTGCT---CCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGAGTTGCGA-ACACCAGGCCTCTAGGTTCATTCAAGAGCTCTCT-TAAGACAGCC-TGC-TTTGGACATGTGTATGGCGCCCTGATTGGCCAGCAATTGGA-GTAA-A-C-C-CTGCCAGGATTCGACATGAAGAATGG-CC------GGG--GG----A-T-ATTGTG--CTCTGTTGGCGTCTTGG---GCACATTGCC-GA------------GCCCTTCACTGA--CTCGC---A----------G-ACTCCGCGCTTCCTGCATAGGCCTTGGCGGCGAAAGTAGATGAGATTA-AT-AATTCAGGGACTGCCTGACTTCAGCGTACTACCAGGAACTGGTTTGATTGG-AGGTTGACTC-GA--AAAGGGACTTTGGTTCCTGTCCAAC-ATACG-TGAA-AC-CTATTGGATTTAATAG-CAACTCTTACACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-AGGGAGGATGGCTTGTCAGGCAATAAGTTGCTGTTGGTCCTG-CGGGTCT----ACAGAAGGTCCTGCCGCCGTATGATATGAGCGTTTTCAGCCAGCTG---GG-ATCAGGGCGTATAGACTATACCAAG--CTGGCTTAAGAGATCACTTT-TCT--TGCTATGACATGATGCGAAAGGTAA-GAGCAAGTATGTCAACTTGCCTAAGTGGATATTTGCAGCCTGGAATAAGC------TCCCCC----AGCGACAATGTCTGGGCCGAGATGCTGGGGTACGATGCTGA-TTTCG--TTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT---CGTT-TGGCCATG--------GTTTACTGAGTGGGTTGAGTTC-CTTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGTGGTTTTCGCC
gi|10 : GCCCGA--------------CCCCTTCTGA--CTCGC---A----------GGACAT-GTGCTCCCTG-ATATCCCT-GACGG---AGG-AGATGAGTTTGCATCAATGCAGGGTCT--CTGACTTCATGTTAATGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGAACTT--GTTCCTGTCCAACCAAGTGATGAA-ACACTATTGTATT-AATAAGTGACTCTT-CACTATAGATGATATC-AAAG---------------------GGGAGAATGACTC-TCAGGCGA--AGTTGTT---------GG-TGGTCCC---------GG--CTG---------GTC--------TC-CGAAC-ACTG---GGCATTAGGG-G-ATAGACCGTACCAAGGCTGGGCTTA-GAGA-----TT-TTT--TA-TATGGCATGAt
gi|11 : AGAAATAT--ACACACCCGTAGGTATCGGA-GAGTAAGAGTT-CTAAAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCTTTTCAACCATTCGATAAGTTCTA-TCGTGCCCCTGTTGTCCTTGG-CAACCCGCCAAAAGCATGG-CTGACAGCTGG--ATAGATATAAGACA--AAATTGCATTTATAGGTAATCATGGGACACCAATCGGTCTATAGATCGATAGAAACATATGTTT-GTA---AAGT------ATGCT-AAATCCACGTAAAGGACTTTGAAAG-
gi|12 : TT-CAGAAA-AT-CAGACACCCGTAAGCATCGGG-GAGTCAGAGTTGTA-AAGCACATTTTTCTTAAGGAAGA-ATGTGCCCTGAATCCATTTGAACCATTTTACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GACAA-CCGCC-AAAACATAG-TCAACGGCTGG--ATAGATATAAGACA--AAATTGTGTTTATAGGTATTTATGAGACATAAA
gi|13 : GGTCTACAGATCAAAAGAAACGTACTTTT-TTAATCCAATTTG-GGATCAT-AAATCCACGTAAAGGACTTTGAAAG-CTTGTATTTTT-----GATATGTTGTCAATTATTACCCTTTTGCATCCCCGGGTGTCCGGACTCCTTCGTCGCGGCCTCCAGAAGTGACTG--TTGCGAC-C-----CCCTCTAGGTCCAGTCCTGACCTCTTT
gi|15 : -ATTGCA--ATCTGTTTGCGTCTTTG---GCAAATTGCCCGA-------------TCCCCTTCTGA--CTCGC---AT---------A-ACTC-GCGCTC----------CCT-GACGGCGGAGG-AGATGAGTTTGC
gi|17 : gggggagatgggcctttccgcactcaaatccgacgtagcaagcaTACTAAGTGGGTTGAGTGTGTGCCGCTCCCTTCCCAGACTGCAGAGGTGAAGACTGCAGCAGCTGTGACTGAGT--TCTTCACCC--AATTTGGCT
gi|18 : GCCCTGCTTGGCC-GCA-CTGGACGTGG-C-C-CTCTGCCAGAATTCGACATGGAGGATGACCC----C-AGG--GG----A-A-AT---G--GGCCGTTgtctg
gi|2 : TTT-TAGAAA-AT-CAGACACCGGCAGGTATCGGA-GAGTCAGAGTTGCT-AAACATACTTTTCATAAGAAAAA-AGATGTCCTAAATCCATTTCAACCATTTGCCAAGCGCTA-TCTTGCCCCTGTTGTCCTT-G-CAACCCGCCAAAAACATGT-CCAACAGCAGGATATAAATTTAAGACA--ACATTGTATTTAATTGTAATGATGGGACACAAATCGGTCTATAGAACGATAGAAACGTACTTTT-GTAATCAAATTGG-GGATGCTAA--TCCACGTAAAGGACTTTGAAAG-C-TGTATTTTG-----TCTGTTTTGTCAATTATTACCGTTTTGCCTCCCCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTG--ATGCGACACCTAGGCCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGACAGCC-TGCCTTTGGACATGTGTATGGCGCCCTGATTGGCA-GCA-TTGGACGTAA-A-C-C-CTGCCAGAATTCGACATGAAGGATGG-CC----C-GGG--GG----A-T-ATTGTG--CTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTATGA--CTCGC---AG---------G-ACTC-GCGCTCCCTG-ATAGGCCT-GGCGGCGAAGT-AGATGAGATTACATCAATTCAGGGACT--CTGACTTCAGCGTACTACCGG--ACTGGTTTGATTGGGAGGTTGACTCAGACAAAGGGGACTT--GTTCCTGTCCAACCATACGGTGAA-ACACTATTGGATT-AATAGGCAACTCTT-CACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-GGGGAGGATGGCTT-TCAGGCAA--AGTTGCTGTTGGTCCCTGCTGGTCT----ACAGA-GGTCCTGC-GCC-TATGATATGA-CGTTT-CAGCC-ACTG---GGCATCAGGG-T-ATAGACTATACCAAGGCTGGGCTTA-GAGATCACTTTATTC--TGCTATGACATGATGCGAAAGGTA--GAGCA-GTATGTCAACTG--CT--GTGGATATT-GCAGCC-GGAATAAGC------TCCCCC----AGCGACA-TGTCTGGGCCGAGATGCTGGGGTACGATGCTGATT--CG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT--GCGTTCTGGCCATG--------GTTTACTGAGTGGGTTGAGTTCTCGTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGT--TTTTCGCCCTAGGGTGGGCTccgcact
gi|20 : ATA-AAGACGGGAAAT-GTATTTATAGGTAATCATGGGACACAAATCG
gi|3 : -C-TTTATTTTG-----TCTACGTTGTCAATTACTACCCTTTTGCCTCCCCGGAT--------TCC-------CGGCCTCCAAAAGAGGTTG--TTGCGACACACGAGCCTTCTAGGTCAATTCCAAAGCTCTCTGTAAGTGAGGCTTGCCTTTGGACATGTAACCAGCGTCCTGCTTGGCC-GAA-TAAGACATGG-C-C-C-CTTCCAGAAT
gi|3 : aGACGTGGAGTATGG-TC----CAGGG--GG----A-T-ATataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|3 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatatagGCG--GTCTGTTTGTGTCTTGG---GCACATTGCCAGA------------GCACCCATCTGA--CTGGC---A----------GTATTC-GCGCTCCATG-ATATGACT-GACAGCGGAGG-AGATTATTTTGCATCAATTCAAGAACT--CTGACTTCAGCTTACCGCTAG--ACTGGTTTGATGGGGAGGTTGATCCAGACGAAGAGGACTT--GTTCCTGTCCAACCAAGCGCTGAA-ACACTATTGAATT-AATAGGCAACTCTT-CACCTTAGATGATACCAAAAGTCCTATGGAAGAT--GAGA-GTTGGGGATGGCTC-TCAGGCGA--AGTTGTTG--GG-GCCGGCTGGTCTCCGAACAGA-GTTCTTGC-GCC-TATGTCATGA-CGTTC-CAGCC-GCTGGCTGGTATCAGGG-G-A-AGACCGTTACAA-GCCCGGCTTA-GGGATCGTTTT-TTCCATG-TATGGCA-GATGCGAAGGAGAGCGAGCA-GTATGCCAGTTT--CT--TTTGGCCTT-GTAGCC-GGATTAAAG------CGCCTT----AGTGCCA-TGGCCAGGCCTATATGCTAAAATAT-ATGCTGG----CGCCTTTTGA-AGGTGGCATTTAGATT-------CCTTTTATCACAATCAA-ACAAGGGCGAATGTGTTCACTTTCT-GTCATG--------GTTggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|4 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacaCCACGTAAAAGTTTTTGAAAG-T-TGTATTTTA-----TCTATGTTATTAATCATTACCGTTTTACCCTCCCGGATTTTTAGACTCCTTCGTCTTGACCCCCAGAAGTGACTG--TTGCAACACATGATCCCTCTAGGTCCATTTTAGAGTTCTTGGTAAGTGGGAC-TGCCTTTGGACATGTGTCTGGCGCACTACGTGGCC-GTT-TTGGACGTGG-TGT-C-ATGCCAGATTTCGACATGGAGGATGA-CT----C-AGG--GG----A-ga
gi|4 : -ATTGCG--GTCTGTTTGCGTCTTTG---GTACCTTGCCCTACTCCCCCCCCCCTCCCCCCTCTGA--CGTGC---AG---------G-ATTC-GCG----GTG-ATATGCCT-GACGAGTGTGG-AGATGAGGTTGCATACATTAAAGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATCGGGAAGTCGACTCAGACGAAGGGGACTT--GTTCCTGT-CAACCAAGCGGTGAATTTTTTTTTTGATT-ACTAGGGAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGTAAGATGGGAGA-GGGGAGGCTGGTTC-TCAGGCGA--AGTTGTTGGTGGTTCCGGCTAGTCTCCGAACAGA-GGTCCTGC-GCC-TATGTCATGA-CGTTC-TAGCC-TATT---GGCATTAGAG-G-AAAGACCGTATCAAGCCCCGG-TTA-GATATTGCTTT-TCT--GG-TATGGCATGCTGCGAGGGGCA---AATA-GTGTGTCAGATC--CT--GTGGGCGTT-GCGGTC-GTAATAAAC------TCCACTTGTGAGCGCCA-TGTCCGGGCTGAGATGCTGagatggaccattccgaactcaaatcaagcaagccattgcggtctgtttgcgtctttggtaccttgccctactcccccccccctcccccctctgacgtgcaggattcgcggtgatatgcctgacgagtgtggagatgaggttgcatacattaaaggactctgacttcagcttactgctggactggtttgatcgggaagtcgactcagacgaaggggacttgttcctgtcaaccaagcggtgaattttttttttgattactagggaactcttcaccttagatgataccaaagtcctatgtaagatgggagaggggaggctggttctcaggcgaagttgttggtggttccggctagtctccgaacagaggtcctgcgcctatgtcatgacgttctagcctattggcattagaggaaagaccgtatcaagccccggttagatattgcttttctggtatggcatgctgcgaggggcaaatagtgtgtcagatcctgtgggcgttgcggtcgtaataaactccacttgtgagcgccatgtccgggctgagatgctg
gi|5 : ccacgtaaaagtttttgaaagttgtattttatctatgttattaatcattaccgttttaccctcccggatttttagactccttcgtcttgacccccagaagtgactgttgcaacacatgatccctctaggtccattttagagttcttggtaagtgggactgcctttggacatgtgtctggcgcactacgtggccgttttggacgtggtgtcatgccagatttcgacatggaggatgactcaggggaagatggaccattccgaactcaaatcaagcaagcc-----TTTATGTTGTCAGTTATTACCATTTTGCCTCTCCGGGTCTCCGTACTCCTTCATTTCGGCTTCCTGAAGTGGCTG--TTGTAATACGTGAGCCCTATAGGTTCATTTCAGAG--CTCTGTAAGTGAGGC-TGCCTTTGAACATGAGTCCGGCACCTTGCTTGACC-GTA-TTGGATGTGT-C-C-C-CTGCCAGAATTCGCCATGGAGGGTGA-TCGGGGC-GGGGTGG----ACC-ATTCCGTACTCTAATC-CGACTTGGCAAGCAAA-TG--CGATTTTTT------GCATCTTTTTGAACCTTGCCTGAGCCCCCTTCTG-ACTT-GCACTCTCTG-ATTAGCTT-GACGATGAAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTATTGCTGG--ACTGGTTTGATGGGGAGGTCGACGCAGACAAAGGGGACCT--ATTCCTGTCCAAACAAGCGGTGAA-ACGCAATTGGATT-AATAGGCAACTTTT-AACCCTAGATGATACC-AAAGTCCTATGGAAGATGAGAGAGGGGGAGGATGGATT-TCAGGTGA--AGTTGTTGGTCTTCCCGGCTGGTCTCTGAACAGA-GATCGTGC-GTG-TATGCCATGA-AGTTT-CAGCC-GCTG---GGCATCAGGG-G-ATATACTGTACCAAGGCCCGGCTT
gi|6 : TGATGCGAG---AAA-CAGCA-GTATGTCAGCCT--CT--GTGGACCTT-GCAGCC-GGAATAAGCGCCCCCCCCCCC----AGCGCCA-TGCCCGGGCCGAGATGCTGAAGTACCATGCTTG-TGCCC-CTGTAGAGAGGGTGCATCTAGATTCTCTTGGCCCTCTGCCACAATCCACCCAAAGGC-AATGTGT--ATGTTCTGGTCATGGTTGACCAGTTTACTAAGTGGGTTGAGCGCGTGCCACCCCTCTCC--------------CACGGCTGCAGAAGCTGTGGCTGAGT--TCTTCGTCC--GATTTGGCTga
gi|7 : TTTACAGAAA-AT-CAGACACCCATAGGCATAGGA-GAGTCAGAGTTGGC-AAACACACTTTACTTAAGGACAA-GGATGTTCTCAATCCATTTCAGCCATTTGACAAGTTCTA-TCTTGCCCCTGTTGCCCTT-G-------GC--AAAATATGG-CCGATAGCTGGATA--GATATAAGTCA--AG-TTGTATTTATAGGTAATCATGGGGTACCAATCTGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAA-TCCTCGTAAAGGAATTTGATAG-C-TGTATTTTG-----TCTATGTTGTCAATTATTACCCCTTTATCTCGCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCCAGAAGTGGATG--TTGCGACACATGAACCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGTAAGGC-TGCCTTTGGACATGTGTCCATCGTCCTGCTTGGCC-GCA-TTGGACGTGG-C-CTC-TTGTCTGAATTCGACATGGAGGATGA-CC----T-TGGAAGGTCAAA-TGACTGCG--GTCTGTTTGCGTTTTTT---GCACATTGCCCCA------------G-CCCCTTCTGA--CTCGC---A--------------------CTCCCTG-ATAGGCAT-GACGGCGGAGG-AGgtccgttccaagagttcaatgaccagggtcgaattatgagagtaagcttttggggggggggatttgtgaattgttgcagatccataaggagcggacgaccccttaccgtccctcagctaatggacaagtcgagaggtataatcggaccttgatggatgctgtccaatgttatatcaacaaagtacagggtcattgggacgagcacttagcccagattgcgggcgctttgtgctctgcagtcaataggcacacatattatacggccaaccgactcatgatgggcatggagatcaacatgcccgcagacctgatgtttggtactccacagaggaaccctcccgtgtaaatggaagct
gi|8 : caTTGCCTCTGTTCCCCTT-GGCAACCCGCCAAACACATGG-CCGACAGCTGGATA--GATATAAGACA--AAATTGTATTCATATGTAATCATGGGACACAAATCGGTCTACAGATCGATAGAAAGATACTTTT-GTAATCAAATTTA-GGATGCTAAA-TCCACGTAAAAGACCTTGAA-G-C-TGTATTTTG-----TTTGTCTTATCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCGAGAAGTGGCTG--TTGCGACACATGAACCCACTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCAGCGCCCTGCTTGACC-GCA-TTGGACATGGCC-C-C-CTACCAGAATCTGACATGAAGGATGA-CC----C-AGG--GG----A-
gi|8 : -T-ATTTCG--GTCTGTTTGCGACTTGG---GCACCTTGCCaaggggtcattcctcactcaaatccgacttagcaatctatttcggtctgtttgcgacttgggcaccttgcc
gi|9 : ttgcctctgttccccttggcaacccgccaaacacatggccgacagctggatagatataagacaaaattgtattcatatgtaatcatgggacacaaatcggtctacagatcgatagaaagatacttttgtaatcaaatttaggatgctaaatccacgtaaaagaccttgaagctgtattttgtttgtcttatcaattattacccttttgcctccccgggtctccggactccttcgtgtcggcctcgagaagtggctgttgcgacacatgaacccactaggtccattccagagctctctgtaagtgaggctgcctttggacatgtgtccagcgccctgcttgaccgcattggacatggccccctaccagaatctgacatgaaggatgacccaggggaaaggggtcattcctcactcaaatccgacttagcaatc--------GTTTACTAAGTGGGTTGAGTGCAAGCCGCTACCCTCCCAAACTGCAGAGGTCACGGCTGTGTAAGCTGTGGCTGAGT--TCCTTCCCC--GAATTGGCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CACGACCGCAAACCTGATACCGGTATTTGGTACTGCACAGAGGGACCCTCCAGTGGACATGGAAGCTTATGTGGTGAATTTGGAGCGGGCAATCCGGACAGCCCATGAGACGGCGCATTACCGCAGTACATCTGAAGAGCAGATCAAGAGGTATTATGACATTAAAGA
Unaligned ( gi|16 ): GCATTCCCGCCTTCGGAAGGGGGATTAAGATGGATTATGACCTTAAAGAATTCACTCGCTCCTTCAATCACAAAATTGCAAGGCTTTTCAGTGCTGAC
Unaligned ( gi|19 ): TACCGTCCCTCAGCTAATGGACAAGTTTAGAGATATAATCAGACCCTAATTGATAATATGCGATTTTAT
Alignments
lowQualScore : 1 11111 1111 11111 111111 11 1111 44444444444444 2222222222 1 222222222 2222 111 11 1 1111 11 11 222222 1111 2222 11 1 1 222 22222222 11 11
lowQualScore : 0 8 8 0 8 8 0 1 8 1 0 0 8 6 66666 3 6 2222 77 5 0 6 3 6 7 5 5 22222 1 1 3 2 66 2 0 5 5 5 888 5 5 5 333333 33 0000 555 666 888 77777777777777 66 888 4444444444 5 1 5 2 5 1 5 1 2 99 0 99 1 99 5 6 0 6 6 6 3 777 3 6 6 99 444444444 1111 6 6 6 1 6 6 6 111 1 777 3 2 1 8 0 1 5 8 11 5 55 3333 8 11 11 1 8 8 333333 7777 8 8 7777 22 0 2 77 0 0 000 2 2 99999999 99 1 1 11 33 1
lowQualScore : . . . . . . . . . . . . . . ..... . . .... .. . . . . . . . . ..... . . . . .. . . . . . ... . . . ...... .. .... ... ... ... .............. .. ... .......... . . . . . . . . . .. . .. . .. . . . . . . . ... . . . .. ......... .... . . . . . . . ... . ... . . . . . . . . .. . .. .... . .. .. . . . ...... .... . . .... .. . . .. . . ... . . ........ .. . . .. .. .
lowQualScore : 0 0 0 8 0 0 8 4 0 4 6 6 0 7 55555 2 7 8888 99 0 7 7 0 7 3 0 7 55555 0 4 6 8 99 0 2 7 0 0 222 0 0 0 999999 88 6666 777 222 888 00000000000000 99 888 5555555555 0 4 0 8 0 4 0 9 5 22 7 22 0 22 2 7 5 7 7 7 7 222 7 7 7 22 888888888 5555 7 7 7 0 7 7 7 777 0 555 5 5 0 0 8 4 6 0 00 0 22 6666 0 00 00 0 0 0 000000 0000 0 8 5555 55 2 5 22 0 0 888 5 5 00000000 66 4 0 00 88 0
consensus : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGCTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
Reference ( family-5470 ) : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTT--TGCTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-CCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
gi|1 : TTT-TAGAAA-ATGCAGAC-CCGGCAGGTATCGGACGAGTCA-AGTTGCT-AAACAC--TTTTCATAAGAAAAACAGATGTCCTAAATCCATTTCCAACATTTGCCAAGCGCTAATCTTGCCC-TGTTGTC-TT-G-CA--CCGCCAAAAACATGTTCCAACAGCAGGAT-TAAATTTAAGACA--AA-TTGTATTTAATTGTAATGATGGGAC-CAAATCGGTCTATAGAACGATAGAAACGTACTTTTTGTAATCAAATTGGAGGATGCTAA--TCACGTAAAGGACTTTGAAAGTCT-GTATTTTGGTTCCCCTGTTTTGTCAATTATTACCGTTTTGCT---CCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGAGTTGCGA-ACACCAGGCCTCTAGGTTCATTCAAGAGCTCTCT-TAAGACAGCC-TGC-TTTGGACATGTGTATGGCGCCCTGATTGGCCAGCAATTGGA-GTAA-A-C-C-CTGCCAGGATTCGACATGAAGAATGG-CC------GGG--GG----A-T-ATTGTG--CTCTGTTGGCGTCTTGG---GCACATTGCC-GA------------GCCCTTCACTGA--CTCGC---AG----------ACTCCGCGCTTCCTGCATAGGCCTTGGCGGCGAAAGTAGATGAGATTA-AT-AATTCAGGGACTGCCTGACTTCAGCGTACTACCAGGAACTGGTTTGATTGG-AGGTTGACTC-GA--AAAGGGACTTTGGTTCCTGTCCAAC-ATACG-TGAA-AC-CTATTGGATTTAATAG-CAACTCTTACACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-AGGGAGGATGGCTTGTCAGGCAATAAGTTGCT-G-TTGGTCCTG-CGGGTCT----ACAGAAGGTCCTGCCGCCGTATGATATGAGCGTTTTCAGCCAGCTG---GG-ATCAGGGCGTATAGACTATACCAAG--CTGGCTTAAGAGATCACTTT-TCT--TGCTATGACATGATGCGAAAGGTAA-GAGCAAGTATGTCAACTTGCCTAAGTGGATATTTGCAGCCTGGAATAAG------CTCCCCC----AGCGACAATGTCTGGGCCGAGATGCTGGGGTACGATGCTGATT-TCG--TTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT---CGTT-TGGCCATG--------GTTTACTGAGTGGGTTGAGTTC-CTTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGTGGTTTTCGCC
gi|10 : GCCCGA--------------CCCCTTCTGA--CTCGC---AG---------GACAT-GTGCTCCCTG-ATATCCCT-GACGG---AGG-AGATGAGTTTGCATCAATGCAGGGTCT--CTGACTTCATGTTAATGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGAACTT--GTTCCTGTCCAACCAAGTGATGAA-ACACTATTGTATT-AATAAGTGACTCTT-CACTATAGATGATATC-AAAG---------------------GGGAGAATGACTC-TCAGGCGA--AGTTGTT-----------GG-TGGTCCC---------GG--CTG---------GTC--------TC-CGAAC-ACTG---GGCATTAGGG-G-ATAGACCGTACCAAGGCTGGGCTTA-GAGA-----TT-TTT--TA-TATGGCATGAt
gi|11 : AGAAATAT--ACACACCCGTAGGTATCGGA-GAGTAAGAGTT-CTAAAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCTTTTCAACCATTCGATAAGTTCTA-TCGTGCCCCTGTTGTCCTTGG-CAACCCGCCAAAAGCATGG-CTGACAGCTGG--ATAGATATAAGACA--AAATTGCATTTATAGGTAATCATGGGACACCAATCGGTCTATAGATCGATAGAAACATATGTTT-GTA---AAGT------ATGCTAAATCCACGTAAAGGACTTTGAAAG-
gi|12 : TT-CAGAAA-AT-CAGACACCCGTAAGCATCGGG-GAGTCAGAGTTGTA-AAGCACATTTTTCTTAAGGAAGA-ATGTGCCCTGAATCCATTTGAACCATTTTACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GACAA-CCGCC-AAAACATAG-TCAACGGCTGG--ATAGATATAAGACA--AAATTGTGTTTATAGGTATTTATGAGACATAAA
gi|13 : GGTCTACAGATCAAAAGAAACGTACTTTT-TTAATCCAATTTG-GGATCATAAATCCACGTAAAGGACTTTGAAAG-CTTGTATTTTT-----GATATGTTGTCAATTATTACCCTTTTGCATCCCCGGGTGTCCGGACTCCTTCGTCGCGGCCTCCAGAAGTGACTG--TTGCGAC-C-----CCCTCTAGGTCCAGTCCTGACCTCTTT
gi|15 : -ATTGCA--ATCTGTTTGCGTCTTTG---GCAAATTGCCCGA-------------TCCCCTTCTGA--CTCGC---AT---------AACTC-GCGCTC----------CCT-GACGGCGGAGG-AGATGAGTTTGC
gi|17 : gggggagatgggcctttccgcactcaaatccgacgtagcaagcaTACTAAGTGGGTTGAGTGTGTGCCGCTCCCTTCCCAGACTGCAGAGGTGAAGACTGCAGCAGCTGTGACTGAGT--TCTTCACCC--AATTTGGCT
gi|18 : GCCCTGCTTGGCC-GCA-CTGGACGTGG-C-C-CTCTGCCAGAATTCGACATGGAGGATGACCC----C-AGG--GG----A-A-AT---G--GGCCGTTgtctg
gi|2 : TTT-TAGAAA-AT-CAGACACCGGCAGGTATCGGA-GAGTCAGAGTTGCT-AAACATACTTTTCATAAGAAAAA-AGATGTCCTAAATCCATTTCAACCATTTGCCAAGCGCTA-TCTTGCCCCTGTTGTCCTT-G-CAACCCGCCAAAAACATGT-CCAACAGCAGGATATAAATTTAAGACA--ACATTGTATTTAATTGTAATGATGGGACACAAATCGGTCTATAGAACGATAGAAACGTACTTTT-GTAATCAAATTGG-GGATGCTAA-TCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTGTTTTGTCAATTATTACCGTTTTGCCTCCCCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTG--ATGCGACACCTAGGCCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGACAGCC-TGCCTTTGGACATGTGTATGGCGCCCTGATTGGCA-GCA-TTGGACGTAA-A-C-C-CTGCCAGAATTCGACATGAAGGATGG-CC----C-GGG--GG----A-T-ATTGTG--CTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTATGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATAGGCCT-GGCGGCGAAGT-AGATGAGATTACATCAATTCAGGGACT--CTGACTTCAGCGTACTACCGG--ACTGGTTTGATTGGGAGGTTGACTCAGACAAAGGGGACTT--GTTCCTGTCCAACCATACGGTGAA-ACACTATTGGATT-AATAGGCAACTCTT-CACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-GGGGAGGATGGCTT-TCAGGCAA--AGTTGCT-GTT-GGTCCCTGCTGGTCT----ACAGA-GGTCCTGC-GCC-TATGATATGA-CGTTT-CAGCC-ACTG---GGCATCAGGG-T-ATAGACTATACCAAGGCTGGGCTTA-GAGATCACTTTATTC--TGCTATGACATGATGCGAAAGGT-A-GAGCA-GTATGTCAACTG--CT--GTGGATATT-GCAGCC-GGAATAAG------CTCCCCC----AGCGACA-TGTCTGGGCCGAGATGCTGGGGTACGATGCTGA-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT--GCGTTCTGGCCATG--------GTTTACTGAGTGGGTTGAGTTCTCGTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGT--TTTTCGCCCTAGGGTGGGCTccgcact
gi|20 : ATA-AAGACGGGAAAT-GTATTTATAGGTAATCATGGGACACAAATCG
gi|3 : -CT-TTATTTTG-----TCTACGTTGTCAATTACTACCCTTTTGCCTCCCCGGAT--------TCC-------CGGCCTCCAAAAGAGGTTG--TTGCGACACACGAGCCTTCTAGGTCAATTCCAAAGCTCTCTGTAAGTGAGGCTTGCCTTTGGACATGTAACCAGCGTCCTGCTTGGCC-GAA-TAAGACATGG-C-C-C-CTTCCAGAAT
gi|3 : aGACGTGGAGTATGG-TC----CAGGG--GG----A-T-ATataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|3 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatatagGCG--GTCTGTTTGTGTCTTGG---GCACATTGCCAGA------------GCACCCATCTGA--CTGGC---AG---------TATTC-GCGCTCCATG-ATATGACT-GACAGCGGAGG-AGATTATTTTGCATCAATTCAAGAACT--CTGACTTCAGCTTACCGCTAG--ACTGGTTTGATGGGGAGGTTGATCCAGACGAAGAGGACTT--GTTCCTGTCCAACCAAGCGCTGAA-ACACTATTGAATT-AATAGGCAACTCTT-CACCTTAGATGATACCAAAAGTCCTATGGAAGAT--GAGA-GTTGGGGATGGCTC-TCAGGCGA--AGTTGTT-G-G-GG--CCGGCTGGTCTCCGAACAGA-GTTCTTGC-GCC-TATGTCATGA-CGTTC-CAGCC-GCTGGCTGGTATCAGGG-G-A-AGACCGTTACAA-GCCCGGCTTA-GGGATCGTTTT-TTCCATG-TATGGCA-GATGCGAAGGAGAGCGAGCA-GTATGCCAGTTT--CT--TTTGGCCTT-GTAGCC-GGATTAAA------GCGCCTT----AGTGCCA-TGGCCAGGCCTATATGCTAAAATAT-ATGCTGG----CGCCTTTTGA-AGGTGGCATTTAGATT-------CCTTTTATCACAATCAA-ACAAGGGCGAATGTGTTCACTTTCT-GTCATG--------GTTggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|4 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacaCCACGTAAAAGTTTTTGAAAG-TT-GTATTTTA-----TCTATGTTATTAATCATTACCGTTTTACCCTCCCGGATTTTTAGACTCCTTCGTCTTGACCCCCAGAAGTGACTG--TTGCAACACATGATCCCTCTAGGTCCATTTTAGAGTTCTTGGTAAGTGGGAC-TGCCTTTGGACATGTGTCTGGCGCACTACGTGGCC-GTT-TTGGACGTGG-TGT-C-ATGCCAGATTTCGACATGGAGGATGA-CT----C-AGG--GG----A-ga
gi|4 : -ATTGCG--GTCTGTTTGCGTCTTTG---GTACCTTGCCCTACTCCCCCCCCCCTCCCCCCTCTGA--CGTGC---AG---------GATTC-GCG----GTG-ATATGCCT-GACGAGTGTGG-AGATGAGGTTGCATACATTAAAGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATCGGGAAGTCGACTCAGACGAAGGGGACTT--GTTCCTGT-CAACCAAGCGGTGAATTTTTTTTTTGATT-ACTAGGGAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGTAAGATGGGAGA-GGGGAGGCTGGTTC-TCAGGCGA--AGTTGTTGG-T-GGTTCCGGCTAGTCTCCGAACAGA-GGTCCTGC-GCC-TATGTCATGA-CGTTC-TAGCC-TATT---GGCATTAGAG-G-AAAGACCGTATCAAGCCCCGG-TTA-GATATTGC-TT-TTC--TGGTATGGCATGCTGCGAGGGGCA---AATA-GTGTGTCAGATC--CT--GTGGGCGTT-GCGGTC-GTAATAAA------CTCCACTTGTGAGCGCCA-TGTCCGGGCTGAGATGCTGagatggaccattccgaactcaaatcaagcaagccattgcggtctgtttgcgtctttggtaccttgccctactcccccccccctcccccctctgacgtgcaggattcgcggtgatatgcctgacgagtgtggagatgaggttgcatacattaaaggactctgacttcagcttactgctggactggtttgatcgggaagtcgactcagacgaaggggacttgttcctgtcaaccaagcggtgaattttttttttgattactagggaactcttcaccttagatgataccaaagtcctatgtaagatgggagaggggaggctggttctcaggcgaagttgttggtggttccggctagtctccgaacagaggtcctgcgcctatgtcatgacgttctagcctattggcattagaggaaagaccgtatcaagccccggttagatattgcttttctggtatggcatgctgcgaggggcaaatagtgtgtcagatcctgtgggcgttgcggtcgtaataaactccacttgtgagcgccatgtccgggctgagatgctg
gi|5 : ccacgtaaaagtttttgaaagttgtattttatctatgttattaatcattaccgttttaccctcccggatttttagactccttcgtcttgacccccagaagtgactgttgcaacacatgatccctctaggtccattttagagttcttggtaagtgggactgcctttggacatgtgtctggcgcactacgtggccgttttggacgtggtgtcatgccagatttcgacatggaggatgactcaggggaagatggaccattccgaactcaaatcaagcaagcc-----TTTATGTTGTCAGTTATTACCATTTTGCCTCTCCGGGTCTCCGTACTCCTTCATTTCGGCTTCCTGAAGTGGCTG--TTGTAATACGTGAGCCCTATAGGTTCATTTCAGAG--CTCTGTAAGTGAGGC-TGCCTTTGAACATGAGTCCGGCACCTTGCTTGACC-GTA-TTGGATGTGT-C-C-C-CTGCCAGAATTCGCCATGGAGGGTGA-TCGGGGC-GGGGTGG----ACC-ATTCCGTACTCTAATC-CGACTTGGCAAGCAAA-TG--CGATTTTTT------GCATCTTTTTGAACCTTGCCTGAGCCCCCTTCTGACTT-GCACTCTCTG-ATTAGCTT-GACGATGAAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTATTGCTGG--ACTGGTTTGATGGGGAGGTCGACGCAGACAAAGGGGACCT--ATTCCTGTCCAAACAAGCGGTGAA-ACGCAATTGGATT-AATAGGCAACTTTT-AACCCTAGATGATACC-AAAGTCCTATGGAAGATGAGAGAGGGGGAGGATGGATT-TCAGGTGA--AGTTGTTGG-T-CTTCCCGGCTGGTCTCTGAACAGA-GATCGTGC-GTG-TATGCCATGA-AGTTT-CAGCC-GCTG---GGCATCAGGG-G-ATATACTGTACCAAGGCCCGGCTT
gi|6 : TGATGCGA---GAAA-CAGCA-GTATGTCAGCCT--CT--GTGGACCTT-GCAGCC-GGAATAAGCGCCCCCCCCCCC----AGCGCCA-TGCCCGGGCCGAGATGCTGAAGTACCATGCTTG-TGCCC-CTGTAGAGAGGGTGCATCTAGATTCTCTTGGCCCTCTGCCACAATCCACCCAAAGGC-AATGTGT--ATGTTCTGGTCATGGTTGACCAGTTTACTAAGTGGGTTGAGCGCGTGCCACCCCTCTCC--------------CACGGCTGCAGAAGCTGTGGCTGAGT--TCTTCGTCC--GATTTGGCTga
gi|7 : TTTACAGAAA-AT-CAGACACCCATAGGCATAGGA-GAGTCAGAGTTGGC-AAACACACTTTACTTAAGGACAA-GGATGTTCTCAATCCATTTCAGCCATTTGACAAGTTCTA-TCTTGCCCCTGTTGCCCTT-G-------GC--AAAATATGG-CCGATAGCTGGATA--GATATAAGTCA--AG-TTGTATTTATAGGTAATCATGGGGTACCAATCTGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCTCGTAAAGGAATTTGATAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCCCTTTATCTCGCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCCAGAAGTGGATG--TTGCGACACATGAACCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGTAAGGC-TGCCTTTGGACATGTGTCCATCGTCCTGCTTGGCC-GCA-TTGGACGTGG-C-CTC-TTGTCTGAATTCGACATGGAGGATGA-CC----T-TGGAAGGTCAAA-TGACTGCG--GTCTGTTTGCGTTTTTT---GCACATTGCCCCA------------G-CCCCTTCTGA--CTCGC---A-------------------CTCCCTG-ATAGGCAT-GACGGCGGAGG-AGgtccgttccaagagttcaatgaccagggtcgaattatgagagtaagcttttggggggggggatttgtgaattgttgcagatccataaggagcggacgaccccttaccgtccctcagctaatggacaagtcgagaggtataatcggaccttgatggatgctgtccaatgttatatcaacaaagtacagggtcattgggacgagcacttagcccagattgcgggcgctttgtgctctgcagtcaataggcacacatattatacggccaaccgactcatgatgggcatggagatcaacatgcccgcagacctgatgtttggtactccacagaggaaccctcccgtgtaaatggaagct
gi|8 : caTTGCCTCTGTTCCCCTT-GGCAACCCGCCAAACACATGG-CCGACAGCTGGATA--GATATAAGACA--AAATTGTATTCATATGTAATCATGGGACACAAATCGGTCTACAGATCGATAGAAAGATACTTTT-GTAATCAAATTTA-GGATGCTAAATCCACGTAAAAGACCTTGAA-G-CT-GTATTTTG-----TTTGTCTTATCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCGAGAAGTGGCTG--TTGCGACACATGAACCCACTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCAGCGCCCTGCTTGACC-GCA-TTGGACATGGCC-C-C-CTACCAGAATCTGACATGAAGGATGA-CC----C-AGG--GG----A-
gi|8 : -T-ATTTCG--GTCTGTTTGCGACTTGG---GCACCTTGCCaaggggtcattcctcactcaaatccgacttagcaatctatttcggtctgtttgcgacttgggcaccttgcc
gi|9 : ttgcctctgttccccttggcaacccgccaaacacatggccgacagctggatagatataagacaaaattgtattcatatgtaatcatgggacacaaatcggtctacagatcgatagaaagatacttttgtaatcaaatttaggatgctaaatccacgtaaaagaccttgaagctgtattttgtttgtcttatcaattattacccttttgcctccccgggtctccggactccttcgtgtcggcctcgagaagtggctgttgcgacacatgaacccactaggtccattccagagctctctgtaagtgaggctgcctttggacatgtgtccagcgccctgcttgaccgcattggacatggccccctaccagaatctgacatgaaggatgacccaggggaaaggggtcattcctcactcaaatccgacttagcaatc--------GTTTACTAAGTGGGTTGAGTGCAAGCCGCTACCCTCCCAAACTGCAGAGGTCACGGCTGTGTAAGCTGTGGCTGAGT--TCCTTCCCC--GAATTGGCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CACGACCGCAAACCTGATACCGGTATTTGGTACTGCACAGAGGGACCCTCCAGTGGACATGGAAGCTTATGTGGTGAATTTGGAGCGGGCAATCCGGACAGCCCATGAGACGGCGCATTACCGCAGTACATCTGAAGAGCAGATCAAGAGGTATTATGACATTAAAGA
Unaligned ( gi|16 ): GCATTCCCGCCTTCGGAAGGGGGATTAAGATGGATTATGACCTTAAAGAATTCACTCGCTCCTTCAATCACAAAATTGCAAGGCTTTTCAGTGCTGAC
Unaligned ( gi|19 ): TACCGTCCCTCAGCTAATGGACAAGTTTAGAGATATAATCAGACCCTAATTGATAATATGCGATTTTAT
Alignments
lowQualScore : 1 11111 1111 11111 111111 11 1111 44444444444444 2222222222 1 222222222 2222 111 111111 1111 11 11 222222 1111 2222 11 1 1 222 22222222 11 11
lowQualScore : 0 8 8 0 8 8 0 1 8 1 0 0 8 6 66666 3 6 2222 77 5 0 6 3 6 7 5 5 22222 1 1 3 2 66 2 0 5 5 5 888 5 5 5 333333 33 0000 555 666 888 77777777777777 66 888 4444444444 5 1 5 2 5 1 5 1 2 99 0 99 1 99 5 6 0 6 6 6 3 777 3 6 6 99 444444444 1111 6 6 6 1 6 6 6 111 1 777 3 2 1 8 44 0 8 555555 55 3333 8 11 11 1 8 8 333333 7777 8 8 4444 22 0 2 77 0 0 000 2 2 99999999 99 1 1 11 33 1
lowQualScore : . . . . . . . . . . . . . . ..... . . .... .. . . . . . . . . ..... . . . . .. . . . . . ... . . . ...... .. .... ... ... ... .............. .. ... .......... . . . . . . . . . .. . .. . .. . . . . . . . ... . . . .. ......... .... . . . . . . . ... . ... . . . . .. . . ...... .. .... . .. .. . . . ...... .... . . .... .. . . .. . . ... . . ........ .. . . .. .. .
lowQualScore : 0 0 0 8 0 0 8 4 0 4 6 6 0 7 55555 2 7 8888 99 0 7 7 0 7 3 0 7 55555 0 4 6 8 99 0 2 7 0 0 222 0 0 0 999999 88 6666 777 222 888 00000000000000 99 888 5555555555 0 4 0 8 0 4 0 9 5 22 7 22 0 22 2 7 5 7 7 7 7 222 7 7 7 22 888888888 5555 7 7 7 0 7 7 7 777 0 555 5 5 0 0 66 8 0 000000 22 6666 0 00 00 0 0 0 000000 0000 0 8 0000 55 2 5 22 0 0 888 5 5 00000000 66 4 0 00 88 0
consensus : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
Reference ( family-5470 ) : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGCTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
gi|1 : TTT-TAGAAA-ATGCAGAC-CCGGCAGGTATCGGACGAGTCA-AGTTGCT-AAACAC--TTTTCATAAGAAAAACAGATGTCCTAAATCCATTTCCAACATTTGCCAAGCGCTAATCTTGCCC-TGTTGTC-TT-G-CA--CCGCCAAAAACATGTTCCAACAGCAGGAT-TAAATTTAAGACA--AA-TTGTATTTAATTGTAATGATGGGAC-CAAATCGGTCTATAGAACGATAGAAACGTACTTTTTGTAATCAAATTGGAGGATGCTAA--TCACGTAAAGGACTTTGAAAGTCT-GTATTTTGGTTCCCCTGTTTTGTCAATTATTACCGTTTTGCT---CCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGAGTTGCGA-ACACCAGGCCTCTAGGTTCATTCAAGAGCTCTCT-TAAGACAGCC-TGC-TTTGGACATGTGTATGGCGCCCTGATTGGCCAGCAATTGGA-GTAA-A-C-C-CTGCCAGGATTCGACATGAAGAATGG-CC------GGG--GG----A-T-ATTGTG--CTCTGTTGGCGTCTTGG---GCACATTGCC-GA------------GCCCTTCACTGA--CTCGC---AG----------ACTCCGCGCTTCCTGCATAGGCCTTGGCGGCGAAAGTAGATGAGATTA-AT-AATTCAGGGACTGCCTGACTTCAGCGTACTACCAGGAACTGGTTTGATTGG-AGGTTGACTC-GA--AAAGGGACTTTGGTTCCTGTCCAAC-ATACG-TGAA-AC-CTATTGGATTTAATAG-CAACTCTTACACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-AGGGAGGATGGCTTGTCAGGCAATAAGTTGCT-G-TTGGTCCTG-CGGGTCT----ACAGAAGGTCCTGCCGCCGTATGATATGAGCGTTTTCAGCCAGCTG---GG-ATCAGGGCGTATAGACTATACCAAG--CTGGCTTAAGAGATCACTTT-TCT--TGCTATGACATGATGCGAAAGGTAA-GAGCAAGTATGTCAACTTGCCTAAGTGGATATTTGCAGCCTGGAATAAG------CTCCCCC----AGCGACAATGTCTGGGCCGAGATGCTGGGGTACGATGCTGATT-TCG--TTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT---CGTT-TGGCCATG--------GTTTACTGAGTGGGTTGAGTTC-CTTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGTGGTTTTCGCC
gi|10 : GCCCGA--------------CCCCTTCTGA--CTCGC---AG---------GACAT-GTGCTCCCTG-ATATCCCT-GACGG---AGG-AGATGAGTTTGCATCAATGCAGGGTCT--CTGACTTCATGTTAATGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGAACTT--GTTCCTGTCCAACCAAGTGATGAA-ACACTATTGTATT-AATAAGTGACTCTT-CACTATAGATGATATC-AAAG---------------------GGGAGAATGACTC-TCAGGCGA--AGTTGTT-----------GG-TGGTCCC---------GG--CTG---------GTC--------TC-CGAAC-ACTG---GGCATTAGGG-G-ATAGACCGTACCAAGGCTGGGCTTA-GAGAT---TTT-TT-----ATATGGCATGAt
gi|11 : AGAAATAT--ACACACCCGTAGGTATCGGA-GAGTAAGAGTT-CTAAAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCTTTTCAACCATTCGATAAGTTCTA-TCGTGCCCCTGTTGTCCTTGG-CAACCCGCCAAAAGCATGG-CTGACAGCTGG--ATAGATATAAGACA--AAATTGCATTTATAGGTAATCATGGGACACCAATCGGTCTATAGATCGATAGAAACATATGTTT-GTA---AAGT------ATGCTAAATCCACGTAAAGGACTTTGAAAG-
gi|12 : TT-CAGAAA-AT-CAGACACCCGTAAGCATCGGG-GAGTCAGAGTTGTA-AAGCACATTTTTCTTAAGGAAGA-ATGTGCCCTGAATCCATTTGAACCATTTTACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GACAA-CCGCC-AAAACATAG-TCAACGGCTGG--ATAGATATAAGACA--AAATTGTGTTTATAGGTATTTATGAGACATAAA
gi|13 : GGTCTACAGATCAAAAGAAACGTACTTTT-TTAATCCAATTTG-GGATCATAAATCCACGTAAAGGACTTTGAAAG-CTTGTATTTTT-----GATATGTTGTCAATTATTACCCTTTTGCATCCCCGGGTGTCCGGACTCCTTCGTCGCGGCCTCCAGAAGTGACTG--TTGCGAC-C-----CCCTCTAGGTCCAGTCCTGACCTCTTT
gi|15 : -ATTGCA--ATCTGTTTGCGTCTTTG---GCAAATTGCCCGA-------------TCCCCTTCTGA--CTCGC---AT---------AACTC-GCGCTC----------CCT-GACGGCGGAGG-AGATGAGTTTGC
gi|17 : gggggagatgggcctttccgcactcaaatccgacgtagcaagcaTACTAAGTGGGTTGAGTGTGTGCCGCTCCCTTCCCAGACTGCAGAGGTGAAGACTGCAGCAGCTGTGACTGAGT--TCTTCACCC--AATTTGGCT
gi|18 : GCCCTGCTTGGCC-GCA-CTGGACGTGG-C-C-CTCTGCCAGAATTCGACATGGAGGATGACCC----C-AGG--GG----A-A-AT---G--GGCCGTTgtctg
gi|2 : TTT-TAGAAA-AT-CAGACACCGGCAGGTATCGGA-GAGTCAGAGTTGCT-AAACATACTTTTCATAAGAAAAA-AGATGTCCTAAATCCATTTCAACCATTTGCCAAGCGCTA-TCTTGCCCCTGTTGTCCTT-G-CAACCCGCCAAAAACATGT-CCAACAGCAGGATATAAATTTAAGACA--ACATTGTATTTAATTGTAATGATGGGACACAAATCGGTCTATAGAACGATAGAAACGTACTTTT-GTAATCAAATTGG-GGATGCTAA-TCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTGTTTTGTCAATTATTACCGTTTTGCCTCCCCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTG--ATGCGACACCTAGGCCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGACAGCC-TGCCTTTGGACATGTGTATGGCGCCCTGATTGGCA-GCA-TTGGACGTAA-A-C-C-CTGCCAGAATTCGACATGAAGGATGG-CC----C-GGG--GG----A-T-ATTGTG--CTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTATGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATAGGCCT-GGCGGCGAAGT-AGATGAGATTACATCAATTCAGGGACT--CTGACTTCAGCGTACTACCGG--ACTGGTTTGATTGGGAGGTTGACTCAGACAAAGGGGACTT--GTTCCTGTCCAACCATACGGTGAA-ACACTATTGGATT-AATAGGCAACTCTT-CACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-GGGGAGGATGGCTT-TCAGGCAA--AGTTGCT-GTT-GGTCCCTGCTGGTCT----ACAGA-GGTCCTGC-GCC-TATGATATGA-CGTTT-CAGCC-ACTG---GGCATCAGGG-T-ATAGACTATACCAAGGCTGGGCTTA-GAGATCACTTTATTC--TGCTATGACATGATGCGAAAGGT-A-GAGCA-GTATGTCAACTG--CT--GTGGATATT-GCAGCC-GGAATAAG------CTCCCCC----AGCGACA-TGTCTGGGCCGAGATGCTGGGGTACGATGCTGA-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT--GCGTTCTGGCCATG--------GTTTACTGAGTGGGTTGAGTTCTCGTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGT--TTTTCGCCCTAGGGTGGGCTccgcact
gi|20 : ATA-AAGACGGGAAAT-GTATTTATAGGTAATCATGGGACACAAATCG
gi|3 : -CT-TTATTTTG-----TCTACGTTGTCAATTACTACCCTTTTGCCTCCCCGGAT--------TCC-------CGGCCTCCAAAAGAGGTTG--TTGCGACACACGAGCCTTCTAGGTCAATTCCAAAGCTCTCTGTAAGTGAGGCTTGCCTTTGGACATGTAACCAGCGTCCTGCTTGGCC-GAA-TAAGACATGG-C-C-C-CTTCCAGAAT
gi|3 : aGACGTGGAGTATGG-TC----CAGGG--GG----A-T-ATataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|3 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatatagGCG--GTCTGTTTGTGTCTTGG---GCACATTGCCAGA------------GCACCCATCTGA--CTGGC---AG---------TATTC-GCGCTCCATG-ATATGACT-GACAGCGGAGG-AGATTATTTTGCATCAATTCAAGAACT--CTGACTTCAGCTTACCGCTAG--ACTGGTTTGATGGGGAGGTTGATCCAGACGAAGAGGACTT--GTTCCTGTCCAACCAAGCGCTGAA-ACACTATTGAATT-AATAGGCAACTCTT-CACCTTAGATGATACCAAAAGTCCTATGGAAGAT--GAGA-GTTGGGGATGGCTC-TCAGGCGA--AGTTGTT-G-G-GG--CCGGCTGGTCTCCGAACAGA-GTTCTTGC-GCC-TATGTCATGA-CGTTC-CAGCC-GCTGGCTGGTATCAGGG-G-A-AGACCGTTACAA-GCCCGGCTTA-GGGATCGTTTT-TTCCATG-TATGGCA-GATGCGAAGGAGAGCGAGCA-GTATGCCAGTTT--CT--TTTGGCCTT-GTAGCC-GGATTAAA------GCGCCTT----AGTGCCA-TGGCCAGGCCTATATGCTAAAATAT-ATGCTGG----CGCCTTTTGA-AGGTGGCATTTAGATT-------CCTTTTATCACAATCAA-ACAAGGGCGAATGTGTTCACTTTCT-GTCATG--------GTTggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|4 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacaCCACGTAAAAGTTTTTGAAAG-TT-GTATTTTA-----TCTATGTTATTAATCATTACCGTTTTACCCTCCCGGATTTTTAGACTCCTTCGTCTTGACCCCCAGAAGTGACTG--TTGCAACACATGATCCCTCTAGGTCCATTTTAGAGTTCTTGGTAAGTGGGAC-TGCCTTTGGACATGTGTCTGGCGCACTACGTGGCC-GTT-TTGGACGTGG-TGT-C-ATGCCAGATTTCGACATGGAGGATGA-CT----C-AGG--GG----A-ga
gi|4 : -ATTGCG--GTCTGTTTGCGTCTTTG---GTACCTTGCCCTACTCCCCCCCCCCTCCCCCCTCTGA--CGTGC---AG---------GATTC-GCG----GTG-ATATGCCT-GACGAGTGTGG-AGATGAGGTTGCATACATTAAAGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATCGGGAAGTCGACTCAGACGAAGGGGACTT--GTTCCTGT-CAACCAAGCGGTGAATTTTTTTTTTGATT-ACTAGGGAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGTAAGATGGGAGA-GGGGAGGCTGGTTC-TCAGGCGA--AGTTGTTGG-T-GGTTCCGGCTAGTCTCCGAACAGA-GGTCCTGC-GCC-TATGTCATGA-CGTTC-TAGCC-TATT---GGCATTAGAG-G-AAAGACCGTATCAAGCCCCGG-TTA-GATATTGC-TT-TTC--TGGTATGGCATGCTGCGAGGGGCA---AATA-GTGTGTCAGATC--CT--GTGGGCGTT-GCGGTC-GTAATAAA------CTCCACTTGTGAGCGCCA-TGTCCGGGCTGAGATGCTGagatggaccattccgaactcaaatcaagcaagccattgcggtctgtttgcgtctttggtaccttgccctactcccccccccctcccccctctgacgtgcaggattcgcggtgatatgcctgacgagtgtggagatgaggttgcatacattaaaggactctgacttcagcttactgctggactggtttgatcgggaagtcgactcagacgaaggggacttgttcctgtcaaccaagcggtgaattttttttttgattactagggaactcttcaccttagatgataccaaagtcctatgtaagatgggagaggggaggctggttctcaggcgaagttgttggtggttccggctagtctccgaacagaggtcctgcgcctatgtcatgacgttctagcctattggcattagaggaaagaccgtatcaagccccggttagatattgcttttctggtatggcatgctgcgaggggcaaatagtgtgtcagatcctgtgggcgttgcggtcgtaataaactccacttgtgagcgccatgtccgggctgagatgctg
gi|5 : ccacgtaaaagtttttgaaagttgtattttatctatgttattaatcattaccgttttaccctcccggatttttagactccttcgtcttgacccccagaagtgactgttgcaacacatgatccctctaggtccattttagagttcttggtaagtgggactgcctttggacatgtgtctggcgcactacgtggccgttttggacgtggtgtcatgccagatttcgacatggaggatgactcaggggaagatggaccattccgaactcaaatcaagcaagcc-----TTTATGTTGTCAGTTATTACCATTTTGCCTCTCCGGGTCTCCGTACTCCTTCATTTCGGCTTCCTGAAGTGGCTG--TTGTAATACGTGAGCCCTATAGGTTCATTTCAGAG--CTCTGTAAGTGAGGC-TGCCTTTGAACATGAGTCCGGCACCTTGCTTGACC-GTA-TTGGATGTGT-C-C-C-CTGCCAGAATTCGCCATGGAGGGTGA-TCGGGGC-GGGGTGG----ACC-ATTCCGTACTCTAATC-CGACTTGGCAAGCAAA-TG--CGATTTTTT------GCATCTTTTTGAACCTTGCCTGAGCCCCCTTCTGACTT-GCACTCTCTG-ATTAGCTT-GACGATGAAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTATTGCTGG--ACTGGTTTGATGGGGAGGTCGACGCAGACAAAGGGGACCT--ATTCCTGTCCAAACAAGCGGTGAA-ACGCAATTGGATT-AATAGGCAACTTTT-AACCCTAGATGATACC-AAAGTCCTATGGAAGATGAGAGAGGGGGAGGATGGATT-TCAGGTGA--AGTTGTTGG-T-CTTCCCGGCTGGTCTCTGAACAGA-GATCGTGC-GTG-TATGCCATGA-AGTTT-CAGCC-GCTG---GGCATCAGGG-G-ATATACTGTACCAAGGCCCGGCTT
gi|6 : TGATGCGA---GAAA-CAGCA-GTATGTCAGCCT--CT--GTGGACCTT-GCAGCC-GGAATAAGCGCCCCCCCCCCC----AGCGCCA-TGCCCGGGCCGAGATGCTGAAGTACCATGCTTG-TGCCC-CTGTAGAGAGGGTGCATCTAGATTCTCTTGGCCCTCTGCCACAATCCACCCAAAGGC-AATGTGT--ATGTTCTGGTCATGGTTGACCAGTTTACTAAGTGGGTTGAGCGCGTGCCACCCCTCTCC--------------CACGGCTGCAGAAGCTGTGGCTGAGT--TCTTCGTCC--GATTTGGCTga
gi|7 : TTTACAGAAA-AT-CAGACACCCATAGGCATAGGA-GAGTCAGAGTTGGC-AAACACACTTTACTTAAGGACAA-GGATGTTCTCAATCCATTTCAGCCATTTGACAAGTTCTA-TCTTGCCCCTGTTGCCCTT-G-------GC--AAAATATGG-CCGATAGCTGGATA--GATATAAGTCA--AG-TTGTATTTATAGGTAATCATGGGGTACCAATCTGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCTCGTAAAGGAATTTGATAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCCCTTTATCTCGCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCCAGAAGTGGATG--TTGCGACACATGAACCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGTAAGGC-TGCCTTTGGACATGTGTCCATCGTCCTGCTTGGCC-GCA-TTGGACGTGG-C-CTC-TTGTCTGAATTCGACATGGAGGATGA-CC----T-TGGAAGGTCAAA-TGACTGCG--GTCTGTTTGCGTTTTTT---GCACATTGCCCCA------------G-CCCCTTCTGA--CTCGC---A-------------------CTCCCTG-ATAGGCAT-GACGGCGGAGG-AGgtccgttccaagagttcaatgaccagggtcgaattatgagagtaagcttttggggggggggatttgtgaattgttgcagatccataaggagcggacgaccccttaccgtccctcagctaatggacaagtcgagaggtataatcggaccttgatggatgctgtccaatgttatatcaacaaagtacagggtcattgggacgagcacttagcccagattgcgggcgctttgtgctctgcagtcaataggcacacatattatacggccaaccgactcatgatgggcatggagatcaacatgcccgcagacctgatgtttggtactccacagaggaaccctcccgtgtaaatggaagct
gi|8 : caTTGCCTCTGTTCCCCTT-GGCAACCCGCCAAACACATGG-CCGACAGCTGGATA--GATATAAGACA--AAATTGTATTCATATGTAATCATGGGACACAAATCGGTCTACAGATCGATAGAAAGATACTTTT-GTAATCAAATTTA-GGATGCTAAATCCACGTAAAAGACCTTGAA-G-CT-GTATTTTG-----TTTGTCTTATCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCGAGAAGTGGCTG--TTGCGACACATGAACCCACTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCAGCGCCCTGCTTGACC-GCA-TTGGACATGGCC-C-C-CTACCAGAATCTGACATGAAGGATGA-CC----C-AGG--GG----A-
gi|8 : -T-ATTTCG--GTCTGTTTGCGACTTGG---GCACCTTGCCaaggggtcattcctcactcaaatccgacttagcaatctatttcggtctgtttgcgacttgggcaccttgcc
gi|9 : ttgcctctgttccccttggcaacccgccaaacacatggccgacagctggatagatataagacaaaattgtattcatatgtaatcatgggacacaaatcggtctacagatcgatagaaagatacttttgtaatcaaatttaggatgctaaatccacgtaaaagaccttgaagctgtattttgtttgtcttatcaattattacccttttgcctccccgggtctccggactccttcgtgtcggcctcgagaagtggctgttgcgacacatgaacccactaggtccattccagagctctctgtaagtgaggctgcctttggacatgtgtccagcgccctgcttgaccgcattggacatggccccctaccagaatctgacatgaaggatgacccaggggaaaggggtcattcctcactcaaatccgacttagcaatc--------GTTTACTAAGTGGGTTGAGTGCAAGCCGCTACCCTCCCAAACTGCAGAGGTCACGGCTGTGTAAGCTGTGGCTGAGT--TCCTTCCCC--GAATTGGCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CACGACCGCAAACCTGATACCGGTATTTGGTACTGCACAGAGGGACCCTCCAGTGGACATGGAAGCTTATGTGGTGAATTTGGAGCGGGCAATCCGGACAGCCCATGAGACGGCGCATTACCGCAGTACATCTGAAGAGCAGATCAAGAGGTATTATGACATTAAAGA
Unaligned ( gi|16 ): GCATTCCCGCCTTCGGAAGGGGGATTAAGATGGATTATGACCTTAAAGAATTCACTCGCTCCTTCAATCACAAAATTGCAAGGCTTTTCAGTGCTGAC
Unaligned ( gi|19 ): TACCGTCCCTCAGCTAATGGACAAGTTTAGAGATATAATCAGACCCTAATTGATAATATGCGATTTTAT
Alignments
lowQualScore : 1 11111 1111 11111 111111 11 1111 44444444444444 2222222222 1 222222222 2222 111 111 1111 11 11 222222 1111 2222 11 1 1 222 22222222 11 11
lowQualScore : 0 8 8 0 8 8 0 1 8 1 0 0 8 6 66666 3 6 2222 77 5 0 6 3 6 7 5 5 22222 1 1 3 2 66 2 0 5 5 5 888 5 5 5 333333 33 0000 555 666 888 77777777777777 66 888 4444444444 5 1 5 2 5 1 5 1 2 99 0 99 1 99 5 6 0 6 6 6 3 777 3 6 6 99 444444444 1111 6 6 6 1 6 6 6 111 1 777 3 2 1 8 44 0 8 444 8 55 3333 8 11 11 1 8 8 333333 7777 8 8 4444 22 0 2 77 0 0 000 2 2 99999999 99 1 1 11 33 1
lowQualScore : . . . . . . . . . . . . . . ..... . . .... .. . . . . . . . . ..... . . . . .. . . . . . ... . . . ...... .. .... ... ... ... .............. .. ... .......... . . . . . . . . . .. . .. . .. . . . . . . . ... . . . .. ......... .... . . . . . . . ... . ... . . . . .. . . ... . .. .... . .. .. . . . ...... .... . . .... .. . . .. . . ... . . ........ .. . . .. .. .
lowQualScore : 0 0 0 8 0 0 8 4 0 4 6 6 0 7 55555 2 7 8888 99 0 7 7 0 7 3 0 7 55555 0 4 6 8 99 0 2 7 0 0 222 0 0 0 999999 88 6666 777 222 888 00000000000000 99 888 5555555555 0 4 0 8 0 4 0 9 5 22 7 22 0 22 2 7 5 7 7 7 7 222 7 7 7 22 888888888 5555 7 7 7 0 7 7 7 777 0 555 5 5 0 0 66 8 0 222 8 22 6666 0 00 00 0 0 0 000000 0000 0 8 0000 55 2 5 22 0 0 888 5 5 00000000 66 4 0 00 88 0
consensus : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
Reference ( family-5470 ) : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
gi|1 : TTT-TAGAAA-ATGCAGAC-CCGGCAGGTATCGGACGAGTCA-AGTTGCT-AAACAC--TTTTCATAAGAAAAACAGATGTCCTAAATCCATTTCCAACATTTGCCAAGCGCTAATCTTGCCC-TGTTGTC-TT-G-CA--CCGCCAAAAACATGTTCCAACAGCAGGAT-TAAATTTAAGACA--AA-TTGTATTTAATTGTAATGATGGGAC-CAAATCGGTCTATAGAACGATAGAAACGTACTTTTTGTAATCAAATTGGAGGATGCTAA--TCACGTAAAGGACTTTGAAAGTCT-GTATTTTGGTTCCCCTGTTTTGTCAATTATTACCGTTTTGCT---CCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGAGTTGCGA-ACACCAGGCCTCTAGGTTCATTCAAGAGCTCTCT-TAAGACAGCC-TGC-TTTGGACATGTGTATGGCGCCCTGATTGGCCAGCAATTGGA-GTAA-A-C-C-CTGCCAGGATTCGACATGAAGAATGG-CC------GGG--GG----A-T-ATTGTG--CTCTGTTGGCGTCTTGG---GCACATTGCC-GA------------GCCCTTCACTGA--CTCGC---AG----------ACTCCGCGCTTCCTGCATAGGCCTTGGCGGCGAAAGTAGATGAGATTA-AT-AATTCAGGGACTGCCTGACTTCAGCGTACTACCAGGAACTGGTTTGATTGG-AGGTTGACTC-GA--AAAGGGACTTTGGTTCCTGTCCAAC-ATACG-TGAA-AC-CTATTGGATTTAATAG-CAACTCTTACACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-AGGGAGGATGGCTTGTCAGGCAATAAGTTGCT-G-TTGGTCCTG-CGGGTCT----ACAGAAGGTCCTGCCGCCGTATGATATGAGCGTTTTCAGCCAGCTG---GG-ATCAGGGCGTATAGACTATACCAAG--CTGGCTTAAGAGATCACTTT-TCT--TGCTATGACATGATGCGAAAGGTAA-GAGCAAGTATGTCAACTTGCCTAAGTGGATATTTGCAGCCTGGAATAAG------CTCCCCC----AGCGACAATGTCTGGGCCGAGATGCTGGGGTACGATGCTGATT-TCG--TTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT---CGTT-TGGCCATG--------GTTTACTGAGTGGGTTGAGTTC-CTTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGTGGTTTTCGCC
gi|10 : GCCCGA--------------CCCCTTCTGA--CTCGC---AG---------GACAT-GTGCTCCCTG-ATATCCCT-GACGG---AGG-AGATGAGTTTGCATCAATGCAGGGTCT--CTGACTTCATGTTAATGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGAACTT--GTTCCTGTCCAACCAAGTGATGAA-ACACTATTGTATT-AATAAGTGACTCTT-CACTATAGATGATATC-AAAG---------------------GGGAGAATGACTC-TCAGGCGA--AGTTGTT-----------GG-TGGTCCC---------GG--CTG---------GTC--------TC-CGAAC-ACTG---GGCATTAGGG-G-ATAGACCGTACCAAGGCTGGGCTTA-GAGAT---TTT-TT-----ATATGGCATGAt
gi|11 : AGAAATAT--ACACACCCGTAGGTATCGGA-GAGTAAGAGTT-CTAAAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCTTTTCAACCATTCGATAAGTTCTA-TCGTGCCCCTGTTGTCCTTGG-CAACCCGCCAAAAGCATGG-CTGACAGCTGG--ATAGATATAAGACA--AAATTGCATTTATAGGTAATCATGGGACACCAATCGGTCTATAGATCGATAGAAACATATGTTT-GTA---AAGT------ATGCTAAATCCACGTAAAGGACTTTGAAAG-
gi|12 : TT-CAGAAA-AT-CAGACACCCGTAAGCATCGGG-GAGTCAGAGTTGTA-AAGCACATTTTTCTTAAGGAAGA-ATGTGCCCTGAATCCATTTGAACCATTTTACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GACAA-CCGCC-AAAACATAG-TCAACGGCTGG--ATAGATATAAGACA--AAATTGTGTTTATAGGTATTTATGAGACATAAA
gi|13 : GGTCTACAGATCAAAAGAAACGTACTTTT-TTAATCCAATTTG-GGATCATAAATCCACGTAAAGGACTTTGAAAG-CTTGTATTTTT-----GATATGTTGTCAATTATTACCCTTTTGCATCCCCGGGTGTCCGGACTCCTTCGTCGCGGCCTCCAGAAGTGACTG--TTGCGAC-C-----CCCTCTAGGTCCAGTCCTGACCTCTTT
gi|15 : -ATTGCA--ATCTGTTTGCGTCTTTG---GCAAATTGCCCGA-------------TCCCCTTCTGA--CTCGC---AT---------AACTC-GCGCTC----------CCT-GACGGCGGAGG-AGATGAGTTTGC
gi|17 : gggggagatgggcctttccgcactcaaatccgacgtagcaagcaTACTAAGTGGGTTGAGTGTGTGCCGCTCCCTTCCCAGACTGCAGAGGTGAAGACTGCAGCAGCTGTGACTGAGT--TCTTCACCC--AATTTGGCT
gi|18 : GCCCTGCTTGGCC-GCA-CTGGACGTGG-C-C-CTCTGCCAGAATTCGACATGGAGGATGACCC----C-AGG--GG----A-A-AT---G--GGCCGTTgtctg
gi|2 : TTT-TAGAAA-AT-CAGACACCGGCAGGTATCGGA-GAGTCAGAGTTGCT-AAACATACTTTTCATAAGAAAAA-AGATGTCCTAAATCCATTTCAACCATTTGCCAAGCGCTA-TCTTGCCCCTGTTGTCCTT-G-CAACCCGCCAAAAACATGT-CCAACAGCAGGATATAAATTTAAGACA--ACATTGTATTTAATTGTAATGATGGGACACAAATCGGTCTATAGAACGATAGAAACGTACTTTT-GTAATCAAATTGG-GGATGCTAA-TCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTGTTTTGTCAATTATTACCGTTTTGCCTCCCCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTG--ATGCGACACCTAGGCCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGACAGCC-TGCCTTTGGACATGTGTATGGCGCCCTGATTGGCA-GCA-TTGGACGTAA-A-C-C-CTGCCAGAATTCGACATGAAGGATGG-CC----C-GGG--GG----A-T-ATTGTG--CTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTATGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATAGGCCT-GGCGGCGAAGT-AGATGAGATTACATCAATTCAGGGACT--CTGACTTCAGCGTACTACCGG--ACTGGTTTGATTGGGAGGTTGACTCAGACAAAGGGGACTT--GTTCCTGTCCAACCATACGGTGAA-ACACTATTGGATT-AATAGGCAACTCTT-CACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-GGGGAGGATGGCTT-TCAGGCAA--AGTTGCT-GTT-GGTCCCTGCTGGTCT----ACAGA-GGTCCTGC-GCC-TATGATATGA-CGTTT-CAGCC-ACTG---GGCATCAGGG-T-ATAGACTATACCAAGGCTGGGCTTA-GAGATCACTTTATTC--TGCTATGACATGATGCGAAAGGT-A-GAGCA-GTATGTCAACTG--CT--GTGGATATT-GCAGCC-GGAATAAG------CTCCCCC----AGCGACA-TGTCTGGGCCGAGATGCTGGGGTACGATGCTGA-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT--GCGTTCTGGCCATG--------GTTTACTGAGTGGGTTGAGTTCTCGTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGT--TTTTCGCCCTAGGGTGGGCTccgcact
gi|20 : ATA-AAGACGGGAAAT-GTATTTATAGGTAATCATGGGACACAAATCG
gi|3 : -CT-TTATTTTG-----TCTACGTTGTCAATTACTACCCTTTTGCCTCCCCGGAT--------TCC-------CGGCCTCCAAAAGAGGTTG--TTGCGACACACGAGCCTTCTAGGTCAATTCCAAAGCTCTCTGTAAGTGAGGCTTGCCTTTGGACATGTAACCAGCGTCCTGCTTGGCC-GAA-TAAGACATGG-C-C-C-CTTCCAGAAT
gi|3 : aGACGTGGAGTATGG-TC----CAGGG--GG----A-T-ATataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|3 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatatagGCG--GTCTGTTTGTGTCTTGG---GCACATTGCCAGA------------GCACCCATCTGA--CTGGC---AG---------TATTC-GCGCTCCATG-ATATGACT-GACAGCGGAGG-AGATTATTTTGCATCAATTCAAGAACT--CTGACTTCAGCTTACCGCTAG--ACTGGTTTGATGGGGAGGTTGATCCAGACGAAGAGGACTT--GTTCCTGTCCAACCAAGCGCTGAA-ACACTATTGAATT-AATAGGCAACTCTT-CACCTTAGATGATACCAAAAGTCCTATGGAAGAT--GAGA-GTTGGGGATGGCTC-TCAGGCGA--AGTTGTT-G-G-GG--CCGGCTGGTCTCCGAACAGA-GTTCTTGC-GCC-TATGTCATGA-CGTTC-CAGCC-GCTGGCTGGTATCAGGG-G-A-AGACCGTTACAA-GCCCGGCTTA-GGGATCGTTTT-TTCCATG-TATGGCA-GATGCGAAGGAGAGCGAGCA-GTATGCCAGTTT--CT--TTTGGCCTT-GTAGCC-GGATTAAA------GCGCCTT----AGTGCCA-TGGCCAGGCCTATATGCTAAAATAT-ATGCTGG----CGCCTTTTGA-AGGTGGCATTTAGATT-------CCTTTTATCACAATCAA-ACAAGGGCGAATGTGTTCACTTTCT-GTCATG--------GTTggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|4 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacaCCACGTAAAAGTTTTTGAAAG-TT-GTATTTTA-----TCTATGTTATTAATCATTACCGTTTTACCCTCCCGGATTTTTAGACTCCTTCGTCTTGACCCCCAGAAGTGACTG--TTGCAACACATGATCCCTCTAGGTCCATTTTAGAGTTCTTGGTAAGTGGGAC-TGCCTTTGGACATGTGTCTGGCGCACTACGTGGCC-GTT-TTGGACGTGG-TGT-C-ATGCCAGATTTCGACATGGAGGATGA-CT----C-AGG--GG----A-ga
gi|4 : -ATTGCG--GTCTGTTTGCGTCTTTG---GTACCTTGCCCTACTCCCCCCCCCCTCCCCCCTCTGA--CGTGC---AG---------GATTC-GCG----GTG-ATATGCCT-GACGAGTGTGG-AGATGAGGTTGCATACATTAAAGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATCGGGAAGTCGACTCAGACGAAGGGGACTT--GTTCCTGT-CAACCAAGCGGTGAATTTTTTTTTTGATT-ACTAGGGAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGTAAGATGGGAGA-GGGGAGGCTGGTTC-TCAGGCGA--AGTTGTTGG-T-GGTTCCGGCTAGTCTCCGAACAGA-GGTCCTGC-GCC-TATGTCATGA-CGTTC-TAGCC-TATT---GGCATTAGAG-G-AAAGACCGTATCAAGCCCCGG-TTA-GATATTGC-TT-TTC--TGGTATGGCATGCTGCGAGGGGCA---AATA-GTGTGTCAGATC--CT--GTGGGCGTT-GCGGTC-GTAATAAA------CTCCACTTGTGAGCGCCA-TGTCCGGGCTGAGATGCTGagatggaccattccgaactcaaatcaagcaagccattgcggtctgtttgcgtctttggtaccttgccctactcccccccccctcccccctctgacgtgcaggattcgcggtgatatgcctgacgagtgtggagatgaggttgcatacattaaaggactctgacttcagcttactgctggactggtttgatcgggaagtcgactcagacgaaggggacttgttcctgtcaaccaagcggtgaattttttttttgattactagggaactcttcaccttagatgataccaaagtcctatgtaagatgggagaggggaggctggttctcaggcgaagttgttggtggttccggctagtctccgaacagaggtcctgcgcctatgtcatgacgttctagcctattggcattagaggaaagaccgtatcaagccccggttagatattgcttttctggtatggcatgctgcgaggggcaaatagtgtgtcagatcctgtgggcgttgcggtcgtaataaactccacttgtgagcgccatgtccgggctgagatgctg
gi|5 : ccacgtaaaagtttttgaaagttgtattttatctatgttattaatcattaccgttttaccctcccggatttttagactccttcgtcttgacccccagaagtgactgttgcaacacatgatccctctaggtccattttagagttcttggtaagtgggactgcctttggacatgtgtctggcgcactacgtggccgttttggacgtggtgtcatgccagatttcgacatggaggatgactcaggggaagatggaccattccgaactcaaatcaagcaagcc-----TTTATGTTGTCAGTTATTACCATTTTGCCTCTCCGGGTCTCCGTACTCCTTCATTTCGGCTTCCTGAAGTGGCTG--TTGTAATACGTGAGCCCTATAGGTTCATTTCAGAG--CTCTGTAAGTGAGGC-TGCCTTTGAACATGAGTCCGGCACCTTGCTTGACC-GTA-TTGGATGTGT-C-C-C-CTGCCAGAATTCGCCATGGAGGGTGA-TCGGGGC-GGGGTGG----ACC-ATTCCGTACTCTAATC-CGACTTGGCAAGCAAA-TG--CGATTTTTT------GCATCTTTTTGAACCTTGCCTGAGCCCCCTTCTGACTT-GCACTCTCTG-ATTAGCTT-GACGATGAAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTATTGCTGG--ACTGGTTTGATGGGGAGGTCGACGCAGACAAAGGGGACCT--ATTCCTGTCCAAACAAGCGGTGAA-ACGCAATTGGATT-AATAGGCAACTTTT-AACCCTAGATGATACC-AAAGTCCTATGGAAGATGAGAGAGGGGGAGGATGGATT-TCAGGTGA--AGTTGTTGG-T-CTTCCCGGCTGGTCTCTGAACAGA-GATCGTGC-GTG-TATGCCATGA-AGTTT-CAGCC-GCTG---GGCATCAGGG-G-ATATACTGTACCAAGGCCCGGCTT
gi|6 : TGATGCGA---GAAA-CAGCA-GTATGTCAGCCT--CT--GTGGACCTT-GCAGCC-GGAATAAGCGCCCCCCCCCCC----AGCGCCA-TGCCCGGGCCGAGATGCTGAAGTACCATGCTTG-TGCCC-CTGTAGAGAGGGTGCATCTAGATTCTCTTGGCCCTCTGCCACAATCCACCCAAAGGC-AATGTGT--ATGTTCTGGTCATGGTTGACCAGTTTACTAAGTGGGTTGAGCGCGTGCCACCCCTCTCC--------------CACGGCTGCAGAAGCTGTGGCTGAGT--TCTTCGTCC--GATTTGGCTga
gi|7 : TTTACAGAAA-AT-CAGACACCCATAGGCATAGGA-GAGTCAGAGTTGGC-AAACACACTTTACTTAAGGACAA-GGATGTTCTCAATCCATTTCAGCCATTTGACAAGTTCTA-TCTTGCCCCTGTTGCCCTT-G-------GC--AAAATATGG-CCGATAGCTGGATA--GATATAAGTCA--AG-TTGTATTTATAGGTAATCATGGGGTACCAATCTGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCTCGTAAAGGAATTTGATAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCCCTTTATCTCGCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCCAGAAGTGGATG--TTGCGACACATGAACCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGTAAGGC-TGCCTTTGGACATGTGTCCATCGTCCTGCTTGGCC-GCA-TTGGACGTGG-C-CTC-TTGTCTGAATTCGACATGGAGGATGA-CC----T-TGGAAGGTCAAA-TGACTGCG--GTCTGTTTGCGTTTTTT---GCACATTGCCCCA------------G-CCCCTTCTGA--CTCGC---A-------------------CTCCCTG-ATAGGCAT-GACGGCGGAGG-AGgtccgttccaagagttcaatgaccagggtcgaattatgagagtaagcttttggggggggggatttgtgaattgttgcagatccataaggagcggacgaccccttaccgtccctcagctaatggacaagtcgagaggtataatcggaccttgatggatgctgtccaatgttatatcaacaaagtacagggtcattgggacgagcacttagcccagattgcgggcgctttgtgctctgcagtcaataggcacacatattatacggccaaccgactcatgatgggcatggagatcaacatgcccgcagacctgatgtttggtactccacagaggaaccctcccgtgtaaatggaagct
gi|8 : caTTGCCTCTGTTCCCCTT-GGCAACCCGCCAAACACATGG-CCGACAGCTGGATA--GATATAAGACA--AAATTGTATTCATATGTAATCATGGGACACAAATCGGTCTACAGATCGATAGAAAGATACTTTT-GTAATCAAATTTA-GGATGCTAAATCCACGTAAAAGACCTTGAA-G-CT-GTATTTTG-----TTTGTCTTATCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCGAGAAGTGGCTG--TTGCGACACATGAACCCACTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCAGCGCCCTGCTTGACC-GCA-TTGGACATGGCC-C-C-CTACCAGAATCTGACATGAAGGATGA-CC----C-AGG--GG----A-
gi|8 : -T-ATTTCG--GTCTGTTTGCGACTTGG---GCACCTTGCCaaggggtcattcctcactcaaatccgacttagcaatctatttcggtctgtttgcgacttgggcaccttgcc
gi|9 : ttgcctctgttccccttggcaacccgccaaacacatggccgacagctggatagatataagacaaaattgtattcatatgtaatcatgggacacaaatcggtctacagatcgatagaaagatacttttgtaatcaaatttaggatgctaaatccacgtaaaagaccttgaagctgtattttgtttgtcttatcaattattacccttttgcctccccgggtctccggactccttcgtgtcggcctcgagaagtggctgttgcgacacatgaacccactaggtccattccagagctctctgtaagtgaggctgcctttggacatgtgtccagcgccctgcttgaccgcattggacatggccccctaccagaatctgacatgaaggatgacccaggggaaaggggtcattcctcactcaaatccgacttagcaatc--------GTTTACTAAGTGGGTTGAGTGCAAGCCGCTACCCTCCCAAACTGCAGAGGTCACGGCTGTGTAAGCTGTGGCTGAGT--TCCTTCCCC--GAATTGGCT
blockSeqs : A T . . A T . G . G GCAAC A . ATAT GG A . T . A . T . C G T C . C T . . TG T T C GGGGC GT TCAA CC TAC CAA CTCCCCCCCCCCTC AC CTG CCCCCTTCTG . C . T . C . T C . . G . A T A . . A T AGG T G . . GTTGGTC CCGA . . . T . . . GCT C G T G G . CA A CCA A AA GAGC . . . A . . CGCCCC TGTG . G TGC CC G TC C G TCA C G GTTGACCA GT C A . TA G
blockSeqs : . . . . . T . G . . CAAC A . ATA . A . G . A . . . G C A T . A . . . CC . . . CA AA . TG A . TTTTTTGC . . G . C . G . C . T C . . T . G . A . . . A TGG A . . . GGTGGTT CCGA . . . A . . . . C T T G G . CG . C C AG AAA . . . C . . . . . C TT C G CT . . G C G . TC T T . . T
blockSeqs : . . . . . A . A . . ACAA A . ATA . A . T . A . . . C T T C . A . . . C . . . C . . A G . GC . . A . C . T . C . A C . . G . C . A . . . A TGA A . . . GGTCTTC CTGA . . . T . . . . T G A G C . TG . C G GG TA . . . G . . . . . . . C . . . . A C . . GT C G . . A
blockSeqs : . . . . T . C . . CAAC . . AT . A . T . A . . . G C T T . G . . . A . . . C . . T C . GC . . G . T . T . G . T A . . C . G . T . . . A T A . . . GGGG C . . . T . . . . C G T C C . . . . . . CA . . . C . . . . . . AA . G .
blockSeqs : . . . . AT . A . . . . . . . A C T G . A . . . C . . . C . . T G . T . . T . C . A . T . G C . . G . G . G . . . . . . . . . . . . . . C . . . . C G . G C
blockSeqs : . . . . . C C T G . A . . . C . . . T . . T G . G . . G . . . G . C . T
blockSeqs : . . C . . . . . . . C . . . C . . G . . . . . . . . . . . .
blockSeqs : G
blockSeqCons : CAAC* ATA* ***** ** C***** G********* ** ** ** ** CCGA G** NA** ** ** GT **
originalCons : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATATAGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNAA-GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGCGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
finalCons : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GCAAC-CCGCCAAAAACATGG-CCGACAGCTGGATA-AGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CCC-----GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AGG---------ACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGGG--ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNA--GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGTGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CACGACCGCAAACCTGATACCGGTATTTGGTACTGCACAGAGGGACCCTCCAGTGGACATGGAAGCTTATGTGGTGAATTTGGAGCGGGCAATCCGGACAGCCCATGAGACGGCGCATTACCGCAGTACATCTGAAGAGCAGATCAAGAGGTATTATGACATTAAAGA
Unaligned ( gi|16 ): GCATTCCCGCCTTCGGAAGGGGGATTAAGATGGATTATGACCTTAAAGAATTCACTCGCTCCTTCAATCACAAAATTGCAAGGCTTTTCAGTGCTGAC
Unaligned ( gi|19 ): TACCGTCCCTCAGCTAATGGACAAGTTTAGAGATATAATCAGACCCTAATTGATAATATGCGATTTTAT
Alignments
lowQualScore : 1 11111 222 11111 111111 11 1111 44444444444444 2222222222 1 222222222 2222 111 111 222 11 11 222222 1111 2222 11 1 1 222 22222222 11 11
lowQualScore : 0 8 8 0 8 8 0 1 8 1 0 0 8 6 66666 3 6 555 77 5 0 6 3 6 7 5 5 22222 1 1 3 2 66 2 0 5 5 5 888 5 5 5 333333 33 0000 555 666 888 77777777777777 66 888 4444444444 5 1 5 2 5 1 5 1 2 99 0 99 1 99 5 6 0 6 6 6 3 777 3 6 6 99 444444444 1111 6 6 6 1 6 6 6 111 1 777 3 2 1 8 44 0 8 444 8 55 1 444 8 11 11 1 8 8 333333 7777 8 8 4444 22 0 2 77 0 0 000 2 2 99999999 3 1 1 11 33 1
lowQualScore : . . . . . . . . . . . . . . ..... . . ... .. . . . . . . . . ..... . . . . .. . . . . . ... . . . ...... .. .... ... ... ... .............. .. ... .......... . . . . . . . . . .. . .. . .. . . . . . . . ... . . . .. ......... .... . . . . . . . ... . ... . . . . .. . . ... . .. . ... . .. .. . . . ...... .... . . .... .. . . .. . . ... . . ........ . . . .. .. .
lowQualScore : 0 0 0 8 0 0 8 4 0 4 6 6 0 7 55555 2 7 777 99 0 7 7 0 7 3 0 7 55555 0 4 6 8 99 0 2 7 0 0 222 0 0 0 999999 88 6666 777 222 888 00000000000000 99 888 5555555555 0 4 0 8 0 4 0 9 5 22 7 22 0 22 2 7 5 7 7 7 7 222 7 7 7 22 888888888 5555 7 7 7 0 7 7 7 777 0 555 5 5 0 0 66 8 0 222 8 22 0 000 0 00 00 0 0 0 000000 0000 0 8 0000 55 2 5 22 0 0 888 5 5 00000000 2 4 0 00 88 0
consensus : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATA-AGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNA--GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGTGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
Reference ( family-5470 ) : TTT-CAGAAA-AT-CAGACACCCGTAGGTATCGGA-GAGTCAGAGTTGCT-AAACACACTTTTCTTAAGGAAAA-AGATGTCCTGAATCCATTTCAACCATTTGACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-G-CAACCCGCCAAAAACATGG-CCGACAGCTGGATA-AGATATAAGACA--AAATTGTATTTATAGGTAATCATGGGACACAAATCGGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCNTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTNTCGGCCTCCAGAAGTGGCTG--TTGCGACACATGAGCCCTCTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCGGCGCCCTGCTTGGCC-GCA-TTGGACGTGG-C-C-C-CTGCCAGAATTCGACATGGAGGATGA-CC----C-GGG--GG----A-T-ATTGCG--GTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTCTGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATANGCCT-GACGGCGGAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTACTGCCGG--ACTGGTTTGATNGGGAGGTCGACTCAGACGAAGGGGACTT--GTTCCTGTCCAACCAAGCGGTGAA-ACGCTATTGGATT-AATAGGCAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGGAAGATGGGAGA-GGGGAGGATGGCTC-TCAGGCGA--AGTTGTT-G-T-GGTCCCGGCTGGTCTCCGAACAGA-GGTCCTGC-GCC-TATGNCATGA-CGTTC-CAGCC-GCTG---GGCATCAGGG-G-ATAGACCGTACCAAGGCCCGGCTTA-GAGATCGCTTT-TTC--TGNTATGGCATGATGCGAAGGGNA--GAGCA-GTATGTCAGCTT--CT--GTGGACNTT-GCAGCC-GGAATAAG------CTCCCCC----AGCGCCA-TGTCCGGGCCGAGATGCTGGGGTACGATGCTGG-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGGGC-AATGCGT--ACGTTCTGGCCATG--------GTTTACTAAGTGGGTTGAGTGCGTGCCGCTCCCCTCCCAGACTGCAGAGGTCACGGCTGCAGCAGCTGTGNCTGAGT--TCTTCGCCC--GANTTGGCT
gi|1 : TTT-TAGAAA-ATGCAGAC-CCGGCAGGTATCGGACGAGTCA-AGTTGCT-AAACAC--TTTTCATAAGAAAAACAGATGTCCTAAATCCATTTCCAACATTTGCCAAGCGCTAATCTTGCCC-TGTTGTC-TT-G-CA--CCGCCAAAAACATGTTCCAACAGCAGGATT-AAATTTAAGACA--AA-TTGTATTTAATTGTAATGATGGGAC-CAAATCGGTCTATAGAACGATAGAAACGTACTTTTTGTAATCAAATTGGAGGATGCTAA--TCACGTAAAGGACTTTGAAAGTCT-GTATTTTGGTTCCCCTGTTTTGTCAATTATTACCGTTTTGCT---CCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTGAGTTGCGA-ACACCAGGCCTCTAGGTTCATTCAAGAGCTCTCT-TAAGACAGCC-TGC-TTTGGACATGTGTATGGCGCCCTGATTGGCCAGCAATTGGA-GTAA-A-C-C-CTGCCAGGATTCGACATGAAGAATGG-CC------GGG--GG----A-T-ATTGTG--CTCTGTTGGCGTCTTGG---GCACATTGCC-GA------------GCCCTTCACTGA--CTCGC---AG----------ACTCCGCGCTTCCTGCATAGGCCTTGGCGGCGAAAGTAGATGAGATTA-AT-AATTCAGGGACTGCCTGACTTCAGCGTACTACCAGGAACTGGTTTGATTGG-AGGTTGACTC-GA--AAAGGGACTTTGGTTCCTGTCCAAC-ATACG-TGAA-AC-CTATTGGATTTAATAG-CAACTCTTACACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-AGGGAGGATGGCTTGTCAGGCAATAAGTTGCT-G-TTGGTCCTG-CGGGTCT----ACAGAAGGTCCTGCCGCCGTATGATATGAGCGTTTTCAGCCAGCTG---GG-ATCAGGGCGTATAGACTATACCAAG--CTGGCTTAAGAGATCACTTT-TCT--TGCTATGACATGATGCGAAAGGTAA-GAGCAAGTATGTCAACTTGCCTAAGTGGATATTTGCAGCCTGGAATAAG------CTCCCCC----AGCGACAATGTCTGGGCCGAGATGCTGGGGTACGATGCTGATT-TCG--TTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT---CGTT-TGGCCATG--------GTTTACTGAGTGGGTTGAGTTCCT-TCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGTGGTTTTCGCC
gi|10 : GCCCGA--------------CCCCTTCTGA--CTCGC---AG---------GACAT-GTGCTCCCTG-ATATCCCT-GACGG---AGG-AGATGAGTTTGCATCAATGCAGGGTCT--CTGACTTCATGTTAATGCTGG--ACTGGTTTGATGGGGAGGTCGACCCAGACGAAGGGAACTT--GTTCCTGTCCAACCAAGTGATGAA-ACACTATTGTATT-AATAAGTGACTCTT-CACTATAGATGATATC-AAAG---------------------GGGAGAATGACTC-TCAGGCGA--AGTTGTT-----------GG-TGGTCCC---------GG--CTG---------GTC--------TC-CGAAC-ACTG---GGCATTAGGG-G-ATAGACCGTACCAAGGCTGGGCTTA-GAGAT---TTT-TT-----ATATGGCATGAt
gi|11 : AGAAATAT--ACACACCCGTAGGTATCGGA-GAGTAAGAGTT-CTAAAACACACTTTTCTTAAGGAAGA-GGATGTCCTGAATCCTTTTCAACCATTCGATAAGTTCTA-TCGTGCCCCTGTTGTCCTTGG-CAACCCGCCAAAAGCATGG-CTGACAGCTGGAT--AGATATAAGACA--AAATTGCATTTATAGGTAATCATGGGACACCAATCGGTCTATAGATCGATAGAAACATATGTTT-GTA---AAGT------ATGCTAAATCCACGTAAAGGACTTTGAAAG-
gi|12 : TT-CAGAAA-AT-CAGACACCCGTAAGCATCGGG-GAGTCAGAGTTGTA-AAGCACATTTTTCTTAAGGAAGA-ATGTGCCCTGAATCCATTTGAACCATTTTACAAGCTCTA-TCTTGCCCCTGTTGCCCTT-GACAA-CCGCC-AAAACATAG-TCAACGGCTGGAT--AGATATAAGACA--AAATTGTGTTTATAGGTATTTATGAGACATAAA
gi|13 : GGTCTACAGATCAAAAGAAACGTACTTTT-TTAATCCAATTTG-GGATCATAAATCCACGTAAAGGACTTTGAAAG-CTTGTATTTTT-----GATATGTTGTCAATTATTACCCTTTTGCATCCCCGGGTGTCCGGACTCCTTCGTCGCGGCCTCCAGAAGTGACTG--TTGCGAC-C-----CCCTCTAGGTCCAGTCCTGACCTCTTT
gi|15 : -ATTGCA--ATCTGTTTGCGTCTTTG---GCAAATTGCCCGA-------------TCCCCTTCTGA--CTCGC---AT---------AACTC-GCGCTC----------CCT-GACGGCGGAGG-AGATGAGTTTGC
gi|17 : gggggagatgggcctttccgcactcaaatccgacgtagcaagcaTACTAAGTGGGTTGAGTGTGTGCCGCTCCCTTCCCAGACTGCAGAGGTGAAGACTGCAGCAGCTGTGACTGAGT--TCTTCACCC--AATTTGGCT
gi|18 : GCCCTGCTTGGCC-GCA-CTGGACGTGG-C-C-CTCTGCCAGAATTCGACATGGAGGATGACCC----C-AGG--GG----A-A-AT---G--GGCCGTTgtctg
gi|2 : TTT-TAGAAA-AT-CAGACACCGGCAGGTATCGGA-GAGTCAGAGTTGCT-AAACATACTTTTCATAAGAAAAA-AGATGTCCTAAATCCATTTCAACCATTTGCCAAGCGCTA-TCTTGCCCCTGTTGTCCTT-G-CAACCCGCCAAAAACATGT-CCAACAGCAGGATATAAATTTAAGACA--ACATTGTATTTAATTGTAATGATGGGACACAAATCGGTCTATAGAACGATAGAAACGTACTTTT-GTAATCAAATTGG-GGATGCTAA-TCCACGTAAAGGACTTTGAAAG-CT-GTATTTTG-----TCTGTTTTGTCAATTATTACCGTTTTGCCTCCCCGGGTCTCCGGACTCCATCGTTTTTGCCTTCAGAGGTGGTTG--ATGCGACACCTAGGCCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGACAGCC-TGCCTTTGGACATGTGTATGGCGCCCTGATTGGCA-GCA-TTGGACGTAA-A-C-C-CTGCCAGAATTCGACATGAAGGATGG-CC----C-GGG--GG----A-T-ATTGTG--CTCTGTTTGCGTCTTGG---GCACATTGCCCGA------------GCCCCCTTATGA--CTCGC---AG---------GACTC-GCGCTCCCTG-ATAGGCCT-GGCGGCGAAGT-AGATGAGATTACATCAATTCAGGGACT--CTGACTTCAGCGTACTACCGG--ACTGGTTTGATTGGGAGGTTGACTCAGACAAAGGGGACTT--GTTCCTGTCCAACCATACGGTGAA-ACACTATTGGATT-AATAGGCAACTCTT-CACCTTAAATGATACC-AAAGTCCTTTGGAAGAAGGGTGA-GGGGAGGATGGCTT-TCAGGCAA--AGTTGCT-GTT-GGTCCCTGCTGGTCT----ACAGA-GGTCCTGC-GCC-TATGATATGA-CGTTT-CAGCC-ACTG---GGCATCAGGG-T-ATAGACTATACCAAGGCTGGGCTTA-GAGATCACTTTATTC--TGCTATGACATGATGCGAAAGGTA--GAGCA-GTATGTCAACTG--CT--GTGGATATT-GCAGCC-GGAATAAG------CTCCCCC----AGCGACA-TGTCTGGGCCGAGATGCTGGGGTACGATGCTGA-T-TCG-CTTTGGAGAGGGTGCATCTAGATTTCCTTGGCCTTCTGTCACAATCCA-CCAAGAGC-AATGCGT--GCGTTCTGGCCATG--------GTTTACTGAGTGGGTTGAGTTCTCGTCGCTCCCCTCCCAGACTGTAGAGGTCACAGCTGCAGCAGCTATGTCTTAGT--TTTTCGCCCTAGGGTGGGCTccgcact
gi|20 : ATA-AAGACGGGAAAT-GTATTTATAGGTAATCATGGGACACAAATCG
gi|3 : -CT-TTATTTTG-----TCTACGTTGTCAATTACTACCCTTTTGCCTCCCCGGAT--------TCC-------CGGCCTCCAAAAGAGGTTG--TTGCGACACACGAGCCTTCTAGGTCAATTCCAAAGCTCTCTGTAAGTGAGGCTTGCCTTTGGACATGTAACCAGCGTCCTGCTTGGCC-GAA-TAAGACATGG-C-C-C-CTTCCAGAAT
gi|3 : aGACGTGGAGTATGG-TC----CAGGG--GG----A-T-ATataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|3 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatatagGCG--GTCTGTTTGTGTCTTGG---GCACATTGCCAGA------------GCACCCATCTGA--CTGGC---AG---------TATTC-GCGCTCCATG-ATATGACT-GACAGCGGAGG-AGATTATTTTGCATCAATTCAAGAACT--CTGACTTCAGCTTACCGCTAG--ACTGGTTTGATGGGGAGGTTGATCCAGACGAAGAGGACTT--GTTCCTGTCCAACCAAGCGCTGAA-ACACTATTGAATT-AATAGGCAACTCTT-CACCTTAGATGATACCAAAAGTCCTATGGAAGAT--GAGA-GTTGGGGATGGCTC-TCAGGCGA--AGTTGTT-G-G-GG--CCGGCTGGTCTCCGAACAGA-GTTCTTGC-GCC-TATGTCATGA-CGTTC-CAGCC-GCTGGCTGGTATCAGGG-G-A-AGACCGTTACAA-GCCCGGCTTA-GGGATCGTTTT-TTCCATG-TATGGCA-GATGCGAAGGAGAGCGAGCA-GTATGCCAGTTT--CT--TTTGGCCTT-GTAGCC-GGATTAAA------GCGCCTT----AGTGCCA-TGGCCAGGCCTATATGCTAAAATAT-ATGCTGG----CGCCTTTTGA-AGGTGGCATTTAGATT-------CCTTTTATCACAATCAA-ACAAGGGCGAATGTGTTCACTTTCT-GTCATG--------GTTggatcattccgtactcaaatccgaattagcaagcaacagcggtctgtttgtgtcttgggcacattgccagagcacccatctgactggcagtattcgcgctccatgatatgactgacagcggaggagattattttgcatcaattcaagaactctgacttcagcttaccgctagactggtttgatggggaggttgatccagacgaagaggacttgttcctgtccaaccaagcgctgaaacactattgaattaataggcaactcttcaccttagatgataccaaaagtcctatggaagatgagagttggggatggctctcaggcgaagttgttggggccggctggtctccgaacagagttcttgcgcctatgtcatgacgttccagccgctggctggtatcaggggaagaccgttacaagcccggcttagggatcgttttttccatgtatggcagatgcgaaggagagcgagcagtatgccagtttcttttggccttgtagccggattaaagcgccttagtgccatggccaggcctatatgctaaaatatatgctggcgccttttgaaggtggcatttagattccttttatcacaatcaaacaagggcgaatgtgttcactttctgtcatggttga
gi|4 : actttattttgtctacgttgtcaattactacccttttgcctccccggattcccggcctccaaaagaggttgttgcgacacacgagccttctaggtcaattccaaagctctctgtaagtgaggcttgcctttggacatgtaaccagcgtcctgcttggccgaataagacatggccccttccagaatataggacgtggccccttccagaatataggacgtggagtatggtccagggggatatggatcattccgtactcaaatccgaattagcaagcaacaCCACGTAAAAGTTTTTGAAAG-TT-GTATTTTA-----TCTATGTTATTAATCATTACCGTTTTACCCTCCCGGATTTTTAGACTCCTTCGTCTTGACCCCCAGAAGTGACTG--TTGCAACACATGATCCCTCTAGGTCCATTTTAGAGTTCTTGGTAAGTGGGAC-TGCCTTTGGACATGTGTCTGGCGCACTACGTGGCC-GTT-TTGGACGTGG-TGT-C-ATGCCAGATTTCGACATGGAGGATGA-CT----C-AGG--GG----A-ga
gi|4 : -ATTGCG--GTCTGTTTGCGTCTTTG---GTACCTTGCCCTACTCCCCCCCCCCTCCCCCCTCTGA--CGTGC---AG---------GATTC-GCG----GTG-ATATGCCT-GACGAGTGTGG-AGATGAGGTTGCATACATTAAAGGACT--CTGACTTCAGCTTACTGCTGG--ACTGGTTTGATCGGGAAGTCGACTCAGACGAAGGGGACTT--GTTCCTGT-CAACCAAGCGGTGAATTTTTTTTTTGATT-ACTAGGGAACTCTT-CACCTTAGATGATACC-AAAGTCCTATGTAAGATGGGAGA-GGGGAGGCTGGTTC-TCAGGCGA--AGTTGTTGG-T-GGTTCCGGCTAGTCTCCGAACAGA-GGTCCTGC-GCC-TATGTCATGA-CGTTC-TAGCC-TATT---GGCATTAGAG-G-AAAGACCGTATCAAGCCCCGG-TTA-GATATTGC-TT-TTC--TGGTATGGCATGCTGCGAGGGGCA---AATA-GTGTGTCAGATC--CT--GTGGGCGTT-GCGGTC-GTAATAAA------CTCCACTTGTGAGCGCCA-TGTCCGGGCTGAGATGCTGagatggaccattccgaactcaaatcaagcaagccattgcggtctgtttgcgtctttggtaccttgccctactcccccccccctcccccctctgacgtgcaggattcgcggtgatatgcctgacgagtgtggagatgaggttgcatacattaaaggactctgacttcagcttactgctggactggtttgatcgggaagtcgactcagacgaaggggacttgttcctgtcaaccaagcggtgaattttttttttgattactagggaactcttcaccttagatgataccaaagtcctatgtaagatgggagaggggaggctggttctcaggcgaagttgttggtggttccggctagtctccgaacagaggtcctgcgcctatgtcatgacgttctagcctattggcattagaggaaagaccgtatcaagccccggttagatattgcttttctggtatggcatgctgcgaggggcaaatagtgtgtcagatcctgtgggcgttgcggtcgtaataaactccacttgtgagcgccatgtccgggctgagatgctg
gi|5 : ccacgtaaaagtttttgaaagttgtattttatctatgttattaatcattaccgttttaccctcccggatttttagactccttcgtcttgacccccagaagtgactgttgcaacacatgatccctctaggtccattttagagttcttggtaagtgggactgcctttggacatgtgtctggcgcactacgtggccgttttggacgtggtgtcatgccagatttcgacatggaggatgactcaggggaagatggaccattccgaactcaaatcaagcaagcc-----TTTATGTTGTCAGTTATTACCATTTTGCCTCTCCGGGTCTCCGTACTCCTTCATTTCGGCTTCCTGAAGTGGCTG--TTGTAATACGTGAGCCCTATAGGTTCATTTCAGAG--CTCTGTAAGTGAGGC-TGCCTTTGAACATGAGTCCGGCACCTTGCTTGACC-GTA-TTGGATGTGT-C-C-C-CTGCCAGAATTCGCCATGGAGGGTGA-TCGGGGC-GGGGTGG----ACC-ATTCCGTACTCTAATC-CGACTTGGCAAGCAAA-TG--CGATTTTTT------GCATCTTTTTGAACCTTGCCTGAGCCCCCTTCTGACTT-GCACTCTCTG-ATTAGCTT-GACGATGAAGG-AGATGAGTTTGCATCAATTCAGGGACT--CTGACTTCAGCTTATTGCTGG--ACTGGTTTGATGGGGAGGTCGACGCAGACAAAGGGGACCT--ATTCCTGTCCAAACAAGCGGTGAA-ACGCAATTGGATT-AATAGGCAACTTTT-AACCCTAGATGATACC-AAAGTCCTATGGAAGATGAGAGAGGGGGAGGATGGATT-TCAGGTGA--AGTTGTTGG-T-CTTCCCGGCTGGTCTCTGAACAGA-GATCGTGC-GTG-TATGCCATGA-AGTTT-CAGCC-GCTG---GGCATCAGGG-G-ATATACTGTACCAAGGCCCGGCTT
gi|6 : TGATGCGA--GAAA--CAGCA-GTATGTCAGCCT--CT--GTGGACCTT-GCAGCC-GGAATAAGCGCCCCCCCCCCC----AGCGCCA-TGCCCGGGCCGAGATGCTGAAGTACCATGCTTG-TGCCC-CTGTAGAGAGGGTGCATCTAGATTCTCTTGGCCCTCTGCCACAATCCACCCAAAGGC-AATGTGT--ATGTTCTGGTCATGGTTGACCAGTTTACTAAGTGGGTTGAGCGCGTGCCACCCCTCTCC--------------CACGGCTGCAGAAGCTGTGGCTGAGT--TCTTCGTCC--GATTTGGCTga
gi|7 : TTTACAGAAA-AT-CAGACACCCATAGGCATAGGA-GAGTCAGAGTTGGC-AAACACACTTTACTTAAGGACAA-GGATGTTCTCAATCCATTTCAGCCATTTGACAAGTTCTA-TCTTGCCCCTGTTGCCCTT-G-------GC--AAAATATGG-CCGATAGCTGGATA--GATATAAGTCA--AG-TTGTATTTATAGGTAATCATGGGGTACCAATCTGTCTATAGATCGATAGAAACGTACTTTT-GTAATCAAATTTG-GGATGCTAAATCCTCGTAAAGGAATTTGATAG-CT-GTATTTTG-----TCTATGTTGTCAATTATTACCCCTTTATCTCGCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCCAGAAGTGGATG--TTGCGACACATGAACCCTCTAGGTTCATTCCAGAGCTCTCTGTAAGTAAGGC-TGCCTTTGGACATGTGTCCATCGTCCTGCTTGGCC-GCA-TTGGACGTGG-C-CTC-TTGTCTGAATTCGACATGGAGGATGA-CC----T-TGGAAGGTCAAA-TGACTGCG--GTCTGTTTGCGTTTTTT---GCACATTGCCCCA------------G-CCCCTTCTGA--CTCGC---A-------------------CTCCCTG-ATAGGCAT-GACGGCGGAGG-AGgtccgttccaagagttcaatgaccagggtcgaattatgagagtaagcttttggggggggggatttgtgaattgttgcagatccataaggagcggacgaccccttaccgtccctcagctaatggacaagtcgagaggtataatcggaccttgatggatgctgtccaatgttatatcaacaaagtacagggtcattgggacgagcacttagcccagattgcgggcgctttgtgctctgcagtcaataggcacacatattatacggccaaccgactcatgatgggcatggagatcaacatgcccgcagacctgatgtttggtactccacagaggaaccctcccgtgtaaatggaagct
gi|8 : caTTGCCTCTGTTCCCCTT-GGCAACCCGCCAAACACATGG-CCGACAGCTGGATA--GATATAAGACA--AAATTGTATTCATATGTAATCATGGGACACAAATCGGTCTACAGATCGATAGAAAGATACTTTT-GTAATCAAATTTA-GGATGCTAAATCCACGTAAAAGACCTTGAA-G-CT-GTATTTTG-----TTTGTCTTATCAATTATTACCCTTTTGCCTCCCCGGGTCTCCGGACTCCTTCGTGTCGGCCTCGAGAAGTGGCTG--TTGCGACACATGAACCCACTAGGTCCATTCCAGAGCTCTCTGTAAGTGAGGC-TGCCTTTGGACATGTGTCCAGCGCCCTGCTTGACC-GCA-TTGGACATGGCC-C-C-CTACCAGAATCTGACATGAAGGATGA-CC----C-AGG--GG----A-
gi|8 : -T-ATTTCG--GTCTGTTTGCGACTTGG---GCACCTTGCCaaggggtcattcctcactcaaatccgacttagcaatctatttcggtctgtttgcgacttgggcaccttgcc
gi|9 : ttgcctctgttccccttggcaacccgccaaacacatggccgacagctggatagatataagacaaaattgtattcatatgtaatcatgggacacaaatcggtctacagatcgatagaaagatacttttgtaatcaaatttaggatgctaaatccacgtaaaagaccttgaagctgtattttgtttgtcttatcaattattacccttttgcctccccgggtctccggactccttcgtgtcggcctcgagaagtggctgttgcgacacatgaacccactaggtccattccagagctctctgtaagtgaggctgcctttggacatgtgtccagcgccctgcttgaccgcattggacatggccccctaccagaatctgacatgaaggatgacccaggggaaaggggtcattcctcactcaaatccgacttagcaatc--------GTTTACTAAGTGGGTTGAGTGCAAGCCGCTACCCTCCCAAACTGCAGAGGTCACGGCTGTGTAAGCTGTGGCTGAGT--TCCTTCCCC--GAATTGGCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CACGACCGCAAACCTGATACCGGTATTTGGTACTGCACAGAGGGACCCTCCAGTGGACATGGAAGCTTATGTGGTGAATTTGGAGCGGGCAATCCGGACAGCCCATGAGACGGCGCATTACCGCAGTACATCTGAAGAGCAGATCAAGAGGTATTATGACATTAAAGA
Unaligned ( gi|16 ): GCATTCCCGCCTTCGGAAGGGGGATTAAGATGGATTATGACCTTAAAGAATTCACTCGCTCCTTCAATCACAAAATTGCAAGGCTTTTCAGTGCTGAC
Unaligned ( gi|19 ): TACCGTCCCTCAGCTAATGGACAAGTTTAGAGATATAATCAGACCCTAATTGATAATATGCGATTTTAT